BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9662
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|G Chain G, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 128
Score = 197 bits (501), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/102 (96%), Positives = 99/102 (97%)
Query: 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 68
FPVGRIHRHLK+RTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 86
Query: 69 LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV 110
LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKG QK V
Sbjct: 87 LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV 128
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 142 bits (358), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 76/88 (86%)
Query: 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 68
FPVGRI R+LK T RVG+ AA+Y A+LEYLTAEVLELAGNA+KDLKVKRITPRH
Sbjct: 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRH 164
Query: 69 LQLAIRGDEELDSLIKATIAGGGVIPHI 96
LQLAIRGD+ELDSLI+ATIA GGV+PHI
Sbjct: 165 LQLAIRGDDELDSLIRATIASGGVLPHI 192
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 129
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 26 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 85 QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
Length = 128
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 25 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 84 QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 119
>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Length = 130
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ S RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 26 FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 85 QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 149
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ S RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 45 FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 103
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 104 QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 139
>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|G Chain G, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|C Chain C, The Human Nucleosome Structure
pdb|3AFA|G Chain G, The Human Nucleosome Structure
pdb|3AV1|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|C Chain C, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|G Chain G, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 133
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ S RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 29 FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 87
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 88 QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 123
>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 129
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 25 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 84 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|G Chain G, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|CC Chain c, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|GG Chain g, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|C Chain C, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|G Chain G, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|3LJA|C Chain C, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|G Chain G, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|C Chain C, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|G Chain G, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3TU4|C Chain C, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|G Chain G, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|C Chain C, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|G Chain G, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|C Chain C, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|G Chain G, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|C Chain C, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|G Chain G, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|C Chain C, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|G Chain G, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|C Chain C, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|G Chain G, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 129
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 25 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 84 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 107
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 12 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 70
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 71 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 106
>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 129
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 25 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 84 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|G Chain G, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 22 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 80
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 81 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 116
>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|G Chain G, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|2NZD|C Chain C, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|G Chain G, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3KUY|C Chain C, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|G Chain G, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3MGP|C Chain C, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|G Chain G, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|C Chain C, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|G Chain G, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|C Chain C, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|G Chain G, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|C Chain C, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|G Chain G, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|C Chain C, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|G Chain G, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
Length = 119
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 25 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 84 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure
pdb|2NQB|G Chain G, Drosophila Nucleosome Structure
Length = 123
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D K RI PRHL
Sbjct: 24 FPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 82
Query: 70 QLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGTQK 108
QLAIR DEEL+ L+ TIA GGV+P+I L+ KK +K
Sbjct: 83 QLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 122
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 131
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ R R+G+ A VY A+LEYL AE+LELAGNA++D K RI PRHL
Sbjct: 26 FPVGRVHRLLR-RGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHL 84
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGTQ 107
QLAIR D+EL+ L+ TIA GGV+P+IH++L+ KK +
Sbjct: 85 QLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 123
>pdb|2PYO|C Chain C, Drosophila Nucleosome Core
pdb|2PYO|G Chain G, Drosophila Nucleosome Core
Length = 120
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D K RI PRHL
Sbjct: 24 FPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 82
Query: 70 QLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 83 QLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 118
>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|C Chain C, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|G Chain G, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|3B6F|C Chain C, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|G Chain G, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|C Chain C, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|G Chain G, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3LEL|C Chain C, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|G Chain G, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|M Chain M, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|Q Chain Q, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3O62|C Chain C, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|G Chain G, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
Length = 128
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 71/93 (76%), Gaps = 2/93 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 25 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI 101
QLA+R DEEL+ L+ + TIA GGV+P+I L+
Sbjct: 84 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLL 116
>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|G Chain G, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 129
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGN +D K RI PRHL
Sbjct: 25 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNWERDNKKTRIIPRHL 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 84 QLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 95
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 11 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 69
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIP 94
QLAIR DEEL+ L+ K TIA GGV+P
Sbjct: 70 QLAIRNDEELNKLLGKVTIAQGGVLP 95
>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|G Chain G, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|G Chain G, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 120
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA NA++D K R+TPRH+
Sbjct: 23 FPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHI 81
Query: 70 QLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKK 104
LA+ DEEL+ L+K TIA GGV+P+IH L+ KK
Sbjct: 82 LLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 117
>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|C Chain C, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|E Chain E, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|G Chain G, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|I Chain I, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5)
Length = 91
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 11 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 69
Query: 70 QLAIRGDEELDSLI-KATIAGG 90
QLAIR DEEL+ L+ K TIA G
Sbjct: 70 QLAIRNDEELNKLLGKVTIAQG 91
>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|B Chain B, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|C Chain C, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|D Chain D, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|E Chain E, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|F Chain F, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|G Chain G, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|H Chain H, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|I Chain I, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
Length = 191
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 68
+ PV +IH LK ++ +VY A+LEY++A++L+LAGN ++++ IT +
Sbjct: 104 SLPVEKIHPLLKE--VLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQD 161
Query: 69 LQLAIRGDEELDSLIKATIAGGGVI 93
+++A D+ L + ++
Sbjct: 162 IKVAXCADKVLXDXFHQDVEDINIL 186
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 68
+ PV +IH LK ++ +VY A+LEY++A++L+L GN ++++ IT +
Sbjct: 104 SLPVEKIHPLLKEVLGY--KIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQD 161
Query: 69 LQLAIRGDEEL 79
+++A+ D+ L
Sbjct: 162 IKVAMCADKVL 172
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 41 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATI 87
LE L + EL N K R+ P +Q IR +EE+++L+K+T+
Sbjct: 52 LERLKSAADELQANLPPT-KQARVIP--IQCNIRNEEEVNNLVKSTL 95
>pdb|3FIN|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 177
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 16 HRHLKNRT----TSHGRVGATAAVYSAAILEYLTAEVLE-LAGNASKDLKVKRITPRHLQ 70
+RHL + +V A+++ +LE + L L + D + +R P H+
Sbjct: 28 NRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRR--PEHVD 85
Query: 71 LAIRGDEELDSLIKATIAG-------GGVIPHIHKSLIGK 103
+ DE ++ + G GGV+ IH+ ++ K
Sbjct: 86 FFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVK 125
>pdb|3TVH|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 179
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 16 HRHLKNRT----TSHGRVGATAAVYSAAILEYLTAEVLE-LAGNASKDLKVKRITPRHLQ 70
+RHL + +V A+++ +LE + L L + D + +R P H+
Sbjct: 30 NRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRR--PEHVD 87
Query: 71 LAIRGDEELDSLIKATIAG-------GGVIPHIHKSLIGK 103
+ DE ++ + G GGV+ IH+ ++ K
Sbjct: 88 FFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVK 127
>pdb|1FEU|A Chain A, Crystal Structure Of Ribosomal Protein Tl5, One Of The Ctc
Family Proteins, Complexed With A Fragment Of 5s Rrna.
pdb|1FEU|D Chain D, Crystal Structure Of Ribosomal Protein Tl5, One Of The Ctc
Family Proteins, Complexed With A Fragment Of 5s Rrna
Length = 206
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 16 HRHLKNRT----TSHGRVGATAAVYSAAILEYLTAEVLE-LAGNASKDLKVKRITPRHLQ 70
+RHL + +V A+++ +LE + L L + D + +R P H+
Sbjct: 30 NRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRR--PEHVD 87
Query: 71 LAIRGDEELDSLIKATIAG-------GGVIPHIHKSLIGK 103
+ DE ++ + G GGV+ IH+ ++ K
Sbjct: 88 FFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVK 127
>pdb|2J01|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|Y Chain Y, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|Y Chain Y, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|Y Chain Y, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|T Chain T, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|Z Chain Z, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|Z Chain Z, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|T Chain T, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|Z Chain Z, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|Z Chain Z, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|Z Chain Z, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|Z Chain Z, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|Z Chain Z, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|Z Chain Z, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|Z Chain Z, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|Z Chain Z, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|Z Chain Z, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|Z Chain Z, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|Z Chain Z, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|Z Chain Z, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|Z Chain Z, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|Z Chain Z, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|Z Chain Z, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|Z Chain Z, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|Z Chain Z, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|Z Chain Z, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|V Chain V, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|V Chain V, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|V Chain V, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|V Chain V, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|Z Chain Z, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|Z Chain Z, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|3MRZ|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|2XG0|Z Chain Z, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|Z Chain Z, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|Z Chain Z, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|Z Chain Z, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|Z Chain Z, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|Z Chain Z, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|Z Chain Z, Ef-Tu Complex 3
pdb|2Y19|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|Z Chain Z, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|Z Chain Z, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|Z Chain Z, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|Z Chain Z, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|Z Chain Z, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|Z Chain Z, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|Z Chain Z, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|Z Chain Z, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|Z Chain Z, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|Z Chain Z, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|Z Chain Z, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|V Chain V, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|V Chain V, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|V Chain V, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|V Chain V, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 206
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 16 HRHLKNRT----TSHGRVGATAAVYSAAILEYLTAEVLE-LAGNASKDLKVKRITPRHLQ 70
+RHL + +V A+++ +LE + L L + D + +R P H+
Sbjct: 30 NRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRR--PEHVD 87
Query: 71 LAIRGDEELDSLIKATIAG-------GGVIPHIHKSLIGK 103
+ DE ++ + G GGV+ IH+ ++ K
Sbjct: 88 FFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVK 127
>pdb|3PYO|V Chain V, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|V Chain V, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|V Chain V, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|V Chain V, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 188
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 16 HRHLKNRT----TSHGRVGATAAVYSAAILEYLTAEVLE-LAGNASKDLKVKRITPRHLQ 70
+RHL + +V A+++ +LE + L L + D + +R P H+
Sbjct: 28 NRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRR--PEHVD 85
Query: 71 LAIRGDEELDSLIKATIAG-------GGVIPHIHKSLIGK 103
+ DE ++ + G GGV+ IH+ ++ K
Sbjct: 86 FFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVK 125
>pdb|3TVE|V Chain V, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 175
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 16 HRHLKNRT----TSHGRVGATAAVYSAAILEYLTAEVLE-LAGNASKDLKVKRITPRHLQ 70
+RHL + +V A+++ +LE + L L + D + +R P H+
Sbjct: 30 NRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRR--PEHVD 87
Query: 71 LAIRGDEELDSLIKATIAG-------GGVIPHIHKSLIGK 103
+ DE ++ + G GGV+ IH+ ++ K
Sbjct: 88 FFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVK 127
>pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura)
From Listeria Monocytogenes Egd-E
Length = 454
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 70 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQ 107
++ +RG ++L+ +K A V+P I +L+ KGT
Sbjct: 27 KIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTS 64
>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
pdb|4EJM|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
Bound To Nadp
Length = 370
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 28 RVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
+ G+T A+ ++ LT ++ LAG + L ++ T R L
Sbjct: 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRL 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,343,721
Number of Sequences: 62578
Number of extensions: 111658
Number of successful extensions: 311
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 37
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)