BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9658
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NJG9|SUZ12_DROME Polycomb protein Su(z)12 OS=Drosophila melanogaster GN=Su(z)12 PE=1
SV=1
Length = 900
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 3 RLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVM 62
RLYHHT TCLPV PKE+D DS+ + DP WL+ KT MIDEF+DVNEGEKELMKLWNLHVM
Sbjct: 527 RLYHHTETCLPVHPKELDIDSEGESDPLWLRQKTIQMIDEFSDVNEGEKELMKLWNLHVM 586
Query: 63 KYGW 66
++G+
Sbjct: 587 RHGF 590
>sp|Q0VA03|SUZ12_XENTR Polycomb protein suz12 OS=Xenopus tropicalis GN=suz12 PE=2 SV=1
Length = 700
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 3 RLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVM 62
RLY H+ TCLP+ P+EMD DS+D+KDP+WL+ KT I+EF+DVNEGEKE+MK+WNLHVM
Sbjct: 520 RLYFHSDTCLPLRPQEMDVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKMWNLHVM 579
Query: 63 KYGW 66
K+G+
Sbjct: 580 KHGF 583
>sp|Q80U70|SUZ12_MOUSE Polycomb protein Suz12 OS=Mus musculus GN=Suz12 PE=1 SV=2
Length = 741
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 3 RLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVM 62
RLY H+ TCLP+ P+EM+ DS+D+KDP+WL+ KT I+EF+DVNEGEKE+MKLWNLHVM
Sbjct: 565 RLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVM 624
Query: 63 KYGW 66
K+G+
Sbjct: 625 KHGF 628
>sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3
Length = 739
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 3 RLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVM 62
RLY H+ TCLP+ P+EM+ DS+D+KDP+WL+ KT I+EF+DVNEGEKE+MKLWNLHVM
Sbjct: 563 RLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVM 622
Query: 63 KYGW 66
K+G+
Sbjct: 623 KHGF 626
>sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio GN=suz12b PE=2 SV=1
Length = 682
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 3 RLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVM 62
RLY H+ +C+P+ P+EM+ DS+D++DP+WLQ KT I+EFTDVNEGEKE+MKLWNLHVM
Sbjct: 523 RLYFHSDSCMPLRPQEMEVDSEDERDPEWLQEKTTTQIEEFTDVNEGEKEVMKLWNLHVM 582
Query: 63 KYGW 66
K G+
Sbjct: 583 KNGF 586
>sp|Q6DC03|SZ12A_DANRE Polycomb protein suz12-A OS=Danio rerio GN=suz12a PE=2 SV=1
Length = 657
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 54/64 (84%)
Query: 3 RLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVM 62
RLY H+ +C P+ P+EM+ DS+D++DP WL+ KT M I+EFTDVNEGEKE+MKLWNL VM
Sbjct: 528 RLYFHSDSCTPLRPQEMEVDSEDERDPDWLREKTAMQIEEFTDVNEGEKEIMKLWNLLVM 587
Query: 63 KYGW 66
K+G+
Sbjct: 588 KHGF 591
>sp|Q8W5B1|VRN2_ARATH Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana
GN=VRN2 PE=1 SV=2
Length = 440
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 37 KMMIDEFTDVNEGEKELMKLWNLHVMK 63
+ M+D+F DVN+ EK+ M LWN V K
Sbjct: 303 RQMLDDFVDVNKDEKQFMHLWNSFVRK 329
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3
Length = 755
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 3 RLYHHTITCLPVLPKEM--DQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLH 60
R ++H+ T P+ +++ ++DS+++ D L ++ ++ V++ EK M LWN+
Sbjct: 606 RQFYHSQTMQPITFEQVMSNEDSENETDDYALDISERLRLERLVGVSKEEKRYMYLWNIF 665
Query: 61 VMK 63
V K
Sbjct: 666 VRK 668
>sp|Q8L6Y4|EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana
GN=EMF2 PE=1 SV=2
Length = 631
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 37 KMMIDEFTDVNEGEKELMKLWNLHVMK 63
+ M+D+F DV + EK++M +WN V K
Sbjct: 541 RRMLDDFVDVTKDEKQMMHMWNSFVRK 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,995,126
Number of Sequences: 539616
Number of extensions: 989246
Number of successful extensions: 2617
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2606
Number of HSP's gapped (non-prelim): 15
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)