RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9662
(110 letters)
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 139 bits (353), Expect = 3e-45
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA NA++D K R+TPRH+
Sbjct: 12 FPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHI 70
Query: 70 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 104
LA+ DEEL+ L+K TIA GGV+P+IH L+ KK
Sbjct: 71 LLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 106
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 133 bits (337), Expect = 7e-43
Identities = 60/95 (63%), Positives = 70/95 (73%), Gaps = 2/95 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGR+HR L+ + RVGA A VY AA+LEYLTAE+LELAGNA++D K RI PRHL
Sbjct: 13 FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 71
Query: 70 QLAIRGDEEL-DSLIKATIAGGGVIPHIHKSLIGK 103
QLAIR DEEL L K TIA GGV+P+I L+ K
Sbjct: 72 QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 106
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 132 bits (334), Expect = 2e-42
Identities = 91/92 (98%), Positives = 92/92 (100%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FPVGRIHRHLK+RTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 12 FPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 71
Query: 70 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 101
QLAIRGDEELDSLIKATIAGGGVIPHIHKSLI
Sbjct: 72 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 103
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 107 bits (269), Expect = 9e-32
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
PV +IH LK ++ +VY A+LEY++A++L+LAGN ++++ IT + +
Sbjct: 100 LPVEKIHPLLKEVLGY--KIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDI 157
Query: 70 QLAIRGDEELDSLI 83
++A+ D+ L +
Sbjct: 158 KVAMCADKVLMDMF 171
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 69.4 bits (170), Expect = 7e-18
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
FP RI + ++ G+V A V + LE +L+ A ++ K +T HL
Sbjct: 3 FPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 70 QLAI 73
+ I
Sbjct: 62 KQCI 65
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit
gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 69.1 bits (169), Expect = 1e-17
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 11 PVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 70
P+ RI + +K + A A V A + E+ A ++D K + + +
Sbjct: 2 PLARIKKIMKLDE-DVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 60
Query: 71 LAIRGDEELDSLI 83
+AI ++ D LI
Sbjct: 61 MAITKFDQFDFLI 73
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 47.5 bits (113), Expect = 1e-08
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
F + R LK R + A ++ T E+ E A + + K + +
Sbjct: 80 FGRATVRRILKRAGIE--RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDV 137
Query: 70 QLAIR 74
+ AI
Sbjct: 138 EKAIT 142
Score = 35.1 bits (81), Expect = 4e-04
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
P I R + R+ A + + V A + K + HL
Sbjct: 2 LPKAAIERIFRQGIGER-RLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 70 QLAIR 74
+
Sbjct: 61 KALAD 65
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 29.3 bits (66), Expect = 0.024
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 1 MAEWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 60
M E P+ I R +KN RV A + A +LE + E+ A +K
Sbjct: 1 MGE------LPIAPIGRIIKN--AGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAG 52
Query: 61 VKRITPRHLQLAIR 74
K I ++LA +
Sbjct: 53 RKTIKAEDIELARK 66
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 27.8 bits (62), Expect = 0.082
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 27 GRVGATAAVYSAAILEYLTAEVLELAGN-ASKDLKVKRITPRHLQLAIRGDEELDSLI 83
G + E + A + + HL + ++ L+ L+
Sbjct: 8 GLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 65
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 27.4 bits (61), Expect = 0.18
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 8 PNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 67
P R+ R + + R ++A + E + E + K I P+
Sbjct: 23 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 82
Query: 68 HLQLA--IRGD 76
+QLA IRG+
Sbjct: 83 DIQLARRIRGE 93
>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus
filiformis [TaxId: 276]}
Length = 86
Score = 24.4 bits (53), Expect = 2.0
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 48 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK-GT 106
V L + +V R+T + D + + AGG VIP + + L ++ G
Sbjct: 24 VGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGG-VIPEVLRVLKERRTGK 82
Query: 107 QKPV 110
++P+
Sbjct: 83 ERPI 86
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 23.9 bits (52), Expect = 2.3
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 11 PVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 70
P+ + R ++ RV AA A LE E+ + A ++ K + ++
Sbjct: 4 PIAPVDRLIRK--AGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 61
Query: 71 LAIR 74
LAI+
Sbjct: 62 LAIK 65
>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase
HisC {Thermotoga maritima [TaxId: 2336]}
Length = 334
Score = 24.7 bits (52), Expect = 2.7
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 63 RITPRHLQLAIRGDEELDSLIKA 85
R +++ I EE D +++
Sbjct: 308 RSFREGVRITIGKREENDMILRE 330
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 23.2 bits (49), Expect = 7.2
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 47 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIH 97
L A + + + I P HL A+ E + + G+
Sbjct: 9 LALADAQSLALGHDNQFIEPLHLMSALLNQE--GGSVSPLLTSAGINAGQL 57
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an
Hsp100 chaperone {Escherichia coli [TaxId: 562]}
Length = 142
Score = 23.3 bits (49), Expect = 7.5
Identities = 10/64 (15%), Positives = 25/64 (39%)
Query: 47 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGT 106
L +A +++ + + +T HL LA+ + ++A + ++ I +
Sbjct: 8 LSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTP 67
Query: 107 QKPV 110
P
Sbjct: 68 VLPA 71
>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen
regulation fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 92
Score = 22.8 bits (48), Expect = 7.9
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 14 RIHRHLKNRTTSHGRVGATAAVYSAAILEYL 44
++ + + + + S AIL +L
Sbjct: 50 SVNPNARVPALIDHGMDNLSIWESGAILLHL 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0382 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,564
Number of extensions: 15983
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 21
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.8 bits)