RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9658
         (79 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 0.58
 Identities = 8/51 (15%), Positives = 19/51 (37%)

Query: 16   PKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYGW 66
            P  +      +K  +  +  + M+ +   D     +++ K  N H   Y +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719


>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
           13124, center for structural genomics of infectious DI
           csgid; 1.85A {Clostridium perfringens}
          Length = 351

 Score = 24.3 bits (53), Expect = 4.8
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 17  KEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWN 58
           KE+    ++ K+  +        + +F  VN    + +  WN
Sbjct: 306 KEVKLSEEETKNLTYGPVVDNAKVIDFKFVNSVMDQWVNNWN 347


>2j3x_A C2 toxin component I; ADP-ribosyltransferase; 1.75A {Clostridium
          botulinum} PDB: 2j3v_A 2j3z_A
          Length = 431

 Score = 24.2 bits (51), Expect = 6.8
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 39 MIDEFTDVNEGEKELMKLWNLHVMKYGWGRHLSSASQSALE 79
          +I E  D     +   K W     K  W   L++  + A+ 
Sbjct: 3  IIKEPIDFINKPESEAKEWGKEEEK-RWFTKLNNLEEVAVN 42


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 23.7 bits (50), Expect = 9.4
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 1   MYRLYHHTITCLPVLPKEMDQ---DSDDQKDPKWLQTKTKM-MIDEFTDVNEGEKELMKL 56
             RL       L    +EM Q   +   + + K+L +  K              ++  +L
Sbjct: 64  TLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 57  WN 58
           +N
Sbjct: 120 YN 121


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.131    0.412 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,198,058
Number of extensions: 51828
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 4
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)