Query psy9658
Match_columns 79
No_of_seqs 73 out of 75
Neff 4.6
Searched_HMMs 13730
Date Sat Aug 17 01:17:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9658.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9658hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qhda1 a.115.1.2 (A:1-148,A:3 37.3 9.3 0.00067 25.6 2.3 31 43-73 124-157 (213)
2 d1knya1 a.24.16.1 (A:126-253) 28.7 4.2 0.0003 25.8 -0.6 13 1-13 55-67 (128)
3 d2gc4d1 a.3.1.1 (D:1-147) Cyto 26.2 13 0.00096 22.4 1.5 22 4-25 3-24 (147)
4 d1t0ga_ d.120.1.2 (A:) Putativ 20.5 40 0.0029 19.9 2.9 23 41-63 77-99 (109)
5 d2bh1a2 c.55.1.11 (A:2-145) Cy 16.5 31 0.0022 20.4 1.7 35 44-78 107-141 (144)
6 d2gbsa1 b.122.1.8 (A:2-137) Hy 13.8 24 0.0017 21.8 0.6 9 4-13 49-57 (136)
7 d1xm7a_ d.159.1.8 (A:) Hypothe 12.8 41 0.003 20.6 1.6 25 41-65 21-45 (188)
8 d1m56d_ f.23.8.1 (D:) Bacteria 12.0 54 0.0039 16.6 1.6 10 44-53 7-16 (42)
9 d1cmca_ a.43.1.5 (A:) Met repr 11.1 42 0.0031 19.9 1.1 28 4-31 60-88 (104)
10 d1qled_ f.23.8.1 (D:) Bacteria 9.7 72 0.0053 16.2 1.6 10 44-53 8-17 (43)
No 1
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=37.31 E-value=9.3 Score=25.60 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=23.8
Q ss_pred cCCCChh-HHHHHHHHHHHHhhhc--ccccccCc
Q psy9658 43 FTDVNEG-EKELMKLWNLHVMKYG--WGRHLSSA 73 (79)
Q Consensus 43 F~Dv~~~-EKe~M~~WN~fv~r~~--~~AD~~vp 73 (79)
|-.+|-. .-+|++.||.--+||| +++|++-|
T Consensus 124 fk~Inf~NsSe~IeNWn~QnrrqRtSVL~Da~e~ 157 (213)
T d1qhda1 124 FKRINFDNSSEYIENWNLQNRRQRTSVLADASET 157 (213)
T ss_dssp GGGGCCCCCSHHHHHHHHHHTTCCCSCCCCSSCC
T ss_pred eeEeecCCchHHHhccchhcchhcceeeccCCch
Confidence 4444433 6689999999999999 88888755
No 2
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=28.72 E-value=4.2 Score=25.77 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=10.2
Q ss_pred CCccceecccCcc
Q psy9658 1 MYRLYHHTITCLP 13 (79)
Q Consensus 1 ~~R~y~Hs~t~~p 13 (79)
+||.||||....+
T Consensus 55 hNr~~ftT~A~vl 67 (128)
T d1knya1 55 HHRICYTTSASVL 67 (128)
T ss_dssp HHTCCCSSSSSHH
T ss_pred hhhhhhcccccCc
Confidence 5899999987543
No 3
>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]}
Probab=26.18 E-value=13 Score=22.36 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.1
Q ss_pred cceecccCcccCCCCCCCCCCC
Q psy9658 4 LYHHTITCLPVLPKEMDQDSDD 25 (79)
Q Consensus 4 ~y~Hs~t~~pl~~~e~d~DSEd 25 (79)
+|||+-+.-||..++.-.+.++
T Consensus 3 ~~~~~~~~~pl~~~~~~~~~~~ 24 (147)
T d2gc4d1 3 QFFNIIDGSPLNFDDAMEEGRD 24 (147)
T ss_dssp CCBCTTTCCBCCGGGSCSTTSS
T ss_pred eeeecCCCCcCCcccccccccc
Confidence 7999999999999987555554
No 4
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.46 E-value=40 Score=19.91 Aligned_cols=23 Identities=13% Similarity=0.279 Sum_probs=19.4
Q ss_pred cccCCCChhHHHHHHHHHHHHhh
Q psy9658 41 DEFTDVNEGEKELMKLWNLHVMK 63 (79)
Q Consensus 41 ~dF~Dv~~~EKe~M~~WN~fv~r 63 (79)
.+-++++++|+.-|..|-.|..+
T Consensus 77 ~d~~~L~~~e~~~L~~W~~~f~~ 99 (109)
T d1t0ga_ 77 PSLEGLTEKEINTLNDWETKFEA 99 (109)
T ss_dssp SCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CcccCCCHHHHHHHHHHHHHHhc
Confidence 34578999999999999998864
No 5
>d2bh1a2 c.55.1.11 (A:2-145) Cytoplasmic domain of general secretion pathway protein L, EpsL {Vibrio cholerae [TaxId: 666]}
Probab=16.46 E-value=31 Score=20.41 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHHhhhcccccccCcccccc
Q psy9658 44 TDVNEGEKELMKLWNLHVMKYGWGRHLSSASQSAL 78 (79)
Q Consensus 44 ~Dv~~~EKe~M~~WN~fv~r~~~~AD~~vp~~~~~ 78 (79)
.-|-.-+|+.|..|=..+...++..+.-+|.+.+|
T Consensus 107 v~vaav~k~~l~~~l~~l~~~Gl~~~~i~pd~laL 141 (144)
T d2bh1a2 107 ADVVGVDRLWLRACLDHLKACGFDVKRVLPDVLAI 141 (144)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCCEEEEEEGGGGS
T ss_pred EEEEEEcHHHHHHHHHHHHHCCCcceEEEEchhcC
Confidence 34556689999999999999999999999988876
No 6
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=13.78 E-value=24 Score=21.77 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=6.4
Q ss_pred cceecccCcc
Q psy9658 4 LYHHTITCLP 13 (79)
Q Consensus 4 ~y~Hs~t~~p 13 (79)
.||||. |.|
T Consensus 49 ~fYHS~-~~~ 57 (136)
T d2gbsa1 49 FYYHSN-EGK 57 (136)
T ss_dssp EEEETT-TTC
T ss_pred EEEecC-CCC
Confidence 589997 443
No 7
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}
Probab=12.83 E-value=41 Score=20.62 Aligned_cols=25 Identities=4% Similarity=-0.209 Sum_probs=21.6
Q ss_pred cccCCCChhHHHHHHHHHHHHhhhc
Q psy9658 41 DEFTDVNEGEKELMKLWNLHVMKYG 65 (79)
Q Consensus 41 ~dF~Dv~~~EKe~M~~WN~fv~r~~ 65 (79)
..|.++..-...++..||+.|.+.-
T Consensus 21 r~f~~~~~~~~~ii~~wn~~V~~~D 45 (188)
T d1xm7a_ 21 NPEVRFKGFEIVILTNLLKVLKPED 45 (188)
T ss_dssp STTTCCTTHHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCC
Confidence 5799999999999999999987653
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.01 E-value=54 Score=16.65 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=8.5
Q ss_pred CCCChhHHHH
Q psy9658 44 TDVNEGEKEL 53 (79)
Q Consensus 44 ~Dv~~~EKe~ 53 (79)
.|++..||.|
T Consensus 7 MDi~vQEKTF 16 (42)
T d1m56d_ 7 MDITQQEKTF 16 (42)
T ss_dssp SCCHHHHHHH
T ss_pred cchHHHHHHH
Confidence 5889999987
No 9
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=11.07 E-value=42 Score=19.93 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=19.8
Q ss_pred cceecccCcccCCCCC-CCCCCCCCCHHH
Q psy9658 4 LYHHTITCLPVLPKEM-DQDSDDQKDPKW 31 (79)
Q Consensus 4 ~y~Hs~t~~pl~~~e~-d~DSEdE~D~~W 31 (79)
.|.|.-|+|||.-++. --|--|++-.+.
T Consensus 60 AFLHAfTGQPLP~D~Dl~Kd~~~~iP~~~ 88 (104)
T d1cmca_ 60 AFLHAFTGQPLPDDADLRKERSDEIPEAA 88 (104)
T ss_dssp HHHHHHHCCCCCCGGGGBTTSCSCSCHHH
T ss_pred HHHHHhcCCCCCCchhhhhcCcccccHHH
Confidence 4889999999987764 455566664443
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=9.73 E-value=72 Score=16.20 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=8.5
Q ss_pred CCCChhHHHH
Q psy9658 44 TDVNEGEKEL 53 (79)
Q Consensus 44 ~Dv~~~EKe~ 53 (79)
.|++..||.|
T Consensus 8 MDi~vQEkTF 17 (43)
T d1qled_ 8 MDIRHQQATF 17 (43)
T ss_dssp SCCHHHHHHH
T ss_pred cchHHHHHHH
Confidence 5888999987
Done!