BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9665
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+++VPF HG+G+ L + ++V++ F+ LFL S++ Y++ FLAK
Sbjct: 243 LSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAK 302
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S L+D+YDLS+L I G AP+ K + V +R L ++QGYG+TE T IL+T
Sbjct: 303 STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP--GIRQGYGLTETTSAILITPKG 360
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D P +VGKV+P + KV+
Sbjct: 361 DDKP-GAVGKVVPFFEAKVV 379
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+++VPF HG+G+ L + ++V++ F+ LFL S++ Y++ F AK
Sbjct: 238 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 297
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S L+D+YDLS+L I G AP+ K + V +R L ++QGYG+TE T IL+T
Sbjct: 298 STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP--GIRQGYGLTETTSAILITPEG 355
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D P +VGKV+P + KV+
Sbjct: 356 DDKP-GAVGKVVPFFEAKVV 374
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+++VPF HG+G+ L + ++V++ F+ LFL S++ Y++ F AK
Sbjct: 238 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 297
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S L+D+YDLS+L I G AP+ K + V +R L ++QGYG+TE T IL+T
Sbjct: 298 STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP--GIRQGYGLTETTSAILITPEG 355
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D P +VGKV+P + KV+
Sbjct: 356 DDKP-GAVGKVVPFFEAKVV 374
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+++VPF HG+G+ L + ++V++ F+ LFL S++ Y++ F AK
Sbjct: 243 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 302
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S L+D+YDLS+L I G AP+ K + V +R L ++QGYG+TE T IL+T
Sbjct: 303 STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP--GIRQGYGLTETTSAILITPEG 360
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D P +VGKV+P + KV+
Sbjct: 361 DDKP-GAVGKVVPFFEAKVV 379
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+ ++PF HG+G+ L + ++V++ F+ LFL S++ Y++ F AK
Sbjct: 272 LTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 331
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S LVD+YDLS+L I G AP+ K + V +R L ++QGYG+TE T I++T
Sbjct: 332 STLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLP--GIRQGYGLTETTSAIIITPRG 389
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D + GKV+P K++
Sbjct: 390 RDDKPGACGKVVPFFSAKIV 409
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+ +VPF HG+G+ L + ++V+L FD FL +++ Y+ T L K
Sbjct: 240 LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK 299
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S L+++YDLS+L I G AP+ K + V R L ++QGYG+TE T I++T
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP--GVRQGYGLTETTSAIIITPEG 357
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D P +S GKV+P K KV+
Sbjct: 358 DDKPGAS-GKVVPLFKAKVI 376
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+ +VPF HG+G+ L + ++V+L FD FL +++ Y+ T L K
Sbjct: 240 LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK 299
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S L+++YDLS+L I G AP+ K + V R L ++QGYG+TE T I++T
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP--GVRQGYGLTETTSAIIITPEG 357
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D P +S GKV+P K KV+
Sbjct: 358 DDKPGAS-GKVVPLFKAKVI 376
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
+ +VPF HG+G+ L + ++V+L FD FL +++ Y+ T L K
Sbjct: 240 LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNK 299
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSD 118
S L+++YDLS+L I G AP+ K + V R L ++QGYG+TE T I++T
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP--GVRQGYGLTETTSAIIITPEG 357
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
D P +S GKV+P K KV+
Sbjct: 358 DDKPGAS-GKVVPLFKAKVI 376
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLA 59
+ ++P FH Y L +ML + + ++++P F+ L IEKY+V+ +A
Sbjct: 227 LCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE----LTILVT 115
KSP +D++DLSSL I+ G AP+GK D V R + QGYGMTE L + +
Sbjct: 287 KSPDLDKHDLSSLRMIKSGGAPLGKELEDTV--RAKFPQARLGQGYGMTEAGPVLAMCLA 344
Query: 116 FSD--LDVPSSSVGKVMPSMKMKVL 138
F+ D+ + G V+ + +MK++
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIV 369
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLA 59
+ ++P FH Y L +ML + + ++++P F+ +L L I++ +VT +A
Sbjct: 274 LCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIA 333
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS-- 117
KS ++YDLSS+ ++ GAAP+GK D V + + + QGYGMTE ++ S
Sbjct: 334 KSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNA--KLGQGYGMTEAGPVLAMSLG 391
Query: 118 ----DLDVPSSSVGKVMPSMKMKVL 138
V S + G V+ + +MK++
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIV 416
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 16/191 (8%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAKS--P 62
P FH L+ + + N+ VV F+ +IEKY+ T L +
Sbjct: 229 PXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLES 288
Query: 63 LVDQYDLSSLTNIRCGAAPVGKSTLDQV----GERLGLSMDSMKQGYGMTELTILVTFSD 118
YD S L GA PV + ++++ E+ Q +G TE VT +
Sbjct: 289 SNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNP 348
Query: 119 ---LDVPSSSVGKVMPSMKMKVLV----KSHTMGSQDSFVISGDEIQFAPYCRKMSLGAY 171
LD S++ G +++KV+ + +G VI G I F Y ++
Sbjct: 349 PLRLD-KSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNI-FKGYWKREKENQE 406
Query: 172 LCHWLKLKGKQ 182
C W KG++
Sbjct: 407 -CWWYDEKGRK 416
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAK 60
++++P +H GL ++L+A+ + ++ F+ L+ I+ R+T +L +
Sbjct: 208 LSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ 267
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT---ILVTFS 117
L + Y+L I G A + +T+ + + L + +GMTE + T
Sbjct: 268 QGLHEPYNLQK---ILLGGAKLS-ATMIETALQYNL---PIYNSFGMTETCSQFLTATPE 320
Query: 118 DLDVPSSSVGKVMPSMKMKVLVKSHTMGSQDSFVISGDEI 157
L +VG MPS + V +K+ +I G +
Sbjct: 321 MLHARPDTVG--MPSANVDVKIKNPNKEGHGELMIKGANV 358
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 36 FLSSIEKYRVTXXXXXXXXXXFLAKSPLVDQY---DLSSLTNIRCGAAPVGKSTLD---Q 89
+L I KY+ T + K ++ DLSS GA PV + T + Q
Sbjct: 252 WLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ 311
Query: 90 VGERLGLSMDSMKQGYGMTELTILVT 115
+ G ++ YG+ E T+LVT
Sbjct: 312 AFKEFGFRKEAFYPCYGLAEATLLVT 337
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 4 VPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAKSPL 63
+P FH L ++ + L+ +P FD S I + RV F+ + P
Sbjct: 218 LPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE 277
Query: 64 VDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
+ D G AP+ ++ + + + QGY +TE
Sbjct: 278 FAELDAPDFRYFITGGAPMPEALIKIYAAK----NIEVVQGYALTE 319
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 4 VPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTXXXXXXXXXXFLAKSPL 63
+P FH L ++ + L+ +P FD S I + RV F+ + P
Sbjct: 204 LPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE 263
Query: 64 VDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
+ D G AP+ ++ + + + QGY +TE
Sbjct: 264 FAELDAPDFRYFITGGAPMPEALIKIYAAK----NIEVVQGYALTE 305
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 18 AICMNNKLVVLPHFDGHL---FLSSIEKYRVTXXXXXXXXXXFLAKSPLVDQYDLSSLTN 74
A +LVVLPH+ +L+ I VT L ++ + D+S L
Sbjct: 237 AFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRY 296
Query: 75 IRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMT-----ELTILVTFSDLDVPSSSVGKV 129
+ G + L + GL + GYG+T +T + L +S +G+
Sbjct: 297 VIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDASIIGRA 356
Query: 130 MPSMKMKVL 138
+PS +V+
Sbjct: 357 LPSFGTRVV 365
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 24 KLVVLPHFDGHLFLSSIEKY 43
K+ VL +DGH FL S+E Y
Sbjct: 258 KIYVLGGYDGHTFLDSVECY 277
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 24 KLVVLPHFDGHLFLSSIEKY 43
K+ VL +DGH FL S+E Y
Sbjct: 257 KIYVLGGYDGHTFLDSVECY 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,411,945
Number of Sequences: 62578
Number of extensions: 188891
Number of successful extensions: 323
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 18
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)