Query psy9662
Match_columns 110
No_of_seqs 106 out of 523
Neff 6.3
Searched_HMMs 29240
Date Sat Aug 17 01:24:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f66_C Histone H2A.Z; nucleoso 100.0 1.6E-45 5.6E-50 257.1 4.9 106 4-109 22-127 (128)
2 2nqb_C Histone H2A; nucleosome 100.0 1.3E-44 4.6E-49 251.0 6.2 105 4-109 18-123 (123)
3 1id3_C Histone H2A.1; nucleoso 100.0 5.3E-44 1.8E-48 250.3 8.3 105 3-108 19-124 (131)
4 2f8n_G Core histone macro-H2A. 100.0 3E-44 1E-48 248.3 5.6 102 4-106 17-119 (120)
5 1tzy_A Histone H2A-IV; histone 100.0 5.6E-44 1.9E-48 249.6 6.1 104 4-108 20-124 (129)
6 2f8n_K Histone H2A type 1; nuc 100.0 2.5E-43 8.6E-48 251.2 5.4 104 4-108 39-143 (149)
7 2jss_A Chimera of histone H2B. 100.0 1.7E-37 5.7E-42 228.9 5.9 93 4-96 100-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 4.4E-26 1.5E-30 199.3 3.6 95 3-99 98-192 (1049)
9 1jfi_A Transcription regulator 99.9 3.4E-25 1.2E-29 147.9 5.8 81 3-84 5-85 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 8.7E-21 3E-25 126.1 7.0 78 6-84 16-93 (97)
11 4g92_C HAPE; transcription fac 99.8 5.2E-20 1.8E-24 126.5 6.8 76 8-84 40-115 (119)
12 2byk_A Chrac-16; nucleosome sl 99.7 1.9E-17 6.5E-22 116.7 4.7 78 5-83 15-93 (140)
13 1f1e_A Histone fold protein; a 99.6 2.5E-15 8.4E-20 107.4 4.9 72 3-76 76-147 (154)
14 2yfw_B Histone H4, H4; cell cy 99.5 9.4E-15 3.2E-19 97.9 4.7 66 10-77 30-95 (103)
15 1tzy_D Histone H4-VI; histone- 99.5 1E-14 3.5E-19 97.7 4.6 66 10-77 30-95 (103)
16 1ku5_A HPHA, archaeal histon; 99.4 4.3E-13 1.5E-17 83.8 5.3 66 8-75 5-70 (70)
17 1b67_A Protein (histone HMFA); 99.3 1.9E-12 6.6E-17 80.2 5.3 64 9-74 2-65 (68)
18 2byk_B Chrac-14; nucleosome sl 99.2 8.7E-12 3E-16 86.4 3.1 83 1-83 1-83 (128)
19 1n1j_A NF-YB; histone-like PAI 99.1 4.7E-11 1.6E-15 78.2 5.2 70 5-74 4-73 (93)
20 2hue_C Histone H4; mini beta s 99.0 3.9E-10 1.3E-14 72.7 5.8 65 10-76 11-75 (84)
21 1taf_B TFIID TBP associated fa 99.0 4.9E-10 1.7E-14 70.4 5.2 66 7-74 4-69 (70)
22 1id3_B Histone H4; nucleosome 99.0 6.2E-10 2.1E-14 74.4 5.2 65 10-76 29-93 (102)
23 1f1e_A Histone fold protein; a 98.9 8.6E-10 2.9E-14 78.6 5.2 63 9-73 4-67 (154)
24 3b0c_W CENP-W, centromere prot 98.9 7.1E-10 2.4E-14 70.2 4.2 65 9-74 4-68 (76)
25 3b0c_T CENP-T, centromere prot 98.8 3.4E-09 1.2E-13 71.7 2.8 73 7-81 5-77 (111)
26 1taf_A TFIID TBP associated fa 98.7 1.7E-08 6E-13 62.9 5.0 61 13-75 5-65 (68)
27 1jfi_B DR1 protein, transcript 98.6 4.7E-08 1.6E-12 71.1 5.0 76 6-83 12-87 (179)
28 2hue_B Histone H3; mini beta s 98.4 2.6E-07 9E-12 58.8 4.5 65 8-74 2-71 (77)
29 4dra_A Centromere protein S; D 98.4 2.1E-07 7.3E-12 63.2 4.0 74 6-84 27-103 (113)
30 3v9r_A MHF1, uncharacterized p 98.4 2.7E-07 9.4E-12 60.3 4.0 77 5-84 11-88 (90)
31 3b0b_B CENP-S, centromere prot 98.3 7.1E-07 2.4E-11 60.0 4.3 77 6-84 19-95 (107)
32 3nqj_A Histone H3-like centrom 98.2 7.9E-07 2.7E-11 57.2 3.6 67 8-74 2-73 (82)
33 2yfv_A Histone H3-like centrom 98.2 7.8E-07 2.7E-11 59.2 3.2 71 4-74 22-98 (100)
34 1tzy_C Histone H3; histone-fol 98.2 2E-06 6.7E-11 60.1 4.6 69 4-74 57-130 (136)
35 3vh5_A CENP-S; histone fold, c 98.1 1.1E-06 3.9E-11 61.5 2.8 77 5-84 18-95 (140)
36 3nqu_A Histone H3-like centrom 98.1 2.1E-06 7.2E-11 60.2 3.9 71 4-74 56-131 (140)
37 3r45_A Histone H3-like centrom 98.1 1.9E-06 6.4E-11 61.3 3.5 72 4-75 72-148 (156)
38 2l5a_A Histone H3-like centrom 98.1 2.3E-06 8E-11 64.4 3.7 58 15-74 167-224 (235)
39 2nqb_D Histone H2B; nucleosome 98.0 5.8E-06 2E-10 56.8 4.2 61 13-74 37-97 (123)
40 1tzy_B Histone H2B; histone-fo 97.9 7.8E-06 2.7E-10 56.3 4.2 64 9-74 37-100 (126)
41 2ly8_A Budding yeast chaperone 97.9 8.9E-06 3.1E-10 55.7 4.3 49 26-74 62-110 (121)
42 4dra_E Centromere protein X; D 97.6 0.00012 4.2E-09 47.1 5.6 71 1-71 4-75 (84)
43 2jss_A Chimera of histone H2B. 97.4 0.00011 3.6E-09 53.6 3.9 61 13-74 7-67 (192)
44 3b0b_C CENP-X, centromere prot 96.8 0.0027 9.1E-08 40.5 5.1 65 7-71 6-71 (81)
45 1bh9_B TAFII28; histone fold, 96.7 0.0015 5.3E-08 42.2 3.5 64 9-74 16-80 (89)
46 1h3o_B Transcription initiatio 95.2 0.037 1.3E-06 34.7 4.8 65 9-74 5-69 (76)
47 2l5a_A Histone H3-like centrom 93.6 0.046 1.6E-06 41.0 3.0 66 8-73 10-81 (235)
48 1wwi_A Hypothetical protein TT 93.1 0.22 7.6E-06 34.9 5.7 62 9-72 2-63 (148)
49 1r4v_A Hypothetical protein AQ 89.3 0.29 9.8E-06 35.0 3.2 62 9-72 26-87 (171)
50 1k6k_A ATP-dependent CLP prote 89.2 0.26 9.1E-06 32.5 2.8 39 45-83 6-44 (143)
51 3fes_A ATP-dependent CLP endop 82.8 0.35 1.2E-05 32.4 0.8 39 45-83 12-52 (145)
52 1khy_A CLPB protein; alpha hel 82.7 0.53 1.8E-05 31.1 1.7 33 45-77 10-42 (148)
53 2y1q_A CLPC N-domain, negative 81.7 0.52 1.8E-05 31.3 1.3 34 45-78 10-43 (150)
54 3fh2_A Probable ATP-dependent 79.8 0.44 1.5E-05 31.9 0.4 39 45-83 11-51 (146)
55 3zri_A CLPB protein, CLPV; cha 79.2 0.94 3.2E-05 31.7 2.0 33 45-77 29-61 (171)
56 3fes_A ATP-dependent CLP endop 76.0 0.84 2.9E-05 30.4 1.0 39 45-83 86-126 (145)
57 3fh2_A Probable ATP-dependent 74.2 1.2 4E-05 29.7 1.3 38 46-83 87-126 (146)
58 1k6k_A ATP-dependent CLP prote 72.4 1.7 5.8E-05 28.4 1.8 34 45-78 84-117 (143)
59 3v9r_B MHF2, uncharacterized p 68.7 14 0.00049 23.5 5.4 49 10-58 2-51 (88)
60 1khy_A CLPB protein; alpha hel 68.0 3 0.0001 27.3 2.3 39 45-83 87-126 (148)
61 3zri_A CLPB protein, CLPV; cha 65.5 2.3 8E-05 29.6 1.4 32 46-77 104-136 (171)
62 1r6b_X CLPA protein; AAA+, N-t 63.5 4.8 0.00016 33.4 3.1 39 45-83 6-44 (758)
63 2y1q_A CLPC N-domain, negative 61.6 3.8 0.00013 26.9 1.8 33 45-77 84-116 (150)
64 2vxz_A Pyrsv_GP04; viral prote 50.0 15 0.0005 25.9 3.3 45 39-84 71-115 (165)
65 3uk6_A RUVB-like 2; hexameric 46.6 28 0.00096 25.5 4.7 47 28-74 278-328 (368)
66 3pxg_A Negative regulator of g 44.1 11 0.00038 29.7 2.1 39 45-83 10-50 (468)
67 3pxi_A Negative regulator of g 39.9 8.7 0.0003 32.0 0.9 39 45-83 10-50 (758)
68 3pxg_A Negative regulator of g 39.2 7.5 0.00026 30.7 0.5 33 46-78 85-117 (468)
69 1qvr_A CLPB protein; coiled co 37.7 15 0.00051 31.2 2.1 34 45-78 10-43 (854)
70 1g8p_A Magnesium-chelatase 38 37.1 33 0.0011 24.8 3.7 46 28-73 267-319 (350)
71 3kw6_A 26S protease regulatory 35.9 20 0.00067 21.0 1.9 35 36-74 37-71 (78)
72 1r6b_X CLPA protein; AAA+, N-t 32.5 18 0.00062 29.9 1.7 34 45-78 84-117 (758)
73 2v1u_A Cell division control p 32.0 47 0.0016 24.1 3.8 48 27-74 221-274 (387)
74 3pxi_A Negative regulator of g 30.8 12 0.00042 31.1 0.5 34 45-78 84-117 (758)
75 1f6v_A DNA transposition prote 30.1 8.2 0.00028 24.7 -0.6 28 46-74 50-77 (91)
76 3bos_A Putative DNA replicatio 28.6 61 0.0021 21.6 3.7 47 28-75 193-242 (242)
77 2dzn_B 26S protease regulatory 28.1 33 0.0011 20.3 2.0 44 27-74 23-66 (82)
78 1woz_A 177AA long conserved hy 26.9 24 0.00083 24.8 1.4 55 37-91 50-108 (177)
79 2qby_A CDC6 homolog 1, cell di 26.3 58 0.002 23.5 3.4 48 28-75 218-271 (386)
80 3f8t_A Predicted ATPase involv 23.4 77 0.0026 26.0 3.9 65 10-74 394-481 (506)
81 1lv7_A FTSH; alpha/beta domain 22.9 35 0.0012 23.8 1.6 27 48-74 224-250 (257)
82 1ixz_A ATP-dependent metallopr 22.7 42 0.0015 23.3 2.0 26 48-73 228-253 (254)
83 1iy2_A ATP-dependent metallopr 22.2 43 0.0015 23.8 2.0 26 48-73 252-277 (278)
84 3h4m_A Proteasome-activating n 20.1 43 0.0015 23.6 1.6 28 47-74 229-256 (285)
No 1
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=1.6e-45 Score=257.10 Aligned_cols=106 Identities=92% Similarity=1.253 Sum_probs=94.7
Q ss_pred ccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
.||||||||+||+|||++++++.+||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+||++||
T Consensus 22 ~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll 101 (128)
T 1f66_C 22 QRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 101 (128)
T ss_dssp HHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHC
T ss_pred ccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhh
Confidence 58999999999999999998644699999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcccccccccccCCcCCCCC
Q psy9662 84 KATIAGGGVIPHIHKSLIGKKGTQKP 109 (110)
Q Consensus 84 ~~~i~~~g~~p~~~~~~~~~k~~~~~ 109 (110)
+.||++|||+|+||++|+++|+++|.
T Consensus 102 ~~tia~ggv~P~i~~~l~~k~~~~~~ 127 (128)
T 1f66_C 102 KATIAGGGVIPHIHKSLIGKKGQQKT 127 (128)
T ss_dssp CSEETTCCCCCCCCGGGC--------
T ss_pred cceecCCccCCCCCHHhcCcccccCC
Confidence 98999999999999999999988764
No 2
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=1.3e-44 Score=251.01 Aligned_cols=105 Identities=58% Similarity=0.846 Sum_probs=96.9
Q ss_pred ccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
.||||||||+||+|||+++.+ ++||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+||++||
T Consensus 18 ~ragL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll 96 (123)
T 2nqb_C 18 NRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 96 (123)
T ss_dssp HHHTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHT
T ss_pred ccCCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHh
Confidence 589999999999999999876 4899999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhcCCcccccccccccCCcCCCCC
Q psy9662 84 K-ATIAGGGVIPHIHKSLIGKKGTQKP 109 (110)
Q Consensus 84 ~-~~i~~~g~~p~~~~~~~~~k~~~~~ 109 (110)
+ +||++|||+|+||++++++|+++|+
T Consensus 97 ~~vtia~ggvlp~i~~~l~~k~~~~~~ 123 (123)
T 2nqb_C 97 SGVTIAQGGVLPNIQAVLLPKKTEKKA 123 (123)
T ss_dssp TTEEETTCCCCCCCCGGGSSCC-----
T ss_pred cCceeCCCCcCCCccHHHcCcccccCC
Confidence 5 8999999999999999999998764
No 3
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=5.3e-44 Score=250.30 Aligned_cols=105 Identities=53% Similarity=0.850 Sum_probs=100.3
Q ss_pred cccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhh
Q psy9662 3 EWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 82 (110)
Q Consensus 3 ~~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L 82 (110)
+.||||||||+||+|||+++.+ ++||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+||+||++|
T Consensus 19 S~ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~L 97 (131)
T 1id3_C 19 SAKAGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKL 97 (131)
T ss_dssp TGGGTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHH
T ss_pred cccCCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHH
Confidence 4689999999999999999876 489999999999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhcCCcccccccccccCCcCCCC
Q psy9662 83 IK-ATIAGGGVIPHIHKSLIGKKGTQK 108 (110)
Q Consensus 83 ~~-~~i~~~g~~p~~~~~~~~~k~~~~ 108 (110)
|+ +||++|||+|+||++++++|+++|
T Consensus 98 l~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (131)
T 1id3_C 98 LGNVTIAQGGVLPNIHQNLLPKKSAKA 124 (131)
T ss_dssp TTTEEETTCCCCCCCCGGGSCCSCCSC
T ss_pred hcCceecCCccCCCccHHHcCcccccc
Confidence 95 899999999999999999998765
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=3e-44 Score=248.32 Aligned_cols=102 Identities=53% Similarity=0.785 Sum_probs=97.0
Q ss_pred ccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
.||||||||+||+|||+++++ ++||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+||+||++||
T Consensus 17 ~ragLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll 95 (120)
T 2f8n_G 17 AKAGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLL 95 (120)
T ss_dssp HHHTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHT
T ss_pred cccCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHh
Confidence 589999999999999999986 5899999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhcCCcccccccccccCCcCC
Q psy9662 84 K-ATIAGGGVIPHIHKSLIGKKGT 106 (110)
Q Consensus 84 ~-~~i~~~g~~p~~~~~~~~~k~~ 106 (110)
+ +||++|||+|+||++++++|++
T Consensus 96 ~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 96 KGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp TTEEETTCCCCCCCCGGGSCCC--
T ss_pred CCceECCCCcCCCcCHHHcCCccC
Confidence 6 8999999999999999999875
No 5
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=5.6e-44 Score=249.60 Aligned_cols=104 Identities=58% Similarity=0.844 Sum_probs=95.9
Q ss_pred ccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
.|+||||||+||+|||+++.+ ++||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+||++||
T Consensus 20 ~ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~ 98 (129)
T 1tzy_A 20 SRAGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 98 (129)
T ss_dssp HHHTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHT
T ss_pred ccCceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHh
Confidence 589999999999999999876 4899999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhcCCcccccccccccCCcCCCC
Q psy9662 84 K-ATIAGGGVIPHIHKSLIGKKGTQK 108 (110)
Q Consensus 84 ~-~~i~~~g~~p~~~~~~~~~k~~~~ 108 (110)
+ +||++|||+|+||++++++|+++|
T Consensus 99 ~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 99 GKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp TTEEETTCCCCCCCCGGGSCC-----
T ss_pred CCCeecCCCcCCCCCHHHcCcccccc
Confidence 5 899999999999999999998764
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=2.5e-43 Score=251.19 Aligned_cols=104 Identities=58% Similarity=0.845 Sum_probs=96.0
Q ss_pred ccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
.||||||||+||+|||+++.+ ++||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+||+||++||
T Consensus 39 ~ragLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll 117 (149)
T 2f8n_K 39 SRAGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 117 (149)
T ss_dssp HHHTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHT
T ss_pred ccCCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHh
Confidence 489999999999999999876 4899999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhcCCcccccccccccCCcCCCC
Q psy9662 84 K-ATIAGGGVIPHIHKSLIGKKGTQK 108 (110)
Q Consensus 84 ~-~~i~~~g~~p~~~~~~~~~k~~~~ 108 (110)
+ +||++|||+|+||++++++|+++|
T Consensus 118 ~~vtIa~gGVlP~i~~~l~~k~~~~~ 143 (149)
T 2f8n_K 118 GRVTIAQGGVLPNIQAVLLPKKTESH 143 (149)
T ss_dssp TTEEETTCCCCCCCCGGGSCC-----
T ss_pred cCceEcCCCCCCCccHHHcCcccccc
Confidence 5 899999999999999999998755
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=1.7e-37 Score=228.88 Aligned_cols=93 Identities=73% Similarity=1.064 Sum_probs=88.9
Q ss_pred ccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
.|+||||||+||+|+|+++.+..+||+++|++||+||||||++||+|+|+|.|+++++++|+|+||++||+||+||++||
T Consensus 100 ~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~ 179 (192)
T 2jss_A 100 ARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI 179 (192)
T ss_dssp HHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHH
T ss_pred ccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHH
Confidence 48999999999999999986543699999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcccccc
Q psy9662 84 KATIAGGGVIPHI 96 (110)
Q Consensus 84 ~~~i~~~g~~p~~ 96 (110)
+.||++|||+|+|
T Consensus 180 ~~ti~~ggv~p~i 192 (192)
T 2jss_A 180 RATIASGGVLPHI 192 (192)
T ss_dssp CSCCTTTCCSSCC
T ss_pred hhhhcCCCcCCCC
Confidence 9999999999986
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.92 E-value=4.4e-26 Score=199.32 Aligned_cols=95 Identities=22% Similarity=0.435 Sum_probs=76.6
Q ss_pred cccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhh
Q psy9662 3 EWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 82 (110)
Q Consensus 3 ~~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L 82 (110)
++||||||||+||+|+| ++.| +.||+++|||||+||||||++||||+|||+|+++++++|+|+|+++|++||+||..|
T Consensus 98 ~~~~~l~~pv~~~~~~l-~~~~-~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l 175 (1049)
T 3ksy_A 98 KRRNPLSLPVEKIHPLL-KEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDM 175 (1049)
T ss_dssp CCSSSCSSCHHHHHHHH-HHHH-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHH
T ss_pred cccCCccccHHHHHHHh-hccc-ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHH
Confidence 57999999999999999 6665 589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCccccccccc
Q psy9662 83 IKATIAGGGVIPHIHKS 99 (110)
Q Consensus 83 ~~~~i~~~g~~p~~~~~ 99 (110)
|+....++|++|.....
T Consensus 176 ~~~dee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 176 FHQDVEDINILSLTDEE 192 (1049)
T ss_dssp CC---------------
T ss_pred HhhccccccCCCCcccc
Confidence 97555677888876554
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.91 E-value=3.4e-25 Score=147.90 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=61.3
Q ss_pred cccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhh
Q psy9662 3 EWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 82 (110)
Q Consensus 3 ~~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L 82 (110)
++++|++||++||+|+||.+.+ ..|||++|++|+++++|||+.|++++|++.|+++++++|+|+||..||++|++|++|
T Consensus 5 ~kk~~~~fPvaRIkrimK~~~~-~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 5 KKKYNARFPPARIKKIMQTDEE-IGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp -----CCCCHHHHHHHHTTSTT-CCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred ccccCCCCChHHHHHHHHcCcc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 5789999999999999999886 489999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q psy9662 83 IK 84 (110)
Q Consensus 83 ~~ 84 (110)
+.
T Consensus 84 ~d 85 (98)
T 1jfi_A 84 KA 85 (98)
T ss_dssp --
T ss_pred Hh
Confidence 85
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.83 E-value=8.7e-21 Score=126.14 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=71.3
Q ss_pred CCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhhh
Q psy9662 6 QQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 84 (110)
Q Consensus 6 agl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~~ 84 (110)
.+++||++||+|+||.+.+ ..||+++|++++++++|||+.++++.|++.|.++++++|+++||..||++|++|++|..
T Consensus 16 ~~~~lP~arIkrImK~~~~-~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDED-VKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp ----CCHHHHHHHHTTSTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred CCCcCCHHHHHHHHccCcc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 4689999999999999975 47999999999999999999999999999999999999999999999999999999984
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.80 E-value=5.2e-20 Score=126.55 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=71.9
Q ss_pred CccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhhh
Q psy9662 8 PNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 84 (110)
Q Consensus 8 l~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~~ 84 (110)
.+||++||+|+||.+.+ ..+|+++|++|+++++|||+.+|++.|++.|+.+++++|+|+||..||++|++|++|-.
T Consensus 40 ~~lPvaRIkrImK~d~~-~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~D 115 (119)
T 4g92_C 40 HQLPLARIKKVMKADPE-VKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLID 115 (119)
T ss_dssp CSSCHHHHHHHHHTSTT-CCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred CCCCHHHHHHHHhhCCc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHHH
Confidence 46999999999998875 48999999999999999999999999999999999999999999999999999998864
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.68 E-value=1.9e-17 Score=116.66 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=61.6
Q ss_pred cCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCceeccccccccccCchhhhhhh
Q psy9662 5 EQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNAS-KDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 5 ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A-~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
+.+++||++||+|+||.+.+ ..+|+.+|+++++.++|+|+.+|++.|++.| ...++++|+++||..||.++++|.+|.
T Consensus 15 ~~~~~LPlaRIKrIMK~dpd-v~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSSMD-TGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSSSS-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcCcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 57889999999999999875 4799999999999999999999999999999 999999999999999999999999998
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.56 E-value=2.5e-15 Score=107.36 Aligned_cols=72 Identities=19% Similarity=0.099 Sum_probs=67.6
Q ss_pred cccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCc
Q psy9662 3 EWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 76 (110)
Q Consensus 3 ~~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD 76 (110)
..+.++.||++.|.|+||+.+ ..|||++|..+|+.+||+++.+|.+.|.++|++.+||+|+++||.+|++++
T Consensus 76 ~d~~~l~lP~a~V~Ri~k~~g--~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILKRAG--IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TTCCSCCCCHHHHHHHHHHTT--CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccccccCCccHHHHHHHHcC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 458899999999999999985 479999999999999999999999999999999999999999999998754
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.51 E-value=9.4e-15 Score=97.94 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=62.9
Q ss_pred cchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCch
Q psy9662 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 77 (110)
Q Consensus 10 fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~ 77 (110)
||++.|.|+++..+. .||+.++..+|+.+|||++.+|++.|.++|+|+++++|+|+||.+|+++..
T Consensus 30 ip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 30 ITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 999999999999874 799999999999999999999999999999999999999999999998654
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.51 E-value=1e-14 Score=97.72 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=62.8
Q ss_pred cchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCch
Q psy9662 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 77 (110)
Q Consensus 10 fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~ 77 (110)
||++.|.|+++..+. .||+.++..+|+.+|||++.+|++.|.++|+|+++++|+|+||.+|+++..
T Consensus 30 ip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 30 ITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp SCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 999999999999874 799999999999999999999999999999999999999999999998653
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.39 E-value=4.3e-13 Score=83.84 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=62.3
Q ss_pred CccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccC
Q psy9662 8 PNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 75 (110)
Q Consensus 8 l~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~n 75 (110)
..||.+.|.|++++.+ ..|+++++...|..++|+++.+|++.|...|.|.||++|+++||.+|+++
T Consensus 5 ~~lp~a~v~Rl~r~~g--~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKAG--AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHTT--CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHcC--cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 3689999999999986 37999999999999999999999999999999999999999999999875
No 17
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.32 E-value=1.9e-12 Score=80.21 Aligned_cols=64 Identities=28% Similarity=0.349 Sum_probs=60.7
Q ss_pred ccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.||.++|.|+||+.+ ..|++++|...|..++|+++.+|.+.|...|.+.+|++|+|+||+.|++
T Consensus 2 ~lP~a~v~Ri~k~~~--~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNAG--AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHTT--CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcCC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 589999999999984 3799999999999999999999999999999999999999999999985
No 18
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.18 E-value=8.7e-12 Score=86.43 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=65.0
Q ss_pred CccccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhh
Q psy9662 1 MAEWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 80 (110)
Q Consensus 1 ~~~~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~ 80 (110)
|+++-..+.||+++|.|+|++......+|+.+|...|+.+.|.|+.+|...|...|.+.+|++|+++||..|+...+-++
T Consensus 1 m~e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~ 80 (128)
T 2byk_B 1 MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFES 80 (128)
T ss_dssp ----------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTT
T ss_pred CCCccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHH
Confidence 89999999999999999999643234799999999999999999999999999999999999999999999998776555
Q ss_pred hhh
Q psy9662 81 SLI 83 (110)
Q Consensus 81 ~L~ 83 (110)
++-
T Consensus 81 fl~ 83 (128)
T 2byk_B 81 FVP 83 (128)
T ss_dssp THH
T ss_pred HHH
Confidence 553
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.14 E-value=4.7e-11 Score=78.20 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=63.3
Q ss_pred cCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 5 EQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 5 ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
...+.||.++|.|+||+......||+++|...|+.+.|.++.+|.+.|...|.+.+|++|+++||..|++
T Consensus 4 ~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 4 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp ---CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3568899999999999985334799999999999999999999999999999999999999999999996
No 20
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.03 E-value=3.9e-10 Score=72.74 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=61.9
Q ss_pred cchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCc
Q psy9662 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 76 (110)
Q Consensus 10 fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD 76 (110)
+|.+.|.|+++..+. .|||.++...|..++|+++.+|+..|...|+|.+|++|+++||..|++..
T Consensus 11 ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 11 ITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp SCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 899999999999873 79999999999999999999999999999999999999999999999865
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.00 E-value=4.9e-10 Score=70.38 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=62.0
Q ss_pred CCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 7 QPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 7 gl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.-.||++.|+++.+.-| ..++++++...|+.-+||-+.||++.|.+.++|+||++++++||+.|++
T Consensus 4 ~s~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIG--VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 34699999999999988 4799999999999999999999999999999999999999999999875
No 22
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.98 E-value=6.2e-10 Score=74.36 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=61.6
Q ss_pred cchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCc
Q psy9662 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 76 (110)
Q Consensus 10 fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD 76 (110)
+|.+.|.|+++..+. .|||.++...|..++||++.+|+..|..+|+|.+|++|+++||..|++..
T Consensus 29 ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 29 ITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp SCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 899999999999873 79999999999999999999999999999999999999999999998744
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.94 E-value=8.6e-10 Score=78.60 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=60.3
Q ss_pred ccchhhhhhhhhcC-CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccc
Q psy9662 9 NFPVGRIHRHLKNR-TTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 73 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~-~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai 73 (110)
.+|.+.|.|+||+. + . .|||.+|...|+.++|.++.+|...|.+.|.+.|||+|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg-~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIG-E-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTST-T-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCC-c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 48999999999998 5 3 89999999999999999999999999999999999999999999888
No 24
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.94 E-value=7.1e-10 Score=70.21 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=59.9
Q ss_pred ccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.||.+.|.|+|++.-. ..+||.+|...+..+.|.++.+|...|...|+++++++|+++||..|++
T Consensus 4 ~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 5899999999996532 3799999999999999999999999999999999999999999999874
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.75 E-value=3.4e-09 Score=71.69 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=62.9
Q ss_pred CCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhh
Q psy9662 7 QPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDS 81 (110)
Q Consensus 7 gl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~ 81 (110)
.+.+|.+-|.|++++.+ ..|||.++...|..+++.++.+|..-|..+|+|.||++|+++||.+|++.+..+.+
T Consensus 5 d~~lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~ 77 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYV--KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTD 77 (111)
T ss_dssp -----CHHHHHHHHHHH--CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBT
T ss_pred CCCCCHHHHHHHHHHCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccc
Confidence 35689999999999986 37999999999999999999999999999999999999999999999997665543
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.72 E-value=1.7e-08 Score=62.92 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=57.3
Q ss_pred hhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccC
Q psy9662 13 GRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 75 (110)
Q Consensus 13 ~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~n 75 (110)
-.|+|+|++.| +.|++..++.-|...+|-.+.+|+..|..+|.|.|+++|+.+||++||+.
T Consensus 5 ~~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 46899999988 48999999999999999999999999999999999999999999999864
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.59 E-value=4.7e-08 Score=71.11 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 6 QQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 6 agl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
..+.||++.|.|+|++... ..||+.+|...|..+.+-++..|...|...|.+.+|++|+++||..|+. +-+|..+.
T Consensus 12 eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred hhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 3467999999999999864 4799999999999999999999999999999999999999999999997 44554443
No 28
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.42 E-value=2.6e-07 Score=58.85 Aligned_cols=65 Identities=20% Similarity=0.145 Sum_probs=58.9
Q ss_pred CccchhhhhhhhhcC-----CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 8 PNFPVGRIHRHLKNR-----TTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 8 l~fPV~ri~r~Lk~~-----~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
|.+|..++.|+.++- + ..|++++|...|.-+.|.+..+++|-+...|.|.++.+|+|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~--~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCS--SCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 567888888888876 4 3799999999999999999999999999999999999999999999865
No 29
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.40 E-value=2.1e-07 Score=63.16 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=62.7
Q ss_pred CCCccchhhhhhhhhcCCCccc---ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhh
Q psy9662 6 QQPNFPVGRIHRHLKNRTTSHG---RVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 82 (110)
Q Consensus 6 agl~fPV~ri~r~Lk~~~~~~~---Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L 82 (110)
+.|.+.|+||- ++.+ .. .+|.++...|+..++..+.+|.+-+...|++.||++|+++||.++++.++.|..+
T Consensus 27 aal~y~V~rIv---ke~g--aer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~ 101 (113)
T 4dra_A 27 AAVHYTVGCLC---EEVA--LDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKY 101 (113)
T ss_dssp HHHHHHHHHHH---HHHH--HHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHH---HHHH--HHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHH
Confidence 34556666554 4433 13 4999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q psy9662 83 IK 84 (110)
Q Consensus 83 ~~ 84 (110)
++
T Consensus 102 l~ 103 (113)
T 4dra_A 102 IT 103 (113)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 30
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=2.7e-07 Score=60.33 Aligned_cols=77 Identities=9% Similarity=-0.019 Sum_probs=65.1
Q ss_pred cCCCccchhhhhh-hhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 5 EQQPNFPVGRIHR-HLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 5 ragl~fPV~ri~r-~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
|+.|++-|++|-. .+++.+ ..++.++...|+..++..+.++.+-+...|+|.||++|+++||.++++.++.|..++
T Consensus 11 Kaal~~~V~ki~~e~~~~~g---~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l 87 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSED---IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERV 87 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC---ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHh
Confidence 3456677777754 344333 479999999999999999999999999999999999999999999999999998876
Q ss_pred h
Q psy9662 84 K 84 (110)
Q Consensus 84 ~ 84 (110)
.
T Consensus 88 ~ 88 (90)
T 3v9r_A 88 T 88 (90)
T ss_dssp C
T ss_pred h
Confidence 3
No 31
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.28 E-value=7.1e-07 Score=60.05 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=63.3
Q ss_pred CCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhhh
Q psy9662 6 QQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 84 (110)
Q Consensus 6 agl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~~ 84 (110)
+-+++-|++|-+---... ..|++.++...|+..++.++.+|..-+...|+|.||++|+++||.++++.++.|...++
T Consensus 19 aal~~~V~rI~~~~g~~~--~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 19 AAVHYTTGCLCQDVAEDK--GVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 345566666554222111 15999999999999999999999999999999999999999999999999999988874
No 32
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.24 E-value=7.9e-07 Score=57.24 Aligned_cols=67 Identities=16% Similarity=-0.002 Sum_probs=58.4
Q ss_pred CccchhhhhhhhhcCCC-----cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 8 PNFPVGRIHRHLKNRTT-----SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 8 l~fPV~ri~r~Lk~~~~-----~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
|-+|..++.|+.++-.. ...|++++|...|.-+.|.+.-+++|-|...|.|.++.+|.|+||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 45788888888887541 13699999999999999999999999999999999999999999998864
No 33
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.21 E-value=7.8e-07 Score=59.20 Aligned_cols=71 Identities=20% Similarity=0.055 Sum_probs=58.1
Q ss_pred ccCCCccchhhhhhhhhcCCCc------ccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTTS------HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~~------~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
+..+|.+|..++.|+.++-... ..|++++|...|.-+.|.+.-+++|-+...|.|.++.+|.|+||++|.+
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 4567889999999998875410 3699999999999999999999999999999999999999999999864
No 34
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.16 E-value=2e-06 Score=60.09 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=62.8
Q ss_pred ccCCCccchhhhhhhhhcC-----CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 4 WEQQPNFPVGRIHRHLKNR-----TTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~-----~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
+..+|.+|...+.|+.++- + ..|++++|...|.-+.|.++.+++|-+...|.|.++.+|.|+||++|.+
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~--~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCT--TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhhccchHHHHHHHHHHHhhh--hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 3567889999999999886 4 2799999999999999999999999999999999999999999999864
No 35
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.12 E-value=1.1e-06 Score=61.52 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=65.4
Q ss_pred cCCCccchhhhhhhh-hcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 5 EQQPNFPVGRIHRHL-KNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 5 ragl~fPV~ri~r~L-k~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
++-|++-|++|-.=. .+.+ ..++.++...|+.+++..+.+|..-+...|+|.||++|+++||.++++.++.|..++
T Consensus 18 KaAl~y~VgkIvee~~~~~~---~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L 94 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKG---VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYI 94 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHH
Confidence 345667777775532 2222 479999999999999999999999999999999999999999999999999999998
Q ss_pred h
Q psy9662 84 K 84 (110)
Q Consensus 84 ~ 84 (110)
+
T Consensus 95 ~ 95 (140)
T 3vh5_A 95 T 95 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 36
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.11 E-value=2.1e-06 Score=60.18 Aligned_cols=71 Identities=15% Similarity=-0.012 Sum_probs=61.3
Q ss_pred ccCCCccchhhhhhhhhcCCC-----cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTT-----SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~-----~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
+..+|.+|...+.|+.++-.. ...|++++|...|.-+.|.++.+++|-|...|.|.++.+|+|+||++|.+
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 457888999999999987541 13699999999999999999999999999999999999999999999864
No 37
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.10 E-value=1.9e-06 Score=61.35 Aligned_cols=72 Identities=15% Similarity=-0.033 Sum_probs=61.8
Q ss_pred ccCCCccchhhhhhhhhcCCC-----cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccC
Q psy9662 4 WEQQPNFPVGRIHRHLKNRTT-----SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 75 (110)
Q Consensus 4 ~ragl~fPV~ri~r~Lk~~~~-----~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~n 75 (110)
+..+|.+|...|.|+.++-.. ...|++++|...|.-+.|.++.+++|-|...|.+.++.+|+|+||++|.+-
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 457889999999999987541 136999999999999999999999999999999999999999999998753
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.3e-06 Score=64.40 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=54.3
Q ss_pred hhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 15 IHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 15 i~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
+.|+.+.+| ++|||.++...+..+||.+..+|+.-|..+|.+.++|+|+++||..|++
T Consensus 167 ~~RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALK 224 (235)
T 2l5a_A 167 DEEDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 224 (235)
T ss_dssp CCTTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred HHHHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 458999887 4899999999999999999999999999999999999999999999875
No 39
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.99 E-value=5.8e-06 Score=56.78 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=56.1
Q ss_pred hhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 13 GRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 13 ~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
..|+|+|++-... ..||+.|...|...++.++..|...|.+.|+.+++++|++++|+.|++
T Consensus 37 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 37 IYIYTVLKQVHPD-TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 4789999986643 589999999999999999999999999999999999999999999986
No 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.95 E-value=7.8e-06 Score=56.33 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=57.8
Q ss_pred ccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.|.+ .|+|+|++-... ..||+.|...|...++.++..|...|.+.|+.+++++|++++|+.|++
T Consensus 37 sy~~-YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 37 SYSI-YVYKVLKQVHPD-TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCHH-HHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cHHH-HHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4554 799999986643 589999999999999999999999999999999999999999999986
No 41
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=8.9e-06 Score=55.74 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=47.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 26 HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 26 ~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.+|||+++-..+..+||.+..+|+.-|..++.|.+||+|+.+||..|++
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998875
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.62 E-value=0.00012 Score=47.14 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=56.5
Q ss_pred CccccCCCccchhhhhhhhhcCCC-cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccc
Q psy9662 1 MAEWEQQPNFPVGRIHRHLKNRTT-SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQL 71 (110)
Q Consensus 1 ~~~~ragl~fPV~ri~r~Lk~~~~-~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~ 71 (110)
|.++.++..||-.-|.|+|+.... ..-||+.+|...++..|+.|+.|.+-+|...|...+...|..+|++.
T Consensus 4 ~~~~~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 4 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp -------CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 788899999999999999996442 22699999999999999999999999999999887778899998875
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.44 E-value=0.00011 Score=53.62 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=55.7
Q ss_pred hhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 13 GRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 13 ~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
..|+|.|++.... ..|++.|..+|...+..++..|...|.+.++.+++++|+++||+.|++
T Consensus 7 ~yi~kvLkqv~p~-~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPD-TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3589999987643 689999999999999999999999999999999999999999999986
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.76 E-value=0.0027 Score=40.48 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=56.5
Q ss_pred CCccchhhhhhhhhcCCC-cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccc
Q psy9662 7 QPNFPVGRIHRHLKNRTT-SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQL 71 (110)
Q Consensus 7 gl~fPV~ri~r~Lk~~~~-~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~ 71 (110)
+..||-.-|.|+|+..-. ..-||+++|...++..|+.++.|-+.+|...|+..+...|..+|++.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 567999999999997432 12699999999999999999999999999999888888999999985
No 45
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.67 E-value=0.0015 Score=42.25 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=54.4
Q ss_pred ccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceecccccccccc
Q psy9662 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL-KVKRITPRHLQLAIR 74 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~-~~k~I~p~hI~~Ai~ 74 (110)
.||-..|+|+++.-. ...++.+..+.|+++-=.++.||.|.|....... ....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 578888999998754 2689999999999999999999999999977664 456999999998864
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.16 E-value=0.037 Score=34.74 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=57.2
Q ss_pred ccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.++-.++..++++-.. ...+..++--.|..+.+-|+..+++.|+..|++.+..++.++||++.+.
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 4677888888887543 3799999999999999999999999999999999999999999987654
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.046 Score=41.03 Aligned_cols=66 Identities=21% Similarity=0.056 Sum_probs=52.0
Q ss_pred CccchhhhhhhhhcCC----C--cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccc
Q psy9662 8 PNFPVGRIHRHLKNRT----T--SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 73 (110)
Q Consensus 8 l~fPV~ri~r~Lk~~~----~--~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai 73 (110)
|.+|-.++.|+.++-. . ...|..++|...|--+-|.+.-.++|-+.--|.|.++-+|.|.||++|-
T Consensus 10 ~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp -CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred ccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 4555555666554421 1 0259999999999999999999999999999999999999999999983
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=93.05 E-value=0.22 Score=34.87 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=54.6
Q ss_pred ccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccc
Q psy9662 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 72 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~A 72 (110)
.+++.+++|+++.... --|..+-.--+..++|-=..+++..|...|+.|||..|.|.|+-.+
T Consensus 2 vm~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPIT 63 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIA 63 (148)
T ss_dssp CSCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCC
T ss_pred cCCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCcc
Confidence 4789999999998652 5788888888899999999999999999999999999999998653
No 49
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=89.33 E-value=0.29 Score=35.04 Aligned_cols=62 Identities=5% Similarity=-0.059 Sum_probs=55.1
Q ss_pred ccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccc
Q psy9662 9 NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 72 (110)
Q Consensus 9 ~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~A 72 (110)
.+++.+++|+++.... .-|..+-.--+..++|-=+.++|..|...|+.|||-.|.|.|+-++
T Consensus 26 vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPIT 87 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNIT 87 (171)
T ss_dssp CTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCC
T ss_pred cCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCcc
Confidence 6799999999998652 6788888888899999999999999999999999999999998654
No 50
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=89.18 E-value=0.26 Score=32.48 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
+.++++.|.+.|...+...|+|+|+-+++-.+++...++
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL 44 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL 44 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHH
Confidence 468899999999999999999999999998877655554
No 51
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=82.75 E-value=0.35 Score=32.38 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCch--hhhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~--EL~~L~ 83 (110)
+.++++.|.+.|...+...|+|+|+-+|+-.++ ....++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 52 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVL 52 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHH
Confidence 368899999999999999999999999987654 344444
No 52
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=82.69 E-value=0.53 Score=31.07 Aligned_cols=33 Identities=24% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCch
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 77 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~ 77 (110)
+.++++.|.+.|...+...|+|+|+-+|+-.++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 367899999999999999999999999986655
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=81.67 E-value=0.52 Score=31.26 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 78 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~E 78 (110)
+.++++.|.+.|...+...|+|+|+-+++-.+++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~ 43 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGE 43 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 3678899999999999999999999999865543
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=79.80 E-value=0.44 Score=31.87 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCc--hhhhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD--~EL~~L~ 83 (110)
+.++++.|.+.|+..+...|+|+|+-+|+-.| .....++
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 51 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKAL 51 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHH
Confidence 36789999999999999999999999998754 3344444
No 55
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=79.24 E-value=0.94 Score=31.66 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCch
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 77 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~ 77 (110)
+.++++.|.+.|...+...|.|+|+-+|+-.++
T Consensus 29 a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 29 SKLALEQAASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 467899999999999999999999999997664
No 56
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=75.96 E-value=0.84 Score=30.44 Aligned_cols=39 Identities=31% Similarity=0.506 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchh--hhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~E--L~~L~ 83 (110)
+..+|+.|...|+..+...|+++|+-+|+-.|++ ...++
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL 126 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKIL 126 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHH
Confidence 4678899999999999999999999999975543 44555
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=74.23 E-value=1.2 Score=29.72 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCCceeccccccccccCch--hhhhhh
Q psy9662 46 AEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLI 83 (110)
Q Consensus 46 ~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~--EL~~L~ 83 (110)
.++|+.|...|+..+...|+++|+-+|+-.|+ ....++
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL 126 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVL 126 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHH
Confidence 57888999999999999999999999997544 344555
No 58
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=72.42 E-value=1.7 Score=28.43 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 78 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~E 78 (110)
+..+|+.|..+|+..+...|+++|+-+|+-.+++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~ 117 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcC
Confidence 3578999999999999999999999999987654
No 59
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=68.75 E-value=14 Score=23.49 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=38.7
Q ss_pred cchhhhhhhhhcCCCc-ccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9662 10 FPVGRIHRHLKNRTTS-HGRVGATAAVYSAAILEYLTAEVLELAGNASKD 58 (110)
Q Consensus 10 fPV~ri~r~Lk~~~~~-~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~ 58 (110)
+|..-+.|+|+..... .-||+.+|...++..++-|+.|-+-+|......
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777888888854311 259999999999999999999999999765443
No 60
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=68.01 E-value=3 Score=27.27 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccC-chhhhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRG-DEELDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~n-D~EL~~L~ 83 (110)
+..+++.|...|+..+...|+++|+-+|+-. |.....++
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L 126 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADIL 126 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHH
Confidence 4678899999999999999999999999984 33333444
No 61
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=65.53 E-value=2.3 Score=29.59 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHh-hcCCceeccccccccccCch
Q psy9662 46 AEVLELAGNASK-DLKVKRITPRHLQLAIRGDE 77 (110)
Q Consensus 46 ~EIlelA~~~A~-~~~~k~I~p~hI~~Ai~nD~ 77 (110)
.++|+.|..+|+ ..|...|+++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 578999999999 99999999999999998777
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.51 E-value=4.8 Score=33.43 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~ 83 (110)
+.++|+.|.+.|+..+...|+|+|+-+++=.|++...++
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL 44 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL 44 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHH
Confidence 467899999999999999999999999998887766555
No 63
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=61.57 E-value=3.8 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCch
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 77 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~ 77 (110)
+..+++.|...|+..+...|+++|+-+|+-.++
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 467889999999999999999999999997544
No 64
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=49.99 E-value=15 Score=25.93 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhhh
Q psy9662 39 AILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 84 (110)
Q Consensus 39 avLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~~ 84 (110)
+.+. .+.++++.-...-+..|.+-|+|.++..-|..|.|-..+|.
T Consensus 71 ~y~~-kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a 115 (165)
T 2vxz_A 71 QYRQ-LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFS 115 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHH
Confidence 3344 67777777777777889999999999999999999999995
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=46.60 E-value=28 Score=25.51 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=35.1
Q ss_pred ccCchhHHHHHHHHH-H---HHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 28 RVGATAAVYSAAILE-Y---LTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 28 Rvs~~A~vyLaavLE-y---l~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.++.++..+|+..-+ . -+..+++.|...|...++..|+.+|++.++.
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 577777777776665 2 2345677777777777899999999998875
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.08 E-value=11 Score=29.69 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCc--hhhhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD--~EL~~L~ 83 (110)
+.++++.|...|+..+...|+|+|+-+++-.+ .....++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 46788999999999999999999999998654 3444444
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.90 E-value=8.7 Score=32.01 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCc--hhhhhhh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDSLI 83 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD--~EL~~L~ 83 (110)
+.++++.|.+.|+..+...|+|+|+-+|+-.+ .....++
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 36788999999999999999999999998644 3344444
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.21 E-value=7.5 Score=30.65 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcCCceeccccccccccCchh
Q psy9662 46 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 78 (110)
Q Consensus 46 ~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~E 78 (110)
.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 85 ~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 577889999999899999999999999976553
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=37.67 E-value=15 Score=31.17 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 78 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~E 78 (110)
+.++|+.|.+.|...+...|+|+|+-+++=.+++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 43 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 43 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 4678899999999999999999999999866543
No 70
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=37.15 E-value=33 Score=24.85 Aligned_cols=46 Identities=17% Similarity=0.000 Sum_probs=33.0
Q ss_pred ccCchhHHHHHHHHHH-------HHHHHHHHHHHHHhhcCCceeccccccccc
Q psy9662 28 RVGATAAVYSAAILEY-------LTAEVLELAGNASKDLKVKRITPRHLQLAI 73 (110)
Q Consensus 28 Rvs~~A~vyLaavLEy-------l~~EIlelA~~~A~~~~~k~I~p~hI~~Ai 73 (110)
.++.++.-+|.....- -+..+++.|...|...++..|+++|+..++
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVA 319 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 6777777777655443 123677777778877888899999998765
No 71
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=35.85 E-value=20 Score=21.00 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 36 YSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 36 yLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
|-.|=|+.++.|- ...|-..+...|+.+|+..|++
T Consensus 37 ~SGADi~~l~~eA----~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 37 ASGAEVKGVCTEA----GMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp CCHHHHHHHHHHH----HHHHHHTTCSEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHHHHHhCCCCCCHHHHHHHHH
Confidence 3344444444433 3334445678899999988764
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.46 E-value=18 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 78 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~E 78 (110)
+..+|+.|..+|...+...|.++|+-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4678899999999999999999999999987654
No 73
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=32.01 E-value=47 Score=24.08 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=36.8
Q ss_pred cccCchhHHHHHHHHH------HHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 27 GRVGATAAVYSAAILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 27 ~Rvs~~A~vyLaavLE------yl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
..++.++.-+++.... ..+..+++.+...|...+...|+.+|++.++.
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 3567777777777666 44567888888888777888999999988764
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.83 E-value=12 Score=31.08 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhcCCceeccccccccccCchh
Q psy9662 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 78 (110)
Q Consensus 45 ~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~E 78 (110)
+.++|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3678899999999999999999999999975543
No 75
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=30.12 E-value=8.2 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 46 AEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 46 ~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
...|.+|.-.|.-+|.. |+..||+.|..
T Consensus 50 tktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 50 NHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 56678888888777666 99999999886
No 76
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=28.58 E-value=61 Score=21.59 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=24.9
Q ss_pred ccCchhHHHHHHHHHHH---HHHHHHHHHHHHhhcCCceeccccccccccC
Q psy9662 28 RVGATAAVYSAAILEYL---TAEVLELAGNASKDLKVKRITPRHLQLAIRG 75 (110)
Q Consensus 28 Rvs~~A~vyLaavLEyl---~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~n 75 (110)
.++.++..+|....+-= +..+++.+...|...+ +.|+.+|++.++.+
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 45656655555443311 2234444444553333 45888888877653
No 77
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=28.11 E-value=33 Score=20.28 Aligned_cols=44 Identities=16% Similarity=-0.014 Sum_probs=29.3
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecccccccccc
Q psy9662 27 GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 27 ~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
..+...+.-|-.|=|+.++.|-.-.|. ..++..|+.+|+..|+.
T Consensus 23 ~~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 23 DSLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYA 66 (82)
T ss_dssp TTTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHH
Confidence 456666666777777777776554443 33567888888887764
No 78
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=26.87 E-value=24 Score=24.83 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceecccccc---cccc-CchhhhhhhhhhhcCCc
Q psy9662 37 SAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ---LAIR-GDEELDSLIKATIAGGG 91 (110)
Q Consensus 37 LaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~---~Ai~-nD~EL~~L~~~~i~~~g 91 (110)
+...|+-+-.++..+....|....+.+|++++|+ ..|. .+++|..|-..++++|+
T Consensus 50 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l~~l~~FILPGg~ 108 (177)
T 1woz_A 50 MKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKWLEERTVEYRKESGPVKLFVIPGGS 108 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCHHHHHHHHHHHHHHHhhCCCCCceecCCCC
Confidence 5666777777888887777754333467777776 4554 45555444334455554
No 79
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=26.25 E-value=58 Score=23.48 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=34.3
Q ss_pred ccCchhHHHHHHHHH------HHHHHHHHHHHHHHhhcCCceeccccccccccC
Q psy9662 28 RVGATAAVYSAAILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 75 (110)
Q Consensus 28 Rvs~~A~vyLaavLE------yl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~n 75 (110)
.++.++.-++..... ..+.++++.+...|...+...|+.+|++.++..
T Consensus 218 ~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 218 VLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp CSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 566677777766655 233457777877777778889999999877653
No 80
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=23.42 E-value=77 Score=25.99 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=41.7
Q ss_pred cchhhhhhhhhcCC--CcccccCchhHHHHHHHHHHHHH---------------------HHHHHHHHHHhhcCCceecc
Q psy9662 10 FPVGRIHRHLKNRT--TSHGRVGATAAVYSAAILEYLTA---------------------EVLELAGNASKDLKVKRITP 66 (110)
Q Consensus 10 fPV~ri~r~Lk~~~--~~~~Rvs~~A~vyLaavLEyl~~---------------------EIlelA~~~A~~~~~k~I~p 66 (110)
++...+.++....+ ....+++.++.-|+......+=. -++.+|-..|+-.++..++|
T Consensus 394 ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~ 473 (506)
T 3f8t_A 394 PSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEP 473 (506)
T ss_dssp CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCH
Confidence 44555555444221 11257787777777765444311 25666677788889999999
Q ss_pred cccccccc
Q psy9662 67 RHLQLAIR 74 (110)
Q Consensus 67 ~hI~~Ai~ 74 (110)
+|++.|++
T Consensus 474 eDV~~Ai~ 481 (506)
T 3f8t_A 474 EDVDIAAE 481 (506)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 81
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=22.87 E-value=35 Score=23.83 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCceecccccccccc
Q psy9662 48 VLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 48 IlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
+++.|...|...++..|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 344445555566778899999987763
No 82
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.65 E-value=42 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCCceeccccccccc
Q psy9662 48 VLELAGNASKDLKVKRITPRHLQLAI 73 (110)
Q Consensus 48 IlelA~~~A~~~~~k~I~p~hI~~Ai 73 (110)
+++.|...|...++..|+.+|++.|+
T Consensus 228 ~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 228 LLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 34444455555567789999988765
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=22.21 E-value=43 Score=23.77 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCCceeccccccccc
Q psy9662 48 VLELAGNASKDLKVKRITPRHLQLAI 73 (110)
Q Consensus 48 IlelA~~~A~~~~~k~I~p~hI~~Ai 73 (110)
+++.|...|...++..|+.+|++.|+
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 34445555555567789999998775
No 84
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=20.12 E-value=43 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhcCCceecccccccccc
Q psy9662 47 EVLELAGNASKDLKVKRITPRHLQLAIR 74 (110)
Q Consensus 47 EIlelA~~~A~~~~~k~I~p~hI~~Ai~ 74 (110)
.++..|...|...++..|+++|++.|+.
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 3455555566666788899999997764
Done!