Query psy9658
Match_columns 79
No_of_seqs 73 out of 75
Neff 4.6
Searched_HMMs 29240
Date Sat Aug 17 01:17:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hpw_C Protein CCDA; alpha+bet 65.3 2.6 8.9E-05 22.4 1.2 22 50-71 12-33 (36)
2 2fly_A Proadrenomedullin N-20 53.6 7.8 0.00027 19.5 1.7 13 52-64 8-20 (26)
3 1j03_A Putative steroid bindin 29.3 48 0.0016 20.5 3.0 23 41-63 70-92 (102)
4 2l95_A Crammer, LP06209P; cyst 25.6 21 0.00071 20.8 0.7 12 40-51 58-69 (80)
5 2ph7_A Uncharacterized protein 21.6 13 0.00046 27.3 -0.9 15 2-16 76-90 (246)
6 4gl3_A Putative glucoamylase; 18.8 1.2E+02 0.004 23.3 3.9 50 5-56 104-154 (424)
7 2lm1_A Lysine-specific demethy 18.4 62 0.0021 19.6 1.9 30 38-67 4-33 (107)
8 2adl_A CCDA; ribbon-helix-heli 18.3 5.1 0.00017 23.8 -3.1 21 51-71 49-69 (72)
9 3iv4_A Putative oxidoreductase 16.3 36 0.0012 21.6 0.4 10 4-13 29-38 (112)
10 3f75_P Toxopain-2, cathepsin L 15.8 48 0.0016 20.8 0.9 14 39-52 69-82 (106)
No 1
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=65.31 E-value=2.6 Score=22.41 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhccccccc
Q psy9658 50 EKELMKLWNLHVMKYGWGRHLS 71 (79)
Q Consensus 50 EKe~M~~WN~fv~r~~~~AD~~ 71 (79)
=++.|..+|.||-++|+-+|.+
T Consensus 12 N~~ai~~~N~~ve~~Gl~~d~~ 33 (36)
T 3hpw_C 12 NQEGMAEVARFIEMNGSFADEN 33 (36)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHc
Confidence 3678999999999999888754
No 2
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=53.62 E-value=7.8 Score=19.48 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhh
Q psy9658 52 ELMKLWNLHVMKY 64 (79)
Q Consensus 52 e~M~~WN~fv~r~ 64 (79)
+|-+.||++++..
T Consensus 8 efrKKwn~w~lsR 20 (26)
T 2fly_A 8 EFRKKWNKWALSR 20 (26)
T ss_pred HHHHHHHHHHHhc
Confidence 6889999999863
No 3
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=29.34 E-value=48 Score=20.54 Aligned_cols=23 Identities=13% Similarity=0.279 Sum_probs=20.1
Q ss_pred cccCCCChhHHHHHHHHHHHHhh
Q psy9658 41 DEFTDVNEGEKELMKLWNLHVMK 63 (79)
Q Consensus 41 ~dF~Dv~~~EKe~M~~WN~fv~r 63 (79)
++.+++++.|++-+..|-.|..+
T Consensus 70 ~dl~~L~~~e~~~l~~W~~~f~~ 92 (102)
T 1j03_A 70 PSLEGLTEKEINTLNDWETKFEA 92 (102)
T ss_dssp SSCSSCCHHHHHHHHHHHHHHHT
T ss_pred CcccCCCHHHHHHHHHHHHHHhc
Confidence 67789999999999999998753
No 4
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=25.60 E-value=21 Score=20.78 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.7
Q ss_pred hcccCCCChhHH
Q psy9658 40 IDEFTDVNEGEK 51 (79)
Q Consensus 40 l~dF~Dv~~~EK 51 (79)
|+.|+|+|.+|-
T Consensus 58 ~N~FaDlT~eEf 69 (80)
T 2l95_A 58 INHLADLTPEEF 69 (80)
T ss_dssp CCGGGTSSHHHH
T ss_pred CcccccCCHHHH
Confidence 789999999885
No 5
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=21.60 E-value=13 Score=27.30 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=12.5
Q ss_pred CccceecccCcccCC
Q psy9658 2 YRLYHHTITCLPVLP 16 (79)
Q Consensus 2 ~R~y~Hs~t~~pl~~ 16 (79)
.|.|||.+||.|.++
T Consensus 76 g~iFy~~h~~Ky~~~ 90 (246)
T 2ph7_A 76 DVLFYHPHVIKPEKE 90 (246)
T ss_dssp TEEEEECSSCCCCHH
T ss_pred CEEEEeccCCCCChH
Confidence 588999999998653
No 6
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=18.76 E-value=1.2e+02 Score=23.33 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=39.5
Q ss_pred ceecccCcccCCCCCCCCCC-CCCCHHHHHHHHHHHhcccCCCChhHHHHHHH
Q psy9658 5 YHHTITCLPVLPKEMDQDSD-DQKDPKWLQTKTKMMIDEFTDVNEGEKELMKL 56 (79)
Q Consensus 5 y~Hs~t~~pl~~~e~d~DSE-dE~D~~Wl~~k~r~~l~dF~Dv~~~EKe~M~~ 56 (79)
||+++|.+|+.+.+.| +. +-||..+|..--...=+-|.+-++.|+++..+
T Consensus 104 wyd~~Tg~~l~~~~~d--~~vStVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~ 154 (424)
T 4gl3_A 104 WMNGKTGKTIPFSRKD--DGADIVESAFMFEGLLAAHQYFTKDNPTENRIRGI 154 (424)
T ss_dssp EEETTTCCEECSBTTB--CSEEHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHH
T ss_pred ceeCCCCCCCCCcCCC--CcccHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Confidence 6789999999987743 11 34788899888877778899999999998764
No 7
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=18.43 E-value=62 Score=19.63 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=25.4
Q ss_pred HHhcccCCCChhHHHHHHHHHHHHhhhccc
Q psy9658 38 MMIDEFTDVNEGEKELMKLWNLHVMKYGWG 67 (79)
Q Consensus 38 ~~l~dF~Dv~~~EKe~M~~WN~fv~r~~~~ 67 (79)
+.|++....+++...||..-..|..+++..
T Consensus 4 Q~L~el~~~~~~~~~F~~~L~~F~~~~g~~ 33 (107)
T 2lm1_A 4 QRLNELEAKTRVKLNFLDQIAKFWELQGSS 33 (107)
T ss_dssp SSSCSSCCSSHHHHHHHHHHHHHHTTTCCC
T ss_pred eehhhccCCchHHHHHHHHHHHHHHHcCCC
Confidence 457888888888999999999999988753
No 8
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=18.33 E-value=5.1 Score=23.83 Aligned_cols=21 Identities=14% Similarity=-0.162 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhccccccc
Q psy9658 51 KELMKLWNLHVMKYGWGRHLS 71 (79)
Q Consensus 51 Ke~M~~WN~fv~r~~~~AD~~ 71 (79)
++.|..||.|+-++|..+|.+
T Consensus 49 ~~ai~~~n~~~e~~G~f~de~ 69 (72)
T 2adl_A 49 QEGMVEVARFIEMNGSFADEN 69 (72)
T ss_dssp CCCCCCCCCSCSCSCCCSSSC
T ss_pred HHHHHHHHHHHHHhCCChHhc
Confidence 456788999999999999876
No 9
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=16.34 E-value=36 Score=21.61 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=7.7
Q ss_pred cceecccCcc
Q psy9658 4 LYHHTITCLP 13 (79)
Q Consensus 4 ~y~Hs~t~~p 13 (79)
.||||.+|-|
T Consensus 29 i~khatwCgp 38 (112)
T 3iv4_A 29 VLKHSETCPI 38 (112)
T ss_dssp EEEECTTCHH
T ss_pred EEEECCcCHh
Confidence 4788888876
No 10
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=15.78 E-value=48 Score=20.76 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.4
Q ss_pred HhcccCCCChhHHH
Q psy9658 39 MIDEFTDVNEGEKE 52 (79)
Q Consensus 39 ~l~dF~Dv~~~EKe 52 (79)
-|+.|+|++.+|-.
T Consensus 69 glN~FaDLT~eEF~ 82 (106)
T 3f75_P 69 KMNHFGDLSRDEFR 82 (106)
T ss_dssp CCCTTTTCCHHHHH
T ss_pred CCcccccCCHHHHH
Confidence 46899999999854
Done!