RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9651
(414 letters)
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 86
Score = 120 bits (302), Expect = 4e-34
Identities = 42/82 (51%), Positives = 55/82 (67%)
Query: 332 EDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLK 391
+F KA E+VK L +P DEE+L IY+ +KQAT GD T RP M + K K KW+ W +LK
Sbjct: 3 AEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELK 62
Query: 392 GTSSDQAKQDYVKKVQELLAKY 413
GTS + A + Y+ KV+EL KY
Sbjct: 63 GTSKEDAMKAYIDKVEELKKKY 84
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 111 bits (280), Expect = 5e-31
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 330 IDEDFKKAVEDVKTLTKRP--TDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECW 387
+ + F++ V + L + +E L++Y +KQ+T G+ PS + K+E W
Sbjct: 2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAW 61
Query: 388 TKLKGTSSDQAKQDYVKKVQELLAKYQ 414
++ + + A++ YV V E+ +Q
Sbjct: 62 KSVENLNREDAQKRYVDIVSEIFPYWQ 88
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 29.9 bits (67), Expect = 0.19
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 12/73 (16%)
Query: 349 TDEELLEIYALFKQATEGDNTTA-------RPSMFNLKAKYKW-----ECWTKLKGTSSD 396
+ L + + Q+ GD + E + +
Sbjct: 31 SFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPA 90
Query: 397 QAKQDYVKKVQEL 409
QA ++++ ++L
Sbjct: 91 QADLEFLENAKKL 103
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 28.3 bits (63), Expect = 0.62
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 14/75 (18%)
Query: 349 TDEELLEIYALFKQATEGD--NTTARPSMFNLK------------AKYKWECWTKLKGTS 394
+ ++ E Q G +P LK + + S
Sbjct: 37 SFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMS 96
Query: 395 SDQAKQDYVKKVQEL 409
+AK YVK + L
Sbjct: 97 EIEAKVRYVKLARSL 111
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 126
Score = 28.1 bits (62), Expect = 1.0
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 348 PTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAK-QDYVKKV 406
TD + + YA+ + ++ P L + + + G ++D+A + K+
Sbjct: 2 QTDSKNISQYAIMAIGMQVEDHQFDPVASKL---AFEQIFKSIYGLTTDEAVVAEEEAKL 58
Query: 407 QELLAKYQ 414
++L Y+
Sbjct: 59 AKVLDVYE 66
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 27.5 bits (61), Expect = 1.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 385 ECWTKLKGTSSDQAKQDYVKKVQEL 409
+ + +G + D+A+ +Y+K Q+L
Sbjct: 87 AWYAEHRGRARDEAEMEYLKIAQDL 111
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 27.2 bits (60), Expect = 1.7
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 385 ECWTKLKGTSSDQAKQDYVKKVQEL 409
+ +G + A +Y+K Q+L
Sbjct: 87 VWHEEHRGMLREDAVLEYLKIAQDL 111
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris
suum) [TaxId: 6253]}
Length = 147
Score = 27.2 bits (60), Expect = 2.5
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 232 SFEKKSCRVLWEYSHLTPPRPSTFAPGCPQRSLEPPA 268
+F +K E PP P L PP
Sbjct: 105 TFREKI-AAFEEQQENQPPSSGMPHGAVPAGGLSPPP 140
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 166
Score = 26.5 bits (58), Expect = 4.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 347 RPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDY 402
PTDEEL+ Y L ++A D + + +L YK++ W L + K+ Y
Sbjct: 24 YPTDEELMVQY-LCRKAAGYDFSLQLIAEIDL---YKFDPWV-LPNKALFGEKEWY 74
>d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 168
Score = 26.0 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 296 YSHFTFARKQLRRNKIAHNYPSDLIRYLRPSMTSIDEDFKKAVEDVKTLTKRPTDEELLE 355
Y + A + + K+A RP+ E K++ E TDE++L
Sbjct: 76 YYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSKEAATLKGFNGTDEDVL- 134
Query: 356 IYALFKQ 362
YALF Q
Sbjct: 135 TYALFPQ 141
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator
PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 215
Score = 25.9 bits (56), Expect = 7.4
Identities = 3/45 (6%), Positives = 13/45 (28%)
Query: 321 RYLRPSMTSIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATE 365
Y + ++ V ++ + + +F ++
Sbjct: 158 IYREWGKVYLSNEYLNLVGRLRKIIDSSGHSGYDRLRRIFITGSK 202
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 26.0 bits (56), Expect = 7.9
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 15/79 (18%)
Query: 299 FTFARKQLRRNKIAHNYPSDLIR-----------YLRPSMTSIDEDFKKAVEDVKTLTKR 347
F K L + L+ + P SI + ++ + KR
Sbjct: 196 FVRKNKTLSAA-FKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFSDKR 254
Query: 348 P---TDEELLEIYALFKQA 363
++ + + F
Sbjct: 255 ARSMDIDDFIRLLHGFNAE 273
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.397
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,534,949
Number of extensions: 71850
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 14
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)