BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9655
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
S C C+RAF ++ L RH RSHT EKP+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPY 31
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 47 TDRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
+D + R C C ++F + DLTRH R+HT EKP+K
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 42 VSEPPTDRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
+SE + +V+ P +C C ++F + L H R+HT EKP+K
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKC 52
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C ++F +R++L H R+HT EKP+
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C ++F + +L H R+HT EKP+K
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
+C C ++F + + L H R+HT EKP+K
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F + +DLTRHIR HT +KPF+ R
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCR 38
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F + +LTRHIR HT +KPF+ R
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCR 53
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHT 86
C C R F + LT HIR+HT
Sbjct: 50 FQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C YC +AF ++L RH R HT EKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F + ++LTRHIR HT +KPF+ R
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCR 38
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F S+LTRHIR HT +KPF+ R
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCR 38
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C ++F SDL++H R+HT EKP+K
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKC 49
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF +RS L H R HT P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C ++F + SDL +H R+HT EKP+K
Sbjct: 35 CPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C ++F + S+L +H R+HT EKP+K
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKC 35
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
CT C +AF RS+L +H + HT EKP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F + +LTRHIR HT +KPF+ R
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCR 37
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F + +LTRHIR HT +KPF+ R
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCR 38
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F + +LTRHIR HT +KPF+ R
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCR 38
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 32
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF ++++LT+H R HT EKP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF+ +S L H+R+HT EKP
Sbjct: 12 GCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + + L +HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F ++++L HIR HT +KPF+ R
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCR 38
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C+YC + F+ L H+R+HT EKP+K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKC 35
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C +AF + S L +H R HT EKP+K
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKC 45
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C +AF + S L H R HT
Sbjct: 45 CLECGKAFSQNSGLINHQRIHT 66
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F + LTRHIR HT +KPF+ R
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCR 38
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F + LT HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 55 RPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKVR 94
RP P C YC + F ++SD+ +H HT EKP K +
Sbjct: 28 RPYP------CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
S C C ++FK+ S L+ H+ H+ +P+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPY 30
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C R F +++ L HIR+HT EKPF
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C R F ++++L HIR HT +KPF+ R
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCR 38
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEK 89
S C C+RAF ++ L RH RSHT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEK 89
S C C+RAF ++ L RH RSHT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AFK +S L H RSHT EKP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEK 89
S C C+RAF ++ L RH RSHT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF +S+L H R+HT EKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF + S L RH R HT EKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C CS+AF +++ L +H ++HT EKP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF RS+L +H + HTK+KP
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF + S L RH R HT EKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
CT C +AF ++S L+ H + HT EKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF +S L H+R+H+ EKP
Sbjct: 14 GCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S LT H R HT EKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEK 89
+C YC++ FK + L H+R HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF ++S L H R HT EKP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPFKVRS 95
+C+ C F++R +L H+ SHT E P+K S
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
+ C C + F + L H R HT EKPF+
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFEC 38
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFKV 93
C Y C++ + K S L H+R+HT EKP+K
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC 48
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFKV 93
CT+ C F + +LTRH R HT KPF+
Sbjct: 48 CTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEK 89
CT+C ++F+ + +L H R HT EK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F ++S L RH R HT EKP
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKVRSL 96
C C + F ++ L H+R HT KP+K ++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTC 42
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C C A S L +H+R H+ E+PFK +
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF++ L H+R HT EKP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +++ +R LT+H R HT EKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F ++S L+ H R+HT EKP
Sbjct: 14 GCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C C R F + L H R+HT EKPF R
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVRSL 96
C R F + L RH R HT KPF+ ++
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 63 LSCTY--CSRAFKKRSDLTRHIRSHTKEKPFKV 93
C Y C++ + K S L H R HT EKP++
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEK 89
C C + F +RS L H+R H++EK
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF RS+L H + HT EKP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C +AF + S L RH HT EKPF+
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQC 65
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF+ S+LT H HT EKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F+ S L+RH R HT EKP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
S C C R F +S L +H R HT EKP
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF+ RS L H +H+ EKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 48 DRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKVR 94
+RT + RP +C C +AF+++ L H H+KEKPFK +
Sbjct: 37 ERTHTDERPY------TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 56 PVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
P C +C R F K +L H R+HT E+P+
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPY 46
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
L C C + F++ S L++H R H+ EKP
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C ++F K+S L H + HT EKP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F +RS L H + HT EKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 48 DRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
DR +S + + P C C + FK + L H++ HT KP++
Sbjct: 26 DRHMSMHLGLRP---YGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF + + L +H R HT EKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF ++ L HIR HT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF + LT+H R H+ EKP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 49 RTVSYNRPVP-PNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
R + +P P P P C + F + +L H R+HT EKPFK
Sbjct: 83 RVHTGEKPFPCPFPG-----CGKIFARSENLKIHKRTHTGEKPFKC 123
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 69 SRAFKKRSDLTRHIRSHTKEKPF 91
++FK + L HIR HT EKPF
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPF 91
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C +AF + S L H+R HT EK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C + +K+R DL H R HT EK
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKE 88
SC C +AF + L +H+R HT+E
Sbjct: 14 SCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F RS L RH HT EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF RS LT H HT +KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKP 90
+C C +AF S L H R HT EKP
Sbjct: 14 NCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF +S L H ++H +EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
CT C +AF +S L H R+HT E
Sbjct: 13 CTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 64 SCTY--CSRAFKKRSDLTRHIRSHTKEKPFKV 93
+C Y C + + K S L H+R+HT EKP+
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 39
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C F + +LTRH R HT +PF+ +
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQ 70
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L++H + HT EKP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF L +H R HT EKP
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
++C C + F+ L RH SH+ EKP+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C++ F +S L H RSHT KP
Sbjct: 14 GCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C +AF+ RS+LT H HT EK
Sbjct: 15 CYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F+ S LT H R HT EKP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S LT H R HT EKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 64 SCTY--CSRAFKKRSDLTRHIRSHTKEKPFKV 93
+C Y C + + K S L H+R+HT EKP+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C F + +LTRH R HT +PF+ +
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQ 69
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF S LT H HT EKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 65 CTYCSRAFKKRSDLTRHIRS 84
CTYC+ +FK + +LT+H++S
Sbjct: 32 CTYCNFSFKTKGNLTKHMKS 51
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 60 NPSLSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
NP C C +AF ++ L H R+H EKP
Sbjct: 11 NP-YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF ++S L+ H R H EKP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C +C R F L RH+R HT EK
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
++C C + F+ L RH SH+ EKP+
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPY 36
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKE--KPFKVRSL 96
SC C FK++ ++ H+RSH KP+ +S
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 71
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F S L H R HT EKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F++RS L H HT EKP
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F++ S L RH HT EKP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2VED|A Chain A, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
pdb|2VED|B Chain B, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
Length = 271
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 38 QNQIVSEPPTDRTVSYNRPVPPNPSLSCTYCSRAFKKRSD 77
Q+ I+S D V + P+PPNPS T SRAF D
Sbjct: 149 QDSIISTEIEDLDVLTSGPIPPNPSELIT--SRAFANLYD 186
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 38 QNQIVSEPPTDRTVSYNRPVPPNPSLSCTYCSRAFKKRSD 77
Q+ I+S D V + P+PPNPS T SRAF D
Sbjct: 149 QDSIISTEIEDLDVLTSGPIPPNPSELIT--SRAFANLYD 186
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L RH R HT KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L RH HT EKP
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L RH HT EKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPF 91
C + + K S L H R+HT EKPF
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPF 48
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPF 91
CT+ C +++ + +L H+RSHT EKP+
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 70 RAFKKRSDLTRHIRSHTKEKPFKV 93
R FK + L H+R HT EKP K
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKC 70
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C ++F LT+H +HT+EKP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF R L+ H R H+ +KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L RH HT EKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C ++F K+S L H R HT E P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F + + L +H R HT EKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF S T+H R HT ++P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C +AF +S+L H R+HT E
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 65 CTYCSRAFKKRSDLTRHIRS 84
C+YC+ +FK + +LT+H++S
Sbjct: 5 CSYCNFSFKTKGNLTKHMKS 24
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 65 CTYCSRAFKKRSDLTRHIR-SHTKEKP 90
C C +AF + + L RH R HT EKP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C +AF+ +S L H R+HT E
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F+++ LT H R HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L H R HT EKP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L H R HT EKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L H R HT EKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 60 NPSLSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
NP + C+ C + F +++L H + HT E+P
Sbjct: 11 NPFI-CSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C + F + S+ +H R HT EKP
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 63 LSCTY--CSRAFKKRSDLTRHIRSHTKEKP 90
+CT+ C F + +L+RH RSH+ KP
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F+ S L +H R H+ EKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 66 TYCSRAFKKRSDLTRHIRSHTKEK 89
+YC + F + +L RH R+HT EK
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C ++F + L H R HT+EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C+ C +AF ++ L H R+H E
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C+ C +AF ++S L H +SHT E+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
CT C +AF ++S H R HT E
Sbjct: 13 CTECGKAFIRKSHFITHERIHTGE 36
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F S H RSH+ EKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C +AF +S L H R HT E
Sbjct: 13 CNECGKAFGLKSQLIIHERIHTGE 36
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKV 93
C +AFKK + L H SHT++ P++
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYEC 34
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 59 PNPSLSCTY--CSRAFKKRSDLTRHIRSHTKEK 89
P+ + C + C++ FK+R ++ HI++H +++
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKP 90
SC C +AF +S L H HT KP
Sbjct: 12 SCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
CT C +AF +S L H R+H +K
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKV 93
C +AFKK + L H SHT++ P++
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYEC 34
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKV 93
C +AFKK + L H SHT++ P++
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYEC 137
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPF 91
C A+ K L H+ HT EKPF
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPF 43
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVRS 95
C + F LTRH +HT EK F S
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 462
Length = 88
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 48 DRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKE 88
D + N P N + C +C + ++LT H+ H +E
Sbjct: 11 DFIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F R DL H HT EKP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C + F + S L H R HT KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPF 91
C A+ K L H+ HT EKPF
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPF 34
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFKVRS 95
C + F LTRH +HT EK F S
Sbjct: 41 CEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEKP 90
C +C + ++ S L+RH R+H +P
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRP 32
>pdb|2BW3|A Chain A, Three-Dimensional Structure Of The Hermes Dna Transposase
Length = 534
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 2 VRDLTSVTYVTQRSARLSSGVQRSMESSEKENRENGQNQIVSEPPTDRTVSYNRPVPPNP 61
V DL+S+ +VT R A V +S+ ++ + N + V E + T N P+
Sbjct: 162 VEDLSSIKFVTDRGA----NVVKSLANNIRINCSSHLLSNVLENSFEETPELNXPI---- 213
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTK 87
L+C + FKK ++L +RS K
Sbjct: 214 -LACKNIVKYFKK-ANLQHRLRSSLK 237
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F +R L H R HT P
Sbjct: 13 CKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF+ S L +H H+ E+P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C+ C +AF + S L H R+H+ E
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKV 93
C C +F+ + +L H HT EKP++
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRC 48
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C F + ++L H R H+ EKP
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEK 89
L C C + F +L RH+R H+ EK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C +AF +S L H R HT E
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C +AF + + L H R HT +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEK 89
C C + F + S L H++ H +EK
Sbjct: 14 GCNECGKNFGRHSHLIEHLKRHFREK 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRS-HTKEK 89
+ C YC + F S+L HI++ H+KEK
Sbjct: 2 TYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 60 NPSLSCTYCSRAFKKRSDLTRHIRSHTKE 88
NP C+ C R F +R+ L +H R+H ++
Sbjct: 11 NP-FKCSKCDRVFTQRNYLVQHERTHARK 38
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEK 89
C C + F +S L H R HT EK
Sbjct: 12 GCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C CS A +++L H+R HT EK
Sbjct: 12 CPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F + L +H R H+ EKP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F S L H R HT E P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C + F S L H R HT E P
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 69 SRAFKKRSDLTRHIRSHTKEK 89
++FK + L HIR HT EK
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEK 89
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C YC R+F + RH+ +H +K
Sbjct: 6 CDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEK 89
C C R F + L H R+HT EK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSH 85
SC C FK++ ++ H+RSH
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSH 33
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 65 CTYCSRAFKKRSDLTRHIRSH 85
C C R+F ++S L+RH R H
Sbjct: 4 CGLCERSFVEKSALSRHQRVH 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.124 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,510,420
Number of Sequences: 62578
Number of extensions: 81395
Number of successful extensions: 384
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 222
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)