RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9658
         (79 letters)



>gnl|CDD|204299 pfam09733, VEFS-Box, VEFS-Box of polycomb protein.  The VEFS-Box
          (VRN2-EMF2-FIS2-Su(z)12) box is the C-terminal region
          of these proteins, characterized by an acidic cluster
          and a tryptophan/methionine-rich sequence, the
          acidic-W/M domain. Some of these sequences are
          associated with a zinc-finger domain about 100 residues
          towards the N-terminus. This protein is one of the
          polycomb cluster of proteins which control HOX gene
          transcription as it functions in
          heterochromatin-mediated repression.
          Length = 141

 Score = 94.4 bits (235), Expect = 1e-26
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 3  RLYHHTITCLPVLPKEM--DQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLH 60
          R + H+ TC P+ P+E+  D+DS+D+ D  WL  +T+ M+DEF DVNEGEK +MKLWN  
Sbjct: 20 RQFFHSHTCQPMHPEEVMSDRDSEDEVDDDWLDLETRQMLDEFVDVNEGEKRIMKLWNSF 79

Query: 61 VMKYG 65
          V K  
Sbjct: 80 VRKQR 84


>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
          Length = 672

 Score = 29.8 bits (67), Expect = 0.093
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 2   YRLYH-HTITC-------LPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKEL 53
           Y LY  H   C       L +LP  + Q +++ ++ +W      +++DE+ D N  + EL
Sbjct: 168 YGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRE-RWQNKIRYLLVDEYQDTNTSQYEL 226

Query: 54  MKL 56
           +KL
Sbjct: 227 VKL 229


>gnl|CDD|153425 cd07996, WGR_MMR_like, WGR domain of molybdate metabolism
          regulator and related proteins.  The WGR domain is
          found in the putative Escherichia coli molybdate
          metabolism regulator and related bacterial proteins, as
          well as in various other bacterial proteins of unknown
          function. It has been called WGR after the most
          conserved central motif of the domain. The domain
          appears to occur in single-domain proteins and in a
          variety of domain architectures, together with
          ATP-dependent DNA ligase domains, WD40 repeats,
          leucine-rich repeats, and other domains. It has been
          proposed to function as a nucleic acid binding domain.
          Length = 74

 Score = 25.6 bits (57), Expect = 1.4
 Identities = 7/23 (30%), Positives = 8/23 (34%)

Query: 34 TKTKMMIDEFTDVNEGEKELMKL 56
          TK +     F    E  K   KL
Sbjct: 40 TKGQSRTKTFDSEEEALKAAEKL 62


>gnl|CDD|130146 TIGR01074, rep, ATP-dependent DNA helicase Rep.  Designed to
           identify rep members of the uvrD/rep subfamily [DNA
           metabolism, DNA replication, recombination, and repair].
          Length = 664

 Score = 26.3 bits (58), Expect = 1.9
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 11  CLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKL 56
            LP L  +     +++   +W      +++DE+ D N  + EL+KL
Sbjct: 187 LLPTLLLQ----QNEEVRNRWQNKIRYLLVDEYQDTNTSQYELVKL 228


>gnl|CDD|133132 cd06601, GH31_lyase_GLase, GLases (alpha-1,4-glucan lyases) are
           glycosyl hydrolase family 31 (GH31) enzymes that degrade
           alpha-1,4-glucans and maltooligosaccharides via a
           nonhydrolytic pathway to yield 1,5-D-anhydrofructose
           from the nonreducing end. GLases cleave the bond between
           C1 and O1 of the nonreducing sugar residue of
           alpha-glucans to generate a monosaccharide product with
           a double bond between C1 and C2. This family corresponds
           to subgroup 2 in the Ernst et al classification of GH31
           enzymes.
          Length = 332

 Score = 25.9 bits (57), Expect = 2.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 38  MMIDEFTDVNEGEKELMKLWNLHV 61
           ++ D+  + N   K  ++LWNL+ 
Sbjct: 151 LVTDDSYENNVKRKPAIELWNLYS 174


>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B. 
          This model represents a paralogous family of Plasmodium
          yoelii genes preferentially located in the subtelomeric
          regions of the chromosomes. There are no obvious
          homologs to these genes in any other organism.
          Length = 255

 Score = 25.2 bits (55), Expect = 3.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 22 DSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNL---HVMKY 64
          D+D+Q D       T  + ++F D N+ +KE+  L N+   H+ K+
Sbjct: 50 DADNQFDLNEFYQSTLSLANQFNDCNDDDKEIAHLRNIIDSHIKKH 95


>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
          Length = 667

 Score = 24.1 bits (53), Expect = 9.3
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 21/60 (35%)

Query: 12  LPVLPKEMDQDSDDQ-----KDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYGW 66
           L +L K MD   +D          W +                E EL +LW+  V KY  
Sbjct: 129 LSLLDKPMDFTGNDTIELDRSKAPWPKD---------------EAELNELWDQRV-KYDA 172


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.131    0.412 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,780,676
Number of extensions: 265617
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 9
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)