RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9655
(96 letters)
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.9 bits (104), Expect = 2e-08
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPFK 92
C ++F + L H++ H+ + +
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYI 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 43.1 bits (102), Expect = 4e-08
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 65 CTYCSRAFKKRSDLTRHIRS-HTKEKPFK 92
C C + F + L HI+ HT E+P K
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERPHK 36
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 41.1 bits (97), Expect = 2e-07
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C+RAF ++ L RH RSHT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 38.5 bits (90), Expect = 3e-06
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C + F + L++HI++H +K
Sbjct: 5 CPECPKRFMRSDHLSKHIKTHQNKK 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 37.6 bits (88), Expect = 5e-06
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C +AF + S L +H R HT E
Sbjct: 10 CVECGKAFSRSSILVQHQRVHTGE 33
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 36.5 bits (85), Expect = 1e-05
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKEK 89
CT+ C + F + +L RH R+HT EK
Sbjct: 5 CTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 35.3 bits (82), Expect = 3e-05
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C R F + LT HIR+HT
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHT 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.6 bits (80), Expect = 9e-05
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C++C + F+++ L H + +
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 22.7 bits (49), Expect = 3.4
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 83 RSHTKEKPFK 92
R+HT EKP+
Sbjct: 1 RTHTGEKPYA 10
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 33.8 bits (78), Expect = 1e-04
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKE 88
CT+ C +++ + +L H+RSHT E
Sbjct: 5 CTFEGCRKSYSRLENLKTHLRSHTGE 30
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 33.8 bits (78), Expect = 2e-04
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 68 CSRAFKKRSDLTRHIRSHTKE 88
C +AF + DL RH +SH ++
Sbjct: 11 CDKAFVRNHDLIRHKKSHQEK 31
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 32.9 bits (75), Expect = 3e-04
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEK 89
C C KK S L +HIR+HT +
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.1 bits (75), Expect = 4e-04
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 55 RPVPPNPSLSCTYCSRAFKKRSDLTRHIRSH 85
C C + FK + L H++ H
Sbjct: 23 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 25.8 bits (56), Expect = 0.28
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 68 CSRAFKKRSDLTRHIRSHTKEKPFK 92
C ++F +S RH+ H +P+
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYG 32
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 32.7 bits (75), Expect = 5e-04
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHT 86
C C R F + +DLTRHIR HT
Sbjct: 5 CPVESCDRRFSRSADLTRHIRIHT 28
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 32.2 bits (74), Expect = 6e-04
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C +AF + S L H R HT
Sbjct: 5 CLECGKAFSQNSGLINHQRIHT 26
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.3 bits (74), Expect = 6e-04
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHT 86
C + C++ F + ++L HI +H
Sbjct: 5 CPFDGCNKKFAQSTNLKSHILTHA 28
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.3 bits (74), Expect = 7e-04
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 65 CTYCSRAFKKRSDLTRHI-RSHTKE 88
C C F + + HI + HT+
Sbjct: 11 CYICHARFTQSGTMKMHILQKHTEN 35
Score = 23.4 bits (51), Expect = 1.8
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 83 RSHTKEKPFK 92
R+H+ EKP++
Sbjct: 1 RTHSGEKPYE 10
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 31.7 bits (72), Expect = 0.001
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C ++F SDL++H R+HT E
Sbjct: 15 CDECGKSFSHSSDLSKHRRTHTGE 38
Score = 27.4 bits (61), Expect = 0.053
Identities = 2/13 (15%), Positives = 5/13 (38%)
Query: 80 RHIRSHTKEKPFK 92
R + + +K
Sbjct: 2 RSEWQQRERRRYK 14
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.2 bits (71), Expect = 0.001
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKE 88
CT+ C + F +L H+R HT +
Sbjct: 5 CTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 30.7 bits (69), Expect = 0.004
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEK 89
C++ FK+R ++ HI++H +++
Sbjct: 22 LFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.3 bits (55), Expect = 0.48
Identities = 3/19 (15%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 74 KRSDLTRHIRSHTKEKPFK 92
R + ++++ +K F+
Sbjct: 3 PRGSIDKYVK-EMPDKTFE 20
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 30.1 bits (68), Expect = 0.004
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C AF +++ RH++ HT
Sbjct: 10 CRICLSAFTTKANCARHLKVHTDT 33
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 29.6 bits (66), Expect = 0.007
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEKPF 91
+C C + F+ L RH SH+ EKP+
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 29.2 bits (65), Expect = 0.009
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTKEK 89
CTYC+ +FK + +LT+H++S K
Sbjct: 3 HCTYCNFSFKTKGNLTKHMKSKAHSK 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 29.3 bits (66), Expect = 0.011
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C R+F + L H + H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRHM 35
Score = 26.2 bits (58), Expect = 0.16
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 81 HIRSHTKEKPFK 92
R T KPF+
Sbjct: 2 STRGSTGIKPFQ 13
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 28.9 bits (65), Expect = 0.013
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 59 PNPSLSCTYCSRAFKKRSDLTRHIRSHTKEK 89
P S +C++C R F+ L H+ H +++
Sbjct: 2 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.8 bits (64), Expect = 0.016
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKE 88
C C +AF + S L RH HT E
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 28.1 bits (63), Expect = 0.025
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 68 CSR---AFKKRSDLTRHIRSHTKE 88
CSR FK + L H+R HT E
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHTGE 33
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.0 bits (59), Expect = 0.064
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C + F ++ L H+R HT
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCHT 25
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 27.0 bits (59), Expect = 0.078
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKE 88
+C+ C F++R +L H+ SHT E
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSHTGE 30
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (56), Expect = 0.23
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSHTK 87
+C C R F + + RH + H +
Sbjct: 5 ACDICGRKFARSDERKRHTKIHLR 28
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.4 bits (55), Expect = 0.33
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 64 SCTYCSRAFKKRSDLTRHIRSH 85
SC C FK++ ++ H+RSH
Sbjct: 5 SCPVCGLRFKRKDRMSYHVRSH 26
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 24.6 bits (53), Expect = 0.47
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 55 RPVPPNPSLSCTY--CSRAFKKRSDLTRHIRSHTKE 88
+P P C C + F LTRH +HT E
Sbjct: 1 KPFP------CKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 24.7 bits (53), Expect = 0.51
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 68 CSRAFKKRSDLTRHIRSHTK 87
C +AFKK + L H SHT+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQ 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (53), Expect = 0.62
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 65 CTYCSRAFKKRSDLTRHIR 83
C YCS K+ S+L++H++
Sbjct: 5 CNYCSFDTKQPSNLSKHMK 23
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 24.3 bits (52), Expect = 0.68
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 65 CTYCSRAFKKRSDLTRHIRSH 85
C C R+F ++S L+RH R H
Sbjct: 3 CGLCERSFVEKSALSRHQRVH 23
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (55), Expect = 0.74
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKPFKVR 94
C C+R F ++L H RS K K R
Sbjct: 18 CLACARYFIDSTNLKTHFRS----KDHKKR 43
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 25.9 bits (57), Expect = 0.75
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C +C + K R+ L +H++ P
Sbjct: 34 CEFCLKYMKSRTILQQHMKKCGWFHP 59
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 0.94
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHT 86
C C A + S LT H+RSHT
Sbjct: 6 CQICPYASRNSSQLTVHLRSHT 27
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 23.6 bits (51), Expect = 1.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 65 CTYCSRAFKKRSDLTRH 81
C C+RAF +R L RH
Sbjct: 4 CGLCNRAFTRRDLLIRH 20
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.5 bits (56), Expect = 1.1
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
+ + F + R+ + T P
Sbjct: 37 DDFTLQYFGSKKQYERYRKKCTLRHP 62
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.6 bits (53), Expect = 1.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 60 NPSLSCTYCSRAFKKRSDLTRHIRSHTKE 88
N + C +C + ++LT H+ H +E
Sbjct: 16 NSTYQCKHCDSKLQSTAELTSHLNIHNEE 44
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.2 bits (55), Expect = 1.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 65 CTYCSRAFKKRSDLTRHIRSHTKEKP 90
C YC + K H+ +P
Sbjct: 34 CEYCLKYMKYEKSYRFHLGQCQWRQP 59
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.7 bits (48), Expect = 2.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 63 LSCTYCSRAFKKRSDLTRHIRSHTKEK 89
+ C C + F + L H R HT EK
Sbjct: 1 VECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.8 bits (48), Expect = 3.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 62 SLSCTYCSRAFKKRSDLTRH 81
+ C+ C + F +R+ + RH
Sbjct: 4 AFVCSKCGKTFTRRNTMARH 23
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 22.2 bits (47), Expect = 4.6
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 65 CTY--CSRAFKKRSDLTRHIRSHTKE 88
C++ C A+ K L H+ HT E
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGE 31
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 23.2 bits (49), Expect = 6.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 69 SRAFKKRSDLTRHIRSHTKEKPF 91
K ++ L R R + + F
Sbjct: 12 RAPLKVQAALVRGFRRYLDRQDF 34
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 353
Score = 23.3 bits (49), Expect = 8.3
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 69 SRAFKKRSDLTRHIRSHTKEKPF 91
F+ ++ + R + K F
Sbjct: 41 QAIFRIQAGVCELFREYLATKKF 63
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 22.9 bits (48), Expect = 9.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 69 SRAFKKRSDLTRHIRSHTKEKPF 91
FK RS + + +R E F
Sbjct: 31 MAIFKIRSSVFKAVRDFFHENGF 53
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal
domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Length = 143
Score = 22.7 bits (48), Expect = 9.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 57 VPPNPSLSCTYCS 69
VPP P+++ TY
Sbjct: 3 VPPGPNITATYGD 15
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 22.8 bits (48), Expect = 9.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 69 SRAFKKRSDLTRHIRSHTKEKPF 91
++ K R+ +T +R + F
Sbjct: 29 AQRLKTRAKITSLVRRFMDDHGF 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.124 0.347
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,586
Number of extensions: 11419
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 64
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)