RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9651
(414 letters)
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 116
Score = 127 bits (321), Expect = 4e-36
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 324 RPSMTSIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYK 383
R +M + +DF+ ++ VK L K P +E L++YAL+KQATEG +P +F+L K K
Sbjct: 10 RTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAK 69
Query: 384 WECWTKLKGTSSDQAKQDYVKKVQELLAKYQ 414
W+ W L + A+Q+YV V L +
Sbjct: 70 WDAWNALGSLPKEAARQNYVDLVSSLSPSLE 100
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding
protein, fatty acid, lipid metabolism, structural
genomics; HET: COA PLM; 2.00A {Homo sapiens}
Length = 89
Score = 122 bits (308), Expect = 1e-34
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 326 SMTSIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWE 385
SM ++ DF +A EDV+ L RP D EL E+Y L+KQA GD A P M +LK K KWE
Sbjct: 1 SM-ALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWE 59
Query: 386 CWTKLKGTSSDQAKQDYVKKVQELLAKY 413
W KG S++ A Y+ K +EL+ KY
Sbjct: 60 AWNLKKGLSTEDATSAYISKAKELIEKY 87
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 121 bits (305), Expect = 4e-34
Identities = 40/83 (48%), Positives = 55/83 (66%)
Query: 331 DEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKL 390
+F+KA E+V+ L +P+DEE+L IY +KQAT GD T RP M + K KW+ W +L
Sbjct: 3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNEL 62
Query: 391 KGTSSDQAKQDYVKKVQELLAKY 413
KGTS + A + Y+ KV+EL KY
Sbjct: 63 KGTSKEDAMKAYINKVEELKKKY 85
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding
protein, COA binding protein, lipid binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 109
Score = 121 bits (305), Expect = 5e-34
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 325 PSMTSIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKW 384
+ + E F+KA ++ L + + E+LL +YA +KQ G+ T +PS F+ + K KW
Sbjct: 3 SGSSGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKW 62
Query: 385 ECWTKLKGTSSDQAKQDYVKKVQELLAKYQ 414
E W L +S QA Q+Y+ V++L +
Sbjct: 63 EAWKALGDSSPSQAMQEYIAVVKKLDPGWN 92
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport
protein; NMR {Saccharomyces cerevisiae}
Length = 86
Score = 119 bits (300), Expect = 2e-33
Identities = 38/84 (45%), Positives = 59/84 (70%)
Query: 330 IDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTK 389
+ + F++ + V L +P+ +ELLE+YAL+KQAT GDN +P +FN+K +YKWE W
Sbjct: 1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWEN 60
Query: 390 LKGTSSDQAKQDYVKKVQELLAKY 413
LKG S + A+++Y+ V +L+AKY
Sbjct: 61 LKGKSQEDAEKEYIALVDQLIAKY 84
>2lbb_A Acyl COA binding protein; protein binding, structural genomi
seattle structural genomics center for infectious
disease,; NMR {Babesia bovis}
Length = 96
Score = 119 bits (299), Expect = 3e-33
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 325 PSMTSIDEDFKKAVEDVKTL-TKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYK 383
M+ +DF AV+ V T ++++ L Y +KQAT GD +P M L+ KYK
Sbjct: 7 HHMS--ADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYK 64
Query: 384 WECWTKLKGTSSDQAKQDYVKKVQELLAKYQ 414
WE W L+G S++ AK+ YVK + L ++
Sbjct: 65 WEAWNALRGMSTESAKEAYVKLLDTLAPSWR 95
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding,
structural genomics, struct genomics consortium, SGC,
lipid-binding, membrane; HET: STE COA; 1.70A {Homo
sapiens}
Length = 119
Score = 117 bits (293), Expect = 4e-32
Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 317 SDLIRYLRPSMTSIDEDFKKAVEDVKTLTK----RPTDEELLEIYALFKQATEGDNTTAR 372
DL + + F+ AV+ +++L K +PT+E +L+ Y+ +KQATEG +R
Sbjct: 11 VDLGTENLYFQSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSR 70
Query: 373 PSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQELLAKYQ 414
P ++ +YKW+ W+ L + ++A YV+++++++
Sbjct: 71 PGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMP 112
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 114 bits (287), Expect = 1e-31
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 330 IDEDFKKAVEDVKTLTKR--PTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECW 387
+ + F++ V + L + +E L++Y +KQ+T G+ PS + K+E W
Sbjct: 2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAW 61
Query: 388 TKLKGTSSDQAKQDYVKKVQELLAKYQ 414
++ + + A++ YV V E+ +Q
Sbjct: 62 KSVENLNREDAQKRYVDIVSEIFPYWQ 88
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid
metabolism, lipid binding protein; HET: MES; 1.61A
{Moniliophthora perniciosa}
Length = 106
Score = 113 bits (285), Expect = 4e-31
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 330 IDEDFKKAVEDVKTLTK----RPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWE 385
F KAVE V++L K +PT +E L Y FKQAT GD +RP + + K KW+
Sbjct: 4 SKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWD 63
Query: 386 CWTKLKGTSSDQAKQDYVKKVQELLAKYQ 414
W ++GTS + A Q YV+K+ E+L K
Sbjct: 64 AWKSVEGTSKEVAYQKYVEKLLEILKKAD 92
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing,
fatty acid metabolism, lipid transport, lipid binding
protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 112 bits (281), Expect = 2e-30
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 324 RPSMTSIDEDFKKAVEDVKTLTK----RPTDEELLEIYALFKQATEGDNTTARPSMFNLK 379
+ F+ AV ++ L K RP+ EE+L Y+ +KQAT G RP ++
Sbjct: 2 MSPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPI 61
Query: 380 AKYKWECWTKLKGTSSDQAKQDYVKKVQELLAKY 413
+YKW+ W L S ++A Y+ +++ + K
Sbjct: 62 GRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKV 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 4e-08
Identities = 57/364 (15%), Positives = 99/364 (27%), Gaps = 100/364 (27%)
Query: 55 NTLHTTGKTFIHQV-KPSYNSSSTLHCYRVIHTEVKVPLKE-----LVKVVNVNEDGMEY 108
N +H + + + + Y K P + L + V +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-V 157
Query: 109 IDFVGDQTFRPLPEYYPEL---YDQSQCSDMAETVLGLQFIHSPAQVCLSVQSSHLRC-- 163
F G Q +Y+ EL Y ++G I A+ + + L
Sbjct: 158 AIF-GGQG--NTDDYFEELRDLYQTYH------VLVG-DLIKFSAETLSELIRTTLDAEK 207
Query: 164 HYSALSRVYAVLRDFSSR----Y-----------G-GQL-----TLKNTGLS---MTRAL 199
++ + L + S+ Y G QL T K G + + L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 200 YGATKEFDEKVEVWTKVK-LAPGAQLKLVHTNLSFEKKSCRVLWEYSHLTPPRPSTFAPG 258
GAT + L + + SF + + F G
Sbjct: 268 KGAT----------GHSQGLVTAVAIAETDSWESFFVSVRKAI-TVL---------FFIG 307
Query: 259 C------PQRSLEPPAILDTLEHFE--------VRMLPHCELSS-----NGTYQPSYSHF 299
P SL P + D+LE+ E + L ++ N ++ P+
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQV 366
Query: 300 TFARKQLRRNKIAHNYPSDLIR---YLRPSMTSIDEDFKKAVEDVKTLTKRPTDEELLEI 356
+ +N + P L LR K ++ P E L+
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLR----------KAKAPSGLDQSRIPFSERKLKF 416
Query: 357 YALF 360
F
Sbjct: 417 SNRF 420
Score = 48.9 bits (116), Expect = 2e-06
Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 54/202 (26%)
Query: 226 LVHTNLSFEKKSCRVLWE-YSHLTPPRPSTFAPGCPQRSLEPPAILDTLEHFEVRMLPHC 284
LV T F L E ++ + P FA EP + + F L +
Sbjct: 21 LVPTASFF---IASQLQEQFNKILPEPTEGFAA-----DDEPTTPAELVGKF----LGYV 68
Query: 285 ----ELSSNGTYQP----SYSHFTFARKQLRRNKIAHNYPSDLIRYLRPSMTSIDEDFKK 336
E S G + + F L N I H L L + K+
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDI-H----ALAAKLLQENDTTLVKTKE 121
Query: 337 AVE---DVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGT 393
++ + + KRP D++ ALF+ EG+ ++F G
Sbjct: 122 LIKNYITARIMAKRPFDKK--SNSALFRAVGEGNAQLV--AIFG--------------G- 162
Query: 394 SSDQ-AKQDYVKKVQELLAKYQ 414
Q DY +++++L Y
Sbjct: 163 ---QGNTDDYFEELRDLYQTYH 181
Score = 36.6 bits (84), Expect = 0.018
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 20/90 (22%)
Query: 298 HFTFARKQLRRNKIAHNYPSDLIRYLRPSMTSIDEDFKKAVEDVKTLTKRPTDEELLEIY 357
HF + + +I NY + + + ++ FK+ E + T R ++ LL
Sbjct: 1675 HFGGEKGK----RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-EKGLL--- 1726
Query: 358 ALFKQATEGDNT-----TARPSMFN-LKAK 381
AT+ T + F LK+K
Sbjct: 1727 ----SATQ--FTQPALTLMEKAAFEDLKSK 1750
Score = 30.4 bits (68), Expect = 1.3
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 9 TLTWSASLLRLPVSVKLYNT-----LHTSGKAFIQQVKPLYIRTPV 49
++++A +++PV Y+T L + +++ IR PV
Sbjct: 447 NVSFNAKDIQIPV----YDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 29.6 bits (66), Expect = 2.8
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 17/101 (16%)
Query: 10 LTWSASLLRLPVSVKLYNTLHTSGKAFIQQVKPLYIRTPVGVKLYNTLHTTGKTFIHQVK 69
L A ++ + V++ + G +Q P R +G Y + +
Sbjct: 1770 LASLADVMSIESLVEV---VFYRGMT-MQVAVP---RDELGRSNYG---------MIAIN 1813
Query: 70 PS-YNSSSTLHCYRVIHTEVKVPLKELVKVVNVNEDGMEYI 109
P +S + + + V LV++VN N + +Y+
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-06
Identities = 49/377 (12%), Positives = 101/377 (26%), Gaps = 114/377 (30%)
Query: 62 KTFIHQVKPSYNSSSTLHCYRVIHT--EVKVPLKELVK--------VV--NV-NEDGMEY 108
+ ++Q+ P++ S S H + ++ L+ L+K +V NV N
Sbjct: 203 QKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 109 IDF-----------------VGDQTFRPLPEYYPELYDQSQCSDMAETVLGLQFIHSPAQ 151
+ T +++ + + L + P +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 152 VCLSVQSSHLRCHYSALSRVYAVLRDFSSRYGGQLTLKNTGLSMT-------------RA 198
V + LS + +RD + + + L+ R
Sbjct: 322 VL--------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 199 LYGATKEFDEKVEVWTKVKLAPGAQLKLVHTNLSFE----------KKSCRVLWEYSHLT 248
++ F + T + L L+ ++ K S
Sbjct: 374 MFDRLSVFPPSAHIPTIL-------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ------ 420
Query: 249 PPRPSTFA-PGCPQRSLEPPAILDTL-----EHFEV-RMLPHCELSSNGTYQPSYSH--- 298
P+ ST + P L +H+ + + +L Q YSH
Sbjct: 421 -PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 299 --------------------FTFARKQLRRNKIAHNYPS-------DLIRYLRPSMTSID 331
F F +++R + A N L Y +P + D
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDND 538
Query: 332 EDFKKAVEDVKTLTKRP 348
+++ V + +
Sbjct: 539 PKYERLVNAILDFLPKI 555
Score = 45.2 bits (106), Expect = 3e-05
Identities = 61/446 (13%), Positives = 137/446 (30%), Gaps = 133/446 (29%)
Query: 24 KLYNTLHTSG----KAFIQQV-KPLY--IRTPVGVKLYNTLHTTGKTFIHQVKPSYNSSS 76
+L+ TL + + F+++V + Y + +P+ + + +I Q YN +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 77 TLHCYRV----IHTEVKVPLKELVKVVNVNEDGME------------------------- 107
Y V + +++ L EL NV DG+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 108 -YIDFVGDQTFRPLPEYYPELY---DQSQCS------------DMAETVLGLQFIHSPAQ 151
+++ + + E +L D + S + L P +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 152 VCL----SVQSSH------LRCHYSALSRVYAVLRDFSSRYGGQLTLKNTGLSMTR---- 197
CL +VQ++ L C +R V S+ ++L + +++T
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 198 ---ALYGATKEFDEKVEVWTKVKLAPGAQLKLVHTNLSFEKKSCRVLWE-YSHLTPPRPS 253
Y + D EV + P + ++ + W+ + H+ + +
Sbjct: 305 SLLLKYLDCRPQDLPREV---LTTNP-----RRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 254 TFAPGCPQRSLEPPAILDTLEHFEVRMLPHCELSSNGTYQPSYSHFTFARKQLRRNKIAH 313
T + SL +L+ E Y+ + + I
Sbjct: 357 TII----ESSLN---VLEPAE-----------------YRKMFDRLSVFPPSA---HI-- 387
Query: 314 NYPSDLIRYLRPSMTSIDEDFKKAVEDV------KTLTKRPTDEELLEIYAL-FKQATEG 366
P+ L+ + + D V V +L ++ E + I ++ + +
Sbjct: 388 --PTILLSLIWFDVIKSD------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 367 DNTTARPSM-------FNLKAKYKWE 385
+N ++ +N+ + +
Sbjct: 440 EN---EYALHRSIVDHYNIPKTFDSD 462
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans;
5-methyltetrahydrofolate,methyltransferase, TIM barrel,
STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A
{Bacteroides thetaiotaomicron}
Length = 300
Score = 30.6 bits (70), Expect = 0.83
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 316 PSDLIRYLRPSMTSIDEDFKKAVEDVKTLTKRP-TDEELLEIYALFKQATEG 366
P + Y + I D + +EDV L +RP E L+E+ K+ G
Sbjct: 255 PGTSVLY-----SDIPADTLEKIEDV-VLNRRPDAAERLIELAEALKETMGG 300
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P,
ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast,
tRNA; 2.70A {Saccharomyces cerevisiae}
Length = 140
Score = 28.9 bits (64), Expect = 1.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 166 SALSRVYAVLRDFSSRYGGQLTLKNTGLSMTRALYGA---TKEFDEKVEVWTK 215
SAL R+ L + + + G ++ + L + ++K+EV+TK
Sbjct: 43 SALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKNKKIEVYTK 95
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 29.5 bits (66), Expect = 2.3
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 14/75 (18%)
Query: 349 TDEELLEIYALFKQATEGD--NTTARPSMFNLK-------AKYKWE-----CWTKLKGTS 394
+ ++ E Q G + +LK K K E S
Sbjct: 202 SFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMS 261
Query: 395 SDQAKQDYVKKVQEL 409
+AK YVK + L
Sbjct: 262 EIEAKVRYVKLARSL 276
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 28.7 bits (64), Expect = 2.8
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 14/75 (18%)
Query: 349 TDEELLEIYALFKQATEGDN--TTARPSMFNLK-------AKYKWE-----CWTKLKGTS 394
+ ++ E Q G + + +LK K K E S
Sbjct: 48 SFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMS 107
Query: 395 SDQAKQDYVKKVQEL 409
+AK YVK + L
Sbjct: 108 EIEAKVRYVKLARSL 122
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 28.3 bits (63), Expect = 4.1
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 14/75 (18%)
Query: 349 TDEELLEIYALFKQATEGD-NTTARPSMFNLKAKY--------KWE-----CWTKLKGTS 394
+ ++ E Q G N F + K E S
Sbjct: 37 SFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMS 96
Query: 395 SDQAKQDYVKKVQEL 409
+AK YVK + L
Sbjct: 97 EIEAKVRYVKLARSL 111
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 28.2 bits (64), Expect = 4.9
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 338 VEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSM 375
++ + K P+ E E+ F++A + + + +
Sbjct: 242 IDLTVVVNKAPSSVE--EVNEKFREAAQKYRESGKVYL 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 8.7
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 399 KQDYVKKVQELLAKY 413
KQ +KK+Q L Y
Sbjct: 19 KQA-LKKLQASLKLY 32
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome,
ribosomal R ribosomal protein, STM1; 3.00A
{Saccharomyces cerevisiae} PDB: 3izc_s 3izs_s 3j16_G*
3o5h_M 3jyw_8
Length = 312
Score = 27.4 bits (60), Expect = 9.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 397 QAKQDYVKKVQELLAKYQ 414
+ K +Y K++E L +Y+
Sbjct: 6 EKKAEYFAKLREYLEEYK 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.397
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,212,357
Number of extensions: 360367
Number of successful extensions: 969
Number of sequences better than 10.0: 1
Number of HSP's gapped: 955
Number of HSP's successfully gapped: 32
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)