RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9662
(110 letters)
>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional.
Length = 136
Score = 180 bits (459), Expect = 2e-60
Identities = 85/94 (90%), Positives = 89/94 (94%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRIHR LK R ++HGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39 FPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 98
Query: 70 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 103
QLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 99 QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional.
Length = 134
Score = 164 bits (416), Expect = 7e-54
Identities = 67/102 (65%), Positives = 78/102 (76%), Gaps = 2/102 (1%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR+LK + RVGA A VY AA+LEYLTAEVLELAGNA+KD K KRITPRH+
Sbjct: 28 FPVGRVHRYLKKGRYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHI 86
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGTQKPV 110
QLAIR DEEL+ L+ TIA GGV+P+IHK L+ KK K
Sbjct: 87 QLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKPKQG 128
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome. The
nucleosome is an octamer containing two H2A, H2B, H3,
and H4 subunits. The H2A subunit performs essential
roles in maintaining structural integrity of the
nucleosome, chromatin condensation, and binding of
specific chromatin-associated proteins.
Length = 115
Score = 158 bits (402), Expect = 7e-52
Identities = 67/96 (69%), Positives = 78/96 (81%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRIHR+LK + RVGA A VY AA+LEYLTAEVLELAGNA++D K KRITPRHL
Sbjct: 21 FPVGRIHRYLKKGRYA-ERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHL 79
Query: 70 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 104
QLA+R DEEL+ L+K TIA GGV+P+IHK L+ KK
Sbjct: 80 QLAVRNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115
>gnl|CDD|197711 smart00414, H2A, Histone 2A.
Length = 106
Score = 156 bits (397), Expect = 2e-51
Identities = 67/97 (69%), Positives = 78/97 (80%), Gaps = 2/97 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRIHR L+ T + RVGA A VY AA+LEYLTAEVLELAGNA++D K +RITPRHL
Sbjct: 10 FPVGRIHRLLRKGTYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHL 68
Query: 70 QLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKG 105
QLAIR DEEL+ L+K TIA GGV+P+IHK L+ KK
Sbjct: 69 QLAIRNDEELNKLLKGVTIAQGGVLPNIHKVLLPKKT 105
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 128 bits (323), Expect = 9e-40
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+ R LK + R+GA A VY AA+LEYL AE+LELAGNA++D K KRI PRHL
Sbjct: 27 FPVGRVKRLLK-KGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHL 85
Query: 70 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL+ L+ TIA GGV+P+I+ L+ K
Sbjct: 86 QLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKS 121
>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional.
Length = 132
Score = 115 bits (289), Expect = 1e-34
Identities = 60/97 (61%), Positives = 71/97 (73%), Gaps = 2/97 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRI R+LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 27 FPVGRIARYLKAGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHI 85
Query: 70 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKG 105
QLA+R DEEL L+ TIA GGV+P+IH L+ KK
Sbjct: 86 QLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKS 122
>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional.
Length = 139
Score = 111 bits (278), Expect = 8e-33
Identities = 59/99 (59%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRI R LK + RVGA A VY +A+LEYL AEVLELAGNA++D K RI PRH+
Sbjct: 30 FPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHI 88
Query: 70 QLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGTQ 107
QLA+R DEEL L+ + TIA GGV+P+IH++L+ KK +
Sbjct: 89 QLAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVGK 127
>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional.
Length = 129
Score = 102 bits (254), Expect = 2e-29
Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRI R+LK + R+GA A VY AA+LEYLTAEVLELAGNA++D K RI PRH+
Sbjct: 25 FPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHI 83
Query: 70 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 104
QLAIR DEEL L+ + TIA GGV+P+IH L+ KK
Sbjct: 84 QLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKK 119
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4.
Length = 75
Score = 79.9 bits (198), Expect = 3e-21
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 8 PNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 67
P R+ R LK + R+ + A V LE L E+LE AG ++ K K ITPR
Sbjct: 7 LKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKRKTITPR 66
Query: 68 HLQLAIRGD 76
+QLA+R D
Sbjct: 67 DIQLAVRLD 75
>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional.
Length = 134
Score = 78.5 bits (193), Expect = 4e-20
Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 9/108 (8%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNAS--KDLKVKRITPR 67
FPVGR+ L+ R R+GA+ AVY AA+LEYLTAE+LEL+ A+ + K KR+TPR
Sbjct: 26 FPVGRVGSLLR-RGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPR 84
Query: 68 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLI-----GKKGTQKP 109
+ LA+R D++L SL+K T++ GGV+P ++K+L GKK P
Sbjct: 85 TVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKKHKSGKKAKATP 132
>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional.
Length = 58
Score = 36.2 bits (83), Expect = 2e-04
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYL 44
FPVGRI R+LK + R+GA A VY AA+LEYL
Sbjct: 25 FPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYL 58
>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit
(DRAP1 homolog) [Transcription].
Length = 113
Score = 36.5 bits (84), Expect = 4e-04
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FP+ R+ + ++ G+VG + V ++ LE E++ L+ ++ KR+T L
Sbjct: 24 FPIARLKKIMQL-DEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFL 82
Query: 70 QLAIRGDEELDSL 82
+ A DE+ D L
Sbjct: 83 KRATESDEKFDFL 95
>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear
distribution) C and similar proteins. Aspergillus
nidulas (An) NUDC is needed for nuclear movement.
AnNUDC is localized at the hyphal cortex, and binds
NUDF at spindle pole bodies (SPBs) and in the cytoplasm
at different stages in the cell cycle. At the SPBs it
is part of the dynein molecular motor/NUDF complex that
regulates microtubule dynamics. Mammalian(m) NUDC
associates both with the dynein complex and also with
an anti-inflammatory enzyme, platelet activating factor
acetylhydrolase I, PAF-AH(I) complex, through binding
mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC
is important for cell proliferation both in normal and
tumor tissues. Its expression is elevated in various
cell types undergoing mitosis or stimulated to
proliferate, with high expression levels observed in
leukemic cells and tumors. For a leukemic cell line,
human NUDC was shown to activate the thrombopoietin
(TPO) receptor (Mpl) by binding to its extracellular
domain, and promoting cell proliferation and
differentiation. This group also includes the human
broadly immunogenic tumor associated antigen, CML66,
which is highly expressed in a variety of solid tumors
and in leukemias. In normal tissues high expression of
CML66 is limited to testis and heart.
Length = 85
Score = 29.4 bits (67), Expect = 0.12
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 12/55 (21%)
Query: 53 GNASKDLKVKRITPRHLQLAIRGDE-----ELDSLIKA-----TIAGGGVIPHIH 97
G SKD+KV+ ITP+HL++ ++G E EL + +K T+ G ++ I
Sbjct: 19 GTKSKDVKVE-ITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLL-EIT 71
>gnl|CDD|193535 cd05659, M18_API, M18 Peptidase Aminopeptidase I. Peptidase M18
family, Aminopeptidase I (Vacuolar aminopeptidase I;
Polypeptidase; Leucine aminopeptidase IV; LAPIV;
Aminopeptidase III; Aminopeptidase yscI; EC 3.4.11.22)
subfamily. Aminopeptidase I is widely distributed in
bacteria and eukaryotes, but only the yeast enzyme has
been characterized to date. It is a vacuolar enzyme,
synthesized as a cytosolic proform, and proteolytically
matured upon arrival in the vacuole. The
pro-aminopeptidase I (proAPI) does not enter the vacuole
via the secretory pathway. In non-starved cells, it uses
the cytoplasm to vacuole targeting (cvt) pathway and in
cells starved for nitrogen, it is targeted to the
vacuole via autophagy. Yeast aminopeptidase I is active
only in its dodecameric form with broad substrate
specificity, acting on all aminoacyl and peptidyl
derivatives that contain a free alpha-amino group; this
is in contrast to the highly selective M18 mammalian
aspartyl aminopeptidase. N-terminal leucine and most
other hydrophobic amino acid residues are the best
substrates while glycine and charged amino acid residues
in P1 position are cleaved much more slowly. This enzyme
is strongly and specifically activated by zinc (Zn2+)
and chloride (Cl-) ions.
Length = 443
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 27 GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 64
G G T A + E AE+L L G +L ++R
Sbjct: 276 GSDGNTGA--QSRFFENFVAELLALQGEEYSELDLRRA 311
>gnl|CDD|131922 TIGR02875, spore_0_A, sporulation transcription factor Spo0A.
Spo0A, the stage 0 sporulation protein A, is a
transcription factor critical for the initiation of
sporulation. It contains a response regulator receiver
domain (pfam00072). In Bacillus subtilis, it works
together with response regulator Spo0F and the
phosphotransferase Spo0B, both of which are missing from
at least some sporulating species and thus not part of
the endospore forming bacteria minimal gene set. Spo0A,
however, is universal among endospore-forming species
[Cellular processes, Sporulation and germination].
Length = 262
Score = 29.4 bits (66), Expect = 0.32
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 41 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHI 96
LE L A + +LA + D+ T A + ++L++ I I GV HI
Sbjct: 111 LEILAARIRQLAWGTNADILADSPTVPPASHAAK-TKDLEAEITNIIHEIGVPAHI 165
>gnl|CDD|235018 PRK02256, PRK02256, putative aminopeptidase 1; Provisional.
Length = 462
Score = 27.1 bits (61), Expect = 1.9
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 27 GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 64
G G T A + E AE+L DLK++R
Sbjct: 293 GSEGNTGA--QSRFFENFVAELLAKTEGNYSDLKLRRA 328
>gnl|CDD|215515 PLN02956, PLN02956, PSII-Q subunit.
Length = 185
Score = 26.3 bits (58), Expect = 3.0
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 6 QQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRIT 65
+P FP + + + + R GA AAV + + + + +A ++
Sbjct: 23 LKPTFP-SKGNTSRRPLRSISRRRGALAAVAGVLLAQLEASFNVAIAFG----FDLRLTA 77
Query: 66 P-RHLQLA---IRGDEELDSLIKATI 87
P R ++ A +RG E +KA I
Sbjct: 78 PERTVEEAESGVRGHAENLLRVKALI 103
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 26.7 bits (59), Expect = 3.0
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 15 IHRHLKNRTTSHGRVGATAAVYSAAILEYL-TAEVLELAGNASKDLKVKRITPRHLQLAI 73
I+ L N + HG G + A + L +E+LE A + +L K IT Q
Sbjct: 871 INNGLGNDSLCHGDFGIIEVLLHYA--KILSDSELLESANKLANELVSKAITYGINQGLN 928
Query: 74 RGDEELDSLIKATIAGGGVIPHIHKSLIGKK 104
+E + T G ++ +
Sbjct: 929 HANESFGLMNGVTGIGYSLLRISSPKFVPSI 959
>gnl|CDD|236653 PRK10137, PRK10137, alpha-glucosidase; Provisional.
Length = 786
Score = 26.7 bits (59), Expect = 3.1
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 14 RIHRHLKNRT-------TSHGRVGATAAVYSA------------------AIL----EYL 44
++H+ L +T TS + + +Y+ IL YL
Sbjct: 223 QVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYL 282
Query: 45 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 80
TA K L TP ++A++ E L+
Sbjct: 283 TASQQRWEEYLKKGLTNPDATPEQTRVAVKAMETLN 318
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and
dynamics].
Length = 91
Score = 25.8 bits (57), Expect = 3.2
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 11 PVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 70
PV RI R RV ++A LE E+ E A ++ K K + ++
Sbjct: 24 PVRRILR-----KAGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIK 78
Query: 71 LAIR 74
LA++
Sbjct: 79 LALK 82
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family. The spindle pole
body (SPB) functions as the microtubule-organising
centre in yeast. Members of this family are spindle pole
body (SBP) components such as Spc97 and Spc98 that form
a complex with gamma-tubulin. This family of proteins
includes the grip motif 1 and grip moti 2.
Length = 528
Score = 26.3 bits (58), Expect = 4.3
Identities = 17/103 (16%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 10 FPVGRIHRHLKNRT----TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRIT 65
+G ++R L+ +S G +AA+ E L + +A S+ L +T
Sbjct: 45 LELGTLYRRLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLSNGTLT 104
Query: 66 PRHLQLAIRG--------DEELDSLIKATIAGGGVIPHIHKSL 100
L ++ E ++ ++ ++ GG ++ +++ +
Sbjct: 105 LLQLLAELQPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERI 147
>gnl|CDD|233742 TIGR02135, phoU_full, phosphate transport system regulatory
protein PhoU. This model describes PhoU, a regulatory
protein of unknown mechanism for high-affinity
phosphate ABC transporter systems. The protein consists
of two copies of the domain described by pfam01895.
Deletion of PhoU activates constitutive expression of
the phosphate ABC transporter and allows phosphate
transport, but causes a growth defect and so likely has
some second function [Regulatory functions, Other,
Transport and binding proteins, Anions].
Length = 212
Score = 25.7 bits (57), Expect = 5.1
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 41 LEYLTAEVLELAGNASKDLK--VKRITPRHLQLA---IRGDEELDSL 82
L+ L E+LE+ G + L+ V+ +T + +LA I D+++++L
Sbjct: 7 LKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINAL 53
>gnl|CDD|176714 cd09012, Glo_EDI_BRP_like_24, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping.
Length = 124
Score = 25.2 bits (56), Expect = 6.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 77 EELDSLIKATIAGGGVIPH 95
EE+D L++ +A GG
Sbjct: 80 EEVDELVEKALAAGGKEFR 98
>gnl|CDD|217953 pfam04190, DUF410, Protein of unknown function (DUF410). This
family of proteins is from Caenorhabditis elegans and
has no known function. The protein has some GO
references indicating that the protein has a positive
regulation of growth rate and is involved in nematode
larval development.
Length = 251
Score = 25.2 bits (55), Expect = 7.9
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 37 SAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATI 87
SAA L EVLE A A D KV R+ + + E + I
Sbjct: 28 SAADLTTYLLEVLEKAEVADSDSKVARLA-ELINELDPSEPERKKCVDRAI 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,625,513
Number of extensions: 482515
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 39
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)