RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9655
(96 letters)
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 49.0 bits (118), Expect = 1e-09
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C+RAF ++ L RH RSHT EKP+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYP 32
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 65 CTYCSRAFKKRSDLTRHI-RSHTKEK 89
C C+RAF +R L RH + H+
Sbjct: 33 CGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.2 bits (117), Expect = 2e-09
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C ++FK + L HIR HT EK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGP 92
Score = 33.0 bits (75), Expect = 0.004
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 43 SEPPTDRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHI-RSHTKEKPFK 92
S P + +S S C R F +L H+ H
Sbjct: 6 SGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN 56
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 47.2 bits (113), Expect = 9e-09
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + C +AFKK + L H SHT++ P++
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYE 33
Score = 39.9 bits (94), Expect = 5e-06
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + C + F S L RH + H K
Sbjct: 34 CPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Score = 27.2 bits (61), Expect = 0.39
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 65 CTYCSRAFKKRSDLTRHI-RSH 85
CS K + +H+ H
Sbjct: 64 DDSCSFVGKTWTLYLKHVAECH 85
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 48.4 bits (116), Expect = 1e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C ++FK + L HIR HT EKPF
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFP 92
Score = 43.8 bits (104), Expect = 6e-07
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C R F +L H+ P +
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQ 55
Score = 43.4 bits (103), Expect = 7e-07
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + C + F + +L H R+HT EKPFK
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Score = 41.9 bits (99), Expect = 3e-06
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + C R F SD +H+ HT +K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
Score = 27.6 bits (62), Expect = 0.49
Identities = 0/25 (0%), Positives = 3/25 (12%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
+ + +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRP 27
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 46.7 bits (112), Expect = 2e-08
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C R F + LT HIR+HT EKPF
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Score = 43.2 bits (103), Expect = 3e-07
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C R F + LTRHIR HT +KPF+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQ 36
Score = 41.3 bits (98), Expect = 2e-06
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C R F + + RH + H ++K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 45.5 bits (109), Expect = 4e-08
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C YC + F ++SD+ +H HT EKP K
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Score = 42.8 bits (102), Expect = 4e-07
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++FK+ S L+ H+ H+ +P+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYP 31
Score = 32.4 bits (75), Expect = 0.004
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C +AF + S+L H R HT
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHT 81
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 45.6 bits (109), Expect = 4e-08
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C R F + LT HIR+HT EKPF
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFA 33
Score = 42.9 bits (102), Expect = 4e-07
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C R F + + RH P
Sbjct: 34 CDICGRKFARSDERKRHRDIQH-ILPIL 60
Score = 32.9 bits (76), Expect = 0.003
Identities = 3/28 (10%), Positives = 6/28 (21%), Gaps = 3/28 (10%)
Query: 65 CTYCSRAFKKRSDLTRHI---RSHTKEK 89
K L + + E+
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKLVGER 88
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 45.6 bits (109), Expect = 4e-08
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F+ L RH SH+ EKP+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYS 37
Score = 40.6 bits (96), Expect = 4e-06
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE--KPFK 92
C C FK++ ++ H+RSH KP+
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Score = 33.6 bits (78), Expect = 0.002
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 65 CTYCSRAFKKRSDLTRHI-RSHTKEK 89
C C + F + L HI + H+
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 46.8 bits (112), Expect = 4e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ R FK + L H+R HT EKP K
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHK 69
Score = 42.6 bits (101), Expect = 1e-06
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
CT+ C +++ + +L H+RSHT EKP+
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPYM 99
Score = 39.9 bits (94), Expect = 1e-05
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 65 CTYCSRAFKKRSDLTRHI---RSHTKEKPFK 92
CS+ F + L HI H + K F
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFV 36
Score = 38.7 bits (91), Expect = 5e-05
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 65 CTY--CSRAFKKRSDLTRHI-RSHTKEKPFK 92
C + CS+AF SD +H R+H+ EKP+
Sbjct: 100 CEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Score = 31.8 bits (73), Expect = 0.015
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 68 CSRAFKKRSDLTRHIRSHT 86
C++ + S L +H+++
Sbjct: 136 CTKRYTDPSSLRKHVKTVH 154
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 46.0 bits (110), Expect = 5e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF + S L RH HT EKPF+
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Score = 44.0 bits (105), Expect = 2e-07
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C++ F + ++L HI +H K K +
Sbjct: 100 CNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 42.1 bits (100), Expect = 1e-06
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
CT+ C + F +L H+R HT ++P+
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Score = 34.8 bits (81), Expect = 8e-04
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + C++ F+ S + +H+ +H +
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHG-PRVHV 36
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 44.5 bits (106), Expect = 6e-08
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 65 CTYCSRAFKKRSDLTRHIRS--HTKEKPFK 92
C CSR + S+ RH + K +
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYP 42
Score = 35.2 bits (82), Expect = 2e-04
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTK 87
C +C + F ++ ++T H++ K
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIHK 65
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 45.1 bits (108), Expect = 6e-08
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C A + S LT H+RSHT +
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPS 94
Score = 44.3 bits (106), Expect = 1e-07
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F ++ L H+R HT KP+K
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYK 38
Score = 44.3 bits (106), Expect = 1e-07
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C A S L +H+R H+ E+PFK
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFK 66
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 44.8 bits (107), Expect = 6e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ CS + ++ L H R H ++PFK
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFK 39
Score = 38.6 bits (91), Expect = 1e-05
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C YCS K+ S+L++H++ +
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 23.6 bits (52), Expect = 6.4
Identities = 3/10 (30%), Positives = 4/10 (40%)
Query: 83 RSHTKEKPFK 92
S + P K
Sbjct: 2 SSGSSGHPEK 11
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 45.6 bits (109), Expect = 6e-08
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C R F + L H R+HT EKPF
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Score = 42.5 bits (101), Expect = 9e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C++ + K S L H R HT EKP++
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQ 38
Score = 42.5 bits (101), Expect = 1e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C R F + L RH R HT KPF+
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQ 68
Score = 29.8 bits (68), Expect = 0.065
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 68 CSRAFKKRSDLTRHIRSH 85
C + F + +L RH H
Sbjct: 102 CQKKFARSDELVRHHNMH 119
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 7e-08
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L H++ H +EK
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSG 42
Score = 22.9 bits (50), Expect = 7.3
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S + E+P+
Sbjct: 3 SGSSGSGERPYG 14
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 43.5 bits (103), Expect = 7e-08
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C+RAF ++ L RH RSHT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 43.4 bits (102), Expect = 1e-07
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
+C C + F+ L RH SH+ EKP+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 43.3 bits (103), Expect = 1e-07
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C F+ L H+R HT P
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 24.4 bits (54), Expect = 1.9
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 81 HIRSHTKEKPFK 92
S EKP+
Sbjct: 2 SSGSSGGEKPYP 13
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-07
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKVRS 95
C C F L +H+RSH + P S
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 24.9 bits (55), Expect = 1.3
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKPF+
Sbjct: 3 SGSSGTGEKPFQ 14
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.2 bits (103), Expect = 1e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
CT C +AF RS+L +H + HT EKP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 26.3 bits (59), Expect = 0.47
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T E+P+
Sbjct: 2 SSGSSGTGERPYI 14
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 43.0 bits (102), Expect = 2e-07
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 65 CTYCSRAFKKRSDLTRHIRS-HTKEKPFK 92
C C + F + L HI+ HT E+P K
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHK 43
Score = 23.7 bits (52), Expect = 4.2
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 81 HIRSHTKEKPFK 92
S + KP+
Sbjct: 3 SGSSGSVGKPYI 14
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 43.7 bits (104), Expect = 2e-07
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F + L H++ H+ + +
Sbjct: 41 CPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70
Score = 40.6 bits (96), Expect = 3e-06
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 65 CTY--CSRAFKKRSDLTRHIR-SHTKEKPFK 92
C + C R F R L H + H +K F
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS 40
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 2e-07
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F RS L RH HT EKP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 25.9 bits (58), Expect = 0.52
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKPFK
Sbjct: 3 SGSSGTGEKPFK 14
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 3e-07
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF RS+L +H + HTK+KP
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSG 42
Score = 24.8 bits (55), Expect = 1.6
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+
Sbjct: 3 SGSSGTGEKPYI 14
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-07
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF + LT+H R H+ EKP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSG 42
Score = 25.2 bits (56), Expect = 1.2
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP++
Sbjct: 3 SGSSGTGEKPYE 14
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 44.0 bits (105), Expect = 3e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C F++R +L H+ SHT E P+K
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYK 96
Score = 42.9 bits (102), Expect = 9e-07
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + L H R HT EKPF+
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFE 37
Score = 38.3 bits (90), Expect = 4e-05
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 65 CTYCSRAFKKRSDLTRHIRS---HTKEKPFK 92
C C + + ++ +L H + E+ F
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 65 CTYCSRAFKKRSDLTRH-IRSHTKEK 89
C+ CS+ F ++ DL H I+ H+
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF+ S+LT H HT EKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.19
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-07
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + +K+R DL H R HT EK
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSG 42
Score = 26.7 bits (60), Expect = 0.34
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S + EKP+K
Sbjct: 3 SGSSGSGEKPYK 14
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF + + L H R HT +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSG 42
Score = 27.5 bits (62), Expect = 0.14
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + EKP+K
Sbjct: 2 SSGSSGSGEKPYK 14
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 42.8 bits (102), Expect = 3e-07
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +F+ + +L H HT EKP++
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYR 47
Score = 39.0 bits (92), Expect = 1e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C F + ++L H R H+ EKP+
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 30.9 bits (71), Expect = 0.011
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 76 SDLTRHIRSHTKEKPFK 92
H +KP+K
Sbjct: 3 HHHHHHSHMTHSDKPYK 19
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.1 bits (100), Expect = 3e-07
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C F + + L H+ HT P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 25.9 bits (58), Expect = 0.58
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S EKP+K
Sbjct: 2 SSGSSGGEKPYK 13
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 42.9 bits (102), Expect = 4e-07
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C + F +R+ + RH + +
Sbjct: 50 CSKCGKTFTRRNTMARHADNCAGPDGVE 77
Score = 37.9 bits (89), Expect = 4e-05
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE----KPFK 92
C++C + F+++ L H + + F
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFV 49
Score = 29.8 bits (68), Expect = 0.044
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 78 LTRHIRSHTKEKPFK 92
R+HT EKP+
Sbjct: 3 SGSSGRTHTGEKPYA 17
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 42.5 bits (101), Expect = 4e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF + S L +H R HT EKP+K
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYK 44
Score = 40.5 bits (96), Expect = 2e-06
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C +AF + S L H R HT
Sbjct: 45 CLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 28.6 bits (65), Expect = 0.081
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 78 LTRHIRSHTKEKPFK 92
+ H+ EKP+
Sbjct: 2 SSGSSGIHSGEKPYG 16
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 4e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF+ S L +H H+ E+P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSG 42
Score = 27.1 bits (61), Expect = 0.22
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 4e-07
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C YC +AF ++L RH R HT EKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSG 42
Score = 26.3 bits (59), Expect = 0.44
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S + EKP+
Sbjct: 2 SSGSSGSGEKPYV 14
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 42.4 bits (101), Expect = 4e-07
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F SDL++H R+HT EKP+K
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYK 48
Score = 41.3 bits (98), Expect = 1e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF +RS L H R HT P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 31.6 bits (73), Expect = 0.007
Identities = 2/19 (10%), Positives = 5/19 (26%)
Query: 74 KRSDLTRHIRSHTKEKPFK 92
R + + +K
Sbjct: 2 SSGSSGRSEWQQRERRRYK 20
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 41.8 bits (99), Expect = 5e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
CT+C ++F+ + +L H R HT EK
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
Score = 25.2 bits (56), Expect = 1.1
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T +KPF+
Sbjct: 3 SGSSGTGQKPFE 14
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 5e-07
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + + +R +L H R H EK
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSG 42
Score = 27.1 bits (61), Expect = 0.23
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S + EKP+K
Sbjct: 3 SGSSGSVEKPYK 14
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 42.4 bits (100), Expect = 5e-07
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C++ C + + K S L H R+HT EKPF
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFS 49
Score = 27.4 bits (61), Expect = 0.25
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 64 SCTY--CSRAFKKRSDLTRHIRSH 85
SC++ C R F + +L+RH R+H
Sbjct: 49 SCSWKGCERRFARSDELSRHRRTH 72
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 43.2 bits (103), Expect = 5e-07
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF+++ L H H+KEKPFK
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Score = 42.8 bits (102), Expect = 6e-07
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C +C R F K +L H R+HT E+P+
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYT 47
Score = 40.9 bits (97), Expect = 3e-06
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + L H H +
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSPT 103
Score = 32.8 bits (76), Expect = 0.004
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 76 SDLTRHIRSHTKEKPFK 92
S + +K F
Sbjct: 3 SGSSGGRLPSKTKKEFI 19
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.8 bits (99), Expect = 5e-07
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F R DL H HT EKP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSG 42
Score = 25.6 bits (57), Expect = 0.85
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 5e-07
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF RS LT H HT +KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSG 42
Score = 26.0 bits (58), Expect = 0.51
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP++
Sbjct: 2 SSGSSGTGEKPYE 14
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 5e-07
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF++ L H+R HT EKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.15
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + EKPFK
Sbjct: 2 SSGSSGSGEKPFK 14
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 41.4 bits (98), Expect = 5e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF +S L H ++H +EKP
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSG 40
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.3 bits (98), Expect = 6e-07
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF+ +S L H R+HT E
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPS 42
Score = 26.7 bits (60), Expect = 0.30
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 80 RHIRSHTKEKPFK 92
S T KP+
Sbjct: 2 SSGSSGTGMKPYV 14
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 6e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF RS+L H + HT EKP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSG 42
Score = 26.3 bits (59), Expect = 0.35
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP++
Sbjct: 2 SSGSSGTGEKPYR 14
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 6e-07
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F++ S L RH HT EKP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSG 42
Score = 27.8 bits (63), Expect = 0.11
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 44.1 bits (105), Expect = 6e-07
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C A+ K L H+ HT EKPF
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFP 44
Score = 44.1 bits (105), Expect = 6e-07
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C +AFKK + L H SHT++ P++
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYE 136
Score = 43.4 bits (103), Expect = 1e-06
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + F LTRH +HT EK F
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFT 74
Score = 38.0 bits (89), Expect = 1e-04
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + F S L RH + H K
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKK 166
Score = 36.8 bits (86), Expect = 3e-04
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEK--PFK 92
C F ++++ +H K +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYV 106
Score = 26.0 bits (58), Expect = 1.6
Identities = 1/12 (8%), Positives = 2/12 (16%)
Query: 81 HIRSHTKEKPFK 92
K +
Sbjct: 3 EKALPVVYKRYI 14
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 7e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF + L +H+R HT+E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSG 42
Score = 25.6 bits (57), Expect = 0.72
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+
Sbjct: 2 SSGSSGTGEKPYS 14
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 42.8 bits (102), Expect = 7e-07
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + FK + L H++ HT KP++
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Score = 39.3 bits (93), Expect = 1e-05
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C ++F +S RH+ H +P+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYG 39
Score = 37.0 bits (87), Expect = 9e-05
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C++ F R RH+ + K ++
Sbjct: 68 CNICAKRFMWRDSFHRHV--TSCTKSYE 93
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 7e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F+ S L+RH R HT EKP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSG 42
Score = 28.2 bits (64), Expect = 0.066
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.4 bits (98), Expect = 7e-07
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKVRS 95
C C R F +S L +H R HT EKP S
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 24.0 bits (53), Expect = 3.0
Identities = 2/13 (15%), Positives = 4/13 (30%)
Query: 80 RHIRSHTKEKPFK 92
S + K +
Sbjct: 2 SSGSSGSSTKSHQ 14
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 8e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L RH HT EKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 25.5 bits (57), Expect = 0.73
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T +KP+K
Sbjct: 3 SGSSGTGKKPYK 14
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 42.1 bits (100), Expect = 8e-07
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C + + K S L H+R+HT EKP+
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYH 37
Score = 41.4 bits (98), Expect = 2e-06
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
C + C F + +LTRH R HT +PF+
Sbjct: 38 CDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Score = 29.0 bits (66), Expect = 0.095
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 CTYCSRAFKKRSDLTRHIRSH 85
C C RAF + L H++ H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 8e-07
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF S L H R HT EKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.19
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+
Sbjct: 2 SSGSSGTGEKPYN 14
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 8e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF L +H R HT EKP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
Score = 25.9 bits (58), Expect = 0.53
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S T EKPF
Sbjct: 3 SGSSGTGEKPFD 14
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 8e-07
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +++ +R LT+H R HT EKP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.11
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKPFK
Sbjct: 2 SSGSSGTGEKPFK 14
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 9e-07
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AFK +S L H RSHT EKP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSG 42
Score = 25.6 bits (57), Expect = 0.67
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T ++P++
Sbjct: 2 SSGSSGTGQRPYE 14
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 9e-07
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
CT C +AF +S L H R+H +K
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSG 42
Score = 25.2 bits (56), Expect = 0.98
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP K
Sbjct: 2 SSGSSGTGEKPCK 14
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 9e-07
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF R L+ H R H+ +KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSG 42
Score = 25.5 bits (57), Expect = 0.71
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP++
Sbjct: 2 SSGSSGTGEKPYE 14
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.9 bits (97), Expect = 9e-07
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF +S+L H R+HT E
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPS 42
Score = 25.1 bits (56), Expect = 0.96
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP++
Sbjct: 3 SGSSGTGEKPYE 14
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 9e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L RH HT EKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 25.9 bits (58), Expect = 0.53
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 9e-07
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF S LT H HT EKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSG 42
Score = 28.3 bits (64), Expect = 0.064
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 80 RHIRSHTKEKPFK 92
S T KP+
Sbjct: 2 SSGSSGTGVKPYM 14
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F +RS L H+R H++EK
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSG 42
Score = 25.6 bits (57), Expect = 0.81
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + E+PFK
Sbjct: 2 SSGSSGSGERPFK 14
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C ++F LT+H +HT+EKP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSG 42
Score = 24.4 bits (54), Expect = 1.9
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S EKP++
Sbjct: 3 SGSSGEGEKPYQ 14
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
CT C +AF ++S L+ H + HT EKP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSG 42
Score = 25.2 bits (56), Expect = 1.3
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 80 RHIRSHTKEKPFK 92
S T K F+
Sbjct: 2 SSGSSGTGGKHFE 14
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF S T+H R HT ++P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSG 42
Score = 25.6 bits (57), Expect = 0.76
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF+ RS L H +H+ EKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSG 42
Score = 26.3 bits (59), Expect = 0.39
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F +RS L H + HT EKP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSG 42
Score = 25.9 bits (58), Expect = 0.50
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKPFK
Sbjct: 2 SSGSSGTGEKPFK 14
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F ++S L RH R HT EKP
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 25.6 bits (57), Expect = 0.90
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+
Sbjct: 3 SGSSGTGEKPYI 14
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF + S L RH R HT EKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.18
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 41.4 bits (98), Expect = 1e-06
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 64 SCTYCSRAFKKRSDLTRHIRS-HTKEKPF 91
C +C ++SDL H+R H+ P
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 41.0 bits (97), Expect = 2e-06
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKE--KPFK 92
C C F + + HI E F
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFH 47
Score = 31.3 bits (72), Expect = 0.008
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 78 LTRHIRSHTKEKPFK 92
R+H+ EKP++
Sbjct: 3 SGSSGRTHSGEKPYE 17
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 40.6 bits (96), Expect = 1e-06
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C ++F+++ LT H R HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 40.6 bits (96), Expect = 1e-06
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF ++ L H R+H E
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPS 40
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C CS+AF +++ L +H ++HT EKP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSG 42
Score = 26.3 bits (59), Expect = 0.44
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP++
Sbjct: 2 SSGSSGTGEKPYE 14
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF + S L RH R HT EKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSG 42
Score = 25.6 bits (57), Expect = 0.93
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S T KP++
Sbjct: 3 SGSSGTGGKPYQ 14
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF ++ L H R+H EKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSG 42
Score = 25.9 bits (58), Expect = 0.59
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T E P++
Sbjct: 2 SSGSSGTGENPYE 14
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + L +H R HT E+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSG 42
Score = 24.4 bits (54), Expect = 2.0
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + +KP++
Sbjct: 2 SSGSSGSGKKPYE 14
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.5 bits (96), Expect = 1e-06
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF +S+L H R+HT EKP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 27.4 bits (62), Expect = 0.16
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKPF+
Sbjct: 2 SSGSSGTGEKPFE 14
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.5 bits (96), Expect = 1e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L RH HT EKP
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 27.8 bits (63), Expect = 0.096
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F+ S LT H R HT EKP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSG 42
Score = 25.2 bits (56), Expect = 1.0
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 40.2 bits (95), Expect = 1e-06
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C +AF ++ L HIR HT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 25.2 bits (56), Expect = 1.1
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S EKP++
Sbjct: 2 SSGSSGGEKPYR 13
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 41.2 bits (97), Expect = 1e-06
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTK---EKPFK 92
L C C ++++ L H R H + F
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFP 40
Score = 37.0 bits (86), Expect = 7e-05
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C +C + F+K + H
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-06
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF ++++LT+H R HT EKP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 0.31
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP++
Sbjct: 2 SSGSSGTGEKPYR 14
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 40.3 bits (95), Expect = 2e-06
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F +R L H RS ++ P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF ++S L+ H R H EKP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSG 42
Score = 24.4 bits (54), Expect = 2.1
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S T E+ ++
Sbjct: 3 SGSSGTGERHYE 14
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C ++F + L H R HT+EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSG 42
Score = 24.4 bits (54), Expect = 1.9
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 81 HIRSHTKEKPFK 92
S P+K
Sbjct: 3 SGSSGAGVNPYK 14
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L RH R HT KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 25.6 bits (57), Expect = 0.76
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C F + S L H H EKP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSG 42
Score = 24.8 bits (55), Expect = 1.7
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 81 HIRSHTKEKPFK 92
S EK +K
Sbjct: 3 SGSSGMGEKTWK 14
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + + + +L H + HT E+P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSG 42
Score = 25.6 bits (57), Expect = 0.70
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C++ F +S L H RSHT KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSG 42
Score = 26.3 bits (59), Expect = 0.39
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 80 RHIRSHTKEKPFK 92
S T KP+
Sbjct: 2 SSGSSGTGVKPYG 14
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C ++F K+S L H + HT EKP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 26.0 bits (58), Expect = 0.59
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP++
Sbjct: 2 SSGSSGTGEKPYE 14
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF +S L H+R+H+ EKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSG 42
Score = 26.7 bits (60), Expect = 0.26
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 80 RHIRSHTKEKPFK 92
S EKP+
Sbjct: 2 SSGSSGAGEKPYG 14
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF + + L +H R HT EKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSG 42
Score = 26.3 bits (59), Expect = 0.42
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP++
Sbjct: 2 SSGSSGTGEKPYE 14
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 41.5 bits (98), Expect = 2e-06
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
CT+ C F + +LTRH R HT KPF+
Sbjct: 48 CTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Score = 40.7 bits (96), Expect = 4e-06
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 67 YCSRAFKKRSDLTRHIRSHTKEKPFK 92
C++ + K S L H+R+HT EKP+K
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYK 47
Score = 31.1 bits (71), Expect = 0.018
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C+R+F + L H++ H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C + F +++L H + HT E+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSG 42
Score = 25.5 bits (57), Expect = 0.92
Identities = 5/12 (41%), Positives = 5/12 (41%)
Query: 81 HIRSHTKEKPFK 92
S T E PF
Sbjct: 3 SGSSGTGENPFI 14
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L H R HT KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSG 42
Score = 27.5 bits (62), Expect = 0.16
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S LT H R HT EKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.13
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + EKP+K
Sbjct: 2 SSGSSGSGEKPYK 14
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 40.2 bits (95), Expect = 2e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L++H + HT EKP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.13
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T EK +K
Sbjct: 2 SSGSSGTGEKRYK 14
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 39.9 bits (94), Expect = 2e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F+ S L +H R H+ EKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSG 42
Score = 26.8 bits (60), Expect = 0.28
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+
Sbjct: 2 SSGSSGTGEKPYN 14
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.8 bits (94), Expect = 2e-06
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F ++ L H ++H+ +
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPS 42
Score = 22.8 bits (50), Expect = 7.2
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S T E P++
Sbjct: 3 SGSSGTGENPYE 14
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F ++S L+ H R+HT EKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSG 42
Score = 25.6 bits (57), Expect = 0.89
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S + EKP+
Sbjct: 3 SGSSGSGEKPYG 14
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C ++F +S L H + HT E+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSG 42
Score = 25.2 bits (56), Expect = 0.97
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP+K
Sbjct: 3 SGSSGTGEKPYK 14
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C ++F K+S L H R HT E P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSG 42
Score = 24.4 bits (54), Expect = 2.1
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T EKP++
Sbjct: 3 SGSSGTGEKPYE 14
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-06
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF ++S L H R HT EKP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSG 42
Score = 25.5 bits (57), Expect = 0.92
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T E+ ++
Sbjct: 2 SSGSSGTGERHYE 14
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 39.8 bits (94), Expect = 3e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F S L H R HT EKP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.19
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKPF+
Sbjct: 2 SSGSSGTGEKPFE 14
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 39.6 bits (93), Expect = 3e-06
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 64 SCTY--CSRAFKKRSDLTRHIRSHTKEKPFK 92
+CT+ C F + +L+RH RSH+ KP
Sbjct: 14 ACTWPGCGWRFSRSDELSRHRRSHSGVKPSG 44
Score = 27.3 bits (61), Expect = 0.22
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
S T EKPF
Sbjct: 3 SGSSGTGEKPFA 14
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 42.0 bits (100), Expect = 3e-06
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F + DLTRH R+HT EKP+K
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Score = 42.0 bits (100), Expect = 4e-06
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F +R++L H R+HT EKP+
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYA 107
Score = 41.7 bits (99), Expect = 5e-06
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F + +L H R+HT EKP+K
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYK 163
Score = 41.3 bits (98), Expect = 7e-06
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F + L H R+HT EKP+K
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYK 51
Score = 40.9 bits (97), Expect = 9e-06
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F + + L H R+HT EKP+K
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Score = 39.0 bits (92), Expect = 4e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C ++F +R L H R+HT +K
Sbjct: 164 CPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 35.5 bits (83), Expect = 7e-04
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 71 AFKKRSDLTRHIRSHTKEKPFK 92
+ S EKP+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYA 23
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 3e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L H R HT EKP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSG 42
Score = 26.7 bits (60), Expect = 0.31
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + EKPF+
Sbjct: 2 SSGSSGSGEKPFQ 14
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F S L H R HT E P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSG 42
Score = 26.7 bits (60), Expect = 0.25
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP +
Sbjct: 2 SSGSSGTGEKPHE 14
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F + L +H R H+ EKP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSG 42
Score = 25.2 bits (56), Expect = 1.0
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 81 HIRSHTKEKPFK 92
S T EK +
Sbjct: 3 SGSSGTGEKLYN 14
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.5 bits (93), Expect = 4e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F S H RSH+ EKP
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSG 42
Score = 26.0 bits (58), Expect = 0.64
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S + EKPFK
Sbjct: 3 SGSSGSGEKPFK 14
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C+ C +AF ++S L H +SHT E+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSG 42
Score = 27.1 bits (61), Expect = 0.23
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S T EKP+K
Sbjct: 2 SSGSSGTGEKPYK 14
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.4 bits (93), Expect = 4e-06
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKVRS 95
C+ C + F + S+ +H R HT EKP S
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 0.99
Identities = 2/13 (15%), Positives = 4/13 (30%)
Query: 80 RHIRSHTKEKPFK 92
S E+ +
Sbjct: 2 SSGSSGHGERGHR 14
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C ++F + + L +H R HT EKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.17
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 80 RHIRSHTKEKPFK 92
S T E+P K
Sbjct: 2 SSGSSGTGERPHK 14
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L H R HT EKP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
Score = 25.6 bits (57), Expect = 0.78
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 81 HIRSHTKEKPFK 92
S EK +K
Sbjct: 3 SGSSGMGEKCYK 14
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 5e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S L H R HT EKP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.13
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + EKPFK
Sbjct: 2 SSGSSGSGEKPFK 14
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 5e-06
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C + F + S LT H R HT EKP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSG 42
Score = 25.5 bits (57), Expect = 0.71
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 81 HIRSHTKEKPFK 92
S +K FK
Sbjct: 3 SGSSGAGKKLFK 14
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 38.7 bits (91), Expect = 7e-06
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C +AF +S L H R+H
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPS 42
Score = 26.7 bits (60), Expect = 0.26
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 80 RHIRSHTKEKPFK 92
S + EKP++
Sbjct: 2 SSGSSGSGEKPYE 14
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 39.2 bits (92), Expect = 9e-06
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C R F + +LTRHIR HT +KPF+
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQ 51
Score = 30.4 bits (69), Expect = 0.022
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C R F + LT HIR+HT
Sbjct: 52 CRICMRNFSRSDHLTTHIRTHT 73
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 37.5 bits (88), Expect = 2e-05
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 65 CTYCSRAFKKRSDLTRHIRS-HTKEKPFK 92
C C +AF + + L RH R HT EKP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSG 43
Score = 24.8 bits (55), Expect = 1.5
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 81 HIRSHTKEKPFK 92
S T +KP++
Sbjct: 3 SGSSGTGKKPYE 14
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.0 bits (84), Expect = 9e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C +AF + LTRH + HT++
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSG 40
Score = 24.8 bits (55), Expect = 1.4
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 81 HIRSHTKEKPFK 92
S T K +
Sbjct: 3 SGSSGTDSKSYN 14
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPF 91
C C + F S L H R H EK
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCS 41
Score = 23.3 bits (51), Expect = 5.0
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 81 HIRSHTKEKPFK 92
S + EK
Sbjct: 3 SGSSGSGEKSHT 14
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 34.6 bits (80), Expect = 3e-04
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEK 89
C C + + K S L H+R HT E+
Sbjct: 11 CHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 34.4 bits (78), Expect = 3e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEK 89
+C YC++ FK + L H+R HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 34.7 bits (79), Expect = 4e-04
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C C KK S L +HIR+HT +P+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYH 31
Score = 32.0 bits (72), Expect = 0.003
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEK 89
CTYC+ +FK + +LT+H++S K
Sbjct: 31 HCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 34.2 bits (79), Expect = 4e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKP 90
SC C F + L +H + HT +
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSG 38
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.1 bits (78), Expect = 5e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C+ C R F +R+ L +H R+H ++
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.0 bits (76), Expect = 8e-04
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 64 SCTY--CSRAFKKRSDLTRHIRSHTKEK 89
CT+ C + F + +L RH R+HT EK
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 32.4 bits (73), Expect = 0.002
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C +C R F L RH+R HT EK
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTGEK 30
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 33.2 bits (75), Expect = 0.004
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 43 SEPPTDRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHI--RSHTKEKPFK 92
S+P + L C YC +F+ DL+ H+ H ++
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 29.0 bits (64), Expect = 0.14
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRS--HTKEKPFK 92
C CS A+ +LT H+ H ++ +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE 51
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.8 bits (72), Expect = 0.004
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 46 PTDRTVSYNRPVPPNPSLSCTY--CSRAFKKRSDLTRHIRSHTKEK 89
P Y + +P C + C++ FK+R ++ HI++H +++
Sbjct: 3 PRGSIDKYVKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 30.5 bits (68), Expect = 0.008
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C +AF + S L H+R HT EK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.9 bits (74), Expect = 0.010
Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 10/96 (10%)
Query: 4 DLTSVTYVTQRSARLSSGVQRSMESSEKENRENGQNQIVSEPPTDRTVSYNRPVPPNPSL 63
D S + S +N + +S + T + P L
Sbjct: 112 DTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGL 171
Query: 64 ----------SCTYCSRAFKKRSDLTRHIRSHTKEK 89
C CS DL H+ SH
Sbjct: 172 PPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.020
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 32/110 (29%)
Query: 2 VRDLTSVTYVTQRSARL--------SSGVQRSMESSEKENRENGQNQIVSEP--PTDRTV 51
+ + + RL VQ+ +E + N + + I +E P+ T
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 52 SY----------NRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKE-KP 90
Y N+ Y R +R E +P
Sbjct: 111 MYIEQRDRLYNDNQVFAK-------Y----NVSRLQPYLKLRQALLELRP 149
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.4 bits (70), Expect = 0.021
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C C F L +HIR K
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV 102
Score = 26.0 bits (56), Expect = 1.6
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSH 85
C C + F H+
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKK 123
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.2 bits (66), Expect = 0.030
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 65 CTYCSRAFKKRSDLTRHIRSH 85
C C R+F + L H + H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34
Score = 24.2 bits (53), Expect = 1.9
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
R T KPF+
Sbjct: 2 STRGSTGIKPFQ 13
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 29.2 bits (65), Expect = 0.057
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
+ C C + + + L + + + +K
Sbjct: 39 TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.2 bits (63), Expect = 0.078
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 59 PNPSLSCTYCSRAFKKRSDLTRHIRSHTKEK 89
P S +C++C R F+ L H+ H +++
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.0 bits (64), Expect = 0.11
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 60 NPSLSCTYCSRAFKKRSDLTRHI-RSHTKEKPFK 92
N S C C+ K+ L+ H + H E+ FK
Sbjct: 48 NSSYVCVECNFLTKRYDALSEHNLKYHPGEENFK 81
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 0.25
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C CS A +++L H+R HT EK
Sbjct: 12 CPQCSYASAIKANLNVHLRKHTGEK 36
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 0.27
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 68 CSRAFKKRSDLTRHIRSHTK 87
C +AF + DL RH +SH +
Sbjct: 11 CDKAFVRNHDLIRHKKSHQE 30
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.4 bits (58), Expect = 0.34
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEK 89
+C C + F + LT HI H +K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 27.6 bits (60), Expect = 0.65
Identities = 12/69 (17%), Positives = 22/69 (31%)
Query: 17 RLSSGVQRSMESSEKENRENGQNQIVSEPPTDRTVSYNRPVPPNPSLSCTYCSRAFKKRS 76
+ +Q+ E + + N Q + + R + V +L C C
Sbjct: 767 KAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLLCGKCKAYACSTD 826
Query: 77 DLTRHIRSH 85
D+ SH
Sbjct: 827 DIRIIKDSH 835
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 26.8 bits (58), Expect = 0.73
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 48 DRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKE 88
D + N P N + C +C + ++LT H+ H +E
Sbjct: 11 DFIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.1 bits (59), Expect = 0.84
Identities = 4/32 (12%), Positives = 6/32 (18%)
Query: 58 PPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEK 89
L + DL I +
Sbjct: 204 RGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 27.5 bits (60), Expect = 0.84
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 56 PVPPNPSLSCTYCSRAFKKRSDLTRHIRS 84
P+ S C C+ F S L+ H+RS
Sbjct: 110 PIVNPSSYVCNVCNARFSTMSALSEHLRS 138
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.3 bits (55), Expect = 0.96
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
+C C + F + L++HI H +
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGEER 32
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.7 bits (53), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 65 CTYCSRAFKKRSDLTRHIRSH 85
C C R+F ++S L+RH R H
Sbjct: 4 CGLCERSFVEKSALSRHQRVH 24
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.4 bits (53), Expect = 1.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 64 SCTYCSRAFKKRSDLTRHIR 83
+C C+RAF +R L RH +
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQ 23
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 24.3 bits (52), Expect = 2.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C AF +++ RH++ HT
Sbjct: 10 CRICLSAFTTKANCARHLKVHT 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.5 bits (52), Expect = 2.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSH 85
SC C FK++ ++ H+RSH
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSH 33
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.5 bits (52), Expect = 2.2
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 60 NPSLSCTYCSRAFKKRSDLTRHIRSHTKE 88
+ C C + F+ S L H H E
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALHAGE 38
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 25.2 bits (54), Expect = 2.6
Identities = 7/38 (18%), Positives = 9/38 (23%)
Query: 48 DRTVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSH 85
S PV C C+ + H R
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC 39
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 25.4 bits (56), Expect = 2.8
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 10/49 (20%)
Query: 36 NGQNQIVSEPPTDRTVSYNRPV--PPNP--------SLSCTYCSRAFKK 74
N + + ++ + + +PV + C C
Sbjct: 2 NNKTEQGNDAVSGQPSIKGQPVLGKDDAPVTVVEFGDYKCPSCKVFNSD 50
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.9 bits (51), Expect = 2.8
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 62 SLSCTYCSRAFKKRSDLTRHIRS 84
+ +C C + F + L++HI++
Sbjct: 2 AFACPACPKRFMRSDALSKHIKT 24
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 25.7 bits (56), Expect = 3.0
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
+ + F + R+ + T P
Sbjct: 39 DDFTLQYFGSKKQYERYRKKCTLRHP 64
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 25.1 bits (55), Expect = 3.8
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 50 TVSYNRPVPPNPSLSCTYCSRAFKKRSDLTRHIRSHTKEKPFKVR 94
+ + P+ + Y S ++ + + + E VR
Sbjct: 195 AMPFVAPLRILSNKGYIYAS----FKTHPLKDLMTPKIEALTSVR 235
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural
genomics, unknown function, PSI-2, protein structure
initiative; NMR {Bartonella henselae str}
Length = 87
Score = 24.6 bits (53), Expect = 4.1
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 65 CTYCSRAFKKRSDLT 79
C YCS ++ L+
Sbjct: 51 CPYCSTLYRYDPSLS 65
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural
genomics, PSI-2, protein structure initiative; NMR
{Silicibacter pomeroyi}
Length = 67
Score = 24.2 bits (52), Expect = 4.3
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 58 PPNPSLSCTYCSRAFKKRSDLTRHIRSH 85
+ C YC + + + H
Sbjct: 36 EDTGWVECPYCDCKYVLKGSKADALEHH 63
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 24.4 bits (52), Expect = 5.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 65 CTY---CSRAFKKRSDLTRHIR-SHTKEKP 90
C+ C R + + DL HI H +
Sbjct: 61 CSIVQGCKRTYLSQRDLQAHINHRHMRAGK 90
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.6 bits (50), Expect = 5.6
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 58 PPNPSLSCTYCSRAFKKRSDLTRHIRSHTK 87
C C + F LT+H R HT+
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 23.1 bits (49), Expect = 5.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 68 CSRAFKKRSDLTRHIRSHT 86
C R+F R L RH + HT
Sbjct: 10 CGRSFNDRRKLNRHKKIHT 28
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.3 bits (52), Expect = 6.3
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 23 QRSMESSEKENRENGQNQIVSEPPTD 48
+E ++ NR +P D
Sbjct: 128 SEQVEKNKINNRIA-DKAFYQQPDAD 152
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 24.3 bits (52), Expect = 6.5
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 44 EPPTDRTVSYNRPVPPNPSLS------CTYCSRAFKKRSDLTRHIRSHTKEKPFKVR 94
P + +P L C C+R F ++L H RS K K R
Sbjct: 26 RPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRS----KDHKKR 78
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Rhodobacter sphaeroides 2}
Length = 80
Score = 23.8 bits (51), Expect = 7.4
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 17/67 (25%)
Query: 28 SSEKENRENGQNQIVSEPPT----DRTVS-------------YNRPVPPNPSLSCTYCSR 70
+ + R+ + P T V+ + + C YC R
Sbjct: 2 RRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDR 61
Query: 71 AFKKRSD 77
+ S
Sbjct: 62 RYIHESF 68
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.9 bits (48), Expect = 7.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C + FK + L H HT +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.8 bits (48), Expect = 7.7
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 65 CTYCSRAFKKRSDLTRHIRSH 85
C C R FK D RH+ H
Sbjct: 12 CHICERKFKNELDRDRHMLVH 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.124 0.347
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,262,720
Number of extensions: 56582
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 344
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.1 bits)