RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9659
(204 letters)
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 192 bits (490), Expect = 1e-61
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNY 70
+ + + D T E+ + A + +D+LI N + ++ + K M VN+
Sbjct: 79 SAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNF 138
Query: 71 FGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
V +T A LP M+++ +G IV VSS+ GK+A P +AY+ASK AL F ++R E +
Sbjct: 139 LSYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSV 197
Query: 131 --HNIKVTLISPGYIHTRLSLNAITGSGH 157
N+ +TL G I T ++ A++G H
Sbjct: 198 SRVNVSITLCVLGLIDTETAMKAVSGIVH 226
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 150 bits (381), Expect = 4e-46
Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQ 73
L DL+D E + L +D+L++ G + R + D+ +++ +
Sbjct: 46 ALPADLAD----ELEAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLT- 100
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
+L ++ V + + +P +AYAA+K AL+A+ + R E+ +
Sbjct: 101 ---AAFVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGV 157
Query: 134 KVTLISPGYIHTRL 147
+ L+ + T L
Sbjct: 158 HLVLVRLPAVATGL 171
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 153 bits (388), Expect = 7e-46
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQ 73
L+LD+ D ++ E R+D+L+ N G+ G + + D V+ VN G
Sbjct: 61 TLQLDVRDSKSVAAARERV--TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGT 118
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
V + +A LP M RR SG ++ SV G + +P Y ASK AL+ C++L + +
Sbjct: 119 VRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGV 178
Query: 134 KVTLISPGYIHTRLSLNAI 152
++LI G +HT +
Sbjct: 179 HLSLIECGPVHTAFMEKVL 197
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 149 bits (378), Expect = 6e-45
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 2 KRLADIPTYAP---VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTN 58
+ L D+ P + LD++D ++ L+ + R+D+L+NN G + G T
Sbjct: 40 EALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETT 99
Query: 59 TDVDYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQ 118
+ ++ FG +T+ALLP M R SG +V +SS G+++ SAY+A+K AL+
Sbjct: 100 ERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALE 159
Query: 119 AFCDTLRAEVASHNIKVTLISPGYIHT 145
+ L EVA IKV ++ PG T
Sbjct: 160 QLSEGLADEVAPFGIKVLIVEPGAFRT 186
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 146 bits (371), Expect = 3e-44
Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ + DL+ ++ A+ +++++ G G + + +VM N
Sbjct: 52 IGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVS 111
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ + + + + + G + V S ++ + S Y ASK ++ F ++LRAE+
Sbjct: 112 TILVAQQTVRLI-GERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSP 170
Query: 133 IKVTLISPGYIHTRL 147
+++ + P I +
Sbjct: 171 LRLVNLYPSGIRSEF 185
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 145 bits (369), Expect = 7e-44
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+VL LD++D T + ++ + +DIL+N + G + + K+M +N
Sbjct: 62 IVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFR-KIMEINVIA 120
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
Q I K + M +++G+I V+S K Y ++K AL ++L E+A
Sbjct: 121 QYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLG 180
Query: 133 IKVTLISPGYIHTRLS 148
I+VT + PG+++T ++
Sbjct: 181 IRVTTLCPGWVNTDMA 196
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 145 bits (369), Expect = 1e-43
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 17 LDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQVAI 76
+D S+ + + + + IL+NN G+ Y D+ +T K VN
Sbjct: 87 VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWT 146
Query: 77 TKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS---HNI 133
TKA LP+M + GHIVTV+S G +++P AY +SK A F TL E+A+ +
Sbjct: 147 TKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGV 206
Query: 134 KVTLISPGYIHTRLSLNAITGSGHTY 159
K T + P +++T N T G T
Sbjct: 207 KTTCLCPNFVNTGFIKNPSTSLGPTL 232
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 138 bits (349), Expect = 5e-41
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ L D+ + + F + L+NN G+ + + +++++L N
Sbjct: 53 LPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLE-EWRLVLDTNLT 111
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + +P+++RR G IV V S+ GK +AY ASK L ++
Sbjct: 112 GAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREA 171
Query: 132 NIKVTLISPGYIHTRLSLNAITGSGHTYGEKRSIT 166
N++V + PG + T +G+T G+ +
Sbjct: 172 NVRVVNVLPGSVDTGF-------AGNTPGQAWKLK 199
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 140 bits (355), Expect = 6e-41
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQ 73
LELD+ +++ ++ + RID+LI+N G G + + ++ +N
Sbjct: 63 TLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLST 122
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAI-PHRSAYAASKHALQAFCDTLRAEVASHN 132
+ +A LP M R++ G ++ +SS P+ + Y A+K A+ A E++
Sbjct: 123 QRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWG 182
Query: 133 IKVTLISPGYIHTRLSLNAITG 154
I+ ++I PG + + A +G
Sbjct: 183 IETSIIVPGAFTSGTNHFAHSG 204
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 133 bits (338), Expect = 3e-39
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ D+SD + + + ID L+NN G+ G + + D+ + N
Sbjct: 61 DTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEE-DFDYTMNTNLK 119
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G +T+AL M R+ SGHI ++SV A H S Y SK + +T+R
Sbjct: 120 GTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKC 179
Query: 132 NIKVTLISPGYIHTRL 147
N+++T + PG ++T +
Sbjct: 180 NVRITDVQPGAVYTPM 195
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 132 bits (335), Expect = 9e-39
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYFG 72
+E D+ E ++ L +D L++ ++ I + + ++ L +N
Sbjct: 52 PIESDIVKEVLEEGGVD-KLKNLDHVDTLVHAAAVARDTTIEAGSVA-EWHAHLDLNVIV 109
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+++ LLP++ R SG ++ ++S G P + YAASKHAL+ D R E A++
Sbjct: 110 PAELSRQLLPAL-RAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNG 168
Query: 133 IKVTLISPGYIHT 145
I+V+ +SPG +T
Sbjct: 169 IRVSTVSPGPTNT 181
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 132 bits (334), Expect = 2e-38
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 3 RLADIPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVD 62
RL + + ++D++D T + + A I+ D ++NN G+ G I + + +
Sbjct: 52 RLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEAN-E 110
Query: 63 YKVML-VNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFC 121
++ M VN G + +A+L M R G I+ +SS+ GK P +AY +K A+ A
Sbjct: 111 WQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAIS 170
Query: 122 DTLRAEVASHNIKVTLISPGYIHT 145
+ +R EVA+ N++V I+P + T
Sbjct: 171 ENVREEVAASNVRVMTIAPSAVKT 194
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 128 bits (325), Expect = 2e-37
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
LD+S ++EE + L F +D+++ N G+ Y + + + ++ M+ VN
Sbjct: 55 FYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEE-EFHEMIEVNLL 113
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G KA L S+ R +VT S V + IP+ Y ++K A +A T + E +
Sbjct: 114 GVWRTLKAFLDSLKRTGGLALVTTSDVSAR-LIPYGGGYVSTKWAARALVRTFQIE--NP 170
Query: 132 NIKVTLISPGYIHTRLSLN 150
+++ + PG + T +
Sbjct: 171 DVRFFELRPGAVDTYFGGS 189
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 127 bits (322), Expect = 7e-37
Identities = 44/134 (32%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
VLELD++D ++ + + + +DIL+NN GI G + +T D+ M+ N
Sbjct: 59 HVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTT-DWTRMIDTNLL 117
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + +T+A LP ++R G +V +SS+ G++ + + + Y A+K + AF +TLR EV
Sbjct: 118 GLMYMTRAALPHLLR-SKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTER 176
Query: 132 NIKVTLISPGYIHT 145
++V +I PG T
Sbjct: 177 GVRVVVIEPGTTDT 190
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 128 bits (323), Expect = 7e-37
Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ LD++D ++ + A+ + RID+L+NN G+ + + D +++ M+ VN
Sbjct: 56 LAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVD-EWERMIDVNIK 114
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + A+LP M ++SG I+ + S+ +P + Y A+K A++A D LR E S
Sbjct: 115 GVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--ST 172
Query: 132 NIKVTLISPGYIHTRLSL 149
NI+VT ++PG + + L+
Sbjct: 173 NIRVTCVNPGVVESELAG 190
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 127 bits (322), Expect = 2e-36
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
V +LD++ ++ +E F IDIL+NN G + D + D + + N
Sbjct: 90 HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVT 149
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+ IT+A+LP + SG IV + S+ G+ A P S Y ASK A+ AF D+LR E+ +
Sbjct: 150 ALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINT 209
Query: 132 NIKVTLISPGYIHTRLSLN 150
I+V LI+PG + T SL
Sbjct: 210 KIRVILIAPGLVETEFSLV 228
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 124 bits (313), Expect = 1e-35
Identities = 22/136 (16%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYFG 72
DL+ +E + + S ++++ G Y G + + + + ++ N
Sbjct: 51 YRARDLAS---HQEVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPE-QIQTLIENNLSS 106
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ + + L+ + ++V + S + S Y A K A++ +++R E+
Sbjct: 107 AINVLRELVKRYKDQ-PVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKP 165
Query: 133 IKVTLISPGYIHTRLS 148
+K+ + PG + T
Sbjct: 166 MKIIAVYPGGMATEFW 181
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 123 bits (311), Expect = 3e-35
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ +LD+ + +EE + + + + IDIL+NN G++ + + D++ M+ N
Sbjct: 49 YIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNK 108
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G V +T+A+LP MV R GHI+ + S G + Y A+K ++ F LR ++
Sbjct: 109 GLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGT 168
Query: 132 NIKVTLISPGYIHT 145
++VT I PG +
Sbjct: 169 AVRVTDIEPGLVGG 182
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 123 bits (311), Expect = 6e-35
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ L LD+ D M ++ F+ + LINN G++ D + D+ M+ N
Sbjct: 72 LPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIK 131
Query: 72 GQVAITKALLPSMVRRQSG-HIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G + T+ LLP ++ +G IV + SV GK P Y +K ++ F LR ++
Sbjct: 132 GLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQG 191
Query: 131 HNIKVTLISPGYIHTRLSLN 150
++VT + PG + SL
Sbjct: 192 TGVRVTNLEPGLCESEFSLV 211
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 124 bits (313), Expect = 8e-35
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQV 74
++LD++ + + + F + IL NN G++ I ++ D ++ VN G V
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV 123
Query: 75 AITKALLPSMVRR------QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEV 128
+P MV R + GH+V +S+ +A Y +K A++ ++L +
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSL 183
Query: 129 ASHNIKVTLISPGYIHTRLSLNAITGSGHTYGEKR 163
+ I V+++ PG + + + + GE +
Sbjct: 184 LKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVK 218
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 121 bits (307), Expect = 2e-34
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
DLS + L+ R D+L+NN G+ + G + T ++ ++ VN
Sbjct: 81 ESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLK 140
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+ +A P+M+ + GHI+ +SS+ GK + +AY ASK L + E+ H
Sbjct: 141 APYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQH 200
Query: 132 NIKVTLISPGYIHTRL 147
++V+L++PG + T
Sbjct: 201 QVRVSLVAPGSVRTEF 216
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 121 bits (306), Expect = 3e-34
Identities = 37/128 (28%), Positives = 57/128 (44%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQVAIT 77
D++ ++ +E+ S F DIL+NN G IM + + V +
Sbjct: 65 DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124
Query: 78 KALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVTL 137
+ L+P M R G I+ +S+ + + Y +K AL F TL EV NI+V
Sbjct: 125 RGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNC 184
Query: 138 ISPGYIHT 145
I+PG I T
Sbjct: 185 INPGLILT 192
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 121 bits (306), Expect = 4e-34
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ DLS+ + S S +DI INN G++ ++S +T +K M VN
Sbjct: 86 IPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTS-GWKDMFNVNVL 144
Query: 72 GQVAITKALLPSMVRRQ--SGHIVTVSSVQGKIAIPH--RSAYAASKHALQAFCDTLRAE 127
T+ SM R GHI+ ++S+ G +P Y+A+K+A+ A + LR E
Sbjct: 145 ALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQE 204
Query: 128 VAS--HNIKVTLISPGYIHTRLSL 149
+ +I+ T ISPG + T+ +
Sbjct: 205 LREAQTHIRATCISPGVVETQFAF 228
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 120 bits (304), Expect = 6e-34
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
D+ D + E IL+NN G T TD + + + + +F
Sbjct: 62 FASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAET-TDEAWSEELQLKFF 120
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+ +A LP + R IV V+S+ PH A +A++ ++ ++ E A
Sbjct: 121 SVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPK 180
Query: 132 NIKVTLISPGYIHT 145
++V I G + +
Sbjct: 181 GVRVNGILIGLVES 194
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 118 bits (298), Expect = 3e-33
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 12 PVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNY 70
+ D+++ + +++ + A+ +ID L+ N G+ ++ + K+ +N+
Sbjct: 52 FFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINF 111
Query: 71 FGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
F V++ LP + ++ +G++V VSS + AY +SK AL F TL E
Sbjct: 112 FSIVSLVGIALPEL-KKTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--E 168
Query: 131 HNIKVTLISPGYIHT 145
+K ++PG + T
Sbjct: 169 RQVKAIAVAPGIVDT 183
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 119 bits (300), Expect = 4e-33
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 17 LDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQVAI 76
D+ M + A + +D++ +N GI G + N D V+ ++ +G +
Sbjct: 87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHA 146
Query: 77 TKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
+A LP ++ + GHI +S G + Y +K+ + +TL EV + I V
Sbjct: 147 VEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGV 206
Query: 136 TLISPGYIHTRLSLNAITGSGHTYGE 161
+++ P + T+L N+ G YG
Sbjct: 207 SVLCPMVVETKLVSNSERIRGADYGM 232
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 116 bits (292), Expect = 5e-32
Identities = 40/148 (27%), Positives = 67/148 (45%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ D++ + + + M F DIL+NN G+ + I + +++ VN
Sbjct: 79 LHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSS 138
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ +P M ++ G I+ ++S G +A P +SAY A+KH + T+ EVA
Sbjct: 139 SFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESG 198
Query: 133 IKVTLISPGYIHTRLSLNAITGSGHTYG 160
+ V I PGY+ T L I T G
Sbjct: 199 VTVNSICPGYVLTPLVEKQIPDQARTRG 226
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 115 bits (290), Expect = 5e-32
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+D++D + + + L+ R+D L+N GI G + D+ + VN
Sbjct: 49 ATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQL-SKEDWQQTFAVNVG 107
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + + + R++ G IVTV+S SAY ASK AL++ ++ E+A
Sbjct: 108 GAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGS 167
Query: 132 NIKVTLISPGYIHT 145
++ ++SPG T
Sbjct: 168 GVRCNVVSPGSTDT 181
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 115 bits (289), Expect = 7e-32
Identities = 43/148 (29%), Positives = 67/148 (45%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ DLS + ++ A+ RIDIL+NN GI + I T+ ++ +N
Sbjct: 58 LYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSA 117
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
T A LP M ++ G I+ ++S G +A ++SAY A+KH + F E A
Sbjct: 118 VFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQG 177
Query: 133 IKVTLISPGYIHTRLSLNAITGSGHTYG 160
I I PG++ T L I+ G
Sbjct: 178 ITANAICPGWVRTPLVEKQISALAEKNG 205
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 115 bits (290), Expect = 7e-32
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFS-RIDILINNGGISYRGDIMSTNTDVDY-KVMLVNY 70
DL T ++ M+T +F +++IL+NN G+ + T+ DY +M N+
Sbjct: 73 EGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDF-TEKDYNIIMGTNF 131
Query: 71 FGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
+++ P + Q+G+++ +SS+ G A+P S Y+ASK A+ +L E A
Sbjct: 132 EAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAK 191
Query: 131 HNIKVTLISPGYIHTRLS 148
NI+V ++PG I T L
Sbjct: 192 DNIRVNSVAPGVILTPLV 209
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 115 bits (290), Expect = 7e-32
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 2/154 (1%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVN 69
A + L DL + + + R+DI++NN G+ RG I T TD D+ + VN
Sbjct: 67 ADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITET-TDADWSLSLGVN 125
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
I +A +P M G IV V+S G P + Y +K AL + + + A
Sbjct: 126 VEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHA 185
Query: 130 SHNIKVTLISPGYIHTRLSLNAITGSGHTYGEKR 163
I++ + P ++T + G
Sbjct: 186 PQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAV 219
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 114 bits (287), Expect = 1e-31
Identities = 42/148 (28%), Positives = 65/148 (43%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
V DLSD +E A F +DIL+NN GI + + + K++ +N
Sbjct: 54 VHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSA 113
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
T+ LP M R G I+ ++SV G + ++AY A+KH + + E A+ N
Sbjct: 114 VFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSN 173
Query: 133 IKVTLISPGYIHTRLSLNAITGSGHTYG 160
+ I PG++ T L I G
Sbjct: 174 VTCNAICPGWVLTPLVQKQIDDRAANGG 201
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 113 bits (286), Expect = 3e-31
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 14 VLELDLSDFTTMEERMETALSIFS-RIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
DLS + +E M T + F +++IL+NN GI + T DY +M +N+
Sbjct: 62 ASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDY-TVEDYSLIMSINFE 120
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
++ P + + G++V +SSV G +A+P+ + Y A+K A+ L E A
Sbjct: 121 AAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKD 180
Query: 132 NIKVTLISPGYIHTRLS 148
NI+V + PG I T L
Sbjct: 181 NIRVNGVGPGVIATSLV 197
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 112 bits (282), Expect = 1e-30
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ +DL++ E A F +D+L+NN GIS+ ++ T + + VN
Sbjct: 73 HTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDT-DPQLFDATIAVNLR 131
Query: 72 GQVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
+ A+ +MV + G I+TV+S +P AY SK L L E+
Sbjct: 132 APALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGP 191
Query: 131 HNIKVTLISPGYIHTRL 147
H I+ + P + T +
Sbjct: 192 HGIRANSVCPTVVLTEM 208
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 112 bits (282), Expect = 1e-30
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIF-SRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNY 70
D S E+ M+T S+F ++DILINN G + T D+ + N
Sbjct: 66 TGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDY-TAEDFSFHISTNL 124
Query: 71 FGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
+++ P + G+I+ +SS+ G ++ S Y+A+K AL L E AS
Sbjct: 125 ESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWAS 184
Query: 131 HNIKVTLISPGYIHTRLS 148
I+ ++P I T L+
Sbjct: 185 DGIRANAVAPAVIATPLA 202
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 110 bits (277), Expect = 3e-30
Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
V LD + + + A + + +++ I N G + I+ T V KV + +
Sbjct: 59 VARSLDARNEDEVTAFLNAADA-HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWA 117
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ M+ G I + +A+A++K L+A ++ E+ N
Sbjct: 118 GFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKN 177
Query: 133 IKVT-LISPGYIHT 145
I V LI + T
Sbjct: 178 IHVAHLIIDSGVDT 191
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 110 bits (277), Expect = 5e-30
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
++DL D +E A R+D+L+NN I+ G ++ ++ +V+ VN
Sbjct: 54 FQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTV-RLPEWRRVLEVNLTAP 112
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
+ ++ M + G IV V+SVQG A +AY ASK L +L ++A I
Sbjct: 113 MHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRI 172
Query: 134 KVTLISPGYIHTRLSLNAITGSGHTYGEKRSITTL-----YGAPKD 174
+V ++PG I T L AI S +R L G P++
Sbjct: 173 RVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEE 218
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 109 bits (275), Expect = 1e-29
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ + D++D ++ + F R+D+L NN G M T + +V+ N
Sbjct: 77 LCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLT 136
Query: 72 GQVAITKALLPSMVRR--QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G T+ M + + G I+ S+ P+ + Y A+KHA+ + +
Sbjct: 137 GPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGR 196
Query: 130 SHNIKVTLISPGYIHT 145
H+I I G T
Sbjct: 197 VHDIACGQIDIGNADT 212
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 109 bits (274), Expect = 1e-29
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ +DL D E E AL +D+L+NN ++ + T + + VN
Sbjct: 57 VCVDLGD----WEATERALGSVGPVDLLVNNAAVALLQPFLEV-TKEAFDRSFEVNLRAV 111
Query: 74 VAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ +++ + ++ R G IV VSS + A+ + S Y ++K AL + E+ H
Sbjct: 112 IQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHK 171
Query: 133 IKVTLISPGYIHTRL 147
I+V ++P + T +
Sbjct: 172 IRVNAVNPTVVMTSM 186
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 109 bits (274), Expect = 1e-29
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 1/133 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
++ D+ + ++ E A DIL+ + G G M + + +
Sbjct: 61 DIVAGDIREPGDIDRLFEKARD-LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARS 119
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
V + + MV + G +V + SV + + + TL E+A H
Sbjct: 120 AVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHG 179
Query: 133 IKVTLISPGYIHT 145
+ V + P I T
Sbjct: 180 VTVNAVLPSLILT 192
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 108 bits (273), Expect = 2e-29
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFG 72
+ +DL D + E AL +D+L+NN + + T + + VN
Sbjct: 56 PVCVDLGD----WDATEKALGGIGPVDLLVNNAALVIMQPFLEV-TKEAFDRSFSVNLRS 110
Query: 73 QVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+++ + M+ R G IV VSS+ + P+ Y+++K A+ + E+ H
Sbjct: 111 VFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPH 170
Query: 132 NIKVTLISPGYIHT 145
I+V ++P + T
Sbjct: 171 KIRVNSVNPTVVLT 184
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 109 bits (275), Expect = 2e-29
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYFG 72
D++D ++ + S IDIL+NN GI R ++ T +V+ ++
Sbjct: 87 GYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFR-QVIDIDLNA 145
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
++KA++PSM+++ G I+ + S+ ++ SAYAA+K L+ + +E N
Sbjct: 146 PFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEAN 205
Query: 133 IKVTLISPGYIHT 145
I+ I PGYI T
Sbjct: 206 IQCNGIGPGYIAT 218
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 108 bits (272), Expect = 2e-29
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 13 VVLELDLS-DFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYF 71
D++ ++ ++ +DILIN GI + + ++ + + +N+
Sbjct: 58 TFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI------LDDH-QIE-RTIAINFT 109
Query: 72 GQVAITKALLPSMVRRQSGH---IVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEV 128
G V T A+L +R+ G I + SV G AI Y+ASK A+ +F ++L
Sbjct: 110 GLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLA 169
Query: 129 ASHNIKVTLISPGYIHTRL 147
+ I+PG T L
Sbjct: 170 PITGVTAYSINPGITRTPL 188
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 108 bits (272), Expect = 2e-29
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
D++ + + A+S ++DIL+NN G D + +N F
Sbjct: 63 FACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFR-RAYELNVFS 121
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+++ + P M + G I+T++S+ + + ++YA+SK A + ++ N
Sbjct: 122 FFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKN 181
Query: 133 IKVTLISPGYIHT 145
I+V I+PG I T
Sbjct: 182 IRVNGIAPGAILT 194
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 108 bits (272), Expect = 3e-29
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
D++ + +++ + F +ID L NN G + D+ +V+ +N G
Sbjct: 61 YVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGA 120
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
+ KA+ M+ + G IV +S+ G P+ +AY SK A+ A +T ++A +NI
Sbjct: 121 FHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNI 180
Query: 134 KVTLISPGYIHTRLSLNAITGSGHTYGEKRSITTLYGAPKDWISSKI 180
+V ISPGY+ + + +T + +
Sbjct: 181 RVNAISPGYMGPGF-MWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 226
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 108 bits (271), Expect = 3e-29
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 2 KRLADIPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDV 61
K+ ++ +A +L E +E S + ++D+L++N + +
Sbjct: 36 KQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVE 95
Query: 62 DY-KVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAF 120
DY + A+ A+ M +R+SGHI+ ++S S Y +++
Sbjct: 96 DYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTL 155
Query: 121 CDTLRAEVASHNIKVTLISPGYIHT 145
+ L E+ +NI V I P Y+H+
Sbjct: 156 ANALSKELGEYNIPVFAIGPNYLHS 180
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 108 bits (272), Expect = 3e-29
Identities = 37/146 (25%), Positives = 68/146 (46%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ +D+S E +E + + R+D+L+NN G G++++ + ++M VN G
Sbjct: 76 FGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKG 135
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+K ++P M R G I+ +S AI R+AY ASK A+ + + + A
Sbjct: 136 IFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEG 195
Query: 133 IKVTLISPGYIHTRLSLNAITGSGHT 158
I+V ++PG I + +
Sbjct: 196 IRVNAVAPGTIDSPYFTKIFAEAKDP 221
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 108 bits (272), Expect = 4e-29
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY----KVMLVNYFGQ 73
D++ ++ + + L F +ID+L+NN G + +T TD K + +N
Sbjct: 66 DVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAV 125
Query: 74 VAITKALLPSMVRRQSGHIVTVSS-VQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ +TK + P + G IV VSS V G A P YA +K AL + + ++A
Sbjct: 126 IEMTKKVKPHL-VASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFG 184
Query: 133 IKVTLISPGYIHT 145
I+V +SPG + T
Sbjct: 185 IRVNSVSPGMVET 197
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 107 bits (270), Expect = 5e-29
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGIS-YRGDIMSTNTDVDYKVMLVNYFGQVAI 76
+ E + A+++ +DIL++N ++ + G+I+ +V K++ VN V +
Sbjct: 71 HVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLM 130
Query: 77 TKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVT 136
TKA++P M +R G ++ VSSV P+ Y SK AL L E+A NI+V
Sbjct: 131 TKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVN 190
Query: 137 LISPGYIHTRLS 148
++PG I T S
Sbjct: 191 CLAPGLIKTNFS 202
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 107 bits (269), Expect = 6e-29
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+L+L ++ + + R+D +++N G+ MS + VM VN
Sbjct: 67 FILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVN 126
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+T+ALLP +++ +G +V SS G+ + AYAASK A + L E
Sbjct: 127 ATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ- 185
Query: 132 NIKVTLISPGYIHTRLSLNAITG 154
++V I+PG T + +A
Sbjct: 186 RLRVNCINPGGTRTAMRASAFPT 208
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 107 bits (269), Expect = 7e-29
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ + D++D + ++ + + R+D++INN + T + + F
Sbjct: 63 LSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVF 122
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + + + P++ G +V V+S+ + + AY +K AL A TL E+
Sbjct: 123 GALRLIQGFTPALEES-KGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEK 181
Query: 132 NIKVTLISPGYIHT 145
I+V + PGYI
Sbjct: 182 GIRVNSVLPGYIWG 195
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 106 bits (268), Expect = 7e-29
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGIS-YRGDIMSTNTDVDYKVMLVNYF 71
+ L L+ + E F R+D L++N I R + + +VM VN
Sbjct: 69 IALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVN 128
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEV-AS 130
+T+ALLP + R + I SS G+ + AY SK A + TL E+
Sbjct: 129 ATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGV 188
Query: 131 HNIKVTLISPGYIHTRL 147
++ I+PG T +
Sbjct: 189 TAVRANSINPGATRTGM 205
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 107 bits (269), Expect = 8e-29
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ LE +++D E ++ AL F +I +L+NN G +D + +N F
Sbjct: 64 IGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFE-WAFKLNLFS 122
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+++ P M + G I+ +SS+ G+ ++Y +SK A+ + +V
Sbjct: 123 LFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMG 182
Query: 133 IKVTLISPGYIHT 145
I+V I+PG I T
Sbjct: 183 IRVNAIAPGAIKT 195
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 106 bits (268), Expect = 9e-29
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ +D+++ +++ + + R+DIL+ GI TD + K + +N G
Sbjct: 67 VVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGM 126
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIA--IPHRSAYAASKHALQAFCDTLRAEVASH 131
+A+ M+ ++ G IV + S+ G I ++AY ASK + + +L AE A H
Sbjct: 127 FRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPH 186
Query: 132 NIKVTLISPGYIHTRLS 148
I+ ++P YI T L+
Sbjct: 187 GIRANAVAPTYIETTLT 203
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 106 bits (267), Expect = 1e-28
Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 17 LDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQVAI 76
LD++ +++++ + R+D+L N G + G ++ M +N +
Sbjct: 57 LDVTK----KKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLM 112
Query: 77 TKALLPSMVRRQSGHIVTVSSVQGKI-AIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
KA LP M+ ++SG+I+ +SSV + + +R Y+ +K A+ ++ A+ I+
Sbjct: 113 IKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRC 172
Query: 136 TLISPGYIHT 145
+ PG + T
Sbjct: 173 NCVCPGTVDT 182
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 106 bits (267), Expect = 1e-28
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQV 74
++ DL+ + ++ D + N GI +G I + + KV+ +N + +
Sbjct: 49 IKADLTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSI 106
Query: 75 AITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIK 134
K L ++ + IV S Q IA P+ AY SK A+ +L ++A + I+
Sbjct: 107 YFIKGLENNL--KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIR 164
Query: 135 VTLISPGYIHTRLSLNAITGSGHTYGEK 162
V + PG + T L N I + G
Sbjct: 165 VNTVCPGTVDTDLYRNLIQKYANNVGIS 192
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 106 bits (268), Expect = 1e-28
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGIS-YRGDIMSTNTDVDYKVMLVNYF 71
D+++ ++ + R+ +++ G S G I +++ + + +N
Sbjct: 66 RYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVN 125
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + + K MVR G V +SS+ AY +K A+ E+ +
Sbjct: 126 GTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGAS 185
Query: 132 NIKVTLISPGYIHTRL 147
++V I PG I T L
Sbjct: 186 WVRVNSIRPGLIRTDL 201
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 106 bits (267), Expect = 1e-28
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ ++ D++ + + +++A+ F ++D++INN G+ + D+ KV+ N
Sbjct: 60 IAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLS-DWNKVIDTNLT 118
Query: 72 GQVAITKALLPSMVR-RQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G ++ + V G ++ +SSV KI P YAASK ++ +TL E A
Sbjct: 119 GAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAP 178
Query: 131 HNIKVTLISPGYIHT 145
I+V I PG I+T
Sbjct: 179 KGIRVNNIGPGAINT 193
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 106 bits (267), Expect = 2e-28
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D+S++ +++ +E F ++D ++N GI+ R ++ +V+ VN F
Sbjct: 74 MAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEF-PLDEFRQVIEVNLF 132
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQG-KIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G + + + + I+ + S+ ++ +P+ SAYAASK + + L E
Sbjct: 133 GTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGR 192
Query: 131 HNIKVTLISPGYIHT 145
+ I+V +I+PG+ T
Sbjct: 193 YGIRVNVIAPGWYRT 207
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 106 bits (267), Expect = 2e-28
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY--KVMLVNYFG 72
+DL++ ++ ++ + F R+DI+ NN S D++ T VD VN G
Sbjct: 62 HVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARG 121
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ + K +P ++ G IV +SS A +AYA +K A++ + + H
Sbjct: 122 TMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHG 181
Query: 133 IKVTLISPGYIHT 145
++ I+PG + T
Sbjct: 182 VRCNAIAPGLVRT 194
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 106 bits (266), Expect = 2e-28
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
LD++ + + A F +D L+NN GIS + + + + + KV+ +N G
Sbjct: 56 QHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVE-RFRKVVEINLTGV 114
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
K ++P+M G IV +SS G + + S+Y ASK ++ E+ + I
Sbjct: 115 FIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRI 174
Query: 134 KVTLISPGYIHTRL 147
+V + PG +T +
Sbjct: 175 RVNSVHPGMTYTPM 188
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 105 bits (265), Expect = 3e-28
Identities = 33/133 (24%), Positives = 62/133 (46%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQV 74
+ LD++ + ++TA++ F + +L+NN GI G I +++ VN G
Sbjct: 58 VHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVF 117
Query: 75 AITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIK 134
+A++ M G I+ +SS++G Y A+K A++ + E+ I+
Sbjct: 118 LGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIR 177
Query: 135 VTLISPGYIHTRL 147
V I PG + T +
Sbjct: 178 VNSIHPGLVKTPM 190
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 105 bits (264), Expect = 3e-28
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
L D++D + A ID+L N G+S ++ Y + VN
Sbjct: 57 HALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQV-SEASYDRQFAVNTK 115
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + L P + R+ G IV SSV + P S Y+ASK AL +F L AE+
Sbjct: 116 GAFFTVQRLTPLI--REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPR 173
Query: 132 NIKVTLISPGYIHT 145
I+V +SPG+I T
Sbjct: 174 GIRVNSVSPGFIDT 187
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 106 bits (266), Expect = 4e-28
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 12 PVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY--KVMLVN 69
+ D+++ + ++ + T L+ F +IDIL+NN G + +T+ V+ K +N
Sbjct: 80 INAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLN 139
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVSS-VQGKIAIPHRSAYAASKHALQAFCDTLRAEV 128
+ + +T+ +++ G IV VSS V G A YA +K AL + ++
Sbjct: 140 FQAVIEMTQKTKEHLIK-TKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDL 198
Query: 129 ASHNIKVTLISPGYIHT 145
H ++V +SPG + T
Sbjct: 199 IQHGVRVNSVSPGAVAT 215
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 105 bits (264), Expect = 4e-28
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D+S T + + + F RID L+NN G+ + T DY + VN
Sbjct: 71 HTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEM-TQEDYDHNLGVNVA 129
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRS--AYAASKHALQAFCDTLRAEVA 129
G IT+ M+++ SGHIV++++ + + +K L A +L E +
Sbjct: 130 GFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFS 189
Query: 130 SHNIKVTLISPGYIHT 145
++V +SPG I T
Sbjct: 190 RSGVRVNAVSPGVIKT 205
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 105 bits (265), Expect = 4e-28
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+D+SD + ++ ++ F +D L+ N G+ + ++ T T D+ +V+ +N G
Sbjct: 80 CRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDT-TVEDFDRVIAINLRGA 138
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
TK P M+ R G IV +SS+ G++A+ AY SK + AE+ S I
Sbjct: 139 WLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGI 198
Query: 134 KVTLISPGYIHTRLSLNAITGSGHTYGEKR 163
+ + P ++ T + A+ G
Sbjct: 199 RSNTLLPAFVDTPMQQTAMAMFDGALGAGG 228
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 105 bits (264), Expect = 4e-28
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ + D+S ++ +E ALS F ++DIL+NN GI ++ ++ +++ VN
Sbjct: 58 LAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVR 117
Query: 72 GQVAITKALLPSMVRRQSGH----IVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAE 127
G +T L+P + I+ V+S P+ + Y A+K + + L E
Sbjct: 118 GVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIE 177
Query: 128 VASHNIKVTLISPGYIHTRL 147
+A I+V ++P T L
Sbjct: 178 LAPAKIRVVALNPVAGETPL 197
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 105 bits (264), Expect = 5e-28
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D+SD +E + F RID NN GI + + + T ++ KV+ +N
Sbjct: 67 LTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLR 126
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + +L M + SG +V +SV G I ++S YAA+KH + E +
Sbjct: 127 GVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRY 186
Query: 132 NIKVTLISPGYIHTRLSLNAITGSGHTYGEK 162
I++ I+PG I T + N++ K
Sbjct: 187 GIRINAIAPGAIWTPMVENSMKQLDPENPRK 217
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 105 bits (264), Expect = 5e-28
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+V++ ++ ++E + F R+D+ +NN +M + + M +N
Sbjct: 57 LVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMEL-EETHWDWTMNINAK 115
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+ + M + GHIV++SS+ + + + SK AL+A L E++
Sbjct: 116 ALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPK 175
Query: 132 NIKVTLISPGYIHT 145
I V +S G I T
Sbjct: 176 QIIVNAVSGGAIDT 189
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 104 bits (263), Expect = 6e-28
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ ++ D+S +EE + +SRID+L NN GI ++ +D + +V+ VN +
Sbjct: 59 LGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLY 118
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
++A++P M+++ G IV +S+ G + Y +KH L ++ A
Sbjct: 119 SAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQ 178
Query: 132 NIKVTLISPGYIHT 145
I+ + PG + T
Sbjct: 179 GIRAVAVLPGTVKT 192
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 104 bits (263), Expect = 6e-28
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQV 74
+E D+++ ++ ++ + I +L+NN GI G I S + +++ VN FG
Sbjct: 51 IECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYY 110
Query: 75 AITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIK 134
+K +P M+R + IV +SSVQ I + SAY SKHA+ ++ + A ++
Sbjct: 111 YASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPL-LR 169
Query: 135 VTLISPGYIHT 145
+ P I T
Sbjct: 170 CNAVCPATIDT 180
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 104 bits (261), Expect = 1e-27
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ ++ D+S +E + +S F R DIL+NN GI T + K +N
Sbjct: 57 LTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDEL-TFEQWKKTFEINVD 115
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+ KA +P M R G I+ ++S + I + Y ++K A F L +++
Sbjct: 116 SGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKD 175
Query: 132 NIKVTLISPGYIHT 145
I V I+P + T
Sbjct: 176 GITVNAIAPSLVRT 189
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 104 bits (261), Expect = 1e-27
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D++ ++ + + R+D+L+NN G+ + ++ TD ++ +V+ V
Sbjct: 76 EAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDM-TDEEWDRVLNVTLT 134
Query: 72 GQVAITKALLPSMVRRQ-SGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
+ T+A L G IV +SV G A +S YAA+K + A E
Sbjct: 135 SVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVE 194
Query: 131 HNIKVTLISPGYIHT 145
+++ +SP
Sbjct: 195 FGVRINAVSPSIARH 209
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 103 bits (259), Expect = 2e-27
Identities = 17/123 (13%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
Query: 27 ERM-ETALSIFSRIDILINNGGISYRGDI--MSTNTDVDY-KVMLVNYFGQVAITKALLP 82
ER+ + L ID +++N I + + ++ D ++ + + ++ +
Sbjct: 60 ERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIA 119
Query: 83 SMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVTLISPGY 142
+ ++ ++S GK + + Y ++ A A ++ ++ I + I P +
Sbjct: 120 PLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNF 179
Query: 143 IHT 145
+
Sbjct: 180 FNN 182
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 104 bits (261), Expect = 2e-27
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D+ D + + F+R+D+L+NN G + + T + ++ N
Sbjct: 86 RAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLT 145
Query: 72 GQVAITKALLPSMVRR--QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G T+ M + + G I+ S+ + P+ + Y A+KHA+ + +
Sbjct: 146 GAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGR 205
Query: 130 SHNIKVTLISPGYIHT 145
H+I I G T
Sbjct: 206 MHDIACGQIDIGNAAT 221
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 103 bits (260), Expect = 2e-27
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFG 72
+ DL+D E L+ R+D+L+NN GI R + + +V+ VN
Sbjct: 83 AVVADLADLEGAANVAE-ELAATRRVDVLVNNAGIIARAPAEEV-SLGRWREVLTVNLDA 140
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
++++ +M+ SG IVT++S+ + +AYAASKHA+ L +E A
Sbjct: 141 AWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRG 200
Query: 133 IKVTLISPGYIHT 145
+ V ++PGY+ T
Sbjct: 201 VGVNALAPGYVVT 213
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 103 bits (260), Expect = 2e-27
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQVAIT 77
DL E+ + + + ++DILINN GI + + +K+ VN V +T
Sbjct: 69 DLGT----EQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLT 124
Query: 78 KALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVTL 137
++ L M+ R+ G ++ ++S + + Y+A+K + +L N+ V
Sbjct: 125 RSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNT 184
Query: 138 ISPGYIHT 145
I PG T
Sbjct: 185 IMPGSTLT 192
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 103 bits (259), Expect = 2e-27
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 2/133 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
V L D S T + ++ + S + +++N + ++ V+
Sbjct: 74 VALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFT-RMFSVHMLA 132
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
I P + + IV +S + AY A+K L++ + A A
Sbjct: 133 PYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAPL- 191
Query: 133 IKVTLISPGYIHT 145
+KV I+P +
Sbjct: 192 VKVNGIAPALLMF 204
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 103 bits (259), Expect = 2e-27
Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+++D++ +++ + + +DIL+NN + I+ T Y K+ +N
Sbjct: 57 YAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEI-TRESYEKLFAINVA 115
Query: 72 GQVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G + +A M+ + + G I+ ++S G+ + Y A+K A+ + + ++
Sbjct: 116 GTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIK 175
Query: 131 HNIKVTLISPGYIHT 145
H I V I+PG +
Sbjct: 176 HRINVNAIAPGVVDG 190
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 103 bits (258), Expect = 3e-27
Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 19/202 (9%)
Query: 5 ADIPTYAPVVLELDLSDFTTMEERMETALSIFS----RIDILINNGGI---SYRGDIMST 57
A P V+ DL ++ + + + +LINN +G +
Sbjct: 55 AQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVN 114
Query: 58 NTDVDYKVMLVNYFGQVAITKALLPSMVRR--QSGHIVTVSSVQGKIAIPHRSAYAASKH 115
+ +N + +T L + S +V +SS+ Y A K
Sbjct: 115 DLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKA 174
Query: 116 ALQAFCDTLRAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGEKRSITTLY-----G 170
A L AE +++V +PG + + + + + L
Sbjct: 175 ARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQ-QLARETSKDPELRSKLQKLKSDGALV 231
Query: 171 APKDWISSKIKIFLVHSHETVT 192
+ K+ + L+ +
Sbjct: 232 DC-GTSAQKL-LGLLQKDTFQS 251
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 102 bits (256), Expect = 4e-27
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
V L DL + ++ AL + +L++ ++ R + + ++ +V+ ++
Sbjct: 46 VPLPTDLEK-DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALEL-SYEEWRRVLYLHLD 103
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIA--IPHRSAYAASKHALQAFCDTLRAEVA 129
+ +A P M G ++ + SV A AY +K AL L E A
Sbjct: 104 VAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWA 163
Query: 130 SHNIKVTLISPGYIHTRL 147
I+V L+ PGY+ T
Sbjct: 164 RLGIRVNLLCPGYVETEF 181
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 102 bits (257), Expect = 4e-27
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 14 VLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFG 72
+ D++D +E + +DILINN GI YR ++ ++ KV+ N
Sbjct: 62 GVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVEL-ELENWQKVIDTNLTS 120
Query: 73 QVAITKALLPSMVRRQS-GHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
++++ M+ R S G I+ + S+ + A P + Y A+K ++ ++ AE A
Sbjct: 121 AFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQF 180
Query: 132 NIKVTLISPGYIHT 145
NI+ I PGYI T
Sbjct: 181 NIQTNAIGPGYILT 194
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 102 bits (256), Expect = 4e-27
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 3/130 (2%)
Query: 16 ELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQVA 75
+ D + +DIL+ N G G + + + + +
Sbjct: 62 RYVVCDLRKDLDL---LFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 118
Query: 76 ITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
I + LP+M + G IV ++S I + +++ AL F TL EVA + I V
Sbjct: 119 IVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITV 178
Query: 136 TLISPGYIHT 145
++PG+ T
Sbjct: 179 NCVAPGWTET 188
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 102 bits (256), Expect = 5e-27
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDY--KVMLVN 69
+ + D++D + + + F ID+L+NN GI+ + T V+ KVM VN
Sbjct: 55 LRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVN 114
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G +A+LP M+ + +G IV ++SV +A P RSAY SK A+ ++ + A
Sbjct: 115 VRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYA 174
Query: 130 SHNIKVTLISPGYIHTRL 147
I+ + PG I T +
Sbjct: 175 GSGIRCNAVCPGMIETPM 192
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 102 bits (257), Expect = 6e-27
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ ++D+ D +E + A IDI I N GIS + + ++ N
Sbjct: 74 ISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEV-ESAQWDEVIGTNLT 132
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G A+ P M++R G IVTVSS+ G A +++Y +SK + ++ +
Sbjct: 133 GTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGY 192
Query: 132 NIKVTLISPGYIHT 145
I V ++PG I T
Sbjct: 193 GITVNAVAPGNIET 206
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 101 bits (255), Expect = 6e-27
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 5/138 (3%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVN 69
A + S ++ +E S ++D + G G+ S ++ +N
Sbjct: 60 ADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMN 119
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
+ A + Q G V + AY A+K A L +E
Sbjct: 120 LYSAFASAHIGAKLL--NQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENG 177
Query: 130 --SHNIKVTLISPGYIHT 145
I P + T
Sbjct: 178 GLPAGSTSLGILPVTLDT 195
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 102 bits (256), Expect = 6e-27
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYF 71
V + LD++D + ++ A D+L+NN GI+ ++ T D+ ++ VN F
Sbjct: 56 VFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLK-QIYSVNVF 114
Query: 72 GQVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
+A G I+ +S+ P SAY+ +K A++ E+A
Sbjct: 115 SVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAP 174
Query: 131 HNIKVTLISPGYIHT 145
V +PG + T
Sbjct: 175 KGHTVNAYAPGIVGT 189
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 102 bits (257), Expect = 7e-27
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
V +D DF + + ++ ++ R+DI++ N G++ T D+ VM +N
Sbjct: 76 VAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDI-TPEDFRDVMDINVT 134
Query: 72 GQVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G A P ++ + G I+ +SS G P Y ASKHA+ AE+
Sbjct: 135 GTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGK 194
Query: 131 HNIKVTLISPGYIHT 145
H+I+V + PG ++T
Sbjct: 195 HSIRVNSVHPGPVNT 209
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 102 bits (256), Expect = 8e-27
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDV---DY-KVMLVNYFGQ 73
D++ +E + T L F ++DIL+NN G + T T Y + +N
Sbjct: 66 DVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSV 125
Query: 74 VAITKALLPSMVRRQSGHIVTVSSV-QGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+A+TK +P + G IV +SS+ G A P Y+ +K A+ + ++ H
Sbjct: 126 IALTKKAVPHL-SSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHG 184
Query: 133 IKVTLISPGYIHT 145
I+V ISPG + T
Sbjct: 185 IRVNSISPGLVAT 197
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 101 bits (254), Expect = 1e-26
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ D++ ++ + + F R+D ++NN G + + +++ +N G
Sbjct: 59 ILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGT 118
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
+TK LP + R+ G+++ +SS+ G I Y A+K A+ A L + + + +
Sbjct: 119 YTLTKLALPYL-RKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGV 177
Query: 134 KVTLISPGYIHTRL 147
+V ISPG I T L
Sbjct: 178 RVNCISPGNIWTPL 191
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 101 bits (253), Expect = 1e-26
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D++D M A + + + IL+N+ GI+ D + T D + +VM VN
Sbjct: 61 ARIVADVTDAEAMTAAAAEAEA-VAPVSILVNSAGIARLHDALET-DDATWRQVMAVNVD 118
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHR--SAYAASKHALQAFCDTLRAEVA 129
G ++A +MV R +G IV + S+ G I + S+Y ASK A+ L AE A
Sbjct: 119 GMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWA 178
Query: 130 SHNIKVTLISPGYIHTRL 147
++V ++PGY+ T +
Sbjct: 179 GRGVRVNALAPGYVATEM 196
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 101 bits (254), Expect = 2e-26
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ LE D+SD M + + F +DI++ N GI+ + ++ + + VN
Sbjct: 80 IALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLR 139
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQG--KIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G +P + +R G IV VSS+ G P +AY A+K A A L E+
Sbjct: 140 GTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELG 199
Query: 130 SHNIKVTLISPGYIHT 145
H+I+V + PG I T
Sbjct: 200 KHHIRVNAVCPGAIET 215
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 101 bits (253), Expect = 2e-26
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 17 LDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY--KVMLVNYFGQV 74
D++ + ++T ++ ++DI+ N G+ + +VM +N +G
Sbjct: 71 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 130
Query: 75 AITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRS-AYAASKHALQAFCDTLRAEVASHNI 133
+ K M+ + G IV +S+ A S Y A+KHA+ +L E+ + I
Sbjct: 131 LVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGI 190
Query: 134 KVTLISPGYIHTRLSLNAITGSG 156
+V +SP + + L +
Sbjct: 191 RVNCVSPYIVASPLLTDVFGVDS 213
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 101 bits (253), Expect = 2e-26
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQV 74
++D+++ ++E +E + RIDIL+NN GI + T T++ +++ VN G
Sbjct: 58 FKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSY 117
Query: 75 AITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIK 134
+ K +P M+ G I+ ++SVQ A + +AY SKHAL ++ + A I+
Sbjct: 118 LMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-KIR 176
Query: 135 VTLISPGYIHTRL 147
+ PG I T +
Sbjct: 177 CNAVCPGTIMTPM 189
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 100 bits (252), Expect = 2e-26
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+E+D++ +++ M+ A+ D+L N G+S + TD ++ VN
Sbjct: 61 FAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDI-TDEEWDFNFDVNAR 119
Query: 72 GQVAITKALLPSMV-RRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G + + G IV +S+ K+ P + Y+ASK A+ + L E+A
Sbjct: 120 GVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAP 179
Query: 131 HNIKVTLISPGYIHT 145
NI+V + PG++ T
Sbjct: 180 KNIRVNCVCPGFVKT 194
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 101 bits (254), Expect = 2e-26
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ ++D+ DF M+ ++ ++ R+DI++ N ++ G ++ + ++ VN
Sbjct: 92 IASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLN 151
Query: 72 GQVAITKALLPSMVRRQ-SGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G + +P ++ + G IV SS+ G + Y ASKH L T+ E+
Sbjct: 152 GAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGP 211
Query: 131 HNIKVTLISPGYIHT 145
NI+V ++ P + T
Sbjct: 212 RNIRVNIVCPSSVAT 226
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 100 bits (252), Expect = 3e-26
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
V ++ D ++ ++ E + RID+L N G + T+ Y N
Sbjct: 78 VGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEV-TEEQYDDTFDRNVK 136
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + + LP + + +V S G P S YAASK AL++F ++
Sbjct: 137 GVLFTVQKALPLL--ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDR 194
Query: 132 NIKVTLISPGYIHT 145
I++ +SPG T
Sbjct: 195 GIRINTLSPGPTET 208
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 100 bits (252), Expect = 3e-26
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ LD+ D + E + + F R+D+++ N G+ G + + V+ VN G
Sbjct: 80 LTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTG 139
Query: 73 QVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+A +P+M+ G IV VSS G A P Y+ASKH L A +TL E+ +
Sbjct: 140 TWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEY 199
Query: 132 NIKVTLISPGYIHT 145
I+V I P + T
Sbjct: 200 GIRVNSIHPYSVET 213
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 100 bits (252), Expect = 4e-26
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
V E+D+ D+ ++ +++ + R+DI++ N GI GD + ++ D+ +++ +N
Sbjct: 79 VTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLA 138
Query: 72 GQVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G KA +P M+ + G I+ SSV G A PH Y A+KH + E+
Sbjct: 139 GVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQ 198
Query: 131 HNIKVTLISPGYIHTRLSLNAIT 153
H I+V + P ++ T + N T
Sbjct: 199 HMIRVNSVHPTHVKTPMLHNEGT 221
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 99 bits (250), Expect = 4e-26
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
V +++D+SD + +E A D+++NN G++ I S T KV +N
Sbjct: 54 VAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESI-TPEIVDKVYNINVK 112
Query: 72 GQVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G + +A + + + G I+ S G + P + Y++SK A++ T ++A
Sbjct: 113 GVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAP 172
Query: 131 HNIKVTLISPGYIHT 145
I V PG + T
Sbjct: 173 LGITVNGYCPGIVKT 187
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 100 bits (250), Expect = 6e-26
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 4/141 (2%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYFGQVAI 76
D+ D + + + F IDI +NN G I + +M + G A+
Sbjct: 73 DIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLK-RFDLMNGIQVRGTYAV 131
Query: 77 TKALLPSMVRRQSGHIVTVSSVQG-KIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
+++ +P M R + HI+T+S + + Y +K+ + + E+ I
Sbjct: 132 SQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIAS 191
Query: 136 TLISPG-YIHTRLSLNAITGS 155
+ P + T N + G
Sbjct: 192 NTLWPRTTVATAAVQNLLGGD 212
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 99.5 bits (249), Expect = 6e-26
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY--RGDIMSTNTDVDY-KVMLVN 69
+ + +D+SD + + + L+ F ID L+NN I + D + T Y K M VN
Sbjct: 61 ISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVN 120
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G + T+A+ M +R G IV SS + + Y +K + L E+
Sbjct: 121 LDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYSNY---YGLAKVGINGLTQQLSRELG 177
Query: 130 SHNIKVTLISPGYIHT 145
NI++ I+PG I T
Sbjct: 178 GRNIRINAIAPGPIDT 193
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 99 bits (250), Expect = 6e-26
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGI--SYRGDIMSTNTDVDY-KVMLVN 69
+ L DL+D ++ + ++ ++ F RID L+NN GI R D + ++ ++ VN
Sbjct: 82 IFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDL-KPENFDTIVGVN 140
Query: 70 YFGQVAITKALLPSMVR---RQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRA 126
G V T+A+L +M+ R S I+ ++SV + P R Y SK L AF L
Sbjct: 141 LRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLAL 200
Query: 127 EVASHNIKVTLISPGYIHT 145
+A I V + PG I +
Sbjct: 201 RLAETGIAVFEVRPGIIRS 219
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 99.2 bits (248), Expect = 1e-25
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ D+S+ + + ++ + I LI N G+S + D+ V VN FG
Sbjct: 69 YQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHE-DFAFVYDVNVFGV 127
Query: 74 VAITKALLPSMVRRQ-SGHIVTVSSVQGKIAI-------PHRSAYAASKHALQAFCDTLR 125
+A+ +++Q G IV SS+ +I + Y +SK A L
Sbjct: 128 FNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLA 187
Query: 126 AEVASHNIKVTLISPGYIHTRLS 148
AE AS I+V +SPGY++T +
Sbjct: 188 AEWASAGIRVNALSPGYVNTDQT 210
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 99.2 bits (248), Expect = 1e-25
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ + D++ + ++ IDI + N GI ++ ++ ++ N
Sbjct: 84 LPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDM-PLEEFQRIQDTNVT 142
Query: 72 GQVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIP--HRSAYAASKHALQAFCDTLRAEV 128
G +A +MV + G I+T +S+ G I S Y SK A+ + E+
Sbjct: 143 GVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVEL 202
Query: 129 ASHNIKVTLISPGYIHTRLS 148
A H I+V +SPGYI T L
Sbjct: 203 APHQIRVNSVSPGYIRTELV 222
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 98.4 bits (246), Expect = 2e-25
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 13 VVLELDLSDFTTMEERMETALSIFS------RIDILINNGGISYRGDIMSTNTDVDY-KV 65
+ +L +E + + + DILINN GI I T T+ + ++
Sbjct: 60 FSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEET-TEQFFDRM 118
Query: 66 MLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLR 125
+ VN I + L + R + I+ +SS +I++P AY+ +K A+ TL
Sbjct: 119 VSVNAKAPFFIIQQALSRL--RDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLA 176
Query: 126 AEVASHNIKVTLISPGYIHTRLSLNAITGS 155
++ + I V I PG++ T ++ ++
Sbjct: 177 KQLGARGITVNAILPGFVKTDMNAELLSDP 206
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 98.8 bits (247), Expect = 2e-25
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYFGQ 73
L+ D+ + + + + F IDIL+NN + + T + +M VN G
Sbjct: 67 LKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMK-RFDLMQQVNARGS 125
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIA--IPHRSAYAASKHALQAFCDTLRAEVASH 131
+A LP +++ + HI+T++ + Y +K + L AE
Sbjct: 126 FVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQ 185
Query: 132 NIKVTLISPG-YIHT 145
+ + + P I T
Sbjct: 186 GVAINALWPRTVIAT 200
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 98.0 bits (245), Expect = 2e-25
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQVAI 76
DLS+ + + + A F ++DI IN G + I+ T ++ ++ + +N
Sbjct: 71 DLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVET-SEAEFDAMDTINNKVAYFF 129
Query: 77 TKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVT 136
K M +GHI+T+++ S YA +K ++ + E+ I V
Sbjct: 130 IKQAAKHM--NPNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVN 187
Query: 137 LISPGYIHT 145
I+PG + T
Sbjct: 188 AIAPGPMDT 196
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 99.3 bits (248), Expect = 3e-25
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ + D+ D +++ ++ AL+ F IDIL++N GIS +G+++S ++ N G
Sbjct: 110 IARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIG 169
Query: 73 QVAITKALLPSMVRR-QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+A+LPSM+ R Q G ++ VSS G P +S YAASKH +Q +L EV H
Sbjct: 170 AWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGRH 229
Query: 132 NIKVTLISPGYIHT 145
NI+V ++PG ++T
Sbjct: 230 NIRVNSVNPGAVNT 243
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 98.0 bits (245), Expect = 3e-25
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
DL+ ++ ++ ++ F ID+LINN G + D Y VM N
Sbjct: 60 AFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIR 119
Query: 72 GQVAITKALLPSMVRR-----QSGHIVTVSSVQGKIA-IPHRSAYAASKHALQAFCDTLR 125
V TK LP + Q+ +++ S+ G P Y A+K L
Sbjct: 120 SVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWV 179
Query: 126 AEVASHNIKVTLISPGYIHT 145
++ ++SPG + T
Sbjct: 180 DFHTKDGVRFNIVSPGTVDT 199
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 99.5 bits (248), Expect = 3e-25
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
+ +D+ D + +E A+ F IDIL+NN + + T T +M+ VN
Sbjct: 104 LPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTK-RLDLMMNVNTR 162
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIA--IPHRSAYAASKHALQAFCDTLRAEVA 129
G +KA +P + + + HI+ +S AY +K+ + + + E
Sbjct: 163 GTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFK 222
Query: 130 SHNIKVTLISPGYIHTRLSLNAITGSG 156
I V + P +++ + G G
Sbjct: 223 -GEIAVNALWPKTAIHTAAMDMLGGPG 248
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 98.1 bits (245), Expect = 3e-25
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDI--MSTNTDVDYKVMLVNYFG 72
L +D+ + ++ AL F RIDILIN ++ +S N VM ++ G
Sbjct: 82 LSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFN-AFK-TVMDIDTSG 139
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+++ L R G IV +++ G + ++K A+ A L E N
Sbjct: 140 TFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQN 199
Query: 133 IKVTLISPGYIHT 145
I+V ++PG I
Sbjct: 200 IRVNSLAPGPISG 212
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 96.9 bits (242), Expect = 7e-25
Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
++ D++D + + + F R+DIL+NN G+ N + ++ K + +N
Sbjct: 63 IQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV---------NNEKNWEKTLQINLVSV 113
Query: 74 VAITKALLPSMVRRQSGH---IVTVSSVQGKIAIPHRSAYAASKHALQAF--CDTLRAEV 128
++ T L M ++ G I+ +SS+ G + + + Y ASKH + F L A +
Sbjct: 114 ISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANL 173
Query: 129 ASHNIKVTLISPGYIHTRL 147
+ +++ I PG+++T +
Sbjct: 174 MNSGVRLNAICPGFVNTAI 192
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 96.9 bits (242), Expect = 8e-25
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY--KVMLVNYFG 72
+ ++SD ++EE + F ID+ + N G+++ + D K++ V+ G
Sbjct: 88 YKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNG 147
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIA-IPHR-SAYAASKHALQAFCDTLRAEVAS 130
+ + + G ++ SS+ GKI IP + Y +K A +L E A
Sbjct: 148 VYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAP 207
Query: 131 HNIKVTLISPGYIHTRLS 148
+V ISPGYI T ++
Sbjct: 208 F-ARVNTISPGYIDTDIT 224
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 96.9 bits (242), Expect = 8e-25
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ + D+SD + TA F +D+L+NN GI I T D + +V+ VN
Sbjct: 80 LTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAET-GDAVFDRVIAVNLK 138
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + + R G I+ +S+ Q + P YAA+K ++A L E+
Sbjct: 139 GTFNTLREAAQRL--RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGR 196
Query: 132 NIKVTLISPGYIHTRLSLNAIT 153
+I V ++PG T L L +
Sbjct: 197 DITVNAVAPGPTATDLFLEGKS 218
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 96.5 bits (241), Expect = 1e-24
Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 2/146 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
L D+ D E +E A+ F +D NN G +S+ + + + + N
Sbjct: 60 AALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLT 119
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKI-AIPHRSAYAASKHALQAFCDTLRAEVAS 130
K +P++ G + SS G + YAASK L L E+ +
Sbjct: 120 SAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGA 179
Query: 131 HNIKVTLISPGYIHTRLSLNAITGSG 156
I+V + PG T + + G+
Sbjct: 180 RGIRVNALLPGGTDTPANFANLPGAA 205
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 96.1 bits (240), Expect = 2e-24
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ DLS + + +R+DIL+NN G S+ + S + KVM +N
Sbjct: 80 QAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESY-PVSGWEKVMQLNVT 138
Query: 72 GQVAITKALLPSMVR----RQSGHIVTVSSVQGKIAIPHRS-AYAASKHALQAFCDTLRA 126
+ + LLP + R ++ + SV G A+ ++ AY SK AL L
Sbjct: 139 SVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAK 198
Query: 127 EVASHNIKVTLISPGYIHTRL 147
E+ +I V +I+PG +R+
Sbjct: 199 ELVGEHINVNVIAPGRFPSRM 219
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 95.8 bits (239), Expect = 3e-24
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
D++ + + A+ F I IL+N+ G + G+ + + V+ N G
Sbjct: 76 DGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTG 135
Query: 73 QVAITKALLPS--MVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
+T+ +L + M G IV ++S GK + + + Y ASKH + F ++ E+A
Sbjct: 136 VFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAK 195
Query: 131 HNIKVTLISPGYIHT 145
I V + PGY+ T
Sbjct: 196 TGITVNAVCPGYVET 210
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 95.3 bits (238), Expect = 3e-24
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQVAI 76
D+ + + + A++ F +DI ++N G+ G + T+ ++ +V +N GQ +
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDV-TEEEFDRVFSLNTRGQFFV 134
Query: 77 TKALLPSMVRRQSGHIVTVSS-VQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
+ + + G IV SS ++P S Y+ SK A+ +F + I V
Sbjct: 135 AREAYRHL--TEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITV 192
Query: 136 TLISPGYIHT 145
++PG T
Sbjct: 193 NAVAPGGTVT 202
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 94.1 bits (235), Expect = 6e-24
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
D++D T+++ +E A+ RID+L+NN +G + S + ++ V
Sbjct: 50 FYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKA 109
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+++ + + G I+ ++S + + P AYA++K + A L + +
Sbjct: 110 PYELSRLCRDEL-IKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-D 167
Query: 133 IKVTLISPGYIHT 145
+ V I+PG+I+
Sbjct: 168 VLVNCIAPGWINV 180
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 94.5 bits (236), Expect = 6e-24
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQVAI 76
D D +E+ + + +DIL+N+ GI + + T T D+ +VM VN+
Sbjct: 89 DNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEET-TVADFDEVMAVNFRAPFVA 147
Query: 77 TKALLPSMVRRQSGHIVTVSS-VQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
++ + G I+T+ S + + P S Y+ASK AL L ++ I V
Sbjct: 148 IRSASRHL--GDGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGITV 205
Query: 136 TLISPGYIHT 145
++ PG T
Sbjct: 206 NIVHPGSTDT 215
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 94.6 bits (236), Expect = 7e-24
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
V ++ D+S + + + A+S F +D +++N G+ D + T + KV +N
Sbjct: 74 VAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEV-TQELFDKVFNLNTR 132
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKI-AIPHRSAYAASKHALQAFCDTLRAEVAS 130
GQ + + L R+ G I+ SS+ + IP+ + YA SK A++ FC + +
Sbjct: 133 GQFFVAQQGLKHC--RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGA 190
Query: 131 HNIKVTLISPGYIHT 145
+ V I+PG + T
Sbjct: 191 KGVTVNCIAPGGVKT 205
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 93.7 bits (234), Expect = 7e-24
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVN----Y 70
+ D SD + + F + L+NN GI+ + T T K++ VN +
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVF 118
Query: 71 FGQVAITKALLPSMVRRQSGH-IVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
FG T+ + M + G I+ +SS++G + P AY ASK A++ + + A
Sbjct: 119 FG----TRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCA 174
Query: 130 S--HNIKVTLISPGYIHT 145
++++V + PGYI T
Sbjct: 175 LKDYDVRVNTVHPGYIKT 192
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 93.5 bits (233), Expect = 8e-24
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 5/136 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVML-VNYF 71
V + ++ + S++D + G G S + + +M+ + +
Sbjct: 47 VDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVW 106
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS- 130
K + + G + + P Y +K A+ +L A+ +
Sbjct: 107 SSAIAAKLATTHL--KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGL 164
Query: 131 -HNIKVTLISPGYIHT 145
N V I P + T
Sbjct: 165 PDNSAVLTIMPVTLDT 180
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 94.2 bits (235), Expect = 1e-23
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVD-YKVMLVNYF 71
D+ +E + + + +D+L+NN G G + D V+ N
Sbjct: 74 DGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP-GGGATAELADELWLDVVETNLT 132
Query: 72 GQVAITKALLPS--MVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G +TK +L + M+ R +G IV ++S GK + H + Y+ASKH + F L E+A
Sbjct: 133 GVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELA 192
Query: 130 SHNIKVTLISPGYIHT 145
I V + PG++ T
Sbjct: 193 RTGITVNAVCPGFVET 208
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 94.6 bits (236), Expect = 1e-23
Identities = 22/134 (16%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDI--MSTNTDVDYKVMLVNYFG 72
++ D+ D ++ + + + +I+INN ++ +S N + + G
Sbjct: 81 IQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPN-AWK-TITDIVLNG 138
Query: 73 QVAITKALLPSMVRRQ-SGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+T + +++ Q ++++++ + A++K ++A +L AE +
Sbjct: 139 TAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKY 198
Query: 132 NIKVTLISPGYIHT 145
++ +I PG I T
Sbjct: 199 GMRFNVIQPGPIKT 212
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 93.8 bits (234), Expect = 1e-23
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ ++ D+SD + A+ F ID++ N G+ + ++T T + VN
Sbjct: 63 IGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGV-FPDAPLATMTPEQLNGIFAVNVN 121
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIA-IPHRSAYAASKHALQAFCDTLRAEVAS 130
G +A L +++ SG +V SS+ G I P S Y A+K A F T E+A
Sbjct: 122 GTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAP 181
Query: 131 HNIKVTLISPGYIHT 145
H I V I PG I T
Sbjct: 182 HKITVNAIMPGNIMT 196
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 93.3 bits (233), Expect = 1e-23
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ D+S M +++L+NN GI GD+ + + D+ +++ +N
Sbjct: 57 VRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLE-DFSRLLKINTESV 115
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN- 132
+ + +M + G I+ ++SV + I + Y+ASK A+ A
Sbjct: 116 FIGCQQGIAAM-KETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGY 174
Query: 133 -IKVTLISPGYIHTRL 147
I+V I P I+T +
Sbjct: 175 AIRVNSIHPDGIYTPM 190
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 91.9 bits (229), Expect = 2e-23
Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ +D+++ ++++ E ++D +++ G + + T + GQ
Sbjct: 39 VTVDITNIDSIKKMYEQ----VGKVDAIVSATGSATFSPLTEL-TPEKNAVTISSKLGGQ 93
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
+ + + S+ G + + + I ++ A + A+ AF + E+ I
Sbjct: 94 INLVLLGIDSL--NDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMP-RGI 150
Query: 134 KVTLISPGYIHTRLS 148
++ +SP +
Sbjct: 151 RINTVSPNVLEESWD 165
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 93.5 bits (233), Expect = 2e-23
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQVAI 76
++ + E A+ IF ++DI+ +N G+ G + T ++ +V +N GQ +
Sbjct: 87 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDV-TPEEFDRVFTINTRGQFFV 145
Query: 77 TKALLPSMVRRQSGHIVTVSSVQGKI-AIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
+ + G ++ + S+ G+ A+P + Y+ SK A++ F + ++A I V
Sbjct: 146 AREAYKHL--EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITV 203
Query: 136 TLISPGYIHT 145
+++PG I T
Sbjct: 204 NVVAPGGIKT 213
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 93.1 bits (232), Expect = 3e-23
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 20/153 (13%)
Query: 13 VVLELDLSDFTTM----EERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY----- 63
VV + DL++ + EE + + F R D+L+NN Y ++ + + +
Sbjct: 77 VVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTV 136
Query: 64 -----KVMLVNYFGQVAITKALLPSM------VRRQSGHIVTVSSVQGKIAIPHRSAYAA 112
+++ N +T + + IV + S Y
Sbjct: 137 ETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNM 196
Query: 113 SKHALQAFCDTLRAEVASHNIKVTLISPGYIHT 145
KHAL + E+A + I+V ++PG
Sbjct: 197 GKHALVGLTQSAALELAPYGIRVNGVAPGVSLL 229
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 92.7 bits (231), Expect = 3e-23
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-----KVML 67
V + D+ + E L+ F +ID LI N GI ++ + +
Sbjct: 54 VGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFH 113
Query: 68 VNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAE 127
VN G + KA LP++ G +V S G Y A+KHA+ + E
Sbjct: 114 VNVKGYIHAVKACLPAL-VSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFE 172
Query: 128 VASHNIKVTLISPGYIHTRL 147
+A H ++V ++PG ++T L
Sbjct: 173 LAPH-VRVNGVAPGGMNTDL 191
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 92.3 bits (230), Expect = 5e-23
Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 13 VVLELDLSD----FTTMEERMETALSIFSRIDILINNGGISYRGDIMSTN---------- 58
V+ + DLS E+ ++ + F R D+L+NN Y ++ +
Sbjct: 65 VLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKP 124
Query: 59 TDVDY-KVMLVNYFGQVAITKALLPSM-----VRRQSGHIVTVSSVQGKIAIPHRSAYAA 112
D ++ N + + +A R ++ +V + + +P Y
Sbjct: 125 IDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTM 184
Query: 113 SKHALQAFCDTLRAEVASHNIKVTLISPGYIHT 145
+KHAL E+A +I+V ++PG
Sbjct: 185 AKHALGGLTRAAALELAPRHIRVNAVAPGLSLL 217
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 92.7 bits (231), Expect = 5e-23
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDI--MSTNTDVDYKVMLVNY 70
+ ++ ++ + + +++ L F +I+ L+NNGG + +S+ V+ N
Sbjct: 75 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSK-GWH-AVLETNL 132
Query: 71 FGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G + KA+ S ++ G IV + K P A++ + +L E A
Sbjct: 133 TGTFYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGAARAGVYNLTKSLALEWAC 191
Query: 131 HNIKVTLISPGYIHT 145
I++ ++PG I++
Sbjct: 192 SGIRINCVAPGVIYS 206
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 91.8 bits (229), Expect = 5e-23
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ + + + E+ ++ ++ F +ID I N G + I+ + + + V+ V+ G
Sbjct: 78 YKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVE-AWNHVVQVDLNGT 136
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIA--IPHRSAYAASKHALQAFCDTLRAEVASH 131
KA+ R +G +V +S+ G IA +++Y +K +L E
Sbjct: 137 FHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF 196
Query: 132 NIKVTLISPGYIHTRLS 148
+V ISPGYI T LS
Sbjct: 197 -ARVNSISPGYIDTGLS 212
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 90.5 bits (225), Expect = 1e-22
Identities = 15/138 (10%), Positives = 41/138 (29%), Gaps = 5/138 (3%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVN 69
V + ++ L ++D ++ G G+ S + + + +
Sbjct: 49 VIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQS 108
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
+ + + ++ G + + P Y +K A+ C +L + +
Sbjct: 109 IWTSTISSHLATKHL--KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNS 166
Query: 130 S--HNIKVTLISPGYIHT 145
+ P + T
Sbjct: 167 GMPSGAAAIAVLPVTLDT 184
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 91.4 bits (228), Expect = 1e-22
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY-RGDIMSTNTDVDYKVMLVNYF 71
V+L DLSD ++ ++ + ++IL+NN Y + + + K +N F
Sbjct: 100 VLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIF 159
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+TKA L + +Q I+ +S+ Y+A+K A+ AF +L +
Sbjct: 160 SYFHVTKAALSHL--KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQK 217
Query: 132 NIKVTLISPGYIHTRL 147
I+V ++PG I T L
Sbjct: 218 GIRVNGVAPGPIWTPL 233
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 91.5 bits (228), Expect = 1e-22
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYF 71
+ + LD+SD + + T + F +D++ N GI + + T + +V+ VN
Sbjct: 94 IGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLS-EVLDVNVK 152
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIA-IPHRSAYAASKHALQAFCDTLRAEVAS 130
G V +A L + G ++ SS+ G + P S Y ASK A F T E+A
Sbjct: 153 GTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAP 212
Query: 131 HNIKVTLISPGYIHT 145
+ V I PG I T
Sbjct: 213 RGVTVNAILPGNILT 227
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 90.3 bits (225), Expect = 2e-22
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ + D+SD +E AL F R+ + + G+++ + + KV+ VN
Sbjct: 55 IAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNL-PLEAWEKVLRVNLT 113
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + + + G +V SV G + + YAA K + TL E+A
Sbjct: 114 GSFLVARKAGEVLEE--GGSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLALELARK 170
Query: 132 NIKVTLISPGYIHT 145
++V ++ PG I T
Sbjct: 171 GVRVNVLLPGLIQT 184
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 89.9 bits (224), Expect = 3e-22
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D+SD +++ ++ IDIL+NN I + K++ VN
Sbjct: 55 RAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDV-DLDHWRKIIDVNLT 113
Query: 72 GQVAITKALLPSMVRRQ-SGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVAS 130
G +T+A M +G +++++S P+ +AY A+K + F L E+
Sbjct: 114 GTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGK 173
Query: 131 HNIKVTLISPGYIHT 145
+NI ++PG I +
Sbjct: 174 YNITANAVTPGLIES 188
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 90.4 bits (225), Expect = 3e-22
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
E+D+ D + + A++ F ++D+++ N GI G + V++ G
Sbjct: 74 YTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHL-PVQAFA-DAFDVDFVG 131
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAI-----------PHRSAYAASKHALQAFC 121
+ A LP + I+T SV G IA P + Y+ +K + ++
Sbjct: 132 VINTVHAALPYLTSG--ASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYT 189
Query: 122 DTLRAEVASHNIKVTLISPGYIHTRLSLN 150
L A++A +I+ +I P ++T + +
Sbjct: 190 LQLAAQLAPQSIRANVIHPTNVNTDMLNS 218
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 89.5 bits (223), Expect = 3e-22
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
E ++ D+ + ++ + + ID+L+NN GI+ R + T D+ V+ N
Sbjct: 66 YASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGIT-RDVVFRKMTREDWQAVIDTNLT 124
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+TK ++ MV R G I+ +SSV G+ ++ Y+ +K + F +L EVA+
Sbjct: 125 SLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATK 184
Query: 132 NIKVTLISPGYIHT 145
+ V +SPGYI T
Sbjct: 185 GVTVNTVSPGYIGT 198
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 89.9 bits (224), Expect = 5e-22
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY-RGDIMSTNTDVDYKVMLVNYF 71
V+L DLSD + + A +DIL G +I ++ + VN F
Sbjct: 103 VLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVF 162
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
IT+ +P + + I+T SS+Q PH YAA+K A+ + L +VA
Sbjct: 163 ALFWITQEAIPLL--PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEK 220
Query: 132 NIKVTLISPGYIHT 145
I+V +++PG I T
Sbjct: 221 GIRVNIVAPGPIWT 234
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 89.1 bits (222), Expect = 5e-22
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDI--MSTNTDVDYKVMLVNY 70
+ +++D+ + +++ +E F RIDILINN ++ +S N + V+ +
Sbjct: 58 LTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVN-GWN-SVINIVL 115
Query: 71 FGQVAITKALLPSMVRRQ-SGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G ++A+ + + G+I+ + + A P AA+K + A TL E
Sbjct: 116 NGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWG 175
Query: 130 S-HNIKVTLISPGYIHT 145
+ I+V I+PG I
Sbjct: 176 RKYGIRVNAIAPGPIER 192
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 88.7 bits (221), Expect = 6e-22
Identities = 37/134 (27%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ L++++ ++E ++ F +DIL+NN GI+ R +++ + ++ +M N
Sbjct: 58 KGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGIT-RDNLLMRMKEEEWSDIMETNLT 116
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
++KA+L M++++ G I+ V SV G + ++ YAA+K + F ++ EVAS
Sbjct: 117 SIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASR 176
Query: 132 NIKVTLISPGYIHT 145
+ V ++PG+I T
Sbjct: 177 GVTVNTVAPGFIET 190
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 89.2 bits (222), Expect = 6e-22
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+D++DF + E E L+ F ++D+LINN GI+ R T D+ VM +
Sbjct: 78 KAYAVDVADFESCERCAEKVLADFGKVDVLINNAGIT-RDATFMKMTKGDWDAVMRTDLD 136
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+TK + MV R+ G IV + SV G ++ YA++K + F TL E A
Sbjct: 137 AMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKR 196
Query: 132 NIKVTLISPGYIHT 145
I V +SPGY+ T
Sbjct: 197 GITVNTVSPGYLAT 210
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 88.3 bits (220), Expect = 8e-22
Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
L L++SD +++ + IDIL+NN GI+ R ++M ++ ++ V+ N
Sbjct: 57 RGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGIT-RDNLMMRMSEDEWQSVINTNLS 115
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
++K + M++++ G I+++ SV G P ++ Y A+K + F +L EVAS
Sbjct: 116 SIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASR 175
Query: 132 NIKVTLISPGYIHT 145
NI V +++PG+I T
Sbjct: 176 NITVNVVAPGFIAT 189
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 88.8 bits (221), Expect = 8e-22
Identities = 45/133 (33%), Positives = 71/133 (53%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
V +LSD ++++ E A IDIL+NN GI+ G + V+ VN
Sbjct: 76 FVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTA 135
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+T+ L+ SM+RR+ G I+ ++S+ G + P ++ Y A+K L F L E+AS N
Sbjct: 136 ASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRN 195
Query: 133 IKVTLISPGYIHT 145
I V I+PG+I +
Sbjct: 196 ITVNCIAPGFIKS 208
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 87.9 bits (219), Expect = 1e-21
Identities = 38/134 (28%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ + D+++ + ++ + +F ++DIL+NN G++ + +++ + ++ V+ N
Sbjct: 57 IAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVT-KDNLLMRMKEEEWDTVINTNLK 115
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G TKA+ M+R++ G IV ++SV G P ++ Y A+K + T E+AS
Sbjct: 116 GVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASR 175
Query: 132 NIKVTLISPGYIHT 145
NI V I+PG+I T
Sbjct: 176 NITVNAIAPGFIAT 189
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 88.4 bits (220), Expect = 1e-21
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ ++ DL++ +E + A F I L++ G ++ + + +V+ VN
Sbjct: 61 LAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLT 120
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKI-AIPHRSAYAASKHALQAFCDTLRAEVAS 130
K LP M + G IVT SS G+ P AYA SK A+ F L EV
Sbjct: 121 SLFLTAKTALPKM--AKGGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP 178
Query: 131 HNIKVTLISPGYIHT 145
I+V + PG I T
Sbjct: 179 -KIRVNAVCPGMIST 192
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 88.6 bits (220), Expect = 1e-21
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 13 VVLELDLSDFTTMEERMET--ALSIFSRIDILINNGGISYR-GDIMSTNTDVDYKVMLVN 69
+LE+DL +F ++ + ++ +++L NN GI+ + I + + + N
Sbjct: 75 HILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTN 134
Query: 70 YFGQVAITKALLP-----------SMVRRQSGHIVTVSSVQGKIAIPHRS---AYAASKH 115
+ + KA LP + I+ +SS+ G I AY SK
Sbjct: 135 TVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKS 194
Query: 116 ALQAFCDTLRAEVASHNIKVTLISPGYIHTRLS 148
AL A +L ++ I + PG++ T +
Sbjct: 195 ALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 227
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 88.4 bits (220), Expect = 1e-21
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
V + D+ D ++ ++ L R+DI++ N GI+ MS D + V+ VN G
Sbjct: 77 VARQADVRDRESLSAALQAGLDELGRLDIVVANAGIA----PMSAGDDGWHDVIDVNLTG 132
Query: 73 QVAITKALLPSMVRRQS-GHIVTVSSVQG----KIAIPHRSAYAASKHALQAFCDTLRAE 127
K +P++V++ + G IV +SS G A P Y A+KH +
Sbjct: 133 VYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANL 192
Query: 128 VASHNIKVTLISPGYIHT 145
+A I+V I P + T
Sbjct: 193 LAGQMIRVNSIHPSGVET 210
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 87.9 bits (219), Expect = 1e-21
Identities = 35/134 (26%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
++ +++D ++ ++ +S F +D+L+NN GI+ R +++ + ++ V+ N
Sbjct: 57 FAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT-RDNLLMRMKEQEWDDVIDTNLK 115
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + P M+R++SG I+ +SSV G + P ++ Y A+K + + E+AS
Sbjct: 116 GVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASR 175
Query: 132 NIKVTLISPGYIHT 145
I V ++PG+I +
Sbjct: 176 GITVNAVAPGFIVS 189
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 87.9 bits (219), Expect = 1e-21
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVN 69
VL +L + + A + +D L+NN GI+ R ++ D D+ V+ N
Sbjct: 53 LVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGIT-RDTLLVRMKDEDWEAVLEAN 111
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
T+ + M++ + G IV ++SV G + P ++ Y ASK L F + E A
Sbjct: 112 LSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYA 171
Query: 130 SHNIKVTLISPGYIHT 145
I V ++PG+I T
Sbjct: 172 QRGITVNAVAPGFIET 187
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 88.0 bits (219), Expect = 2e-21
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
L+++D T ++ +E+ L F +++L+NN GI+ + + D ++ V+ N
Sbjct: 80 RGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGIT-QDQLAMRMKDDEWDAVIDTNLK 138
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
+++A+L M++ + G IV ++SV G P + YAA+K + L E+ S
Sbjct: 139 AVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSR 198
Query: 132 NIKVTLISPGYIHT 145
I V ++PG+I T
Sbjct: 199 GITVNCVAPGFIDT 212
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 87.5 bits (218), Expect = 2e-21
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
VV + D+ + +E ++TA+ F RIDIL+NN GI+ R +M ++ D+ V+ N
Sbjct: 58 VVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGIT-RDTLMLKMSEKDWDDVLNTNLK 116
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
TKA+ M++++SG I+ ++S+ G I ++ YAASK L F ++ E A+
Sbjct: 117 SAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAK 176
Query: 132 NIKVTLISPGYIHT 145
I ++PG I T
Sbjct: 177 GIYCNAVAPGIIKT 190
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 86.8 bits (216), Expect = 3e-21
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+ D+S +E M+TA+ + ID+++NN GI+ R ++ + +V+ +N
Sbjct: 54 ITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGIT-RDTLLIRMKKSQWDEVIDLNLT 112
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G T+A M++++ G I+ ++SV G I ++ YAA+K + F T E AS
Sbjct: 113 GVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASR 172
Query: 132 NIKVTLISPGYIHT 145
NI V ++ PG+I +
Sbjct: 173 NINVNVVCPGFIAS 186
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 87.2 bits (217), Expect = 3e-21
Identities = 36/134 (26%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYF 71
++ D+S + +E + + R+D+L+NN GI+ ++ D V+ +N
Sbjct: 81 FAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQ-SVLDLNLG 139
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G ++A M++++SG I+ ++SV G++ P ++ Y+A+K + T+ E+AS
Sbjct: 140 GVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASR 199
Query: 132 NIKVTLISPGYIHT 145
I V ++PG+I T
Sbjct: 200 GITVNAVAPGFIAT 213
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 87.8 bits (218), Expect = 3e-21
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 5 ADIPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTD---- 60
+ ++ FT E + + + R D+L+NN Y ++ + D
Sbjct: 72 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 131
Query: 61 ----------VDYKVMLVNYFGQVAITKALLPSMV------RRQSGHIVTVSSVQGKIAI 104
+ N + KA + R + I+ + +
Sbjct: 132 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL 191
Query: 105 PHRSAYAASKHALQAFCDTLRAEVASHNIKVTLISPGYI 143
+ Y +K AL+ + E+A I+V + PG
Sbjct: 192 LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 230
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 86.8 bits (216), Expect = 3e-21
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYF 71
+E++L ++ + E ++ IDIL+NN GI+ + + D + +V+ VN
Sbjct: 60 HGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWE-EVLKVNLT 118
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G +T+ L M++++ G IV +SSV G + Y+ +K L F +L E+A
Sbjct: 119 GTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPR 178
Query: 132 NIKVTLISPGYIHT 145
N+ V ++PG+I T
Sbjct: 179 NVLVNAVAPGFIET 192
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 86.8 bits (216), Expect = 4e-21
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
+E+D++D ++ +++L++N G+S + T+ + KV+ N
Sbjct: 56 FGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLS-ADAFLMRMTEEKFEKVINANLT 114
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + + SM R + G ++ + SV G I +++ YAASK + ++ E++
Sbjct: 115 GAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKA 174
Query: 132 NIKVTLISPGYIHT 145
N+ +++PGYI T
Sbjct: 175 NVTANVVAPGYIDT 188
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 86.4 bits (215), Expect = 4e-21
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYF 71
+ ++ D++D +E+ + +++LI N G++ +M + D V+ N
Sbjct: 62 LAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFT-SVVETNLT 120
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
G + K +M+R + G +V +SSV G + ++ YAASK L F +L E+ S
Sbjct: 121 GTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSR 180
Query: 132 NIKVTLISPGYIHT 145
NI +++PG++ T
Sbjct: 181 NITFNVVAPGFVDT 194
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 86.9 bits (216), Expect = 5e-21
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYF 71
D+S + E + L+ +DIL+NN GI+ R ++ + ++ V+ N
Sbjct: 96 SGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGIT-RDNLFLRMKNDEWEDVLRTNLN 154
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASH 131
IT+ + M+ + G I+ +SS+ G ++ Y++SK + F +L E+AS
Sbjct: 155 SLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASR 214
Query: 132 NIKVTLISPGYIHT 145
NI V I+PG+I +
Sbjct: 215 NITVNAIAPGFISS 228
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 87.1 bits (216), Expect = 8e-21
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 5 ADIPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTD---- 60
+ ++ FT E + + + R D+L+NN Y ++ + D
Sbjct: 109 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 168
Query: 61 ----------VDYKVMLVNYFGQVAITKALLPSMV------RRQSGHIVTVSSVQGKIAI 104
+ N + KA + R + I+ + +
Sbjct: 169 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL 228
Query: 105 PHRSAYAASKHALQAFCDTLRAEVASHNIKVTLISPGYI 143
+ Y +K AL+ + E+A I+V + PG
Sbjct: 229 LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 267
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 85.6 bits (213), Expect = 1e-20
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 15 LELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQ 73
+ +D++D ++E AL+ R+D +++ GI+ R + D+ V+ VN G
Sbjct: 54 VVMDVADPASVERGFAEALAHLGRLDGVVHYAGIT-RDNFHWKMPLEDWELVLRVNLTGS 112
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNI 133
+ KA +M + G IV +S + ++ YAAS + TL E+ I
Sbjct: 113 FLVAKAASEAMREKNPGSIVLTASRVY-LGNLGQANYAASMAGVVGLTRTLALELGRWGI 171
Query: 134 KVTLISPGYIHT 145
+V ++PG+I T
Sbjct: 172 RVNTLAPGFIET 183
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 85.7 bits (213), Expect = 1e-20
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQVAI 76
D+ + + F R+D L+NN GI + + +++ VN G +
Sbjct: 84 DVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILC 143
Query: 77 TKALLPSMVRRQS---GHIVTVSSVQGKIAIPHRSA-YAASKHALQAFCDTLRAEVASHN 132
+ M R S G IV VSS+ + + YAASK A+ F L EVA+
Sbjct: 144 AAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEG 203
Query: 133 IKVTLISPGYIHT 145
I+V + PG I T
Sbjct: 204 IRVNAVRPGIIET 216
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 85.4 bits (212), Expect = 1e-20
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 36/160 (22%)
Query: 15 LELDLSDFTTMEERMETALS-IFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFGQ 73
+ DLS ++ + L+ +D L+ G+ + ++ V+ VNYFG
Sbjct: 38 VIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN-------VVSVNYFGA 90
Query: 74 VAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHR-------------------------- 107
+ A LP++ + V +SSV +
Sbjct: 91 TELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQG 150
Query: 108 --SAYAASKHALQAFCDTLRAEVASHNIKVTLISPGYIHT 145
AYA SK+AL A +++ I+PG T
Sbjct: 151 GNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATET 190
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 87.1 bits (216), Expect = 3e-20
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYFGQVAI 76
D ++ ++ +ETA+ F + ++INN GI + T D V+ V+ G A+
Sbjct: 71 DYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYK-LVIDVHLNGAFAV 129
Query: 77 TKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVT 136
TKA P +++ G IV SS G ++ YA++K AL F +TL E A +NIK
Sbjct: 130 TKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKAN 189
Query: 137 LISPGYIHTRLS 148
I+P +R++
Sbjct: 190 AIAPL-ARSRMT 200
Score = 83.6 bits (207), Expect = 4e-19
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 21 DFTTMEERM-ETALSIFSRIDILINNGGISYRGDIMS-TNTDVDYKVMLVNYFGQVAITK 78
D E + + + + IDIL+NN GI + + D V V+ G +++
Sbjct: 377 DVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWD-SVQQVHLIGTFNLSR 435
Query: 79 ALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVTLI 138
P V +Q G I+ ++S G ++ Y++SK + T+ E A +NIKV ++
Sbjct: 436 LAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIV 495
Query: 139 SPGYIHTRLS 148
+P T ++
Sbjct: 496 APH-AETAMT 504
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 84.5 bits (210), Expect = 3e-20
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGG--ISYRGDIMS-TNTDVDYKVMLVN 69
++ D++ + + +E A+S F +ID LINN G + R ++ + + +++ N
Sbjct: 60 QFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWN-EMIQGN 118
Query: 70 YFGQVAITKALLPSMVRRQSGHIVTVS--SVQGKIAIPHRSAYAASKHALQAFCDTLRAE 127
+ K ++P M ++ G I+ +RSA+AA+K L + T+ E
Sbjct: 119 LTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYE 178
Query: 128 VASHNIKVTLISPGYIHT 145
A + I ++ PG I
Sbjct: 179 EAEYGITANMVCPGDIIG 196
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 83.9 bits (208), Expect = 5e-20
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 21/156 (13%)
Query: 14 VLELDLSDFTTMEERMETALSIFSR--IDILINNGGISY-RGDIMSTNTDVDYKVMLVNY 70
VL L ++ +++ + I + +LINN G+ G N V + + VN
Sbjct: 55 VLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNT 114
Query: 71 FGQVAITKALLP-----------SMVRRQSGHIVTVSSVQGKIAIPHR-------SAYAA 112
V +T+ LLP + ++T+SS G I AY
Sbjct: 115 TSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRM 174
Query: 113 SKHALQAFCDTLRAEVASHNIKVTLISPGYIHTRLS 148
SK A+ F TL ++ N+ V PG++ T L
Sbjct: 175 SKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG 210
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 85.8 bits (213), Expect = 6e-20
Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 15 LELDLSDFTTMEERMETALSIF-SRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFG 72
L LD++ +++ ++DIL+NN GI+ R +++ + + V+ VN
Sbjct: 264 LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGIT-RDKLLANMDEKRWDAVIAVNLLA 322
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+T+ L+ + + G ++ +SS+ G ++ YA +K + + L +A
Sbjct: 323 PQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKG 382
Query: 133 IKVTLISPGYIHT 145
I + ++PG+I T
Sbjct: 383 ITINAVAPGFIET 395
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 84.7 bits (210), Expect = 7e-20
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY-KVMLVNYFGQVAI 76
+ E+ ++TAL F RID+++NN GI +D D+ + V+ G +
Sbjct: 72 NYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRI-SDEDWDIIQRVHLRGSFQV 130
Query: 77 TKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVT 136
T+A M ++ G I+ +S G ++ Y+A+K L +TL E +NI
Sbjct: 131 TRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCN 190
Query: 137 LISPGYIHTRL 147
I+P +R+
Sbjct: 191 TIAPN-AGSRM 200
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 82.7 bits (205), Expect = 1e-19
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 36 FSRIDILINNGGISY--RGDIMSTNTDVDYKVMLVNYFGQVAITKALLPSMVRRQSGHIV 93
S + + +N G+S G + + ++V A LP + +G
Sbjct: 78 NSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEA 137
Query: 94 TVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVTLISPGYIHTRL 147
+ + H AYA SK+A+ + A +++ +++PG + T L
Sbjct: 138 RAIELAEQQGQTH-LAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPL 190
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 83.0 bits (206), Expect = 1e-19
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRI-DILINNGGISYRGDIMSTNTDVDY-KVMLVNY 70
+ D+S+ +E + FSR ++++ GI+ + + + ++ D+ KV+ VN
Sbjct: 66 AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGIT-QDEFLLHMSEDDWDKVIAVNL 124
Query: 71 FGQVAITKALLPSMVR-RQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
G +T+A ++V G I+ +SS+ GK+ ++ YAASK + T E+
Sbjct: 125 KGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELG 184
Query: 130 SHNIKVTLISPGYIHT 145
H I+ + PG+I T
Sbjct: 185 RHGIRCNSVLPGFIAT 200
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 82.6 bits (205), Expect = 1e-19
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
+ +L++ + S +DIL+ N GI+ + KV+ +N
Sbjct: 63 TIEVCNLANKEECSNLISK----TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKA 118
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+ + + M++++ G I+ +SS+ G P ++ Y ASK L +L EVA+
Sbjct: 119 NFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRG 178
Query: 133 IKVTLISPGYIHT 145
I V ++PG+I +
Sbjct: 179 ITVNAVAPGFIKS 191
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 82.4 bits (204), Expect = 3e-19
Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 47/189 (24%)
Query: 12 PVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYF 71
P +LD+ D ++ + + +D+L+NN GI+++ + M N+F
Sbjct: 56 PRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFF 115
Query: 72 GQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRS----------------------- 108
G + LLP + + G +V VSS+ A+ S
Sbjct: 116 GTRDVCTELLPLI--KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNK 173
Query: 109 ------------------AYAASKHALQAFC----DTLRAEVASHNIKVTLISPGYIHTR 146
AY +K + L + I + PG++ T
Sbjct: 174 FVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 233
Query: 147 LSLNAITGS 155
++ T S
Sbjct: 234 MAGPKATKS 242
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 80.4 bits (199), Expect = 1e-18
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 36 FSRIDILINNGGISYRGDIMSTNT--------DVDYKVMLVNYFGQVAITKALLPSMVRR 87
R+D+L+NN + + + N D + V G + MV
Sbjct: 81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWD-DINNVGLRGHYFCSVYGARLMVPA 139
Query: 88 QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKVTLISPGYIHT 145
G IV +SS + Y K A E+ H + + PG + T
Sbjct: 140 GQGLIVVISSPGS-LQYMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQT 196
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 80.2 bits (198), Expect = 5e-18
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTN-TDVDY-KVMLVNYFGQVA 75
D + + +ETA+ F R+DIL+NN GI R D ++ D+ V V+ G
Sbjct: 82 DYNSVIDGAKVIETAIKAFGRVDILVNNAGIL-R-DRSLVKTSEQDWNLVNDVHLKGSFK 139
Query: 76 ITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHNIKV 135
T+A P M ++ G I+ SS G + Y A+K L +T+ E A +N+
Sbjct: 140 CTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLC 199
Query: 136 TLISPGYIHTRLSLNAIT 153
+I P +R++ +
Sbjct: 200 NVIVPT-AASRMTEGILP 216
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 78.5 bits (194), Expect = 7e-18
Identities = 25/141 (17%), Positives = 59/141 (41%), Gaps = 11/141 (7%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNT---DVDY--KVMLVNYFG 72
+++ ++ +E A + ++ +GG I+ + D+ K + + G
Sbjct: 84 NVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNG 143
Query: 73 QVAITKALLPSMVRR------QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRA 126
+ + + S+ + G +V +S+ G ++AYAA+K +
Sbjct: 144 TYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAAR 203
Query: 127 EVASHNIKVTLISPGYIHTRL 147
+++S I+V I+PG + T +
Sbjct: 204 DLSSAGIRVNTIAPGTMKTPI 224
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 77.8 bits (192), Expect = 2e-17
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTN-TDVDY-KVMLVNYFGQVA 75
+++D+ ++TA+ F +D+L+NN GI R D M N ++ ++ V+ V+ G A
Sbjct: 94 NVADWDQAAGLIQTAVETFGGLDVLVNNAGI-VR-DRMIANTSEEEFDAVIAVHLKGHFA 151
Query: 76 ITKALLPSM------VRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVA 129
+ + G I+ SS G + Y+A+K + AE+
Sbjct: 152 TMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMG 211
Query: 130 SHNIKVTLISPGYIHTRL 147
+ + V I+P TR+
Sbjct: 212 RYGVTVNAIAPS-ARTRM 228
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 70.8 bits (174), Expect = 3e-15
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY------KVMLVNYF 71
D++ ++ + A F R+D+ +N GI+ + + +V+ VN
Sbjct: 66 DVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLM 125
Query: 72 GQVAITKALLPSMVRR------QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLR 125
G + + + M + Q G I+ +SV ++AY+ASK + +
Sbjct: 126 GTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIA 185
Query: 126 AEVASHNIKVTLISPGYIHTRL 147
++A I+V I+PG T L
Sbjct: 186 RDLAPIGIRVMTIAPGLFGTPL 207
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 70.7 bits (174), Expect = 4e-15
Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY----KVMLVNYFGQ 73
D+++ + A F + L+N G + I+ + + + VN G
Sbjct: 61 DVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGT 120
Query: 74 VAITKALLPSMVRR------QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAE 127
+ + M + + G IV +S+ ++AYAASK + A E
Sbjct: 121 FNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAARE 180
Query: 128 VASHNIKVTLISPGYIHTRL 147
+A I+V I+PG T +
Sbjct: 181 LARFGIRVVTIAPGIFDTPM 200
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 68.4 bits (168), Expect = 2e-14
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 13/156 (8%)
Query: 4 LADIPTYAPVVL--ELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDV 61
+ D+ ++ E D++ + + A + + +++ G+ I+
Sbjct: 31 VLDLRREGEDLIYVEGDVTREEDVRRAVARAQE-EAPLFAVVSAAGVGLAEKILGKEGPH 89
Query: 62 DY----KVMLVNYFGQVAITKALLPSMVRR------QSGHIVTVSSVQGKIAIPHRSAYA 111
+V+ VN G + + +M Q G IV +SV ++AYA
Sbjct: 90 GLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYA 149
Query: 112 ASKHALQAFCDTLRAEVASHNIKVTLISPGYIHTRL 147
ASK + A E+A I+V ++PG T L
Sbjct: 150 ASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL 185
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 64.9 bits (159), Expect = 5e-13
Identities = 29/142 (20%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 18 DLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMSTNTDVDY----KVMLVNYFGQ 73
D++D + ++ A + + I++N G ++S + K++ +N G
Sbjct: 60 DVTDEAAVASALDLAET-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGS 118
Query: 74 VAITKALLPSMVRR--------QSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLR 125
+ + + + + G I+ +SV ++AY+ASK + +
Sbjct: 119 FNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIA 178
Query: 126 AEVASHNIKVTLISPGYIHTRL 147
++ASH I+V I+PG T L
Sbjct: 179 RDLASHRIRVMTIAPGLFDTPL 200
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 62.6 bits (153), Expect = 4e-12
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 33/154 (21%)
Query: 13 VVLELDLSDFTTMEERMETALSIFSRIDILINNGGISYRGDIMST--NTDVD-YKVML-V 68
V ELDL D +++ + S D+LINN G IM+ VD ++ +
Sbjct: 65 EVRELDLQDLSSVRRFADG----VSGADVLINNAG------IMAVPYALTVDGFESQIGT 114
Query: 69 NYFGQVAITKALLPSMVRRQSGHIVTVSSV---QGKIAI-----PHRS-----AYAASKH 115
N+ G A+T LLP + R +VTVSS+ G+I + R AY+ SK
Sbjct: 115 NHLGHFALTNLLLPRLTDR----VVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKL 170
Query: 116 ALQAFCDTL--RAEVASHNIKVTLISPGYIHTRL 147
A F L R A ++ PGY HT L
Sbjct: 171 ANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNL 204
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 62.7 bits (152), Expect = 5e-12
Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 76/221 (34%)
Query: 2 KRLADIPTYAPVVLELDLSDFTTMEERM-ETALSIFSRIDILINNGGISYRG-------- 52
++L + V +LD++D + + + F ++DIL+NN G++
Sbjct: 54 EKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKA 113
Query: 53 ----------------------DIMSTNTDVDYKVMLVNYFGQVAITKALLPSMVRRQSG 90
++MS ++ + + +NY G ++T+ L+P + S
Sbjct: 114 MISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSP 173
Query: 91 HIVTVSSVQGKIAIPH-------------------------------------------R 107
IV VSS G +
Sbjct: 174 RIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFG 233
Query: 108 SAYAASKHALQAFCDTLRAEVASHNIKVTLISPGYIHTRLS 148
+AY SK L A+ L ++ +V + PG + T ++
Sbjct: 234 AAYTTSKACLNAYTRVLANKIP--KFQVNCVCPGLVKTEMN 272
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 46.4 bits (111), Expect = 1e-06
Identities = 31/171 (18%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
+ +VL+ D+++ +++ ++ + D ++ I + GD ++ T +K
Sbjct: 60 SDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVH--SIGFAPGDQLDGDYVNAVTREGFK 117
Query: 65 V-MLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDT 123
+ ++ + VA+ KA + ++T+S + + AIP+ + +K +L+A
Sbjct: 118 IAHDISSYSFVAMAKACRSML--NPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRY 175
Query: 124 LRAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
+ + ++V IS G I T L+ + I +R++T
Sbjct: 176 MANAMGPEGVRVNAISAGPIRT-LAASGIKDFRKMLAHCEAVTPIRRTVTI 225
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 44.9 bits (107), Expect = 6e-06
Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
+ +V++ D+S ++ + + +DI+++ I+Y +G ++ T+ +
Sbjct: 72 SDLVVKCDVSLDEDIKNLKKFLEENWGSLDIIVH--SIAYAPKEEFKGGVIDTSREGFKI 129
Query: 65 VMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTL 124
M ++ + +A+T+ LLP M ++G IVT+S + +PH + +K AL++ L
Sbjct: 130 AMDISVYSLIALTRELLPLM-EGRNGAIVTLSYYGAEKVVPHYNVMGIAKAALESTVRYL 188
Query: 125 RAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
++A H ++ IS G + T L+ +ITG + IT
Sbjct: 189 AYDIAKHGHRINAISAGPVKT-LAAYSITGFHLLMEHTTKVNPFGKPITI 237
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 44.5 bits (106), Expect = 6e-06
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 18/170 (10%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
++ D++ ++ F +D L++ I++ G + T
Sbjct: 59 GALLFRADVTQDEELDALFAGVKEAFGGLDYLVH--AIAFAPREAMEGRYIDTRRQDWLL 116
Query: 65 VMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTL 124
+ V+ + VA+ + P + R+ G IVT++ + +P + A +K AL+A L
Sbjct: 117 ALEVSAYSLVAVARRAEPLL--REGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYL 174
Query: 125 RAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
E+ ++V IS G + T ++ +I G Y +R+IT
Sbjct: 175 AYELGPKGVRVNAISAGPVRT-VAARSIPGFTKMYDRVAQTAPLRRNITQ 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-06
Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 103/279 (36%)
Query: 10 YA--PVVLELDLSDFTTMEERMETALSIFSRIDILINN--------GGISYRG-----DI 54
Y ++ + + + FS +DI+INN GG +
Sbjct: 1636 YKTSKAAQDV----WNRADNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 55 MSTNTDVDYKVMLVNYFG------------------------QVAIT---KALLPSMVRR 87
M T VD K+ F Q A+T KA + +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL--K 1748
Query: 88 QSGHIVTVSSVQGKIAIPHR----SAYAASKHALQAFCDTL---------------RAEV 128
G I ++ G H +A A+ + + + R E+
Sbjct: 1749 SKGLIPADATFAG-----HSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 129 ASHNIKVTLISPGYIHTRLSLNAI----------TG----------SGHTY---GEKRSI 165
N + I+PG + S A+ TG Y G+ R++
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 166 TTLYGAPKDWISSKI-KIFLVHSHETVTQCYYRVWAHIW 203
T+ K+ KI ++ ++++ V H++
Sbjct: 1863 DTVTNVLN---FIKLQKIDIIELQKSLS--LEEVEGHLF 1896
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 44.1 bits (105), Expect = 9e-06
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 2 KRLAD-IPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDI 54
LA + ++L D+++ +E + I + + I++ G+
Sbjct: 50 HELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAH--CIAFANKEELVGEY 107
Query: 55 MSTNTDVDYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASK 114
++TN D ++ + A+ KA P M + G IVT++ + G++ +P+ + +K
Sbjct: 108 LNTNRDGFLLAHNISSYSLTAVVKAARPMM--TEGGSIVTLTYLGGELVMPNYNVMGVAK 165
Query: 115 HALQAFCDTLRAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
+L A L A++ NI+V IS G I T LS I+ + +R+ T
Sbjct: 166 ASLDASVKYLAADLGKENIRVNSISAGPIRT-LSAKGISDFNSILKDIEERAPLRRTTTP 224
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 43.4 bits (103), Expect = 2e-05
Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 19/180 (10%)
Query: 2 KRLAD-IPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDI 54
++L + + + ++D+ + E ID + + I++ RG
Sbjct: 75 EKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYH--SIAFANMEDLRGRF 132
Query: 55 MSTNTDVDYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASK 114
T+ + ++ + + M + G IV + + G+ A+ + + +K
Sbjct: 133 SETSREGFLLAQDISSYSLTIVAHEAKKLM--PEGGSIVATTYLGGEFAVQNYNVMGVAK 190
Query: 115 HALQAFCDTLRAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
+L+A L ++ NI+V IS G I T LS + G E KR++
Sbjct: 191 ASLEANVKYLALDLGPDNIRVNAISAGPIRT-LSAKGVGGFNTILKEIEERAPLKRNVDQ 249
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 43.3 bits (103), Expect = 2e-05
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
+ +V D++D ++ + + + +D L++ I + GD + T +++
Sbjct: 65 SELVFPCDVADDAQIDALFASLKTHWDSLDGLVH--SIGFAPREAIAGDFLDGLTRENFR 122
Query: 65 V-MLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDT 123
+ ++ + A+ KA LP + ++T+S + + AIP+ + +K AL+A
Sbjct: 123 IAHDISAYSFPALAKAALPML--SDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRY 180
Query: 124 LRAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
L + + ++V IS G I T L+ + I G KR++T
Sbjct: 181 LAVSLGAKGVRVNAISAGPIKT-LAASGIKSFGKILDFVESNSPLKRNVTI 230
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 43.0 bits (102), Expect = 2e-05
Identities = 29/170 (17%), Positives = 70/170 (41%), Gaps = 18/170 (10%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
+P V ELD+S + + +D +++ +++ G ++ T+
Sbjct: 57 SPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVH--SVAFAPKEALEGSLLETSKSAFNT 114
Query: 65 VMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTL 124
M ++ + + +T L P + ++T+S + + H + +K AL++ L
Sbjct: 115 AMEISVYSLIELTNTLKPLL--NNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYL 172
Query: 125 RAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
++ H+I+V +S G I T L+ + I +++++
Sbjct: 173 AVDLGKHHIRVNALSAGPIRT-LASSGIADFRMILKWNEINAPLRKNVSL 221
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 43.0 bits (102), Expect = 2e-05
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
A V D++D +++ ET + ++D L++ I + G + T+
Sbjct: 82 AFVAGHCDVADAASIDAVFETLEKKWGKLDFLVH--AIGFSDKDELTGRYIDTSEANFTN 139
Query: 65 VMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTL 124
ML++ + A+++ M G I+T++ + +P+ + +K AL+A L
Sbjct: 140 TMLISVYSLTAVSRRAEKLM--ADGGSILTLTYYGAEKVMPNYNVMGVAKAALEASVKYL 197
Query: 125 RAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
++ NI+V IS G I T L+ + I + +R++T
Sbjct: 198 AVDLGPQNIRVNAISAGPIKT-LAASGIGDFRYILKWNEYNAPLRRTVTI 246
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 43.0 bits (102), Expect = 2e-05
Identities = 26/171 (15%), Positives = 67/171 (39%), Gaps = 18/171 (10%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
VL D+ +++ ++ +D +++ I++ G+ + T +
Sbjct: 76 PAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVH--SIAFAPRDQLEGNFIDCVTREGFS 133
Query: 65 V-MLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDT 123
+ ++ + A+ K M + ++ +V ++ + + A+P + +K +L+A
Sbjct: 134 IAHDISAYSFAALAKEGRSMM-KNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRY 192
Query: 124 LRAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
+ IKV +S G I T L+ + I+ K+++
Sbjct: 193 TALALGEDGIKVNAVSAGPIKT-LAASGISNFKKMLDYNAMVSPLKKNVDI 242
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 43.0 bits (102), Expect = 2e-05
Identities = 31/170 (18%), Positives = 68/170 (40%), Gaps = 18/170 (10%)
Query: 11 APVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY------RGDIMSTNTDVDYK 64
+ + D+SD +++ + + +D +++ +++ +G + T+
Sbjct: 81 VKLTVPCDVSDAESVDNMFKVLAEEWGSLDFVVH--AVAFSDKNELKGRYVDTSLGNFLT 138
Query: 65 VMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTL 124
M ++ + I P M G I+T+S + +PH + K AL+A L
Sbjct: 139 SMHISCYSFTYIASKAEPLM--TNGGSILTLSYYGAEKVVPHYNVMGVCKAALEASVKYL 196
Query: 125 RAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGE-------KRSITT 167
++ I+V IS G + T L+ + I+ + +R+ T
Sbjct: 197 AVDLGKQQIRVNAISAGPVRT-LASSGISDFHYILTWNKYNSPLRRNTTL 245
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 38.4 bits (90), Expect = 6e-04
Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 2 KRLADIPTYAPVVLELDLSDFTTME---ERMETALSIFSRIDILINNGGISY-------R 51
+R+ D +LELD+ + + R+ A+ +++D +++ I +
Sbjct: 48 QRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVH--SIGFMPQTGMGI 105
Query: 52 GDIMSTNTDVDYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYA 111
K + ++ + ++ KALLP M G IV + A+P +
Sbjct: 106 NPFFDAPYADVSKGIHISAYSYASMAKALLPIM--NPGGSIVGMDF-DPSRAMPAYNWMT 162
Query: 112 ASKHALQAFCDTLRAEVASHNIKVTLISPGYIHTRLSLNAITGSGHTYGEKRSITTLY 169
+K AL++ + E + ++ L++ G I T L+++AI G I L
Sbjct: 163 VAKSALESVNRFVAREAGKYGVRSNLVAAGPIRT-LAMSAIVGGALGEEAGAQIQLLE 219
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 37.1 bits (86), Expect = 0.002
Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 25/163 (15%)
Query: 11 APVVLELDLSD--------FTTMEERMETALSIFSRIDILINNGGISY----RGDIMSTN 58
P + D+ D T++E IDIL++ ++ ++ T+
Sbjct: 85 KPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVH--SLANGPEVTKPLLETS 142
Query: 59 TDVDYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYA----ASK 114
+ + V++ + P M + G VT+S + + +P Y ++K
Sbjct: 143 RKGYLAASSNSAYSFVSLLQHFGPIM--NEGGSAVTLSYLAAERVVPG---YGGGMSSAK 197
Query: 115 HALQAFCDTLRAEV-ASHNIKVTLISPGYIHTRLSLNAITGSG 156
AL++ TL E + ++V IS G + + + +AI SG
Sbjct: 198 AALESDTRTLAWEAGQKYGVRVNAISAGPLKS-RAASAIGKSG 239
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 36.7 bits (85), Expect = 0.003
Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 11 APVVLELDLSD--------FTTMEERMETALSIFSRIDILINNGGISY----RGDIMSTN 58
P + ++S T+ E E + +IDIL++ ++ ++ T+
Sbjct: 98 TPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVH--SLANGPEVTKPLLQTS 155
Query: 59 TDVDYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAY----AASK 114
+ + + V++ + LP M ++ G + +S + + IP Y +++K
Sbjct: 156 RKGYLAAVSSSSYSFVSLLQHFLPLM--KEGGSALALSYIASEKVIPG---YGGGMSSAK 210
Query: 115 HALQAFCDTLRAEV-ASHNIKVTLISPGYIHTRLSLNAITGSGHT 158
AL++ C TL E + ++V IS G + + + +AI +G
Sbjct: 211 AALESDCRTLAFEAGRARAVRVNCISAGPLKS-RAASAIGKAGDK 254
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 35.3 bits (81), Expect = 0.008
Identities = 29/206 (14%), Positives = 77/206 (37%), Gaps = 17/206 (8%)
Query: 6 DIPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY----RGDIMSTNTDV 61
DI ++ T+E+ + +I++L++ ++ + D+++T+
Sbjct: 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVH--SLANAKEVQKDLLNTSRKG 138
Query: 62 DYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYA----ASKHAL 117
+ + + +++ K + M + I++++ + +P Y ++K AL
Sbjct: 139 YLDALSKSSYSLISLCKYFVNIM--KPQSSIISLTYHASQKVVPG---YGGGMSSAKAAL 193
Query: 118 QAFCDTLRAEV-ASHNIKVTLISPGYIHTRLSLNAITGSGHTYGEKRSITTLYGAPKDWI 176
++ L + ++NI++ IS G + + + AI +TY +
Sbjct: 194 ESDTRVLAYHLGRNYNIRINTISAGPLKS-RAATAINKLNNTYENNTNQNKNRNRHDVHN 252
Query: 177 SSKIKIFLVHSHETVTQCYYRVWAHI 202
+ +Q Y + I
Sbjct: 253 IMNNSGEKEEKKISASQNYTFIDYAI 278
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 35.5 bits (82), Expect = 0.008
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 6 DIPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNGGISY----RGDIMSTNTDV 61
D+P S T++E E F IDIL++ ++ ++ T+
Sbjct: 87 DVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVH--SLANGPEVSKPLLETSRKG 144
Query: 62 DYKVMLVNYFGQVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAY----AASKHAL 117
+ + + V++ LP M G ++++ + + IP Y +++K AL
Sbjct: 145 YLAAISASSYSFVSLLSHFLPIM--NPGGASISLTYIASERIIPG---YGGGMSSAKAAL 199
Query: 118 QAFCDTLRAEV-ASHNIKVTLISPGYIHTR 146
++ L E NI+V IS G + +R
Sbjct: 200 ESDTRVLAFEAGRKQNIRVNTISAGPLGSR 229
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional
regulator LYSR struc genomics, PSI-2, protein structure
initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Length = 238
Score = 30.3 bits (69), Expect = 0.31
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 79 ALLPSMVRRQSGHIVTVS----SVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
LLP+ + Q + +S ++ + R + A +AF + A
Sbjct: 177 TLLPAAIATQHDGLKAISLAPPLLERTAVLLRRKNSWQT-AAAKAFLHMALDKCAVVG 233
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.93
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
Query: 161 EKRSITTL------YG---APKDWISSKIK 181
EK+++ L Y AP I + ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>4ab5_A Transcriptional regulator, LYSR family; transcription factors;
2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Length = 222
Score = 28.8 bits (65), Expect = 1.1
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 79 ALLPSMVRR---QSGHIVTVSSVQGKIAIPHRSAYAASKH---ALQAFCDTLRAEVASH 131
A LP + G++V + +A L FC +R +
Sbjct: 154 AALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIRTEDTDKSYLNNFCQIIRERGFAD 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.9
Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 51/185 (27%)
Query: 14 VLELDLSDFTTMEER-METALSIFSRIDILINNGGISYRGDIMSTNTDVDYKVMLVNYFG 72
++E L+ E R M LS+F I +S ++ + +++VN
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLS----LIWFDVIKSDVMVVVNKL- 411
Query: 73 QVAITKALLPSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAEVASHN 132
+L+ ++ +++ S+ ++ + + YA H R+ V +N
Sbjct: 412 ---HKYSLV---EKQPKESTISIPSIYLELKVKLENEYA--LH---------RSIVDHYN 454
Query: 133 IKVTL----ISP----GYIHTRLSLNAITGSGH-----TYGEKRSI-TTLYGAPKD--WI 176
I T + P Y ++ + GH + E+ ++ ++ D ++
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHI--------GHHLKNIEHPERMTLFRMVF---LDFRFL 503
Query: 177 SSKIK 181
KI+
Sbjct: 504 EQKIR 508
>2qsx_A Putative transcriptional regulator, LYSR family; the putative
transcriptional regulator, PSI-2, structure initiative,
MCSG; 1.64A {Vibrio parahaemolyticus}
Length = 218
Score = 26.4 bits (59), Expect = 6.0
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 79 ALLPS-MVRR--QSGHIVTVSSVQGKIAIPHRSAY-------AASKHALQAFCDTLRAEV 128
ALLP M + G I + + + + Y + + F D L+ ++
Sbjct: 159 ALLPDFMAQFSILRGDIQHIGN----LKLHSGYGYYVVIPNFRLTSRKVALFHDWLKDKL 214
Query: 129 ASH 131
H
Sbjct: 215 THH 217
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 26.3 bits (58), Expect = 7.6
Identities = 13/138 (9%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 37 SRIDILINNGGISYRGDIMSTNT------DVDYKVMLVNYFGQVAITKALLPSMVRRQSG 90
++I GD+++ D + +++ +M
Sbjct: 59 AKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVK 118
Query: 91 HIVTVSSVQGKIAIPHRSAYAASKHALQAFCDTLRAE--VASHNIKVTLISPGYIHTRLS 148
++ V S+ +P + + + RA + + ++ T++ P ++
Sbjct: 119 RLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDI 178
Query: 149 LNAITGSGHTYGEKRSIT 166
++ S + + ++
Sbjct: 179 IDYELTSRNEPFKGTIVS 196
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 26.6 bits (58), Expect = 8.2
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 8/139 (5%)
Query: 1 MKRLADIPTYAPVVLELDLSDFTTMEERMETALSIFSRIDILINNG-GISYRGDIMSTNT 59
+K L + + + +D + +E ++ + ++ NG G +
Sbjct: 353 LKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPL 412
Query: 60 DVDYKVMLVNYFGQ---VAITKALL--PSMVRRQSGHIVTVSSVQGKIAIPHRSAYAASK 114
+DY + L + + + K + R Q + K+ +Y A
Sbjct: 413 VIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYT--DVSYLACA 470
Query: 115 HALQAFCDTLRAEVASHNI 133
L A + + + A+HN
Sbjct: 471 KKLLAVPNLIYPQFATHNA 489
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 26.0 bits (58), Expect = 8.6
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 18 DLSDFTTMEERME----TAL--SIFSRI-DILINNGGI--SYRGD-IM 55
D+ FT + E +E T L + + + I + GG + GD +M
Sbjct: 16 DIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVM 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.395
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,134,178
Number of extensions: 179123
Number of successful extensions: 964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 221
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.7 bits)