Query psy9651
Match_columns 414
No_of_seqs 109 out of 804
Neff 2.5
Searched_HMMs 46136
Date Sat Aug 17 01:08:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00435 ACBP Acyl CoA binding 100.0 5.6E-30 1.2E-34 206.5 10.5 85 330-414 1-85 (85)
2 PF00887 ACBP: Acyl CoA bindin 100.0 2.3E-29 5.1E-34 200.0 9.8 85 330-414 1-87 (87)
3 PTZ00458 acyl CoA binding prot 100.0 3.9E-29 8.5E-34 205.3 10.4 84 331-414 2-87 (90)
4 KOG0817|consensus 99.9 4.2E-27 9.2E-32 207.2 10.6 88 327-414 2-89 (142)
5 COG4281 ACB Acyl-CoA-binding p 99.9 3.3E-25 7.1E-30 181.6 9.1 85 330-414 2-86 (87)
6 KOG3878|consensus 98.9 2.5E-09 5.4E-14 107.3 8.0 87 327-413 29-121 (469)
7 smart00295 B41 Band 4.1 homolo 97.4 0.00063 1.4E-08 58.5 7.9 84 330-414 99-203 (207)
8 PF00373 FERM_M: FERM central 97.3 0.00068 1.5E-08 54.5 5.8 84 330-414 11-122 (126)
9 KOG3530|consensus 80.7 6.8 0.00015 43.0 8.2 80 330-409 98-195 (616)
10 PF14728 PHTB1_C: PTHB1 C-term 51.5 17 0.00036 37.4 3.7 99 80-182 75-176 (377)
11 KOG3529|consensus 44.4 39 0.00085 37.0 5.3 74 340-414 118-211 (596)
12 PF06448 DUF1081: Domain of Un 35.9 69 0.0015 27.8 4.6 95 129-237 5-101 (118)
13 KOG2267|consensus 34.1 24 0.00053 37.6 1.8 89 173-272 296-399 (475)
14 KOG1120|consensus 32.6 65 0.0014 29.7 4.0 92 164-260 33-129 (134)
15 PTZ00120 D-tyrosyl-tRNA(Tyr) d 30.2 77 0.0017 29.4 4.2 39 361-413 78-117 (154)
16 PF05910 DUF868: Plant protein 27.4 58 0.0013 32.8 3.1 48 7-54 21-68 (274)
17 cd00563 Dtyr_deacylase D-Tyros 26.2 97 0.0021 28.5 4.1 38 362-413 78-117 (145)
18 PF05819 NolX: NolX protein; 22.6 2.3E+02 0.005 31.5 6.6 56 349-406 366-440 (624)
19 PF02580 Tyr_Deacylase: D-Tyr- 22.2 1.1E+02 0.0024 27.9 3.6 39 361-413 76-116 (145)
20 TIGR00256 D-tyrosyl-tRNA(Tyr) 22.1 1.3E+02 0.0027 27.8 4.0 37 362-412 78-116 (145)
21 PRK05273 D-tyrosyl-tRNA(Tyr) d 21.0 1.4E+02 0.003 27.6 4.0 38 362-413 78-117 (147)
22 PLN00026 aquaporin NIP; Provi 20.0 88 0.0019 31.4 2.8 43 246-288 4-47 (298)
No 1
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.96 E-value=5.6e-30 Score=206.50 Aligned_cols=85 Identities=49% Similarity=0.924 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHhcCCCCChHHHHHHHHhhhhhhcCCCCCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy9651 330 IDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQEL 409 (414)
Q Consensus 330 LEEeFeaAVe~VKsLpsKpSnEdKLeLYALYKQATvGDCnt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVneL 409 (414)
|++.|++|+++|++++..+++|++|+|||||||||.|||+.++||+||++||+||+||++++|||++|||++||++++++
T Consensus 1 ~~~~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l 80 (85)
T cd00435 1 LQEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEEL 80 (85)
T ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q psy9651 410 LAKYQ 414 (414)
Q Consensus 410 lpKYG 414 (414)
+++||
T Consensus 81 ~~~~~ 85 (85)
T cd00435 81 IAKYA 85 (85)
T ss_pred hhccC
Confidence 99997
No 2
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.96 E-value=2.3e-29 Score=200.02 Aligned_cols=85 Identities=44% Similarity=0.869 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhcCC--CCChHHHHHHHHhhhhhhcCCCCCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy9651 330 IDEDFKKAVEDVKTLTK--RPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQ 407 (414)
Q Consensus 330 LEEeFeaAVe~VKsLps--KpSnEdKLeLYALYKQATvGDCnt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVn 407 (414)
|+++|+.|++++++++. .++++++|+|||||||||+|||+.++|++||+++++||+||++++|||++|||++||++++
T Consensus 1 Le~~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~ 80 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIELVE 80 (87)
T ss_dssp HHHHHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 68999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q psy9651 408 ELLAKYQ 414 (414)
Q Consensus 408 eLlpKYG 414 (414)
+++++|.
T Consensus 81 ~~~~~~~ 87 (87)
T PF00887_consen 81 ELIPKYE 87 (87)
T ss_dssp HHHHHH-
T ss_pred HHHHhcC
Confidence 9999984
No 3
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.96 E-value=3.9e-29 Score=205.28 Aligned_cols=84 Identities=30% Similarity=0.580 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCC--CCChHHHHHHHHhhhhhhcCCCCCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy9651 331 DEDFKKAVEDVKTLTK--RPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQE 408 (414)
Q Consensus 331 EEeFeaAVe~VKsLps--KpSnEdKLeLYALYKQATvGDCnt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVne 408 (414)
.+.|++|+++|++++. .++++++|+|||||||||+|||+.++||+||+++|+||+||++++|||++|||++||+++++
T Consensus 2 ~~~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~~~ 81 (90)
T PTZ00458 2 ADLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIVTE 81 (90)
T ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5679999999998876 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy9651 409 LLAKYQ 414 (414)
Q Consensus 409 LlpKYG 414 (414)
+.++|.
T Consensus 82 l~~~w~ 87 (90)
T PTZ00458 82 LFPNWE 87 (90)
T ss_pred Hhhccc
Confidence 999984
No 4
>KOG0817|consensus
Probab=99.94 E-value=4.2e-27 Score=207.15 Aligned_cols=88 Identities=44% Similarity=0.844 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChHHHHHHHHhhhhhhcCCCCCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy9651 327 MTSIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKV 406 (414)
Q Consensus 327 ~~sLEEeFeaAVe~VKsLpsKpSnEdKLeLYALYKQATvGDCnt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELV 406 (414)
++.+.+.|+.|++.+++++..|+++++|+|||||||||+|||+.++||+||++||+||+||++++|||++|||+.||+++
T Consensus 2 ~~~~~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~Yv~~~ 81 (142)
T KOG0817|consen 2 AATLEAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEAYVEKV 81 (142)
T ss_pred cchHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy9651 407 QELLAKYQ 414 (414)
Q Consensus 407 neLlpKYG 414 (414)
.+++++|+
T Consensus 82 ~~l~~~~~ 89 (142)
T KOG0817|consen 82 EELIPKYG 89 (142)
T ss_pred HHHHHHhh
Confidence 99999985
No 5
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.92 E-value=3.3e-25 Score=181.64 Aligned_cols=85 Identities=45% Similarity=0.883 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHhcCCCCChHHHHHHHHhhhhhhcCCCCCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy9651 330 IDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQEL 409 (414)
Q Consensus 330 LEEeFeaAVe~VKsLpsKpSnEdKLeLYALYKQATvGDCnt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVneL 409 (414)
+...|+.|...|+.++.+|++++.|+|||||||+++||.+..+||+||++||+||+||..++|.|+|+|.++||.+|+++
T Consensus 2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYialVeeL 81 (87)
T COG4281 2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIALVEEL 81 (87)
T ss_pred hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q psy9651 410 LAKYQ 414 (414)
Q Consensus 410 lpKYG 414 (414)
..+||
T Consensus 82 kak~~ 86 (87)
T COG4281 82 KAKYG 86 (87)
T ss_pred HhhcC
Confidence 99997
No 6
>KOG3878|consensus
Probab=98.92 E-value=2.5e-09 Score=107.30 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=79.4
Q ss_pred CCChHHHHHHHHHHHHhcCC---CCChHHHHHHHHhhhhhhcCCCCCC-CC--CccchhHHHHHHHHHhcCCCCHHHHHH
Q psy9651 327 MTSIDEDFKKAVEDVKTLTK---RPTDEELLEIYALFKQATEGDNTTA-RP--SMFNLKAKYKWECWTKLKGTSSDQAKQ 400 (414)
Q Consensus 327 ~~sLEEeFeaAVe~VKsLps---KpSnEdKLeLYALYKQATvGDCnt~-RP--GmFD~vGRAKWDAWKaLKGMSKEEAMr 400 (414)
+.+|++-+..|+.+.+...+ .++.+++|+|-||-||+..|+.+++ .| |++|+.|+.+..+|..|+.||+++||.
T Consensus 29 Gf~LeElY~LA~~fyKe~~GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre~AM~ 108 (469)
T KOG3878|consen 29 GFPLEELYRLAFTFYKENSGKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEISREQAME 108 (469)
T ss_pred CCCHHHHHHHHHHHHHhccCCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcccHHHHHH
Confidence 67799999999999997664 7899999999999999999999964 35 799999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy9651 401 DYVKKVQELLAKY 413 (414)
Q Consensus 401 kYIELVneLlpKY 413 (414)
.||+|++++++.|
T Consensus 109 ~FV~Lldr~C~~F 121 (469)
T KOG3878|consen 109 GFVDLLDRMCSAF 121 (469)
T ss_pred HHHHHHHhcchhh
Confidence 9999999987754
No 7
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=97.43 E-value=0.00063 Score=58.54 Aligned_cols=84 Identities=21% Similarity=0.213 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHhcCCCCChHHHHHHHHhhhhhhcCCCCCCCC---C-----------ccch-------hHHHHHHHHH
Q psy9651 330 IDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARP---S-----------MFNL-------KAKYKWECWT 388 (414)
Q Consensus 330 LEEeFeaAVe~VKsLpsKpSnEdKLeLYALYKQATvGDCnt~RP---G-----------mFD~-------vGRAKWDAWK 388 (414)
++--|..+...+.+..=..+.++-..|-||.-|+..||++.+.. . +.+. ....=.++|+
T Consensus 99 ~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~ 178 (207)
T smart00295 99 LNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHK 178 (207)
T ss_pred HHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHH
Confidence 44556777776665555678899999999999999999984321 1 1110 1222358899
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcC
Q psy9651 389 KLKGTSSDQAKQDYVKKVQELLAKYQ 414 (414)
Q Consensus 389 aLKGMSKEEAMrkYIELVneLlpKYG 414 (414)
++.|||+++||.+||+++.++ |.||
T Consensus 179 ~~~~~s~~~a~~~yl~~~~~l-p~fG 203 (207)
T smart00295 179 ELIGLSPEEAKLKYLELAEKL-PTYG 203 (207)
T ss_pred HcCCCCHHHHHHHHHHHhccc-cccC
Confidence 999999999999999999987 8887
No 8
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=97.25 E-value=0.00068 Score=54.53 Aligned_cols=84 Identities=24% Similarity=0.285 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhcCCCCChHHHHHHHHhhhhhhcCCCCCCC---CCccc------------h--------hHHHH---
Q psy9651 330 IDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTAR---PSMFN------------L--------KAKYK--- 383 (414)
Q Consensus 330 LEEeFeaAVe~VKsLpsKpSnEdKLeLYALYKQATvGDCnt~R---PGmFD------------~--------vGRAK--- 383 (414)
+.--|..+...+-.-.=..+.++-++|-||.-|+..||++... .+.++ + .+...
T Consensus 11 ~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~~~ 90 (126)
T PF00373_consen 11 RHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMKQKEWEK 90 (126)
T ss_dssp HHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCSTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhhHHHHHH
Confidence 4556777777776655588999999999999999999998221 11111 0 12222
Q ss_pred --HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q psy9651 384 --WECWTKLKGTSSDQAKQDYVKKVQELLAKYQ 414 (414)
Q Consensus 384 --WDAWKaLKGMSKEEAMrkYIELVneLlpKYG 414 (414)
-+.|++++|||..+||..||+++.++ |.||
T Consensus 91 ~I~~~~~~l~~~s~~~a~~~fl~~~~~~-p~yG 122 (126)
T PF00373_consen 91 RILEQHKKLRGMSPEEAKLQFLQICQSL-PTYG 122 (126)
T ss_dssp HHHHHHHHTTT--HHHHHHHHHHHHCTS-TTTT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcC-CCCC
Confidence 38899999999999999999999874 7776
No 9
>KOG3530|consensus
Probab=80.67 E-value=6.8 Score=42.96 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHH------hcCCCCChHHHHHHHHhhhhhhcCCCCCCC--CC---ccc-------hhHHHHHHHHHhcC
Q psy9651 330 IDEDFKKAVEDVK------TLTKRPTDEELLEIYALFKQATEGDNTTAR--PS---MFN-------LKAKYKWECWTKLK 391 (414)
Q Consensus 330 LEEeFeaAVe~VK------sLpsKpSnEdKLeLYALYKQATvGDCnt~R--PG---mFD-------~vGRAKWDAWKaLK 391 (414)
|.+++....-+++ ..+-..+-+.-.+|=||==||-.|||+..+ |+ -|. -.+.+=.+-||+|+
T Consensus 98 Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~r 177 (616)
T KOG3530|consen 98 LREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKELR 177 (616)
T ss_pred hhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHHhc
Confidence 6666555443332 222367888999999999999999999642 33 122 12334478999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy9651 392 GTSSDQAKQDYVKKVQEL 409 (414)
Q Consensus 392 GMSKEEAMrkYIELVneL 409 (414)
|+|+++|+-.|++.+.-+
T Consensus 178 GqspaqAElnyLnkAkwL 195 (616)
T KOG3530|consen 178 GQSPAQAELNYLNKAKWL 195 (616)
T ss_pred CCCHHHHHHHHHhhhhhh
Confidence 999999999999988643
No 10
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=51.52 E-value=17 Score=37.41 Aligned_cols=99 Identities=18% Similarity=0.371 Sum_probs=66.8
Q ss_pred EEEEEecccccchhhhheeeeeCCCCceeeeeccccccccCCCcccccccccccchhhhhhhheeeec-CcceeeEee--
Q psy9651 80 CYRVIHTEVKVPLKELVKVVNVNEDGMEYIDFVGDQTFRPLPEYYPELYDQSQCSDMAETVLGLQFIH-SPAQVCLSV-- 156 (414)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 156 (414)
..||+-.++.+||+=+.+......+..--+-+--++..-+|.+.|||+-. .+--..++|+|+++ +-..|.+.+
T Consensus 75 ~~rv~~~~~~LPL~L~~~~~~p~k~a~~KlTi~tn~~~v~L~~lFpdf~~----~~~~~nalgfq~~~~~g~~VTIlask 150 (377)
T PF14728_consen 75 IPRVVQCTFDLPLKLVCRPCQPVKNAKHKLTIDTNKPPVSLSDLFPDFLE----EDSQSNALGFQYLNGSGSVVTILASK 150 (377)
T ss_pred cceeeEEEEEechhheEEccCCccccceEEEEeCCCCCcCHHHHhhHhhc----cCCCCcEEEEEEeecCCceEEEEEec
Confidence 45889999999999888887766666555555555556667778888765 22234689999999 666777743
Q ss_pred eccceeeechhhhHHHHHHhhhcccc
Q psy9651 157 QSSHLRCHYSALSRVYAVLRDFSSRY 182 (414)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (414)
.|...|---+.++-.+-+++.+-.|-
T Consensus 151 ~s~RYRIQSd~~e~l~lv~~eLi~Rl 176 (377)
T PF14728_consen 151 TSNRYRIQSDSFEALWLVLEELIRRL 176 (377)
T ss_pred CCcEEEEEcCCHhHHHHHHHHHHHHH
Confidence 34455554455555666666655543
No 11
>KOG3529|consensus
Probab=44.43 E-value=39 Score=36.99 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=50.1
Q ss_pred HHHhcCCCCChHHHHHHHHhhhhhhcCCCCCC--CCCccc-------------hhHHHHH----H-HHHhcCCCCHHHHH
Q psy9651 340 DVKTLTKRPTDEELLEIYALFKQATEGDNTTA--RPSMFN-------------LKAKYKW----E-CWTKLKGTSSDQAK 399 (414)
Q Consensus 340 ~VKsLpsKpSnEdKLeLYALYKQATvGDCnt~--RPGmFD-------------~vGRAKW----D-AWKaLKGMSKEEAM 399 (414)
.+=+..-..+.|+.-.|-++==||..||.+.. +.|..+ -...++| . =|....||++++||
T Consensus 118 ~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~ 197 (596)
T KOG3529|consen 118 AILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAM 197 (596)
T ss_pred HHhccCCCCCchHHHHHHHHHHHHHhccccchhhhhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33344447788999999999999999998621 112111 0022223 3 35668999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy9651 400 QDYVKKVQELLAKYQ 414 (414)
Q Consensus 400 rkYIELVneLlpKYG 414 (414)
-.|.+++.+ ++-||
T Consensus 198 leylki~qd-le~yg 211 (596)
T KOG3529|consen 198 LEYLKIAQD-LEMYG 211 (596)
T ss_pred HHHHHHhcc-ccccc
Confidence 999999988 45554
No 12
>PF06448 DUF1081: Domain of Unknown Function (DUF1081); InterPro: IPR009454 This entry represents a conserved open beta-sheet domain found in several lipid transport proteins, including vitellogenin and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: heavy chain lipovitellin (lipovitellin-1), phosvitin, light chain lipovitellin (lipovitellin-2), and a von Willebrand factor type D domain (YGP40) [, ]. In vitellinogen, this domain is often found as part of the lipovitellin-1 peptide product. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport
Probab=35.90 E-value=69 Score=27.77 Aligned_cols=95 Identities=25% Similarity=0.316 Sum_probs=61.2
Q ss_pred cccccchhhhhhhheeeecCcceeeEeeeccceeeechhhhHHHHHHhhhccccCceeEeeeccchhhHhhhcccccccc
Q psy9651 129 DQSQCSDMAETVLGLQFIHSPAQVCLSVQSSHLRCHYSALSRVYAVLRDFSSRYGGQLTLKNTGLSMTRALYGATKEFDE 208 (414)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (414)
..+.|.+--+.++||+ +|..++-+...-+-++ -.=-++.-..-.|.|.++| +|+--..-++-+-++
T Consensus 5 ~~~~C~~~l~~~lGL~-------~C~~~~~p~~~~~~~~------p~fPL~Gp~~f~l~Lektd-~~~~Y~~~~~~~~~~ 70 (118)
T PF06448_consen 5 SYSSCFPQLESVLGLK-------LCTDVSYPNASSTNSA------PYFPLSGPAKFSLELEKTD-SVKGYHFKATYELQR 70 (118)
T ss_pred ehhhhhhhhccCcCeE-------EEEccccCCccccccc------cccccCCCEEEEEEEEeCC-CeeEEEEEEEEcccc
Confidence 4578999999999996 5877754443333222 0001233445578999999 877544444444444
Q ss_pred -ceeeEEEeeecCCcc-eEEEEEeeeeecCc
Q psy9651 209 -KVEVWTKVKLAPGAQ-LKLVHTNLSFEKKS 237 (414)
Q Consensus 209 -~~~~~~~~~~~~~~~-~kl~~~~~sf~~~~ 237 (414)
+-..|.-+-=+||.+ -+-++.++++..+.
T Consensus 71 ~~~~~~~l~~~tpGsk~~r~~~~~~~~~~~~ 101 (118)
T PF06448_consen 71 GGDDSFKLVFDTPGSKVPREASLTLEYNRKP 101 (118)
T ss_pred CccceEEEEEECCCCCCCeEEEEEEEeccCC
Confidence 557787777799999 66777777765543
No 13
>KOG2267|consensus
Probab=34.09 E-value=24 Score=37.64 Aligned_cols=89 Identities=31% Similarity=0.448 Sum_probs=56.5
Q ss_pred HHHh-hhccccCce----eEeeeccchhhHhhhccccccccceeeEEEeeecCCcceEEEEEeeeeecCceeEeeecccc
Q psy9651 173 AVLR-DFSSRYGGQ----LTLKNTGLSMTRALYGATKEFDEKVEVWTKVKLAPGAQLKLVHTNLSFEKKSCRVLWEYSHL 247 (414)
Q Consensus 173 ~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~sf~~~~~rv~~e~~h~ 247 (414)
.+|| +---||||. |-||..|||.--||-=-.++|-.|+ |.-|...+- .-+|.-+|-...-|+ .|
T Consensus 296 e~LrkNhHLry~gR~qygLFLKgiGLS~deal~fwr~sFtk~~---t~dkFdKEY---~YnIRh~YGlEGkR~-----ny 364 (475)
T KOG2267|consen 296 ERLRKNHHLRYGGRQQYGLFLKGIGLSVDEALAFWRGSFTKKM---TRDKFDKEY---RYNIRHNYGLEGKRA-----NY 364 (475)
T ss_pred HHHhhcccccccchhhhhhhhhccCcCHHHHHHHHHHHHhccC---ChhHhchhh---ceeheeccccccccc-----cC
Confidence 3444 344589986 4589999999999876667776433 111222221 234555666666666 56
Q ss_pred CC---------CCCCCCC-CCCCCCCCCChhhhhc
Q psy9651 248 TP---------PRPSTFA-PGCPQRSLEPPAILDT 272 (414)
Q Consensus 248 tp---------p~p~~~~-~g~p~~s~e~~~~ld~ 272 (414)
|| |+|+.-| -|||=|-++++-|-..
T Consensus 365 t~~sC~~Ii~~~~p~~gd~hgCPFr~~~~e~L~qk 399 (475)
T KOG2267|consen 365 TPFSCSKIILMNPPSEGDYHGCPFRHSDPEHLKQK 399 (475)
T ss_pred CcccHHHHhcCCCCCCCccCCCCCCCCCHHHHHHH
Confidence 77 6666554 6999999888766543
No 14
>KOG1120|consensus
Probab=32.57 E-value=65 Score=29.71 Aligned_cols=92 Identities=28% Similarity=0.388 Sum_probs=61.7
Q ss_pred echhhhHHHHHHhhhccccCceeEeeec---cchhhHhhhcccc-ccccceee-EEEeeecCCcceEEEEEeeeeecCce
Q psy9651 164 HYSALSRVYAVLRDFSSRYGGQLTLKNT---GLSMTRALYGATK-EFDEKVEV-WTKVKLAPGAQLKLVHTNLSFEKKSC 238 (414)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~kl~~~~~sf~~~~~ 238 (414)
--+|++|+-..|.|=-..-+=.+-+|+. |||.|-- |--+| .|||-||- =-+|-+.|-|||-||-+...|.||-+
T Consensus 33 Tp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtle-Y~~~kgkfDE~VeqdGv~I~ie~KA~l~liGteMDyvddkL 111 (134)
T KOG1120|consen 33 TPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLE-YTKTKGKFDEVVEQDGVRIFIEPKALLTLIGTEMDYVDDKL 111 (134)
T ss_pred CHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeee-eeccCCCCcceeeecCcEEEEcccceeeeccceehhhhhhh
Confidence 4578888888887633333333444554 4555432 33332 49997763 24667899999999999999999999
Q ss_pred eEeeeccccCCCCCCCCCCCCC
Q psy9651 239 RVLWEYSHLTPPRPSTFAPGCP 260 (414)
Q Consensus 239 rv~~e~~h~tpp~p~~~~~g~p 260 (414)
+- |...-+|-+ +.-=||-
T Consensus 112 ~S--efvf~npna--~gtcGcg 129 (134)
T KOG1120|consen 112 SS--EFVFSNPNA--KGTCGCG 129 (134)
T ss_pred cC--ceEeeCCCc--ccccccc
Confidence 98 877777764 3444553
No 15
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=30.19 E-value=77 Score=29.42 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=30.3
Q ss_pred hhhhcCCC-CCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy9651 361 KQATEGDN-TTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQELLAKY 413 (414)
Q Consensus 361 KQATvGDC-nt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVneLlpKY 413 (414)
-|.|..+| .+.+|++-+ -|++++|+..|-..++++...+
T Consensus 78 SQFTL~~~~KG~RPsF~~--------------aa~~~~A~~Ly~~f~~~l~~~~ 117 (154)
T PTZ00120 78 SQFTLFNVKKGNKPDFHL--------------AMSPEDALPLYNKFVEKFKKEY 117 (154)
T ss_pred EccccccCCCCCCCCccc--------------cCCHHHHHHHHHHHHHHHHhcC
Confidence 47777777 467886543 3789999999999999987765
No 16
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=27.36 E-value=58 Score=32.75 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=39.8
Q ss_pred ceeeeeecccccceeeEEEeeccccchhhhhhhccceeeecccceeee
Q psy9651 7 HLTLTWSASLLRLPVSVKLYNTLHTSGKAFIQQVKPLYIRTPVGVKLY 54 (414)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (414)
.+|+||+-+++....+|.+-+....+--.+--.+||...+-.-|-|-+
T Consensus 21 litvTWsk~~~g~~Lsv~v~~~~~~~~~~~k~~~~p~~fwkkkGsKsf 68 (274)
T PF05910_consen 21 LITVTWSKNLLGQSLSVSVDDASGSSSSSCKVDLKPWLFWKKKGSKSF 68 (274)
T ss_pred EEEEEEeCCccCCeEEEEEeCccccccccccccCccceeEecCCcccc
Confidence 469999999999999999998885555556667899999999998844
No 17
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=26.16 E-value=97 Score=28.46 Aligned_cols=38 Identities=32% Similarity=0.271 Sum_probs=28.7
Q ss_pred hhhc-CCC-CCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy9651 362 QATE-GDN-TTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQELLAKY 413 (414)
Q Consensus 362 QATv-GDC-nt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVneLlpKY 413 (414)
|.|. |++ .+.+|++-+ -|++++|+..|-..++++...+
T Consensus 78 QFTL~~~~~KG~rP~F~~--------------a~~~e~A~~ly~~fv~~l~~~~ 117 (145)
T cd00563 78 QFTLYADTKKGRRPSFSA--------------AAPPDKAEPLYESFVELLREKG 117 (145)
T ss_pred ccccccccCCCCCCCccc--------------cCCHHHHHHHHHHHHHHHHHcC
Confidence 5553 677 577886544 3789999999999999887654
No 18
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=22.55 E-value=2.3e+02 Score=31.49 Aligned_cols=56 Identities=29% Similarity=0.654 Sum_probs=38.3
Q ss_pred ChHHHHHHHHh------------hhhhhcCCCCCCC-CCccchhHHHHH-----HHHHhc-CCCCHHHHHHHHHHHH
Q psy9651 349 TDEELLEIYAL------------FKQATEGDNTTAR-PSMFNLKAKYKW-----ECWTKL-KGTSSDQAKQDYVKKV 406 (414)
Q Consensus 349 SnEdKLeLYAL------------YKQATvGDCnt~R-PGmFD~vGRAKW-----DAWKaL-KGMSKEEAMrkYIELV 406 (414)
.+|.+-+||-| |||...|+....+ |. .+++.++| |+|+++ +|=+..--+..|+..+
T Consensus 366 ~nDA~RELYrYSdyLPK~L~~~~f~~IVdG~s~tgKcPP--QViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~a 440 (624)
T PF05819_consen 366 ENDAMRELYRYSDYLPKNLSLEDFKQIVDGDSKTGKCPP--QVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVA 440 (624)
T ss_pred hhHHHHHHHHhhhccccccCHHHHHhHhcCccccCCCCH--HHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHH
Confidence 45777788866 8999999988654 43 77888886 999999 5533333334444443
No 19
>PF02580 Tyr_Deacylase: D-Tyr-tRNA(Tyr) deacylase; InterPro: IPR003732 This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterisation with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0019478 D-amino acid catabolic process, 0005737 cytoplasm; PDB: 3LMU_F 3LMT_B 3KNF_B 3KOC_C 3KNP_D 3KO9_F 3KO3_B 3KO5_C 3KOB_D 3LMV_E ....
Probab=22.17 E-value=1.1e+02 Score=27.94 Aligned_cols=39 Identities=33% Similarity=0.519 Sum_probs=27.9
Q ss_pred hhhh-cCCC-CCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy9651 361 KQAT-EGDN-TTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQELLAKY 413 (414)
Q Consensus 361 KQAT-vGDC-nt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVneLlpKY 413 (414)
-|.| .|++ .+.+|++-. .|++++|+..|-..++++...|
T Consensus 76 sQFTL~g~~~kG~rp~f~~--------------a~~~~~a~~ly~~f~~~l~~~~ 116 (145)
T PF02580_consen 76 SQFTLYGDTKKGNRPSFHN--------------AAPPEEAEELYERFVEKLREEY 116 (145)
T ss_dssp E-GGGGSBCSSSSSEBGTT--------------B--HHHHHHHHHHHHHHHHHHS
T ss_pred EeeeeeeeccCCCCccccc--------------cCCHHHHHHHHHHHHHHHHHhC
Confidence 3555 4788 677886443 5889999999999999988776
No 20
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=22.05 E-value=1.3e+02 Score=27.75 Aligned_cols=37 Identities=35% Similarity=0.367 Sum_probs=27.9
Q ss_pred hhh-cCCC-CCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q psy9651 362 QAT-EGDN-TTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQELLAK 412 (414)
Q Consensus 362 QAT-vGDC-nt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVneLlpK 412 (414)
|.| .|+| .+.+|++-+ -|++++|+..|-..++++...
T Consensus 78 QFTL~a~~~KG~rPsF~~--------------a~~~~~A~~ly~~fv~~l~~~ 116 (145)
T TIGR00256 78 QFTLAADTKKGMRPSFSK--------------GASPDRAEELYEYFVELCREK 116 (145)
T ss_pred CCcccccCCCCCCCCccc--------------cCCHHHHHHHHHHHHHHHHhc
Confidence 555 3677 577897544 378999999999999988653
No 21
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=20.97 E-value=1.4e+02 Score=27.61 Aligned_cols=38 Identities=29% Similarity=0.258 Sum_probs=28.2
Q ss_pred hhhc-CCC-CCCCCCccchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy9651 362 QATE-GDN-TTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQELLAKY 413 (414)
Q Consensus 362 QATv-GDC-nt~RPGmFD~vGRAKWDAWKaLKGMSKEEAMrkYIELVneLlpKY 413 (414)
|.|. |++ .+.+|++-+ -|++++|+..|-..++++...+
T Consensus 78 QFTL~a~~~KG~rP~F~~--------------a~~~~~A~~ly~~f~~~l~~~~ 117 (147)
T PRK05273 78 QFTLYADTRKGRRPSFSA--------------AAPPEEAEPLYDYFVEALRAQG 117 (147)
T ss_pred cccccccCCCCCCCCccc--------------cCCHHHHHHHHHHHHHHHHHcC
Confidence 5553 566 467886544 3889999999999999887653
No 22
>PLN00026 aquaporin NIP; Provisional
Probab=20.02 E-value=88 Score=31.44 Aligned_cols=43 Identities=33% Similarity=0.458 Sum_probs=27.6
Q ss_pred ccCCCCCCCCC-CCCCCCCCCChhhhhccchhhhcccccccccc
Q psy9651 246 HLTPPRPSTFA-PGCPQRSLEPPAILDTLEHFEVRMLPHCELSS 288 (414)
Q Consensus 246 h~tpp~p~~~~-~g~p~~s~e~~~~ld~~e~~e~~~l~~~e~~t 288 (414)
+-.|+.|++.+ ||+|...+----=.|.+.+.+++.||.|.--.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (298)
T PLN00026 4 EEVPSAPSTPATPGTPGGPLFGGFRVDSLSYGDRKLLPSCKCFP 47 (298)
T ss_pred ccCCCCCCCCCCCCCCCCcccccccccccccccccccccccccc
Confidence 34588888776 88887644333334555566888888886443
Done!