Query psy9665
Match_columns 207
No_of_seqs 130 out of 1952
Neff 9.9
Searched_HMMs 29240
Date Sat Aug 17 01:32:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 100.0 4.9E-34 1.7E-38 242.8 18.7 200 1-205 238-451 (550)
2 3ni2_A 4-coumarate:COA ligase; 100.0 8.7E-34 3E-38 240.6 16.6 200 1-205 227-446 (536)
3 2d1s_A Luciferase, luciferin 4 100.0 4.8E-33 1.7E-37 236.7 20.8 198 2-205 241-453 (548)
4 3g7s_A Long-chain-fatty-acid-- 100.0 5.3E-33 1.8E-37 236.4 15.0 201 2-205 226-451 (549)
5 3etc_A AMP-binding protein; ad 100.0 1.3E-32 4.4E-37 235.5 17.1 197 2-205 271-487 (580)
6 3e7w_A D-alanine--poly(phospho 100.0 5.3E-33 1.8E-37 234.5 14.5 199 1-205 188-410 (511)
7 4fuq_A Malonyl COA synthetase; 100.0 5.5E-33 1.9E-37 234.1 13.6 196 2-205 201-411 (503)
8 1pg4_A Acetyl-COA synthetase; 100.0 7E-33 2.4E-37 240.1 14.1 202 1-205 302-529 (652)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.4E-33 4.7E-38 239.6 9.0 199 1-205 227-442 (539)
10 1v25_A Long-chain-fatty-acid-C 100.0 3.7E-33 1.3E-37 237.0 11.4 198 1-205 223-447 (541)
11 3c5e_A Acyl-coenzyme A synthet 100.0 3E-32 1E-36 232.9 16.6 197 2-205 252-468 (570)
12 3fce_A D-alanine--poly(phospho 100.0 1.1E-32 3.7E-37 232.7 13.7 199 1-205 189-411 (512)
13 2v7b_A Benzoate-coenzyme A lig 100.0 4.1E-32 1.4E-36 230.0 17.2 199 1-205 229-441 (529)
14 3ipl_A 2-succinylbenzoate--COA 100.0 4.6E-32 1.6E-36 228.2 16.9 193 1-205 208-410 (501)
15 3r44_A Fatty acyl COA syntheta 100.0 2.5E-32 8.7E-37 230.8 12.5 198 1-205 215-425 (517)
16 3l8c_A D-alanine--poly(phospho 100.0 6E-32 2.1E-36 228.5 14.7 199 2-205 193-415 (521)
17 3o83_A Peptide arylation enzym 100.0 1.6E-32 5.4E-37 233.3 10.5 199 1-205 236-451 (544)
18 4gr5_A Non-ribosomal peptide s 100.0 5E-32 1.7E-36 231.4 13.6 197 1-205 258-481 (570)
19 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.1E-32 2.1E-36 227.7 13.4 197 1-205 200-414 (504)
20 4dg8_A PA1221; ANL superfamily 100.0 7.3E-32 2.5E-36 232.4 13.5 196 2-205 209-431 (620)
21 1ry2_A Acetyl-coenzyme A synth 100.0 1.4E-31 4.6E-36 232.3 14.7 202 1-205 308-538 (663)
22 3tsy_A Fusion protein 4-coumar 100.0 1.6E-31 5.4E-36 240.7 15.4 199 2-205 275-493 (979)
23 3nyq_A Malonyl-COA ligase; A/B 100.0 4.5E-31 1.5E-35 222.6 11.1 197 2-205 201-418 (505)
24 3ivr_A Putative long-chain-fat 100.0 1.3E-30 4.5E-35 219.8 12.4 195 1-205 205-412 (509)
25 1amu_A GRSA, gramicidin synthe 100.0 7.8E-31 2.7E-35 223.8 10.0 190 2-205 228-442 (563)
26 3rg2_A Enterobactin synthase c 100.0 1.1E-30 3.9E-35 224.9 10.5 198 2-205 230-446 (617)
27 3ite_A SIDN siderophore synthe 100.0 2.3E-30 8E-35 220.7 11.9 194 2-205 229-439 (562)
28 3gqw_A Fatty acid AMP ligase; 100.0 9.1E-30 3.1E-34 217.2 13.7 199 1-205 222-473 (576)
29 3kxw_A Saframycin MX1 syntheta 100.0 2.6E-30 8.9E-35 221.3 9.2 199 1-205 212-470 (590)
30 3t5a_A Long-chain-fatty-acid-- 100.0 5.2E-30 1.8E-34 214.3 9.8 185 1-189 234-480 (480)
31 2vsq_A Surfactin synthetase su 100.0 1.7E-28 5.8E-33 226.3 12.7 196 2-205 652-873 (1304)
32 3qov_A Phenylacetate-coenzyme 99.9 1.1E-25 3.9E-30 186.3 12.0 192 2-205 135-343 (436)
33 4gs5_A Acyl-COA synthetase (AM 99.9 1.4E-25 4.7E-30 181.5 8.7 179 1-205 82-262 (358)
34 2y27_A Phenylacetate-coenzyme 99.9 8E-25 2.7E-29 181.2 12.2 193 2-205 139-345 (437)
35 2y4o_A Phenylacetate-coenzyme 99.9 9.2E-25 3.1E-29 181.2 12.1 193 2-205 141-347 (443)
36 3hgu_A EHPF; phenazine, antibi 99.9 1.9E-23 6.3E-28 169.5 9.1 179 2-189 140-358 (369)
37 4eql_A 4-substituted benzoates 96.1 0.033 1.1E-06 47.3 9.2 116 72-204 302-436 (581)
38 4epl_A Jasmonic acid-amido syn 95.4 0.11 3.9E-06 44.1 9.8 120 69-204 301-443 (581)
39 4b2g_A GH3-1 auxin conjugating 95.3 0.084 2.9E-06 45.1 8.9 119 69-204 301-448 (609)
40 4gs5_A Acyl-COA synthetase (AM 94.7 0.012 3.9E-07 47.0 1.8 39 145-184 196-238 (358)
41 3ezx_A MMCP 1, monomethylamine 87.2 4.4 0.00015 29.6 8.6 80 7-89 104-194 (215)
42 4gr5_A Non-ribosomal peptide s 50.0 3.3 0.00011 34.8 -0.1 40 161-200 446-486 (570)
43 4e4g_A Methylmalonate-semialde 48.7 46 0.0016 27.8 6.7 59 4-62 170-239 (521)
44 1t90_A MMSDH, probable methylm 47.7 54 0.0018 27.0 6.9 69 4-80 149-228 (486)
45 3r31_A BADH, betaine aldehyde 47.5 68 0.0023 26.7 7.5 69 3-79 157-236 (517)
46 3fce_A D-alanine--poly(phospho 46.4 1.8 6.1E-05 35.8 -2.3 37 14-50 67-104 (512)
47 3o83_A Peptide arylation enzym 45.7 4.5 0.00015 33.7 0.1 38 14-51 96-134 (544)
48 3ite_A SIDN siderophore synthe 45.3 4.3 0.00015 33.9 -0.1 38 162-199 405-443 (562)
49 3i44_A Aldehyde dehydrogenase; 43.9 59 0.002 26.9 6.6 60 3-62 168-239 (497)
50 3ifg_A Succinate-semialdehyde 43.1 54 0.0018 27.0 6.2 60 4-63 156-227 (484)
51 3k2w_A Betaine-aldehyde dehydr 42.1 74 0.0025 26.3 6.9 81 3-94 155-247 (497)
52 3ju8_A Succinylglutamic semial 41.8 51 0.0018 27.2 5.9 59 4-62 147-216 (490)
53 2o2p_A Formyltetrahydrofolate 41.4 83 0.0028 26.2 7.1 69 3-79 185-265 (517)
54 3gqw_A Fatty acid AMP ligase; 41.4 2.2 7.5E-05 35.7 -2.5 42 14-55 90-139 (576)
55 3iwj_A Putative aminoaldehyde 40.5 70 0.0024 26.5 6.5 60 3-62 158-229 (503)
56 3u4j_A NAD-dependent aldehyde 39.8 71 0.0024 26.6 6.5 60 3-62 168-239 (528)
57 3ed6_A Betaine aldehyde dehydr 39.5 82 0.0028 26.2 6.8 61 3-63 177-249 (520)
58 2i2x_B MTAC, methyltransferase 39.4 71 0.0024 23.7 5.9 77 7-87 135-219 (258)
59 3ek1_A Aldehyde dehydrogenase; 38.7 77 0.0026 26.3 6.5 60 4-63 176-247 (504)
60 3b4w_A Aldehyde dehydrogenase; 37.8 99 0.0034 25.5 7.0 70 3-80 153-233 (495)
61 1uxt_A Glyceraldehyde-3-phosph 36.9 92 0.0032 25.7 6.7 79 4-93 165-254 (501)
62 3etf_A Putative succinate-semi 36.6 66 0.0022 26.2 5.7 69 4-80 134-213 (462)
63 3jz4_A Succinate-semialdehyde 35.6 1.1E+02 0.0036 25.2 6.9 79 4-93 153-243 (481)
64 3e7w_A D-alanine--poly(phospho 35.5 4.5 0.00015 33.4 -1.5 37 14-50 68-105 (511)
65 2ve5_A BADH, betaine aldehyde 35.4 92 0.0031 25.6 6.5 60 3-62 149-220 (490)
66 3etc_A AMP-binding protein; ad 35.1 4 0.00014 34.4 -1.8 38 14-51 127-165 (580)
67 2wme_A BADH, betaine aldehyde 34.7 1.1E+02 0.0038 25.2 6.8 70 3-80 149-230 (490)
68 1o04_A Aldehyde dehydrogenase, 34.3 1E+02 0.0034 25.5 6.5 69 3-79 165-245 (500)
69 3prl_A NADP-dependent glyceral 33.8 63 0.0022 26.8 5.2 59 4-62 160-230 (505)
70 1a4s_A ALDH, betaine aldehyde 33.8 1.4E+02 0.0048 24.7 7.3 69 3-79 162-241 (503)
71 2imp_A Lactaldehyde dehydrogen 32.9 1.2E+02 0.004 24.9 6.7 80 3-93 149-240 (479)
72 3rh9_A Succinate-semialdehyde 32.8 82 0.0028 26.1 5.8 60 4-63 155-226 (506)
73 1wnd_A Putative betaine aldehy 32.2 64 0.0022 26.7 5.0 80 3-93 166-256 (495)
74 2d4e_A 5-carboxymethyl-2-hydro 31.8 1.1E+02 0.0037 25.4 6.4 69 3-79 169-249 (515)
75 1bxs_A Aldehyde dehydrogenase; 31.7 1.1E+02 0.0039 25.2 6.4 69 3-79 166-246 (501)
76 2v7b_A Benzoate-coenzyme A lig 31.0 99 0.0034 25.3 6.0 43 13-55 88-131 (529)
77 1zxx_A 6-phosphofructokinase; 30.9 52 0.0018 25.6 4.0 35 8-42 171-207 (319)
78 3rix_A Luciferase, luciferin 4 30.7 1E+02 0.0035 25.4 6.1 46 13-58 90-136 (550)
79 3qan_A 1-pyrroline-5-carboxyla 30.7 73 0.0025 26.7 5.1 69 3-79 179-259 (538)
80 1pfk_A Phosphofructokinase; tr 30.4 54 0.0018 25.5 4.0 35 8-42 172-208 (320)
81 3g7s_A Long-chain-fatty-acid-- 30.3 1.1E+02 0.0037 25.3 6.2 45 13-57 92-137 (549)
82 1v25_A Long-chain-fatty-acid-C 29.8 1.1E+02 0.0037 25.2 6.1 45 13-57 87-132 (541)
83 2d1s_A Luciferase, luciferin 4 28.5 1.1E+02 0.0036 25.4 5.8 43 13-55 92-135 (548)
84 2j6l_A Aldehyde dehydrogenase 28.5 1.2E+02 0.004 25.1 6.0 68 4-79 165-247 (500)
85 1uzb_A 1-pyrroline-5-carboxyla 27.6 1E+02 0.0035 25.6 5.5 80 4-94 181-272 (516)
86 4f3x_A Putative aldehyde dehyd 27.3 1.5E+02 0.0051 24.5 6.4 69 3-79 168-247 (498)
87 1euh_A NADP dependent non phos 27.2 1.2E+02 0.0042 24.7 5.9 79 4-93 151-241 (475)
88 3ros_A NAD-dependent aldehyde 26.9 1.4E+02 0.0047 24.6 6.1 69 4-80 131-210 (484)
89 3pqa_A Lactaldehyde dehydrogen 26.6 1.2E+02 0.004 25.0 5.6 60 3-62 137-212 (486)
90 3c5e_A Acyl-coenzyme A synthet 26.0 1.2E+02 0.004 25.3 5.7 44 14-57 115-159 (570)
91 2w8n_A Succinate-semialdehyde 25.9 1.3E+02 0.0045 24.7 5.8 68 4-79 154-236 (487)
92 3ni2_A 4-coumarate:COA ligase; 25.5 1.2E+02 0.0041 24.9 5.6 43 13-55 89-132 (536)
93 3r64_A NAD dependent benzaldeh 25.3 1.1E+02 0.0037 25.4 5.2 60 3-62 155-227 (508)
94 3ivr_A Putative long-chain-fat 25.1 1.3E+02 0.0043 24.5 5.6 44 14-57 72-116 (509)
95 3kp1_A D-ornithine aminomutase 24.3 2.8E+02 0.0095 24.2 7.3 65 21-88 633-708 (763)
96 3ty7_A Putative aldehyde dehyd 23.8 1.2E+02 0.004 24.9 5.1 59 4-62 147-217 (478)
97 1t5h_X 4-chlorobenzoyl COA lig 23.8 1.6E+02 0.0054 23.9 6.0 46 13-58 69-117 (504)
98 3r44_A Fatty acyl COA syntheta 23.6 1.6E+02 0.0056 23.9 6.0 41 13-53 83-124 (517)
99 3ipl_A 2-succinylbenzoate--COA 22.0 1.6E+02 0.0055 23.7 5.7 39 13-51 63-102 (501)
100 4e3x_A Delta-1-pyrroline-5-car 21.8 1.5E+02 0.0052 24.9 5.5 69 3-80 207-287 (563)
101 1y80_A Predicted cobalamin bin 21.8 2.2E+02 0.0074 20.1 8.7 78 7-87 100-186 (210)
102 4dng_A Uncharacterized aldehyd 21.5 1.5E+02 0.0051 24.3 5.3 60 3-62 150-222 (485)
103 3tsy_A Fusion protein 4-coumar 21.3 17 0.00056 32.8 -0.5 40 14-53 129-169 (979)
104 3e8v_A Possible transglutamina 21.2 1.3E+02 0.0044 18.2 3.6 11 134-144 4-14 (82)
105 4a3s_A 6-phosphofructokinase; 20.8 1.1E+02 0.0036 23.8 4.0 34 9-42 172-207 (319)
106 1amu_A GRSA, gramicidin synthe 20.7 1.9E+02 0.0064 24.0 5.9 45 13-57 104-149 (563)
107 4f9i_A Proline dehydrogenase/d 20.3 1.9E+02 0.0064 26.5 6.0 81 3-94 673-765 (1026)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.9e-34 Score=242.84 Aligned_cols=200 Identities=27% Similarity=0.470 Sum_probs=166.7
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
++++|++|.+|+...+.+++.|+++++.+++++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+
T Consensus 238 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 238 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred EEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 35789999999988888999999999999999999999999999999999999999999987766778899999999999
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEeCC-CC---CCCcceEEEEcC
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLVKS-HT---MGSQDSFVISGD 155 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~-~~---~g~~Gel~i~g~ 155 (207)
++++++.+++++.++.. .+++.||+||++..++..+. ....+++|+|+|+++++|+|++ ++ +|+.|||+|+|+
T Consensus 318 ~l~~~~~~~~~~~~~~~--~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~ 395 (550)
T 3rix_A 318 PLSKEVGEAVAKRFHLP--GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395 (550)
T ss_dssp CCCHHHHHHHHHHTTCS--CCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred CCCHHHHHHHHHHcCCC--ccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCC
Confidence 99999999999999976 68999999999988877766 6778899999999999999954 44 489999999999
Q ss_pred eeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 156 EIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 156 ~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
.+ +.|||++|+.+ +.|||..+++.+|.+.+.||.++..+ ++|+||++
T Consensus 396 ~v-~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik--~~G~~v~p 451 (550)
T 3rix_A 396 MI-MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK--YKGYQVAP 451 (550)
T ss_dssp TS-CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------
T ss_pred Cc-chhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeE--ECCEEECH
Confidence 99 99999997544 35888889988999999999888875 48999875
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=8.7e-34 Score=240.65 Aligned_cols=200 Identities=27% Similarity=0.448 Sum_probs=175.8
Q ss_pred CcccccchHHHHHH-HHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEcc
Q psy9665 1 MALVPFFHGYGLLL-MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGA 79 (207)
Q Consensus 1 l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G 79 (207)
++++|++|.+++.. ++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+.+.....+++++|.+++||
T Consensus 227 l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 306 (536)
T 3ni2_A 227 LCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGG 306 (536)
T ss_dssp EECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEES
T ss_pred EEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECC
Confidence 35789999999964 78899999999999999999999999999999999999999999998877777899999999999
Q ss_pred CCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccC-----C-CCCCCccccccCCceEEEEeCC-CC---CCCcce
Q psy9665 80 APVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD-----L-DVPSSSVGKVMPSMKMKVLVKS-HT---MGSQDS 149 (207)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~-----~-~~~~~~~G~~~~~~~~~i~d~~-~~---~g~~Ge 149 (207)
+++++++.+++++.++.. ++++.||+||++.++.... . ....+++|+|+++++++|+|++ +. +|+.||
T Consensus 307 e~l~~~~~~~~~~~~~~~--~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GE 384 (536)
T 3ni2_A 307 APLGKELEDTVRAKFPQA--RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGE 384 (536)
T ss_dssp SCCCHHHHHHHHHHCTTS--EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEE
T ss_pred CCCCHHHHHHHHHHCCCC--CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccE
Confidence 999999999999999655 6999999999987765431 1 4567889999999999999954 55 489999
Q ss_pred EEEEcCeeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 150 FVISGDEIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 150 l~i~g~~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+|+|+.+ +.|||++|+.+ +.|||..+++.+|.++++||.++..+ ++|+||++
T Consensus 385 l~v~g~~v-~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik--~~G~~v~p 446 (536)
T 3ni2_A 385 ICIRGDQI-MKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIK--YKGFQVAP 446 (536)
T ss_dssp EEEESTTS-CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEE--ETTEEECH
T ss_pred EEEeCccc-chhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEE--ECCEEECH
Confidence 99999999 99999998654 34888888888999999999988885 48999875
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.8e-33 Score=236.70 Aligned_cols=198 Identities=26% Similarity=0.445 Sum_probs=174.4
Q ss_pred cccccchHHHHHH-HHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 2 ALVPFFHGYGLLL-MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 2 ~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
+++|++|.+|+.. ++.++ .|+++++.+++++..+++.++++++|+++++|++++.|.+.+.....+++++|.+++||+
T Consensus 241 ~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 241 TVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp ECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred EeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 5789999999876 56667 999999999999999999999999999999999999999887655667899999999999
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEe-CCCC---CCCcceEEEEcC
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLV-KSHT---MGSQDSFVISGD 155 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d-~~~~---~g~~Gel~i~g~ 155 (207)
++++++.+++++.|+.. .+++.||+||++..++..+. ....+++|+|+|+++++|+| ++++ +|+.|||+|+|+
T Consensus 320 ~l~~~~~~~~~~~~~~~--~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~ 397 (548)
T 2d1s_A 320 PLSKEVGEAVARRFNLP--GVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397 (548)
T ss_dssp CCCHHHHHHHHHHTTCS--CCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred cCCHHHHHHHHHHcCCC--ceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCH
Confidence 99999999999999654 59999999999987776544 56778999999999999999 5665 489999999999
Q ss_pred eeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 156 EIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 156 ~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
.+ +.|||++|+.+ +.|||..+++.+|.+.+.||.++..+ ++|+||++
T Consensus 398 ~v-~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik--~~G~~v~p 453 (548)
T 2d1s_A 398 ML-MKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK--YKGYQVPP 453 (548)
T ss_dssp TS-CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBC--BTTCCBCH
T ss_pred HH-hhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEE--ECCEEECH
Confidence 99 99999997543 35888889988999999999988875 59999975
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.3e-33 Score=236.43 Aligned_cols=201 Identities=23% Similarity=0.273 Sum_probs=165.4
Q ss_pred cccccchHHHHHHHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCC--CCCCCceeEEEEcc
Q psy9665 2 ALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVD--QYDLSSLTNIRCGA 79 (207)
Q Consensus 2 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~l~~lr~~~~~G 79 (207)
+++|++|.+++..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+..... ..+++++|.+++||
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg 305 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGA 305 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEES
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCC
Confidence 5789999999888888899999999999999999999999999999999999999998754322 26788999999999
Q ss_pred CCCCHHHHHHHHHH----hCCCcCcceeccccccccceeeccCC--CCCCCccccccCCceEEEEe-CCCC---CCCcce
Q psy9665 80 APVGKSTLDQVGER----LGLSMDSMKQGYGMTELTILVTFSDL--DVPSSSVGKVMPSMKMKVLV-KSHT---MGSQDS 149 (207)
Q Consensus 80 ~~~~~~~~~~~~~~----~~~~~~~i~~~YG~tE~g~~~~~~~~--~~~~~~~G~~~~~~~~~i~d-~~~~---~g~~Ge 149 (207)
+++++++.+++.+. ++.+.+++++.||+||++.+++..+. .....++|+|+++++++|+| ++++ +|+.||
T Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GE 385 (549)
T 3g7s_A 306 WPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGE 385 (549)
T ss_dssp SCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceE
Confidence 99999999999988 66433369999999999988777655 46778999999999999999 6666 499999
Q ss_pred EEEEcCeeeecccccCCCcCc-------------ccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 150 FVISGDEIQFAPYCRKMSLGA-------------YLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 150 l~i~g~~~~~~gy~~~~~~~~-------------~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+|+|+.+ +.|||++|+.+. .|||..+++.+|.+.+.||.++..+ ++|+||++
T Consensus 386 l~v~g~~v-~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik--~~G~~v~p 451 (549)
T 3g7s_A 386 IVIRGPNI-FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK--YKGYTIAP 451 (549)
T ss_dssp EEEESTTS-CSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC--------------C
T ss_pred EEEECcch-hhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEE--ECCEEECH
Confidence 99999999 999999987652 4888888888999999999988885 58999875
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.3e-32 Score=235.49 Aligned_cols=197 Identities=17% Similarity=0.261 Sum_probs=172.1
Q ss_pred cccccchHHHHHH-HHHHHHhCCeEEEe--CCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 2 ALVPFFHGYGLLL-MLQAICMNNKLVVL--PHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl~h~~g~~~-~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
+.+|++|..+.+. ++.++..|+++++. +.|++..+++.++++++|+++++|++++.|.+. .....++++||.+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~g 349 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVA 349 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEEC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEc
Confidence 4578888888774 78889999999998 479999999999999999999999999999886 3455678999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEeCCCC---CCCcceEEEEc
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLVKSHT---MGSQDSFVISG 154 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel~i~g 154 (207)
|++++++++++|++.++.. +++.||+||++..+...+. ....+++|+|+|+++++|+|++|+ +|+.|||+|++
T Consensus 350 Ge~l~~~~~~~~~~~~g~~---i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~ 426 (580)
T 3etc_A 350 GEPLNPEVFNRFLEFTGIK---LMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINT 426 (580)
T ss_dssp SSCCCHHHHHHHHHHHSCC---CEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred cCCCCHHHHHHHHHHhCCe---EecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEec
Confidence 9999999999999999876 9999999999877776655 677889999999999999999988 48999999997
Q ss_pred -----CeeeecccccCCCcC--------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 155 -----DEIQFAPYCRKMSLG--------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 155 -----~~~~~~gy~~~~~~~--------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+.+ +.|||++|+.+ +.|||..+++.+|.++++||.+++.+ ++|+||++
T Consensus 427 ~~g~~~~~-~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik--~~G~~I~p 487 (580)
T 3etc_A 427 MEGKPVGL-FVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIK--TSGYKVGP 487 (580)
T ss_dssp TTCCCTTC-CCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEE--ETTEEECH
T ss_pred CCCCCCee-eccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEE--ECCEEECH
Confidence 678 99999999766 35899999999999999999988885 57899875
No 6
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=5.3e-33 Score=234.55 Aligned_cols=199 Identities=17% Similarity=0.189 Sum_probs=173.5
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeCC---CCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEE
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPH---FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRC 77 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~ 77 (207)
++++|++|.+++..++.++..|+++++.+. +++..+++.++++++|++.++|++++.+++.+......++++|.+++
T Consensus 188 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~ 267 (511)
T 3e7w_A 188 LNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMF 267 (511)
T ss_dssp EECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEE
T ss_pred EEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEE
Confidence 357899999998889999999999999985 69999999999999999999999999999988777778899999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC------CCCCCccccccCCceEEEEeCCCC---CCCcc
Q psy9665 78 GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL------DVPSSSVGKVMPSMKMKVLVKSHT---MGSQD 148 (207)
Q Consensus 78 ~G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~---~g~~G 148 (207)
+|+++++++.+++++.|+.. ++++.||+||++..++.... .....++|+|+++++++|+|++|+ +|+.|
T Consensus 268 ~G~~l~~~~~~~~~~~~~~~--~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~G 345 (511)
T 3e7w_A 268 CGEVLPVSVAKALLERFPKA--KIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKG 345 (511)
T ss_dssp CSSCCCHHHHHHHHHHCTTC--EEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCE
T ss_pred ecCCCCHHHHHHHHHHCCCc--EEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCce
Confidence 99999999999999999655 69999999999876654322 345567999999999999999987 48999
Q ss_pred eEEEEcCeeeecccccCCCcC------------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 149 SFVISGDEIQFAPYCRKMSLG------------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 149 el~i~g~~~~~~gy~~~~~~~------------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
||+|+|+.+ +.|||++|+.+ +.|||..++ ++|.+.+.||.+++.+ ++|+||++
T Consensus 346 El~v~g~~v-~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik--~~G~~v~p 410 (511)
T 3e7w_A 346 EIVIAGPSV-SRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIK--LHGYRMEL 410 (511)
T ss_dssp EEEEESTTS-CCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEE--ETTEEEEH
T ss_pred EEEEecCcc-ChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEE--ECCEEeCH
Confidence 999999999 99999998644 347887777 4799999999988885 48999875
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.5e-33 Score=234.13 Aligned_cols=196 Identities=22% Similarity=0.323 Sum_probs=173.4
Q ss_pred cccccchHHHHH-HHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 2 ALVPFFHGYGLL-LMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 2 ~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
+++|++|.+|+. ..+.+++.|+++++.+.++++.+++.++ ++|+++++|+++..+++.+.....+++++|.+++||+
T Consensus 201 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~ 278 (503)
T 4fuq_A 201 HALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSA 278 (503)
T ss_dssp ECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSS
T ss_pred EeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCC
Confidence 578999999976 4778899999999999999999999998 8999999999999999988777777899999999999
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEe-CCCC---CCCcceEEEEcC
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLV-KSHT---MGSQDSFVISGD 155 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d-~~~~---~g~~Gel~i~g~ 155 (207)
++++++.++|.+.++.. +++.||+||++..+..... ....+++|+|+++++++|+| ++++ +|+.|||+|+|+
T Consensus 279 ~l~~~~~~~~~~~~~~~---~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~ 355 (503)
T 4fuq_A 279 PLLADTHREWSAKTGHA---VLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGP 355 (503)
T ss_dssp CCCHHHHHHHHHHHSCC---EEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred CCCHHHHHHHHHHhCCC---ccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECC
Confidence 99999999999999976 9999999999877554443 66778999999999999999 5565 499999999999
Q ss_pred eeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 156 EIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 156 ~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
.+ +.|||++|+.+ +.|||..+++.+|.+.+.||.++..+ ++|+||++
T Consensus 356 ~v-~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik--~~G~~v~p 411 (503)
T 4fuq_A 356 NV-FKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVI--TGGFNVYP 411 (503)
T ss_dssp TS-CCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEE--ETTEEECH
T ss_pred ch-hhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEE--ECCEEECH
Confidence 99 99999998654 34888899988999999999888775 68999875
No 8
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7e-33 Score=240.05 Aligned_cols=202 Identities=10% Similarity=0.050 Sum_probs=173.6
Q ss_pred CcccccchHHHHH-HHHHHHHhCCeEEEeCC----CCHHHHHHHHHhcCceEeeccHHHHHHHHhCCC--CCCCCCCcee
Q psy9665 1 MALVPFFHGYGLL-LMLQAICMNNKLVVLPH----FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL--VDQYDLSSLT 73 (207)
Q Consensus 1 l~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr 73 (207)
++++|++|++|+. .++.+++.|+++++.+. +++..+++.++++++|+++++|++++.|++... ....++++||
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr 381 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLR 381 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCC
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceE
Confidence 3578999999985 58899999999999874 589999999999999999999999999998754 3456789999
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC---CCCCCccccccCCceEEEEeCCCCC---CCc
Q psy9665 74 NIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL---DVPSSSVGKVMPSMKMKVLVKSHTM---GSQ 147 (207)
Q Consensus 74 ~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~---g~~ 147 (207)
.++++|+++++++++++.+.++...+.+++.||+||++..++.... ....+++|+|+++++++|+|++|++ |+.
T Consensus 382 ~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~ 461 (652)
T 1pg4_A 382 ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE 461 (652)
T ss_dssp EEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce
Confidence 9999999999999999999998322359999999999877665432 4567899999999999999999873 788
Q ss_pred ceEEEEc--CeeeecccccCCCcC-----------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 148 DSFVISG--DEIQFAPYCRKMSLG-----------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 148 Gel~i~g--~~~~~~gy~~~~~~~-----------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|||+|+| |.+ +.|||++++.+ ++|||+.+++.+|.++++||.+++. +++|.||++
T Consensus 462 GEl~i~g~~p~~-~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I--k~~G~rI~~ 529 (652)
T 1pg4_A 462 GNLVITDSWPGQ-ARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL--NVSGHRLGT 529 (652)
T ss_dssp EEEEECSCCTTC-CCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEE--EETTEEEEH
T ss_pred EEEEEccCCCch-hhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEE--EECCEEECH
Confidence 9999999 678 99999987532 4589999999999999999998887 558999875
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.4e-33 Score=239.59 Aligned_cols=199 Identities=21% Similarity=0.301 Sum_probs=170.1
Q ss_pred CcccccchHHHHHH--HHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 1 MALVPFFHGYGLLL--MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 1 l~~~Pl~h~~g~~~--~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
++++|++|.+++.. ++.+++.|+++++.+.+++..+++.++++++|++.++|+++..+++.......+++++|.+++|
T Consensus 227 l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~g 306 (539)
T 1mdb_A 227 LAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVG 306 (539)
T ss_dssp EECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEE
T ss_pred EEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEc
Confidence 35789999999874 8899999999999999999999999999999999999999999987654445678999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC--CCCCCccccccCCc-eEEEEeCCCC---CCCcceEEE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL--DVPSSSVGKVMPSM-KMKVLVKSHT---MGSQDSFVI 152 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~--~~~~~~~G~~~~~~-~~~i~d~~~~---~g~~Gel~i 152 (207)
|+++++++.+++++.++.. +++.||+||++..+..... ....+++|+|+++. +++|+|++++ +|+.|||+|
T Consensus 307 G~~l~~~~~~~~~~~~~~~---~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v 383 (539)
T 1mdb_A 307 GAKFSAEAARRVKAVFGCT---LQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLT 383 (539)
T ss_dssp SSCCCHHHHTTHHHHTCSE---EEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc---EEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEe
Confidence 9999999999999999865 9999999997543332211 22346899999764 8999999887 489999999
Q ss_pred EcCeeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 153 SGDEIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 153 ~g~~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+|+.+ +.|||++|+.+ +.|||..+++.+|.+.+.||.++..+ ++|+||++
T Consensus 384 ~g~~v-~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik--~~G~~v~p 442 (539)
T 1mdb_A 384 RGPYT-IRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN--RGGEKVAA 442 (539)
T ss_dssp ECTTS-CSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEE--CSSCEECH
T ss_pred eCccc-chhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEE--ECCEEECH
Confidence 99999 99999998544 34888889988999999999988885 69999875
No 10
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.7e-33 Score=237.03 Aligned_cols=198 Identities=20% Similarity=0.231 Sum_probs=169.5
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEcc
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGA 79 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G 79 (207)
++++|++|.+++..++.+++.|+++++.+ .+++..+++.++++++|+++++|+++..|.+.......+++++|.+++||
T Consensus 223 l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 223 LPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp EECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred EEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 35789999999877788999999999987 47999999999999999999999999999876443345678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCCC------------CCCCccccccCCceEEEEeCCCCC---
Q psy9665 80 APVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD------------VPSSSVGKVMPSMKMKVLVKSHTM--- 144 (207)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~------------~~~~~~G~~~~~~~~~i~d~~~~~--- 144 (207)
+++++++++++ +.++.. +++.||+||++.+++..... ....++|+|+|+++++|+|+++++
T Consensus 303 ~~l~~~~~~~~-~~~g~~---~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~ 378 (541)
T 1v25_A 303 SAAPRSLIARF-ERMGVE---VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPK 378 (541)
T ss_dssp SCCCHHHHHHH-HHTTCE---EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCS
T ss_pred CCCCHHHHHHH-HHhCCc---eeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCC
Confidence 99999999999 677765 99999999998877654321 134689999999999999998873
Q ss_pred --CCcceEEEEcCeeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 145 --GSQDSFVISGDEIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 145 --g~~Gel~i~g~~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
++.|||+|+||.+ +.|||++|+.+ +.|||..+++.+|.+++.||.++..+ .+|+||++
T Consensus 379 ~~~~~GEl~v~g~~v-~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik--~~G~~v~p 447 (541)
T 1v25_A 379 DGKALGEVQLKGPWI-TGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK--SGGEWISS 447 (541)
T ss_dssp SSCCCEEEEEESTTS-BSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEE--ETTEEEEH
T ss_pred CCCcceEEEEeCcch-hccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceee--eCCEEECH
Confidence 2589999999999 99999998644 34888889988999999999988885 68999875
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3e-32 Score=232.85 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=173.7
Q ss_pred cccccchHHHHH-HHHHHHHhCCeEEEeC--CCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 2 ALVPFFHGYGLL-LMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
+++|++|.+++. .++.++..|+++++.+ .+++..+++.++++++|++.++|++++.|.+.. ....+++++|.+++|
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~g 330 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTV 330 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEE
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEc
Confidence 578999999987 5888999999999987 789999999999999999999999999998863 344568899999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEeCCCC---CCCcceEEEE-
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLVKSHT---MGSQDSFVIS- 153 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel~i~- 153 (207)
|++++++++++|++.++.. +++.||+||++..+...+. ....+++|+|+++++++|+|++++ +|+.|||+|+
T Consensus 331 Ge~l~~~~~~~~~~~~g~~---i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~ 407 (570)
T 3c5e_A 331 GESLLPETLENWRAQTGLD---IRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRV 407 (570)
T ss_dssp SSCCCHHHHHHHHHHHSCC---CEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEEC
T ss_pred CCcCCHHHHHHHHHHhCCc---hhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEec
Confidence 9999999999999999875 9999999999877665544 567789999999999999999887 4899999999
Q ss_pred ----cCeeeecccccCCCcCc--------ccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 154 ----GDEIQFAPYCRKMSLGA--------YLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 154 ----g~~~~~~gy~~~~~~~~--------~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+.+ +.|||++|+.+. .|||..+++++|.+.+.||.++..+ .+|+||++
T Consensus 408 ~~~~g~~v-~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik--~~G~~V~p 468 (570)
T 3c5e_A 408 KPIRPIGI-FSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIIN--SSGYRIGP 468 (570)
T ss_dssp SSBCCTTC-CCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEE--ETTEEECH
T ss_pred cCCCCchh-hccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEE--ECCEEECH
Confidence 9999 999999986543 4888888888999999999988875 68999875
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.1e-32 Score=232.70 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=174.4
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeCC---CCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEE
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPH---FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRC 77 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~ 77 (207)
++++|++|.+++..++.+++.|+++++.+. +++..+++.++++++|++.++|+++..++........+++++|.+++
T Consensus 189 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~ 268 (512)
T 3fce_A 189 LNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLF 268 (512)
T ss_dssp EECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEE
T ss_pred EEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEE
Confidence 357899999998889999999999999985 79999999999999999999999999999887777778899999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC------CCCCCccccccCCceEEEEeCCCC---CCCcc
Q psy9665 78 GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL------DVPSSSVGKVMPSMKMKVLVKSHT---MGSQD 148 (207)
Q Consensus 78 ~G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~---~g~~G 148 (207)
+|+++++++.+++.+.|+.. ++++.||+||++..++.... .....++|+|.++++++|+|+++. +|+.|
T Consensus 269 ~G~~l~~~~~~~~~~~~~~~--~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~G 346 (512)
T 3fce_A 269 CGEVLPNEVARKLIERFPKA--TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKG 346 (512)
T ss_dssp CSSCCCHHHHHHHHHHCTTC--EEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCE
T ss_pred ecCcCCHHHHHHHHHHCCCC--EEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeE
Confidence 99999999999999999655 69999999999877654332 236678999999999999999987 48999
Q ss_pred eEEEEcCeeeecccccCCCcC------------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 149 SFVISGDEIQFAPYCRKMSLG------------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 149 el~i~g~~~~~~gy~~~~~~~------------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
||+|+||.+ +.|||++|+.+ +.|||..++ ++|.+++.||.+++.+ ++|+||+.
T Consensus 347 El~v~g~~v-~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik--~~G~~v~p 411 (512)
T 3fce_A 347 EIVIVGPSV-SVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIK--LHGYRMEL 411 (512)
T ss_dssp EEEEESTTS-CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEE--ETTEEECH
T ss_pred EEEEecccc-ChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEE--ECCEEECH
Confidence 999999999 99999998644 347887777 6799999999988885 48999875
No 13
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.1e-32 Score=229.95 Aligned_cols=199 Identities=13% Similarity=0.168 Sum_probs=168.9
Q ss_pred CcccccchHHHHHH-HHHHHHhCCeEEEe-CCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 1 MALVPFFHGYGLLL-MLQAICMNNKLVVL-PHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 1 l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
++++|++|.+|+.. ++.++..|+++++. +.+++..+++.++++++|+++++|+++..+++..........++|.+++|
T Consensus 229 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 308 (529)
T 2v7b_A 229 FSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSA 308 (529)
T ss_dssp EESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEEC
T ss_pred EEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEc
Confidence 35789999999874 67889999999988 57899999999999999999999999999988765433312489999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEeCCCC---CCCcceEEEEc
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLVKSHT---MGSQDSFVISG 154 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel~i~g 154 (207)
|+++++++.+++++.++.. +++.||+||++.++..... ....+++|+|+++++++|+|++++ +|+.|||+|+|
T Consensus 309 Ge~l~~~~~~~~~~~~g~~---i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g 385 (529)
T 2v7b_A 309 GEALPREIGERFTAHFGCE---ILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKG 385 (529)
T ss_dssp SSCCCHHHHHHHHHHHSCC---EEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHhCCc---eeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEec
Confidence 9999999999999999876 9999999999776655544 556789999999999999999887 48999999999
Q ss_pred CeeeecccccCCCcCc--------ccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 155 DEIQFAPYCRKMSLGA--------YLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 155 ~~~~~~gy~~~~~~~~--------~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+.+ +.|||++++.+. .|||..+++.+|.+.+.||.++..+ ++|.||++
T Consensus 386 ~~~-~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik--~~G~~v~p 441 (529)
T 2v7b_A 386 PSA-AVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLK--VSGQYVSP 441 (529)
T ss_dssp TTC-CCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC------CBCH
T ss_pred CCc-ccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEE--ECCEEECH
Confidence 999 999999987553 4888888888999999999888874 58999875
No 14
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.6e-32 Score=228.24 Aligned_cols=193 Identities=18% Similarity=0.297 Sum_probs=169.8
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
++++|++|.+|+..++.+++.|+++++.+++++..+++.++++++|++.++|+++..|.+...... .++|.+++||+
T Consensus 208 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~ 284 (501)
T 3ipl_A 208 LSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGA 284 (501)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSS
T ss_pred EEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCC
Confidence 357899999999888899999999999999999999999999999999999999999988754332 28999999999
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC---CCCCCccccccCCceEEEEeCCCCCCCcceEEEEcCee
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL---DVPSSSVGKVMPSMKMKVLVKSHTMGSQDSFVISGDEI 157 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~g~~Gel~i~g~~~ 157 (207)
++++++.+++++ ++.. +++.||+||++..+..... .....++|+|+++++++|+|++ +++.|||+|+|+.+
T Consensus 285 ~l~~~~~~~~~~-~~~~---~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~--~~~~GEl~v~g~~~ 358 (501)
T 3ipl_A 285 KLSATMIETALQ-YNLP---IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN--KEGHGELMIKGANV 358 (501)
T ss_dssp CCCHHHHHHHHH-TTCC---EEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC--SSCCEEEEEESTTS
T ss_pred CCCHHHHHHHHH-hCCC---EeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC--CCCccEEEEeccch
Confidence 999999999986 5765 9999999999876554433 3467889999999999999986 57789999999999
Q ss_pred eecccccCCCcC-------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 158 QFAPYCRKMSLG-------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 158 ~~~gy~~~~~~~-------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+.|||++++.+ +.|||..+++.+|.+++.||.++..+ .+|+||++
T Consensus 359 -~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik--~~G~~v~p 410 (501)
T 3ipl_A 359 -MNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLII--SGGENIYP 410 (501)
T ss_dssp -CSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEEECCCCEE--CSSCEECH
T ss_pred -hhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEccccceEE--ECCEEECH
Confidence 99999999877 45899999999999999999988875 78999875
No 15
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.98 E-value=2.5e-32 Score=230.75 Aligned_cols=198 Identities=18% Similarity=0.225 Sum_probs=172.6
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
++++|++|.+++...+.+++.|+++++.+.+++..+++.++++++|++.++|+++..|.+.+.....+++++|.+++||+
T Consensus 215 l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 215 LLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred EEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 35789999999987566656999999999999999999999999999999999999999876655667899999999999
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC---CCCCCccccccCCceEEEEeCCCCC--CCcceEEEEcC
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL---DVPSSSVGKVMPSMKMKVLVKSHTM--GSQDSFVISGD 155 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~--g~~Gel~i~g~ 155 (207)
++++++.+++.+. +. ++++.||+||++..++.... ....+++|+|.++++++++|+++.+ ...|||+|+|+
T Consensus 295 ~l~~~~~~~~~~~-~~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~ 370 (517)
T 3r44_A 295 PMPEALIKIYAAK-NI---EVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSD 370 (517)
T ss_dssp CCCHHHHHHHHHT-TC---EEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEET
T ss_pred CCCHHHHHHHHhc-CC---cEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCc
Confidence 9999999999876 65 49999999999877665443 4567889999999999999998872 33899999999
Q ss_pred eeeecccccCCCcCc--------ccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 156 EIQFAPYCRKMSLGA--------YLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 156 ~~~~~gy~~~~~~~~--------~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
.+ +.|||++|+.+. .|||..+++.+|.+++.||.++..+ ++|+||++
T Consensus 371 ~v-~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik--~~G~~v~p 425 (517)
T 3r44_A 371 IL-LKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMII--SGGENVYP 425 (517)
T ss_dssp TS-CSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEE--ETTEEECH
T ss_pred ch-hhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEE--ECCEEECH
Confidence 99 999999997653 4899999999999999999988885 68999875
No 16
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.98 E-value=6e-32 Score=228.51 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=170.0
Q ss_pred cccccchHHHHHHHHHHHHhCCeEEEeCCC---CHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 2 ALVPFFHGYGLLLMLQAICMNNKLVVLPHF---DGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
+.+|++|.+++..++.++..|+++++.+.+ ++..+++.+++++++++.++|+++..+.........+++++|.++++
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 272 (521)
T 3l8c_A 193 AQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFD 272 (521)
T ss_dssp CCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEEC
T ss_pred ecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEe
Confidence 467899999988888999999999999854 89999999999999999999999999998877667788999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC------CCCCCccccccCCceEEEEeCCCC---CCCcce
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL------DVPSSSVGKVMPSMKMKVLVKSHT---MGSQDS 149 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Ge 149 (207)
|+++++++.+++.+.++.. ++++.||+||++..++.... .....++|+|+++++++|+|++|. +|+.||
T Consensus 273 G~~l~~~~~~~~~~~~~~~--~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GE 350 (521)
T 3l8c_A 273 GEELTVSTARKLFERFPSA--KIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGE 350 (521)
T ss_dssp SSCCCHHHHHHHHHHCTTC--EEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEE
T ss_pred cccCCHHHHHHHHHHCCCc--eEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceE
Confidence 9999999999999999555 69999999999876554322 235678999999999999999987 489999
Q ss_pred EEEEcCeeeecccccCCCcC------------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 150 FVISGDEIQFAPYCRKMSLG------------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 150 l~i~g~~~~~~gy~~~~~~~------------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+|+||.+ +.|||++|+.+ +.|||..+++++|.+++.||.++..+ ++|+||+.
T Consensus 351 l~v~g~~v-~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~--~~G~~v~p 415 (521)
T 3l8c_A 351 IIVTGPAV-SKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIK--YAGYRIEL 415 (521)
T ss_dssp EEEESTTS-CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-------CBH
T ss_pred EEeccccc-ChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEe--ECCEEeCH
Confidence 99999999 99999988654 34889999999999999999988885 47999875
No 17
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.97 E-value=1.6e-32 Score=233.34 Aligned_cols=199 Identities=19% Similarity=0.232 Sum_probs=163.3
Q ss_pred CcccccchHHHHHH--HHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 1 MALVPFFHGYGLLL--MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 1 l~~~Pl~h~~g~~~--~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
++++|++|.+++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......+++++|.+++|
T Consensus 236 l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~g 315 (544)
T 3o83_A 236 LCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVG 315 (544)
T ss_dssp EECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEE
T ss_pred EEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEc
Confidence 35789999999873 8889999999999999999999999999999999999999999988766556678899999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC--CCCCCcccccc-CCceEEEEeCCCC---CCCcceEEE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL--DVPSSSVGKVM-PSMKMKVLVKSHT---MGSQDSFVI 152 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~--~~~~~~~G~~~-~~~~~~i~d~~~~---~g~~Gel~i 152 (207)
|+++++++.+++++.++.. +++.||+||++..+..... .....++|+|+ ++++++|+|++++ +|+.|||+|
T Consensus 316 G~~l~~~~~~~~~~~~~~~---~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v 392 (544)
T 3o83_A 316 GASFPESLARQVPEVLNCK---LQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLAT 392 (544)
T ss_dssp SSCCCHHHHTHHHHHHCSE---EEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc---EEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEE
Confidence 9999999999999999865 9999999998755543322 23346789996 8999999999887 499999999
Q ss_pred EcCeeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 153 SGDEIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 153 ~g~~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+|+.+ +.|||++|+.+ +.|||..+++.+|.+++.||.++..+ .+|+||++
T Consensus 393 ~g~~v-~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik--~~G~~v~p 451 (544)
T 3o83_A 393 RGPYT-FCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQIN--RGGEKIAS 451 (544)
T ss_dssp ECTTS-CSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------
T ss_pred ecCCc-chhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEE--eCCEEECH
Confidence 99999 99999997544 34888889998999999999888885 78999875
No 18
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.97 E-value=5e-32 Score=231.42 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=158.6
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeC--CCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
++++|++|..+...++.+++.|+++++.+ .+++..+++.++++++|++.++|++++.|.+... .+++++|.+++|
T Consensus 258 l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~g 334 (570)
T 4gr5_A 258 LQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITG 334 (570)
T ss_dssp EECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEE
T ss_pred EEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEe
Confidence 35789999877777889999999999987 5799999999999999999999999999987642 357899999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-----CCCCCccccccCCceEEEEeCCCC---CCCcceE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-----DVPSSSVGKVMPSMKMKVLVKSHT---MGSQDSF 150 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-----~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel 150 (207)
|+++++++.+++.+.++.. ++++.||+||++.+.+.... .....++|+|+++++++|+|++++ +|+.|||
T Consensus 335 G~~l~~~~~~~~~~~~~~~--~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl 412 (570)
T 4gr5_A 335 GEPASVPHVAKARRDHPAL--RLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGEL 412 (570)
T ss_dssp SSCCCHHHHHHHHHHCTTC--EEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEE
T ss_pred cccCCHHHHHHHHHhCCCc--EEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEE
Confidence 9999999999999998655 69999999999877654432 334567999999999999999887 4899999
Q ss_pred EEEcCeeeecccccCCCcC-----------------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 151 VISGDEIQFAPYCRKMSLG-----------------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 151 ~i~g~~~~~~gy~~~~~~~-----------------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+|+|+.+ +.|||++|+.+ +.|||..+++.+|.++++||.++..+ ++|+||+.
T Consensus 413 ~v~g~~v-~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik--~~G~~v~p 481 (570)
T 4gr5_A 413 YVAGAGL-AHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVK--IRGFRVEP 481 (570)
T ss_dssp EEEETTC-CCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------
T ss_pred EEeeccc-chhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEE--ECcEEeCH
Confidence 9999999 99999988543 35888889998999999999888875 48999875
No 19
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.97 E-value=6.1e-32 Score=227.73 Aligned_cols=197 Identities=19% Similarity=0.244 Sum_probs=170.5
Q ss_pred CcccccchHHHHH-HHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCC--CCCCCCCceeEEEE
Q psy9665 1 MALVPFFHGYGLL-LMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL--VDQYDLSSLTNIRC 77 (207)
Q Consensus 1 l~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~ 77 (207)
++++|++|.+|+. .++.++..|+++++.+.+++..+++.++++++|+++++|++++.|.+... ....+++++|.+++
T Consensus 200 l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp EECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred EeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 3578999999985 58899999999999999999999999999999999999999999987642 23457899999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCCCCCCCccccccCCceEEEEeCCC---C---CCCcceEE
Q psy9665 78 GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKVMPSMKMKVLVKSH---T---MGSQDSFV 151 (207)
Q Consensus 78 ~G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~---~---~g~~Gel~ 151 (207)
||+++++++.+++++.++.. +++.||+||++... ... ....+++|+|.++++++++|+++ + +|+.|||+
T Consensus 280 gG~~l~~~~~~~~~~~~~~~---~~~~YG~TE~~~~~-~~~-~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~ 354 (504)
T 1t5h_X 280 AGATMPDAVLETVHQHLPGE---KVNIYGTTEAMNSL-YMR-QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELI 354 (504)
T ss_dssp CCTTCCHHHHHHHHHHCCSE---EEEEEEETTTEEEE-EEE-SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEE
T ss_pred cCCcCCHHHHHHHHHhcCcc---eeeeeccccccccc-ccc-CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEE
Confidence 99999999999999999865 99999999994322 221 35568899999999999999887 4 48899999
Q ss_pred EE-cCeeeecccccCCCcC--------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 152 IS-GDEIQFAPYCRKMSLG--------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 152 i~-g~~~~~~gy~~~~~~~--------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+ |+.+ +.|||++|+.+ +.|||..+++.+|.+.+.||.++..+ ++|+||++
T Consensus 355 v~gg~~~-~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik--~~G~~v~p 414 (504)
T 1t5h_X 355 VAASDSA-FVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII--SGGENIHP 414 (504)
T ss_dssp EECCTTS-CCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEE--ETTEEECH
T ss_pred EeCCcee-eceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEE--ECCEEECH
Confidence 99 8998 99999999765 45899999999999999999988885 68999875
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.97 E-value=7.3e-32 Score=232.38 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=170.5
Q ss_pred cccccchHHHHHHHHHHHHhCCeEEEeC--CCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEcc
Q psy9665 2 ALVPFFHGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGA 79 (207)
Q Consensus 2 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G 79 (207)
+++|++|.+++..++.+++.|+++++.+ .+++..+++.++++++|++.++|++++.+.+.. ..+++++|.+++||
T Consensus 209 ~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gG 285 (620)
T 4dg8_A 209 VNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGG 285 (620)
T ss_dssp ECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEES
T ss_pred EECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEe
Confidence 5789999999988999999999999975 689999999999999999999999999998753 34578999999999
Q ss_pred CCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-----CCCCCccccccCCceEEEEeCCCC----CCCcceE
Q psy9665 80 APVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-----DVPSSSVGKVMPSMKMKVLVKSHT----MGSQDSF 150 (207)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-----~~~~~~~G~~~~~~~~~i~d~~~~----~g~~Gel 150 (207)
+++++++.+++.+.++.. +++|.||+||++..++.... .....++|+|+++++++|+|+++. +|+.|||
T Consensus 286 e~l~~~~~~~~~~~~~~~--~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl 363 (620)
T 4dg8_A 286 DILSVPHVRRALLRHPRL--HLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEI 363 (620)
T ss_dssp SCCCHHHHHHHHHHCTTC--EEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEE
T ss_pred CcCCHHHHHHHHHhCCCe--EEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEE
Confidence 999999999998887655 69999999999876554322 345678999999999999999886 3889999
Q ss_pred EEEcCeeeecccccCCCcC----------------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 151 VISGDEIQFAPYCRKMSLG----------------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 151 ~i~g~~~~~~gy~~~~~~~----------------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+|+|+.+ +.|||++|+.+ ++|||..+++.+|.+.++||.++..+ ++|+||++
T Consensus 364 ~i~G~~v-~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik--~~G~ri~~ 431 (620)
T 4dg8_A 364 VAFGAGL-AQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVK--LNGYRLDL 431 (620)
T ss_dssp EEEETTC-CSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEE--ETTEEEEH
T ss_pred EEecccc-ccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEE--ECCEEcCH
Confidence 9999999 99999998653 45899999999999999999888875 48999875
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.97 E-value=1.4e-31 Score=232.32 Aligned_cols=202 Identities=11% Similarity=0.078 Sum_probs=172.0
Q ss_pred CcccccchHHHHH-HHHHHHHhCCeEEEeCC----CCHHHHHHHHHhcCceEeeccHHHHHHHHhCCC--CCCCCCCcee
Q psy9665 1 MALVPFFHGYGLL-LMLQAICMNNKLVVLPH----FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL--VDQYDLSSLT 73 (207)
Q Consensus 1 l~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr 73 (207)
+++.|++|++|+. .++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr 387 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLR 387 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCC
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceE
Confidence 3578999999985 58899999999999873 589999999999999999999999999988754 3456789999
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccC--C--CCCCCccccccCCceEEEEeC-CCCC----
Q psy9665 74 NIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD--L--DVPSSSVGKVMPSMKMKVLVK-SHTM---- 144 (207)
Q Consensus 74 ~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~--~--~~~~~~~G~~~~~~~~~i~d~-~~~~---- 144 (207)
.++++|+++++++++++.+.++...+.+++.||+||++..++... . ....+++|+|+++++++|+|+ +|++
T Consensus 388 ~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~ 467 (663)
T 1ry2_A 388 CLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTS 467 (663)
T ss_dssp EEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECS
T ss_pred EEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCC
Confidence 999999999999999999998832235999999999987655442 1 456789999999999999998 7763
Q ss_pred CCcceEEEEcC--eeeecccccCCCcC-----------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 145 GSQDSFVISGD--EIQFAPYCRKMSLG-----------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 145 g~~Gel~i~g~--~~~~~gy~~~~~~~-----------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+.|||+|+|+ .+ +.|||++|+.+ ++|||+.+++.+|.+++.||.+++. +++|.||++
T Consensus 468 g~~Gel~i~g~~p~~-~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I--k~~G~rI~~ 538 (663)
T 1ry2_A 468 HAEGVLAVKAAWPSF-ARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV--NVSGHRLST 538 (663)
T ss_dssp SCEEEEEESSCCTTS-CCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCB--CSSSCCBCH
T ss_pred CcceEEEEecCCCch-hcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEE--EECCEEcCH
Confidence 78899999994 78 99999998532 4589999999999999999988777 568999875
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.97 E-value=1.6e-31 Score=240.66 Aligned_cols=199 Identities=27% Similarity=0.440 Sum_probs=166.6
Q ss_pred cccccchHHHHHH-HHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 2 ALVPFFHGYGLLL-MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 2 ~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
+++|++|.+++.. ++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+.......+++++|.+++||+
T Consensus 275 ~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 275 CVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp ECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSC
T ss_pred EECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCC
Confidence 5789999999974 788899999999999999999999999999999999999999999987766778899999999999
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccC-----C-CCCCCccccccCCceEEEEeCC-CC---CCCcceE
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD-----L-DVPSSSVGKVMPSMKMKVLVKS-HT---MGSQDSF 150 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~-----~-~~~~~~~G~~~~~~~~~i~d~~-~~---~g~~Gel 150 (207)
++++++.+++++.|+.. ++++.||+||++.+++... . ....+++|+|+++++++|+|++ ++ +|+.|||
T Consensus 355 ~l~~~~~~~~~~~~~~~--~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl 432 (979)
T 3tsy_A 355 PLGKELEDAVNAKFPNA--KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432 (979)
T ss_dssp CCCSSHHHHHHHHCTTC--EEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEE
T ss_pred CCCHHHHHHHHHHCCCC--eEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEE
Confidence 99999999999999655 6999999999997765432 1 4567889999999999999955 54 4899999
Q ss_pred EEEcCeeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 151 VISGDEIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 151 ~i~g~~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+|+|+.+ +.|||++|+.+ ++|||..+++.+|.++++||.++..+ ++|+||++
T Consensus 433 ~i~g~~v-~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik--~~G~~v~~ 493 (979)
T 3tsy_A 433 CIRGHQI-MKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIK--YKGFQVAP 493 (979)
T ss_dssp EEESTTS-CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------
T ss_pred EEECCCc-cccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEE--ECCEEECH
Confidence 9999999 99999998654 34888888888999999999988884 48999875
No 23
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.97 E-value=4.5e-31 Score=222.56 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=165.9
Q ss_pred cccccchHHHHH-HHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCC---CCCCCCceeEEEE
Q psy9665 2 ALVPFFHGYGLL-LMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV---DQYDLSSLTNIRC 77 (207)
Q Consensus 2 ~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---~~~~l~~lr~~~~ 77 (207)
+.+|++|.+|+. .++.++..|+++++.+++++..+++.+ ++++|+++++|+++..+.+.... ...+++++|.+++
T Consensus 201 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~ 279 (505)
T 3nyq_A 201 QGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVS 279 (505)
T ss_dssp ECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEE
T ss_pred EeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEE
Confidence 568999999987 488999999999999999999999999 88999999999999999873221 1235678999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEeCCCCC------CCcceE
Q psy9665 78 GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLVKSHTM------GSQDSF 150 (207)
Q Consensus 78 ~G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~------g~~Gel 150 (207)
||+++++++.+++.+.++.. +++.||+||++..+..... ....+++|+|+++++++|+|+++.+ |+.|||
T Consensus 280 gg~~l~~~~~~~~~~~~~~~---~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl 356 (505)
T 3nyq_A 280 GSAALPVHDHERIAAATGRR---VIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEI 356 (505)
T ss_dssp CSSCCCHHHHHHHHHHHSCC---CEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEE
T ss_pred CCCCCCHHHHHHHHHhcCCe---eecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEE
Confidence 99999999999999999876 9999999999877766555 6677899999999999999998873 688999
Q ss_pred EEEcCeeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCc-cccccccCCCcccc
Q psy9665 151 VISGDEIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGS-QSCEENLGADNISL 205 (207)
Q Consensus 151 ~i~g~~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~-~~~~~~~~~~~~s~ 205 (207)
+|+|+.+ +.|||++|+.+ ++|||..+++.+|.+.+.||.+ ++. ..+|+||++
T Consensus 357 ~v~g~~v-~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~i--k~~G~~v~~ 418 (505)
T 3nyq_A 357 QVRGPNL-FTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLI--KSGGYKIGA 418 (505)
T ss_dssp EEESTTS-CCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCE--EETTEEECH
T ss_pred EEecCch-hhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceE--EeCCEEECH
Confidence 9999999 99999997544 4588999999899999999964 656 568999875
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.97 E-value=1.3e-30 Score=219.77 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=156.8
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
++++|++|.+|+...+.+++.|++.++...+++..+++.++++++|++.++|+++..+++.. ...+++++|.++.+|+
T Consensus 205 l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDT 282 (509)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECC
T ss_pred EEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCC
Confidence 35789999999987777666777777777999999999999999999999999999998876 3456789999999998
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCCCCCCCccccccCCceEEEEeCCCC---CCCcceEEEEcCee
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKVMPSMKMKVLVKSHT---MGSQDSFVISGDEI 157 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel~i~g~~~ 157 (207)
+ ++.+++.+.++.. ++++.||+||++.+++..+.......+|+|+++++++|+|++++ +|+.|||+|+|+.+
T Consensus 283 ~---~~~~~~~~~~~~~--~~~~~YG~TE~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~ 357 (509)
T 3ivr_A 283 P---ETIERFEATCPNA--TFWATFGQSETSGLSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTV 357 (509)
T ss_dssp H---HHHHHHHHHCTTC--EEEEEEEEGGGTEEEEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTS
T ss_pred h---HHHHHHHHhcCCC--eEEcccCccccccccccCccccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCc
Confidence 7 8899999998545 69999999999987766544333455999999999999999987 48999999999999
Q ss_pred eecccccCCCcCc--------ccCCcEEEcCeeEEEEEecC--ccccccccCCCcccc
Q psy9665 158 QFAPYCRKMSLGA--------YLCHWLKLKGKQTVLVLGFG--SQSCEENLGADNISL 205 (207)
Q Consensus 158 ~~~gy~~~~~~~~--------~~~d~~~~~~~~~~~i~grg--~~~~~~~~~~~~~s~ 205 (207)
+.|||++|+.+. .|||..+++.+|.+++.||. +++. .++|+||++
T Consensus 358 -~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~i--k~~G~~v~p 412 (509)
T 3ivr_A 358 -FKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELI--KTGGENVYP 412 (509)
T ss_dssp -CCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------
T ss_pred -cccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeE--EECCEEECH
Confidence 999999996653 48999999999999999998 5555 468999875
No 25
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.97 E-value=7.8e-31 Score=223.76 Aligned_cols=190 Identities=16% Similarity=0.203 Sum_probs=162.3
Q ss_pred cccccchHHHHHHHHHHHHhCCeEEEeCC---CCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 2 ALVPFFHGYGLLLMLQAICMNNKLVVLPH---FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
+++|++|.+++..++.+++.|+++++.+. +++..+++.++++++|++.++|+++..+... .++++|.+++|
T Consensus 228 ~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~g 301 (563)
T 1amu_A 228 QFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITA 301 (563)
T ss_dssp ECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEE
T ss_pred EeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEE
Confidence 57899999998888899999999999885 6999999999999999999999998776432 35789999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC----CCCCCccccccCCceEEEEeCCCC---CCCcceEE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL----DVPSSSVGKVMPSMKMKVLVKSHT---MGSQDSFV 151 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~----~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel~ 151 (207)
|++++++++++|.+. . .+++.||+||++.+++.... .....++|+|+++++++|+|++++ +|+.|||+
T Consensus 302 G~~l~~~~~~~~~~~---~--~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~ 376 (563)
T 1amu_A 302 GSATSPSLVNKWKEK---V--TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELC 376 (563)
T ss_dssp SSCCCHHHHHHHTTT---S--EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEE
T ss_pred EecCCHHHHHHHHhC---C--eEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEE
Confidence 999999999998764 2 59999999999876554322 235568999999999999999887 48999999
Q ss_pred EEcCeeeecccccCCCcC---------------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 152 ISGDEIQFAPYCRKMSLG---------------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 152 i~g~~~~~~gy~~~~~~~---------------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+|+.+ +.|||++|+.+ +.|||..+++.+|.+++.||.++..+ ++|+||++
T Consensus 377 v~g~~v-~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik--~~G~~V~p 442 (563)
T 1amu_A 377 IGGEGL-ARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVK--IRGHRVEL 442 (563)
T ss_dssp EEETTC-CCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEE--ETTEEEEH
T ss_pred Eechhh-ChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEE--ECCEEeCH
Confidence 999999 99999998533 34788888888999999999988885 59999875
No 26
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.97 E-value=1.1e-30 Score=224.90 Aligned_cols=198 Identities=19% Similarity=0.259 Sum_probs=169.6
Q ss_pred cccccchHHHHHH--HHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCC--CCCCCCceeEEEE
Q psy9665 2 ALVPFFHGYGLLL--MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV--DQYDLSSLTNIRC 77 (207)
Q Consensus 2 ~~~Pl~h~~g~~~--~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~~~~ 77 (207)
+++|++|.+++.. ++.+++.|+++++.+.+++..+++.++++++|++.++|+++..+.+.... ...+++++|.+++
T Consensus 230 ~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~ 309 (617)
T 3rg2_A 230 CAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQV 309 (617)
T ss_dssp ECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEE
T ss_pred EeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEE
Confidence 5789999999873 88999999999999999999999999999999999999999998764322 2346889999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC--CCCCCcccccc-CCceEEEEeCCCC---CCCcceEE
Q psy9665 78 GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL--DVPSSSVGKVM-PSMKMKVLVKSHT---MGSQDSFV 151 (207)
Q Consensus 78 ~G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~--~~~~~~~G~~~-~~~~~~i~d~~~~---~g~~Gel~ 151 (207)
||+++++++.+++.+.++.. +++.||+||++..+..... .....++|+|+ ++++++|+|++++ +|+.|||+
T Consensus 310 gGe~l~~~~~~~~~~~~~~~---~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~ 386 (617)
T 3rg2_A 310 GGARLSATLAARIPAEIGCQ---LQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLM 386 (617)
T ss_dssp ESSCCCHHHHHHHHHHTCSE---EEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred cCCcCCHHHHHHHHHHhCCc---EEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEE
Confidence 99999999999999998865 9999999999865544332 22335789997 7889999999988 49999999
Q ss_pred EEcCeeeecccccCCCcC---------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 152 ISGDEIQFAPYCRKMSLG---------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 152 i~g~~~~~~gy~~~~~~~---------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|+|+.+ +.|||++|+.+ ++|||..+++.+|.+.++||.++..+ ++|.||++
T Consensus 387 i~G~~v-~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~ik--i~G~ri~~ 446 (617)
T 3rg2_A 387 TRGPYT-FRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQIN--RGGEKIAA 446 (617)
T ss_dssp EECSSS-CSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEE--ETTEEEEH
T ss_pred ecCccc-cchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEE--ECCEEeCH
Confidence 999999 99999998654 35899999999999999999988885 68999875
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.97 E-value=2.3e-30 Score=220.66 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=154.9
Q ss_pred cccccchHHHHHHHHHHHHhCCeEEEeCCCC-HHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEccC
Q psy9665 2 ALVPFFHGYGLLLMLQAICMNNKLVVLPHFD-GHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80 (207)
Q Consensus 2 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G~ 80 (207)
+..|++|..++..++.++..|+++++.+.+. ++.+++.++++++|++.++|++++.+... ..+++++|.+++||+
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 229 CLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGE 304 (562)
T ss_dssp CCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESS
T ss_pred EecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecC
Confidence 4567888888777888999999999988654 67889999999999999999998887443 346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC--CCCCCccccccCCceEEEEeCCCC----CCCcceEEEEc
Q psy9665 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL--DVPSSSVGKVMPSMKMKVLVKSHT----MGSQDSFVISG 154 (207)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~----~g~~Gel~i~g 154 (207)
++++++.+++++.++.. +++.||+||++..+..... .....++|+|+++++++++|+++. +|+.|||+|+|
T Consensus 305 ~l~~~~~~~~~~~~~~~---~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g 381 (562)
T 3ite_A 305 KMTPRTQQIWSSSDRVA---LVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEG 381 (562)
T ss_dssp CCCHHHHHHHTTCSSCE---EEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEES
T ss_pred CCCHHHHHHHhhCCCcE---EEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEec
Confidence 99999999999877755 9999999999876555433 556778999999999999997644 48999999999
Q ss_pred CeeeecccccCCCcCc----------ccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 155 DEIQFAPYCRKMSLGA----------YLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 155 ~~~~~~gy~~~~~~~~----------~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+.+ +.|||++|+.+. .|||..+++.+|.++++||.++++ +++|+||++
T Consensus 382 ~~v-~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~I--k~~G~~v~p 439 (562)
T 3ite_A 382 SLV-ANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQV--KVRGQRLEL 439 (562)
T ss_dssp TTS-CCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC---------------
T ss_pred ccc-chhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEE--eECcEEECH
Confidence 999 999999997753 488888888899999999988887 458999875
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.96 E-value=9.1e-30 Score=217.25 Aligned_cols=199 Identities=21% Similarity=0.222 Sum_probs=167.3
Q ss_pred CcccccchHHHHHH-HHHHHHhCCeEEEeCC----CCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCC---CCCCCCce
Q psy9665 1 MALVPFFHGYGLLL-MLQAICMNNKLVVLPH----FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV---DQYDLSSL 72 (207)
Q Consensus 1 l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---~~~~l~~l 72 (207)
++++|++|.+|+.. ++.++..|+++++.+. ++|..+++.++++++|++.++|+++..+.+.... ...+++++
T Consensus 222 l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~l 301 (576)
T 3gqw_A 222 VSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCW 301 (576)
T ss_dssp EECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTC
T ss_pred EEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhh
Confidence 35789999999975 7778999999999873 6899999999999999999999999888765432 34678999
Q ss_pred eEEEEccCCCCHHHHHHHHHHhC-----CCcCcceeccccccccceeeccCC-CC-------------------------
Q psy9665 73 TNIRCGAAPVGKSTLDQVGERLG-----LSMDSMKQGYGMTELTILVTFSDL-DV------------------------- 121 (207)
Q Consensus 73 r~~~~~G~~~~~~~~~~~~~~~~-----~~~~~i~~~YG~tE~g~~~~~~~~-~~------------------------- 121 (207)
|.+++||++++++++++|.+.++ .. ++++.||+||++.+++.... ..
T Consensus 302 r~~~~gg~~l~~~~~~~~~~~~~~~~~~~~--~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 379 (576)
T 3gqw_A 302 RVAGIGAEPISAEQLHQFAECFRQVNFDNK--TFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETR 379 (576)
T ss_dssp CEEEECSSCCCHHHHHHHHHHHGGGTCCGG--GEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCC
T ss_pred HhhhccCccCCHHHHHHHHHHHhhcCCCcc--cccccCCcccccceeecccccCCccccccchhhhcccCcccccCcccc
Confidence 99999999999999999999984 23 59999999999988775432 10
Q ss_pred ---CCCccccccCCceEEEEeCCCC---CCCcceEEEEcCeeeecccccCCCcC--------cccCCcEEEcCeeEEEEE
Q psy9665 122 ---PSSSVGKVMPSMKMKVLVKSHT---MGSQDSFVISGDEIQFAPYCRKMSLG--------AYLCHWLKLKGKQTVLVL 187 (207)
Q Consensus 122 ---~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel~i~g~~~~~~gy~~~~~~~--------~~~~d~~~~~~~~~~~i~ 187 (207)
...++|+|+|+++++|+|++++ +|+.|||+|+|+.+ +.|||++++.+ +.|||..++ .+|.++++
T Consensus 380 ~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~-~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~ 457 (576)
T 3gqw_A 380 AVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISGPSL-MSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVT 457 (576)
T ss_dssp CEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEESTTS-CCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEE
T ss_pred CccceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeCccc-cccccCCccccccccCCCeeeccceEEE-ECCEEEEE
Confidence 1127899999999999999887 48999999999999 99999998544 458998888 68999999
Q ss_pred ecCccccccccCCCcccc
Q psy9665 188 GFGSQSCEENLGADNISL 205 (207)
Q Consensus 188 grg~~~~~~~~~~~~~s~ 205 (207)
||.++..+ ++|+||++
T Consensus 458 GR~dd~ik--~~G~~v~p 473 (576)
T 3gqw_A 458 GRIKDLII--IRGRNIWP 473 (576)
T ss_dssp EETTTCEE--ETTEEECH
T ss_pred ecCcceEE--ECCEEECH
Confidence 99988884 58999875
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.96 E-value=2.6e-30 Score=221.33 Aligned_cols=199 Identities=19% Similarity=0.193 Sum_probs=164.8
Q ss_pred CcccccchHHHHHH-HHHHHHhCCeEEEeCCC----CHHHHHHHHHhcCceEeeccHHHHHHHHhCC---CCCCCCCCce
Q psy9665 1 MALVPFFHGYGLLL-MLQAICMNNKLVVLPHF----DGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP---LVDQYDLSSL 72 (207)
Q Consensus 1 l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~l~~l 72 (207)
++++|++|.+|+.. ++.+++.|+++++.+++ +|..+++.++++++|++.++|+++..+.+.. .....+++++
T Consensus 212 l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~l 291 (590)
T 3kxw_A 212 FSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSW 291 (590)
T ss_dssp EECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTC
T ss_pred EEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhh
Confidence 36789999999985 88999999999999865 8999999999999999999999999987652 2345678999
Q ss_pred eEEEEccCCCCHHHHHHHHHHhCC---CcCcceeccccccccceeeccCC----------------------------CC
Q psy9665 73 TNIRCGAAPVGKSTLDQVGERLGL---SMDSMKQGYGMTELTILVTFSDL----------------------------DV 121 (207)
Q Consensus 73 r~~~~~G~~~~~~~~~~~~~~~~~---~~~~i~~~YG~tE~g~~~~~~~~----------------------------~~ 121 (207)
|.+++||+++++++.++|.+.|+. ...++++.||+||++..++.... ..
T Consensus 292 r~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (590)
T 3kxw_A 292 VTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSY 371 (590)
T ss_dssp CEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCE
T ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcc
Confidence 999999999999999999999842 12259999999999988765321 11
Q ss_pred CCCccccccCCceEEEEeCC-CC---CCCcceEEEEcCeeeecccccCCCcC-----------------cccCCcEEEcC
Q psy9665 122 PSSSVGKVMPSMKMKVLVKS-HT---MGSQDSFVISGDEIQFAPYCRKMSLG-----------------AYLCHWLKLKG 180 (207)
Q Consensus 122 ~~~~~G~~~~~~~~~i~d~~-~~---~g~~Gel~i~g~~~~~~gy~~~~~~~-----------------~~~~d~~~~~~ 180 (207)
...++|+|+++ ++|+|++ +. +|+.|||+|+|+.+ +.|||++|+.+ +.|||..+++
T Consensus 372 ~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v-~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d- 447 (590)
T 3kxw_A 372 KLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSV-AKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH- 447 (590)
T ss_dssp EEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTS-CCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-
T ss_pred eEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcc-cccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-
Confidence 23578999987 8889987 44 48999999999999 99999998543 3588888888
Q ss_pred eeEEEEEecCccccccccCCCcccc
Q psy9665 181 KQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 181 ~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+|.+++.||.++..+. +|+||++
T Consensus 448 dG~l~~~GR~dd~Ik~--~G~~v~p 470 (590)
T 3kxw_A 448 ENELYVTGRIKDLIII--YGKNHYP 470 (590)
T ss_dssp TTEEEEEEESSCHHHH--HHHTTHH
T ss_pred CCEEEEEcCccceEEE--CCEecCH
Confidence 7999999998888754 8888764
No 30
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.96 E-value=5.2e-30 Score=214.35 Aligned_cols=185 Identities=16% Similarity=0.206 Sum_probs=150.9
Q ss_pred CcccccchHHHHH-HHHHHHHhCCeEEEeCCC----CHHHHHHHHHhcCceEeeccHHHHHHHHhC----CCCCCCCCCc
Q psy9665 1 MALVPFFHGYGLL-LMLQAICMNNKLVVLPHF----DGHLFLSSIEKYRVTLLPAVPPLVVFLAKS----PLVDQYDLSS 71 (207)
Q Consensus 1 l~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~~ 71 (207)
++++|++|.+|+. .++.+++.|+++++.+++ ++..+++.++++++| +..+|+++..++.. ......++++
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~ 312 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGN 312 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTT
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhh
Confidence 3578999999987 588999999999999753 999999999999999 78899998887753 3334567899
Q ss_pred eeEEEEccCCCCHHHHHHHHHHhCC---CcCcceeccccccccceeeccCC-C-------------------------CC
Q psy9665 72 LTNIRCGAAPVGKSTLDQVGERLGL---SMDSMKQGYGMTELTILVTFSDL-D-------------------------VP 122 (207)
Q Consensus 72 lr~~~~~G~~~~~~~~~~~~~~~~~---~~~~i~~~YG~tE~g~~~~~~~~-~-------------------------~~ 122 (207)
||.+++||++++++++++|+++++. ...++++.||+||++..++.... . ..
T Consensus 313 lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 392 (480)
T 3t5a_A 313 ILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATS 392 (480)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEE
T ss_pred hheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcce
Confidence 9999999999999999999999842 22259999999999987766543 1 12
Q ss_pred CCccccccCCceEEEEeCCC-C---CCCcceEEEEcCeeeecccccCCCcC--------------------cccCCcEEE
Q psy9665 123 SSSVGKVMPSMKMKVLVKSH-T---MGSQDSFVISGDEIQFAPYCRKMSLG--------------------AYLCHWLKL 178 (207)
Q Consensus 123 ~~~~G~~~~~~~~~i~d~~~-~---~g~~Gel~i~g~~~~~~gy~~~~~~~--------------------~~~~d~~~~ 178 (207)
..++|+|++ ++++|+|+++ + +|+.|||+|+|+.+ +.|||++|+.+ +.|||..++
T Consensus 393 ~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v-~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~ 470 (480)
T 3t5a_A 393 LISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNV-ANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV 470 (480)
T ss_dssp EECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTS-CCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEE
T ss_pred eeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCcc-ccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeE
Confidence 347999999 9999999874 3 59999999999999 99999987543 236777777
Q ss_pred cCeeEEEEEec
Q psy9665 179 KGKQTVLVLGF 189 (207)
Q Consensus 179 ~~~~~~~i~gr 189 (207)
+ +|.++++||
T Consensus 471 d-dG~l~~~GR 480 (480)
T 3t5a_A 471 T-DGKMFIIGR 480 (480)
T ss_dssp E-TTEEEECC-
T ss_pred E-CCEEEEeCC
Confidence 4 788888776
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.95 E-value=1.7e-28 Score=226.29 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=168.6
Q ss_pred cccccchHHHHHHHHHHHHhCCeEEEeC---CCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 2 ALVPFFHGYGLLLMLQAICMNNKLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
.+.|++|..+.+.++.+++.|+++++.+ .+++..+++.++++++|++.++|++++.+.+.. ...++++|.+++|
T Consensus 652 ~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~g 728 (1304)
T 2vsq_A 652 SVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFG 728 (1304)
T ss_dssp ECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEE
T ss_pred EECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEe
Confidence 4678889888888999999999999987 369999999999999999999999999997653 2235789999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-----CCCCCccccccCCceEEEEeCCCC---CCCcceE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-----DVPSSSVGKVMPSMKMKVLVKSHT---MGSQDSF 150 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-----~~~~~~~G~~~~~~~~~i~d~~~~---~g~~Gel 150 (207)
|+++++++.+++.+.++.. +++|.||+||++..++.... .....++|+|+++++++|+|++++ +|+.|||
T Consensus 729 Ge~l~~~~~~~~~~~~~~~--~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl 806 (1304)
T 2vsq_A 729 GERASVPHVRKALRIMGPG--KLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGEL 806 (1304)
T ss_dssp SSCCCHHHHHHHHHHHCTT--CEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEE
T ss_pred cCCCCHHHHHHHHHhCCCC--EEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEE
Confidence 9999999999999998865 69999999999877655432 234567999999999999999887 3899999
Q ss_pred EEEcCeeeecccccCCCcC---------------cccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 151 VISGDEIQFAPYCRKMSLG---------------AYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 151 ~i~g~~~~~~gy~~~~~~~---------------~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
+|+|+.+ ++|||++|+.| ++|||..+++.+|.+.++||.++..+ ++|.||++
T Consensus 807 ~i~G~~v-~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvk--i~G~rie~ 873 (1304)
T 2vsq_A 807 CISGMGV-SKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVK--IRGHRIEL 873 (1304)
T ss_dssp EEEETTC-CCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEE--ETTEEEEH
T ss_pred EEecccc-CccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEE--ECCEeeCH
Confidence 9999999 99999998644 34888889999999999999888775 58999875
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.93 E-value=1.1e-25 Score=186.29 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=150.0
Q ss_pred cccccchHHHHH-HHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCC--CCCceeEEEEc
Q psy9665 2 ALVPFFHGYGLL-LMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQY--DLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl~h~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~~ 78 (207)
+++|+.|..+.+ .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++....... +++++|.+++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~g 214 (436)
T 3qov_A 135 NSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIG 214 (436)
T ss_dssp ECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEE
T ss_pred ECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEe
Confidence 456776555555 578889999999999999999999999999999999999999999876432222 37899999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccce-eeccCCCCCCCccccccCCceEEEEe-CCCC---CCCcceEEEE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTIL-VTFSDLDVPSSSVGKVMPSMKMKVLV-KSHT---MGSQDSFVIS 153 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~---~g~~Gel~i~ 153 (207)
|+++++++.+++++.|+.. +++.||+||+++. +..... .....+.|.+++.++|+| ++++ +|+.|||+|+
T Consensus 215 Ge~l~~~~~~~~~~~~g~~---v~~~YG~TE~~~~~~~~~~~--~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~ 289 (436)
T 3qov_A 215 AEPHTDEQRRKIERMLNVK---AYNSFGMTEMNGPGVAFECQ--EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLT 289 (436)
T ss_dssp SSCCCHHHHHHHHHHHTSE---EEEEEEEGGGTEEEEEEECT--TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEE
T ss_pred CCcCCHHHHHHHHHHhCcc---EEecCcchhhcCCeeEEecC--CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEe
Confidence 9999999999999999865 9999999999544 333221 222367778899999999 5666 4899999999
Q ss_pred cCeeeecccccCCCcCcccCCcEEEcCee------E---EEEEecCccccccccCCCcccc
Q psy9665 154 GDEIQFAPYCRKMSLGAYLCHWLKLKGKQ------T---VLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 154 g~~~~~~gy~~~~~~~~~~~d~~~~~~~~------~---~~i~grg~~~~~~~~~~~~~s~ 205 (207)
|... ..+ ++..+.|||..++++++ . +.+.||.++..+ ++|+||+.
T Consensus 290 ~~~~--~~~---~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik--~~G~~v~p 343 (436)
T 3qov_A 290 TLDR--EMM---PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFI--IKGVNIFP 343 (436)
T ss_dssp ESSC--CSS---CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEE--ETTEEECH
T ss_pred ccCc--CCc---eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEE--ECCEEECH
Confidence 8653 111 44456788888888776 4 578888777774 47888764
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.92 E-value=1.4e-25 Score=181.53 Aligned_cols=179 Identities=18% Similarity=0.268 Sum_probs=146.9
Q ss_pred CcccccchHHHHHHHHHHHHhCCeEEEeCC-CCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCCCCCceeEEEEcc
Q psy9665 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPH-FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGA 79 (207)
Q Consensus 1 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~~G 79 (207)
++++|++|++|+..++.+++.|+++++.++ +++ ++.++++++|++.++|++++.|++... ...+++++|.+++||
T Consensus 82 l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG 157 (358)
T 4gs5_A 82 LVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGG 157 (358)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECS
T ss_pred EEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcc
Confidence 367899999999888899999999999874 343 567899999999999999999998765 345789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCcCcceeccccccccceeeccCC-CCCCCccccccCCceEEEEeCCCCCCCcceEEEEcCeee
Q psy9665 80 APVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVLVKSHTMGSQDSFVISGDEIQ 158 (207)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~g~~Gel~i~g~~~~ 158 (207)
+++++++.+++++ ++.+ +++.||+||++..+...+. ....+.+|.+.|++++++. +.|||+++|+..
T Consensus 158 ~~l~~~~~~~~~~-~~~~---~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~-------~~Gel~~~g~~~- 225 (358)
T 4gs5_A 158 APVNHALAMQISD-LAMP---VYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVD-------ERGCLHISGAVT- 225 (358)
T ss_dssp SCCCHHHHHHHHT-CSSC---EEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEEC-------TTSEEEEESGGG-
T ss_pred cCCCchheecccc-cCce---EEeccccccccceeecccccccccceeeccCCCeEEEec-------CcCceEEecccc-
Confidence 9999999999986 4655 9999999999988777666 6677889999999999873 359999999987
Q ss_pred ecccccCCCcCcccCCcEEEcCeeEEEEEecCccccccccCCCcccc
Q psy9665 159 FAPYCRKMSLGAYLCHWLKLKGKQTVLVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 159 ~~gy~~~~~~~~~~~d~~~~~~~~~~~i~grg~~~~~~~~~~~~~s~ 205 (207)
..||+ .|||..++++++ +.++||.+++++ .+|+||++
T Consensus 226 ~~g~~-------~TGDlg~~d~~g-~~~~GR~dd~Ik--~~G~~v~p 262 (358)
T 4gs5_A 226 NGQTV-------QTNDLVEIHGNA-FQWIGRADNVIN--SGGVKIVL 262 (358)
T ss_dssp TTCCE-------EEEEEEEECSSE-EEEEEEGGGEEE--ETTEEEEH
T ss_pred cCcce-------ecCCccccccCc-eEEcccccCeEE--ECCEEECH
Confidence 66654 477777887776 555677776664 57887764
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.92 E-value=8e-25 Score=181.24 Aligned_cols=193 Identities=12% Similarity=0.051 Sum_probs=149.7
Q ss_pred ccccc-chHHHHHHHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCC--CCCceeEEEEc
Q psy9665 2 ALVPF-FHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQY--DLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl-~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~~ 78 (207)
+.+|+ +|..++...+.++..|+++++.+.++++.+++.++++++|+++++|+++..|.+....... +++++|.+++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~g 218 (437)
T 2y27_A 139 VSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFG 218 (437)
T ss_dssp ECSCCSSSHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEE
T ss_pred EcccccccccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEc
Confidence 45677 7888877788899999999998889999999999999999999999999999875322222 24789999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccc-cceeeccCCCCCCCccccccCCceEEEEeCC-CC---CCCcceEEEE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTEL-TILVTFSDLDVPSSSVGKVMPSMKMKVLVKS-HT---MGSQDSFVIS 153 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~-g~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~-~~---~g~~Gel~i~ 153 (207)
|+++++++.+++++.|+.. +++.||+||+ +..+..... ......+.|.+++.++|+|++ ++ +|+.|||+|+
T Consensus 219 Ge~l~~~~~~~~~~~~g~~---v~~~YG~TE~~g~~~~~~~~-~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~ 294 (437)
T 2y27_A 219 AEPWTNDMRVAIEQRMGID---AVDIYGLSEVMGPGVASECV-ETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFT 294 (437)
T ss_dssp SSCCCHHHHHHHHHHHTSE---EEEEEEETTTTEEEEEECCT-TTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CccCCHHHHHHHHHHHCcC---EEecCCchhhcCCeeEEecC-CCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEe
Confidence 9999999999999999865 9999999998 432333222 111125667789999999964 55 4889999999
Q ss_pred cCeeeecccccCCCcCcccCCcEEEcC-eeEE-----EEEecCccccccccCCCcccc
Q psy9665 154 GDEIQFAPYCRKMSLGAYLCHWLKLKG-KQTV-----LVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 154 g~~~~~~gy~~~~~~~~~~~d~~~~~~-~~~~-----~i~grg~~~~~~~~~~~~~s~ 205 (207)
|..- ..+ |+..+.|||..++++ +|.+ .+.||.++..+ ++|+||+.
T Consensus 295 ~~t~--~~~---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~--~~G~~v~p 345 (437)
T 2y27_A 295 SLTK--EAL---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMI--VRGVNVFP 345 (437)
T ss_dssp ESSC--SSS---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEE--ETTEEECH
T ss_pred cCCc--CCc---hhheeecCCEEEEeCCCCCCccccCccccccCCeEE--ECCeEECH
Confidence 8543 111 444567888888887 5775 78888777774 47888764
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.92 E-value=9.2e-25 Score=181.17 Aligned_cols=193 Identities=14% Similarity=0.089 Sum_probs=149.9
Q ss_pred ccccc-chHHHHHHHHHHHHhCCeEEEeCCCCHHHHHHHHHhcCceEeeccHHHHHHHHhCCCCCCC--CCCceeEEEEc
Q psy9665 2 ALVPF-FHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQY--DLSSLTNIRCG 78 (207)
Q Consensus 2 ~~~Pl-~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~~ 78 (207)
+.+|+ +|..++...+.++..|+++++.+.++++.+++.++++++|+++++|+++..|++....... .++++|.+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~g 220 (443)
T 2y4o_A 141 NAFGYGLFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFG 220 (443)
T ss_dssp ECSCCSSSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEE
T ss_pred EeccCcccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEEC
Confidence 45677 5777777788899999999999889999999999999999999999999999875332222 24789999999
Q ss_pred cCCCCHHHHHHHHHHhCCCcCcceeccccccccce-eeccCCCCCCCccccccCCceEEEEeCC-CC---CCCcceEEEE
Q psy9665 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTIL-VTFSDLDVPSSSVGKVMPSMKMKVLVKS-HT---MGSQDSFVIS 153 (207)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~-~~~~~~~~~~~~~G~~~~~~~~~i~d~~-~~---~g~~Gel~i~ 153 (207)
|+++++++.+++++.|+.. +++.||+||+++. +...... .....+.+.+++.++|+|++ ++ +|+.|||+|+
T Consensus 221 Ge~l~~~~~~~~~~~~g~~---v~~~YG~TE~~g~~~~~~~~~-~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~ 296 (443)
T 2y4o_A 221 AEPWTQALRNEVETRVGID---ALDIYGLSEVMGPGVACECVE-TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFT 296 (443)
T ss_dssp SSCCCHHHHHHHHHHHTCE---EEEEEEETTTTEEEEEEECTT-TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CCcCCHHHHHHHHHHhCcC---EEeccCchhhcCCeEEeccCC-CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEe
Confidence 9999999999999999865 9999999997432 3322221 11125556789999999954 65 4889999999
Q ss_pred cCeeeecccccCCCcCcccCCcEEEcCe-eEE-----EEEecCccccccccCCCcccc
Q psy9665 154 GDEIQFAPYCRKMSLGAYLCHWLKLKGK-QTV-----LVLGFGSQSCEENLGADNISL 205 (207)
Q Consensus 154 g~~~~~~gy~~~~~~~~~~~d~~~~~~~-~~~-----~i~grg~~~~~~~~~~~~~s~ 205 (207)
+..- ..+ |+..+.|||..+++++ |.+ .+.||.++..+ ++|+||+.
T Consensus 297 ~~t~--~~~---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~--~~G~~v~p 347 (443)
T 2y4o_A 297 SLTK--EAM---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLI--VRGVNVFP 347 (443)
T ss_dssp ESSC--SSS---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEE--ETTEEECH
T ss_pred CCCc--ccC---hhheeecCCEEEEcCCCCCCccccCccccccCCeEE--ECCEEECH
Confidence 8543 222 4455678998888887 775 78888887774 57888864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.89 E-value=1.9e-23 Score=169.49 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=137.8
Q ss_pred ccccc-chHHHHHHHHHHHHhCCeEEEeCCCCHH-----------------------HHHHHHHhcCceEeeccHHHHHH
Q psy9665 2 ALVPF-FHGYGLLLMLQAICMNNKLVVLPHFDGH-----------------------LFLSSIEKYRVTLLPAVPPLVVF 57 (207)
Q Consensus 2 ~~~Pl-~h~~g~~~~~~~l~~G~~~v~~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~ 57 (207)
+++|+ +|++|+...+.++..|+ +++...++|. .+++.++++++|++.++|+++..
T Consensus 140 ~~~p~g~~~~g~~~~~~~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~ 218 (369)
T 3hgu_A 140 AAIPTGPHIVGAINKERALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRE 218 (369)
T ss_dssp ECSCCTTCHHHHHHHHHHHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHH
T ss_pred EecCCCchhhhHHHHHHHHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHH
Confidence 56889 99999988777789999 6677788888 88889999999999999999999
Q ss_pred HHhCCCCCCCCCCceeEEEEccCCCCHHHHHHHH-HHhCCCcCcceeccccccccceeeccCCCCCCCccccc------c
Q psy9665 58 LAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVG-ERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKV------M 130 (207)
Q Consensus 58 l~~~~~~~~~~l~~lr~~~~~G~~~~~~~~~~~~-~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~G~~------~ 130 (207)
|++.+.....+++++|.+++||++++++++++++ +.|+.. ++++.||+||++.++...+. .++|+| .
T Consensus 219 l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~--~v~~~YG~TE~~~~~~~~~~----~~~G~~~~~~~~~ 292 (369)
T 3hgu_A 219 LLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDC--EFSASYGSTSALGVSRSLLI----TSESQQVIYDSFS 292 (369)
T ss_dssp HTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTS--EEEEEEEEGGGTEEEEECCB----CTTCSSCEEECCT
T ss_pred HHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCc--EEEcccCchhhhcceecccc----ccCCCcccccCCC
Confidence 9887543335568999999999999999999999 899444 59999999999877644321 258898 9
Q ss_pred CCceEEEEeC-CCC---CCCcceEEEEcC---eeeecccccCCCcCcc--cCCcEEEcCeeEEEEEec
Q psy9665 131 PSMKMKVLVK-SHT---MGSQDSFVISGD---EIQFAPYCRKMSLGAY--LCHWLKLKGKQTVLVLGF 189 (207)
Q Consensus 131 ~~~~~~i~d~-~~~---~g~~Gel~i~g~---~~~~~gy~~~~~~~~~--~~d~~~~~~~~~~~i~gr 189 (207)
|+++++|+|+ +++ +|+.|||+|++. .+ +.+|+..+..+.. .++| .-++..++.-+++
T Consensus 293 ~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~-l~ry~tgD~~~~~~~~~g~-~~d~~~~v~~~~~ 358 (369)
T 3hgu_A 293 PFITYDVVDSITAQTVEYGERGNVIVTHLSPWAF-YPRVAERDTAIRLPGVSGF-AGDRLADIEPLKI 358 (369)
T ss_dssp TTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEE-EEEEEEEEEEEEECCSTTC-SSCEEEEEEECC-
T ss_pred CCeEEEEECCCCCcCCCCCCceEEEEEEcCcccc-cccccCCceEEEecCCCCC-cCcccccceeccc
Confidence 9999999998 666 499999999873 34 5677655544432 2233 2233444544444
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.05 E-value=0.033 Score=47.35 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=67.2
Q ss_pred eeEEEEccCCCCHHHHHHHHHHhCCCcCcce-eccccccccceeeccCCCCCCCcccc-ccCC-ceEEEEeCCC----C-
Q psy9665 72 LTNIRCGAAPVGKSTLDQVGERLGLSMDSMK-QGYGMTELTILVTFSDLDVPSSSVGK-VMPS-MKMKVLVKSH----T- 143 (207)
Q Consensus 72 lr~~~~~G~~~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~----~- 143 (207)
+.+++.|| + ..-.+++++.+|.. .++ ..|++||+ .+.+...+...+...+. .+|+ +-.+.++.+. .
T Consensus 302 l~~~~~G~--~-~~Y~~~l~~~~g~~--p~~~~~Y~ASEg-~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGS--M-GQYVPMLNYYCNDL--PLVSTTYGSSET-TFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGG--G-GGGHHHHHHHHTTC--CEECCEEECSSC-EEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCC--h-HHHHHHHHHHcCCC--ccccCccccccc-eeeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcE
Confidence 55455555 2 55566777666544 466 99999995 33332221112222232 2233 3345555321 1
Q ss_pred -------CCCcceEEEEcCeeeecccccCCCcCcccCCcEEEcC----eeEEEEEecCccccccccCCCccc
Q psy9665 144 -------MGSQDSFVISGDEIQFAPYCRKMSLGAYLCHWLKLKG----KQTVLVLGFGSQSCEENLGADNIS 204 (207)
Q Consensus 144 -------~g~~Gel~i~g~~~~~~gy~~~~~~~~~~~d~~~~~~----~~~~~i~grg~~~~~~~~~~~~~s 204 (207)
.|+.+||+|+...- +- .++.||.+++.+ -..+.+.||.+... ++.|+|++
T Consensus 376 v~l~eVe~G~~YelViTt~~G-L~--------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l--~~~Gekl~ 436 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNFAG-LY--------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL--SIDSDKTN 436 (581)
T ss_dssp EEGGGCCTTCEEEEEEECSSS-CC--------SEECCEEEEEEEEETTEEEEEEEEETTEEE--CSSSCCEE
T ss_pred eCHHHcCCCceEEEEEeeccc-ee--------eEEcCCEEEEcccCCCCcEEEEEEecCCEE--EeeeeECC
Confidence 37889999976643 22 235778777775 55677778776666 77888875
No 38
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=95.38 E-value=0.11 Score=44.09 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=68.5
Q ss_pred CCceeEE--EEccCCCCHHHHHHHHHHhCCCcCcce-eccccccccceeeccCCCCCCCcccc-ccCCc-eEEEEeCC--
Q psy9665 69 LSSLTNI--RCGAAPVGKSTLDQVGERLGLSMDSMK-QGYGMTELTILVTFSDLDVPSSSVGK-VMPSM-KMKVLVKS-- 141 (207)
Q Consensus 69 l~~lr~~--~~~G~~~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~-- 141 (207)
.++++.+ +.+|. + ....+++++.+|.. .++ ..|++||+ .+.+...+...++..+. .+|+. -.+.+..+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~--p~~~~~Y~ASEg-~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDL--PLVSHDYGSSEG-WIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTS--CEEECCEEETTE-EEEECCCTTSCTTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCC--ccccCceeccce-eeeeecCCCCCccccceeecCCcEEEEEEecccc
Confidence 4566533 34442 2 44556777766543 466 99999996 34333222222222222 33333 23444321
Q ss_pred C------------CCCCcceEEEEcCeeeecccccCCCcCcccCCcEEEcCe----eEEEEEecCccccccccCCCccc
Q psy9665 142 H------------TMGSQDSFVISGDEIQFAPYCRKMSLGAYLCHWLKLKGK----QTVLVLGFGSQSCEENLGADNIS 204 (207)
Q Consensus 142 ~------------~~g~~Gel~i~g~~~~~~gy~~~~~~~~~~~d~~~~~~~----~~~~i~grg~~~~~~~~~~~~~s 204 (207)
+ ++|+.+||+|+...- +- .++.||.+++.+. -.+.+.||.+... ++.|+|++
T Consensus 376 ~~~~~~~v~l~eve~G~~YelviTt~~G-L~--------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l--~~~Ge~~~ 443 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEEYEVVITNYAG-LY--------RYRLGDVVKVIGFYNNTPQLKFICRRNLIL--SINIDKNT 443 (581)
T ss_dssp ----CCCEEGGGCCTTCEEEEEEESTTS-CS--------SEEEEEEEEEEEEETTEEEEEEEEETTCCB--CSSSCCBC
T ss_pred cCCCCceeeHHHcCCCCeEEEEEeeccc-ee--------eEEcCCEEEEecccCCCcEEEEEeecCCeE--EeeeeECC
Confidence 1 138889999976643 22 2457888877764 5778888877666 77888875
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=95.32 E-value=0.084 Score=45.11 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=68.6
Q ss_pred CCcee---EEEEccCCCCHHHHHHHHHHhCCCcCcce-eccccccccceeeccCCCCCCCcccc-ccCCc-eEEEEeCCC
Q psy9665 69 LSSLT---NIRCGAAPVGKSTLDQVGERLGLSMDSMK-QGYGMTELTILVTFSDLDVPSSSVGK-VMPSM-KMKVLVKSH 142 (207)
Q Consensus 69 l~~lr---~~~~~G~~~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~~ 142 (207)
.+++| +++.|| + ..-.+++++.++.. .++ ..|++||+- +.+...+...+...+. .+|+. -.+.++.+.
T Consensus 301 WPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~--p~~~~~Y~ASEg~-~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~ 374 (609)
T 4b2g_A 301 WPNTKYLDVIVTGA--M-AQYIPTLDYYSGGL--PLACTMYASSECY-FGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEH 374 (609)
T ss_dssp STTCCEEEEECSGG--G-GGGHHHHHHHHTSC--CEECCEEECSSCE-EEECSCTTSCGGGCCEEECTTSCEEEEEEGGG
T ss_pred CCCCcEEEEEccCC--h-HHHHHHHHHHcCCC--ccccCccccccee-eeeecCCCCCcccCceeecCCcEEEEEEeccc
Confidence 45644 444455 2 45556676666543 455 999999963 3333221111122222 22332 344443211
Q ss_pred -------------------CCCCcceEEEEcCeeeecccccCCCcCcccCCcEEEcC----eeEEEEEecCccccccccC
Q psy9665 143 -------------------TMGSQDSFVISGDEIQFAPYCRKMSLGAYLCHWLKLKG----KQTVLVLGFGSQSCEENLG 199 (207)
Q Consensus 143 -------------------~~g~~Gel~i~g~~~~~~gy~~~~~~~~~~~d~~~~~~----~~~~~i~grg~~~~~~~~~ 199 (207)
+.|+.+||+|+... |.|+ ++.||.+++.+ ...+.++||.+... ++.
T Consensus 375 ~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~----GL~R-----Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l--~~~ 443 (609)
T 4b2g_A 375 SSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA----GLYR-----YRVGDILRVTGFHNSAPQFHFVRRKNVLL--SID 443 (609)
T ss_dssp TTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT----SCCS-----EEEEEEEEEEEEETTEEEEEEEEETTCCB--CSS
T ss_pred cccccccCCCCccccHhHcCCCCeEEEehhhhh----hhhh-----eecCCEEEEeecCCCCcEEEEEEecCCeE--Ecc
Confidence 13788999996543 3333 56888888775 56788888887776 888
Q ss_pred CCccc
Q psy9665 200 ADNIS 204 (207)
Q Consensus 200 ~~~~s 204 (207)
|+|++
T Consensus 444 Geki~ 448 (609)
T 4b2g_A 444 SDKTD 448 (609)
T ss_dssp SCCBC
T ss_pred ccCCC
Confidence 99886
No 40
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=94.66 E-value=0.012 Score=47.03 Aligned_cols=39 Identities=5% Similarity=-0.148 Sum_probs=28.2
Q ss_pred CCcceEEEEcCeeeecccccCCCcCc----ccCCcEEEcCeeEE
Q psy9665 145 GSQDSFVISGDEIQFAPYCRKMSLGA----YLCHWLKLKGKQTV 184 (207)
Q Consensus 145 g~~Gel~i~g~~~~~~gy~~~~~~~~----~~~d~~~~~~~~~~ 184 (207)
++.|++++.+|.+ ..+|.++++... ..++|++..|.+.+
T Consensus 196 ~~~g~~~~~~pgv-~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~ 238 (358)
T 4gs5_A 196 PEASELYVFLPGI-QYGVDERGCLHISGAVTNGQTVQTNDLVEI 238 (358)
T ss_dssp TTCCSCEEECTTC-EEEECTTSEEEEESGGGTTCCEEEEEEEEE
T ss_pred cccceeeccCCCe-EEEecCcCceEEecccccCcceecCCcccc
Confidence 4568999999998 888887776432 25668888765543
No 41
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=87.23 E-value=4.4 Score=29.62 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=49.2
Q ss_pred chHHHHHHHH-HHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeec------cHHH--HHHHHhCCCCCCCCC-CceeEE
Q psy9665 7 FHGYGLLLML-QAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPA------VPPL--VVFLAKSPLVDQYDL-SSLTNI 75 (207)
Q Consensus 7 ~h~~g~~~~~-~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~------~P~~--~~~l~~~~~~~~~~l-~~lr~~ 75 (207)
.|..|...+- ..-..|-.++.+. ...++.+.+.+.++++..+.. ++++ ++.+.+..+ ...+ .+++ +
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~--~~~~~~~v~-v 180 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN--EEKLRDSVK-C 180 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH--HTTCGGGSE-E
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH--HcCCCCCCE-E
Confidence 3777776533 3345677777776 568999999999999987655 2222 222222211 1111 2344 7
Q ss_pred EEccCCCCHHHHHH
Q psy9665 76 RCGAAPVGKSTLDQ 89 (207)
Q Consensus 76 ~~~G~~~~~~~~~~ 89 (207)
++||.+++++..++
T Consensus 181 ~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 181 MFGGAPVSDKWIEE 194 (215)
T ss_dssp EEESSSCCHHHHHH
T ss_pred EEECCCCCHHHHHH
Confidence 88999999875544
No 42
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=49.95 E-value=3.3 Score=34.76 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=14.6
Q ss_pred ccccCCCcCccc-CCcEEEcCeeEEEEEecCccccccccCC
Q psy9665 161 PYCRKMSLGAYL-CHWLKLKGKQTVLVLGFGSQSCEENLGA 200 (207)
Q Consensus 161 gy~~~~~~~~~~-~d~~~~~~~~~~~i~grg~~~~~~~~~~ 200 (207)
+|+++.|..+.. ++++++.||.+..|.-+|.++.+.+++.
T Consensus 446 ~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~ 486 (570)
T 4gr5_A 446 RMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEA 486 (570)
T ss_dssp EEEEEEEEEEECTTSCEEEEEC-------------------
T ss_pred EEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHH
Confidence 566777776653 5688888877777777888888887764
No 43
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=48.67 E-value=46 Score=27.77 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=37.2
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeeccHHHHHHHHhCC
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSP 62 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~ 62 (207)
.|+++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+-+.....|++++
T Consensus 170 ~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~p 239 (521)
T 4e4g_A 170 TPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTHP 239 (521)
T ss_dssp CCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTCT
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhCC
Confidence 3444443333 37788999999999772 3 4566777777752 344444455667777764
No 44
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=47.72 E-value=54 Score=26.99 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=43.2
Q ss_pred cccchHHHH--HHHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeeccHHHHHHHHhCCCCCCCCCCce
Q psy9665 4 VPFFHGYGL--LLMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSPLVDQYDLSSL 72 (207)
Q Consensus 4 ~Pl~h~~g~--~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~~~~~~~l~~l 72 (207)
.|.++-..+ .-+..+|.+|.++++-+. . ....+.+++++.. ++++.+-+.....|++++ .+
T Consensus 149 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~--------~v 220 (486)
T 1t90_A 149 APFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHP--------EI 220 (486)
T ss_dssp CCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCT--------TE
T ss_pred CCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhCC--------CC
Confidence 455543333 247788999999999763 2 4567778887752 234444445667777764 36
Q ss_pred eEEEEccC
Q psy9665 73 TNIRCGAA 80 (207)
Q Consensus 73 r~~~~~G~ 80 (207)
+.+.+.|+
T Consensus 221 ~~I~fTGS 228 (486)
T 1t90_A 221 KAISFVGS 228 (486)
T ss_dssp EEEEEESC
T ss_pred CEEEEeCC
Confidence 66666664
No 45
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=47.52 E-value=68 Score=26.69 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=43.5
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeC----CCCHHHHHHHHHhcC-----ceEeeccHHHHHHHHhCCCCCCCCCCc
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLP----HFDGHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~~~~~~~l~~ 71 (207)
..|.++-..+. -+..+|.+|.++++-+ +.+...+.+++++.. ++++.+-+.....|++++ .
T Consensus 157 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~eaGlP~gvv~vv~g~~~~g~~L~~~p--------~ 228 (517)
T 3r31_A 157 IGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDTGPLLVNHP--------D 228 (517)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHTTCCTTSEEECCCCTTHHHHHHTCT--------T
T ss_pred ECCCcchHHHHHHHHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHHhCcCcccEEEEECCHHHHHHHHhCC--------C
Confidence 34555554444 3678899999999976 235677788887763 233333345667776663 3
Q ss_pred eeEEEEcc
Q psy9665 72 LTNIRCGA 79 (207)
Q Consensus 72 lr~~~~~G 79 (207)
++.+.+.|
T Consensus 229 vd~I~FTG 236 (517)
T 3r31_A 229 VAKVSLTG 236 (517)
T ss_dssp EEEEEEES
T ss_pred cCEEeccC
Confidence 66666655
No 46
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=46.38 E-value=1.8 Score=35.82 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=27.5
Q ss_pred HHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeec
Q psy9665 14 LMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPA 50 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 50 (207)
.+++++..|+..+.++ .+.++.+..++++.++.++..
T Consensus 67 ~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~ 104 (512)
T 3fce_A 67 NFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS 104 (512)
T ss_dssp HHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEe
Confidence 5777788888877776 567778888888877776653
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=45.70 E-value=4.5 Score=33.74 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=24.0
Q ss_pred HHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeecc
Q psy9665 14 LMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAV 51 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~ 51 (207)
.+++++..|+..+.+. .+.++.+...+++.++.++...
T Consensus 96 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~ 134 (544)
T 3o83_A 96 VFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGS 134 (544)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEc
Confidence 4666667777666554 4566666666777666666543
No 48
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=45.32 E-value=4.3 Score=33.90 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=8.7
Q ss_pred cccCCCcCcc-cCCcEEEcCeeEEEEEecCccccccccC
Q psy9665 162 YCRKMSLGAY-LCHWLKLKGKQTVLVLGFGSQSCEENLG 199 (207)
Q Consensus 162 y~~~~~~~~~-~~d~~~~~~~~~~~i~grg~~~~~~~~~ 199 (207)
||+..|..+. .++++++.||.+..|.-+|.++.+.+++
T Consensus 405 w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE 443 (562)
T 3ite_A 405 MYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVS 443 (562)
T ss_dssp EEEEEEEEEECTTSCEEEEEEC-----------------
T ss_pred EEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHH
Confidence 3344444333 2334444444444444445555444443
No 49
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=43.90 E-value=59 Score=26.90 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=37.8
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSP 62 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~ 62 (207)
..|+++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+ -+..-..|++++
T Consensus 168 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvvnvv~g~~~~~g~~L~~hp 239 (497)
T 3i44_A 168 ITPWNWPMNQVTLKVIPALLAGCTMVLKPSEIAPLSAMLFAEILDEAALPSGVFNLINGDGANVGSYLSAHP 239 (497)
T ss_dssp ECCSSSHHHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCTTTHHHHHHHCT
T ss_pred ECCCcchHHHHHHHHHHHHHcCCEEEEECCcccHHHHHHHHHHHHHhCcCCCeEEEEeCCChHHHHHHHhCC
Confidence 35666554443 37788999999999763 3 4566677777763 333444 235667777764
No 50
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=43.07 E-value=54 Score=27.01 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=37.7
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCCC
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSPL 63 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~~ 63 (207)
.|+++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+. +..-..|++++.
T Consensus 156 ~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gv~~vv~g~~~~~g~~L~~~p~ 227 (484)
T 3ifg_A 156 TPWNFPAAMIARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIGDPKAIGTEITSNPI 227 (484)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCHHHHHHHHHHCTT
T ss_pred CCCcChHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhCCC
Confidence 4555444333 37788999999999773 2 4566677777753 3344442 456777887754
No 51
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=42.14 E-value=74 Score=26.29 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=47.6
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~~~~~~l~ 70 (207)
..|.++-..+. -+..+|.+|.++++-+. . +...+.+++++.. ++++.+ -+..-+.|++++
T Consensus 155 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~~~g~~L~~~p-------- 226 (497)
T 3k2w_A 155 ITAWNFPLALAGRKIGPALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGVLNVINGTGSVVGQTLCESP-------- 226 (497)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCSCTTTHHHHHHHCS--------
T ss_pred ECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCCchHHHHHHHhCC--------
Confidence 35655554444 37788999999999762 2 4566777777763 233333 224566676663
Q ss_pred ceeEEEEccCCCCHHHHHHHHHHh
Q psy9665 71 SLTNIRCGAAPVGKSTLDQVGERL 94 (207)
Q Consensus 71 ~lr~~~~~G~~~~~~~~~~~~~~~ 94 (207)
.++.+.+.|+ .++.+.+.+..
T Consensus 227 ~vd~I~fTGS---~~~G~~i~~~a 247 (497)
T 3k2w_A 227 ITKMITMTGS---TVAGKQIYKTS 247 (497)
T ss_dssp SEEEEEEESC---HHHHHHHHHHH
T ss_pred CcCEEEEECc---HHHHHHHHHHh
Confidence 3666666663 34444444443
No 52
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=41.83 E-value=51 Score=27.16 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=36.2
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-CC---HHHHHHHHHhcC-----ceEeeccHHHHHHHHhCC
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-FD---GHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSP 62 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~ 62 (207)
.|+++-..+. -+..+|.+|.++++-+. .. ...+.+++++.. ++++.+-+...+.|++++
T Consensus 147 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~ 216 (490)
T 3ju8_A 147 GPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAHR 216 (490)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTCT
T ss_pred CCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhCC
Confidence 3444443333 36788999999999773 33 455666777652 344444456677777764
No 53
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=41.43 E-value=83 Score=26.16 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=42.7
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~~~~~~~l~ 70 (207)
..|+++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+. +..-..|++++.
T Consensus 185 I~PwN~P~~~~~~~~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~g~~~g~~L~~~~~------- 257 (517)
T 2o2p_A 185 VIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPD------- 257 (517)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHTTCCTTSEEECCSCHHHHHHHHHHCTT-------
T ss_pred ECCCcchHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHhCCCcCeEEEEeCCCHHHHHHHHhCCC-------
Confidence 35666544443 36788999999999762 2 4567778887752 2334442 345677777743
Q ss_pred ceeEEEEcc
Q psy9665 71 SLTNIRCGA 79 (207)
Q Consensus 71 ~lr~~~~~G 79 (207)
++.+.+.|
T Consensus 258 -v~~V~FTG 265 (517)
T 2o2p_A 258 -VRKIGFTG 265 (517)
T ss_dssp -CCEEEEES
T ss_pred -CCEEEEEC
Confidence 55565555
No 54
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=41.37 E-value=2.2 Score=35.70 Aligned_cols=42 Identities=5% Similarity=-0.031 Sum_probs=30.2
Q ss_pred HHHHHHHhCCeEEEeC-CCC-------HHHHHHHHHhcCceEeeccHHHH
Q psy9665 14 LMLQAICMNNKLVVLP-HFD-------GHLFLSSIEKYRVTLLPAVPPLV 55 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~-------~~~~~~~i~~~~~t~~~~~P~~~ 55 (207)
.+++++..|+..+.++ ++. ++.+...+++.++..+.......
T Consensus 90 ~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 139 (576)
T 3gqw_A 90 AFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL 139 (576)
T ss_dssp HHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH
T ss_pred HHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH
Confidence 5778888888888776 343 56777788888888777655443
No 55
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=40.54 E-value=70 Score=26.48 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=37.3
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSP 62 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~ 62 (207)
..|.++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+. +..-..|+.++
T Consensus 158 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~~ 229 (503)
T 3iwj_A 158 ITPWNYPMLMATWKVAPALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLATHP 229 (503)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCHHHHTHHHHTCT
T ss_pred ECCCchHHHHHHHHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEeCCcHHHHHHHhhCC
Confidence 35666655554 36778999999999763 2 4566677777652 3334442 34566677664
No 56
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=39.75 E-value=71 Score=26.65 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=37.5
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSP 62 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~ 62 (207)
..|.++-..+. -+..+|.+|.++++-+. . +...+.+++++.. ++++.+ -+..-..|++++
T Consensus 168 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p 239 (528)
T 3u4j_A 168 ITPWNFPFIIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPDGVFNVVTGYGDPAGQVLAEDP 239 (528)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCCSSTTHHHHHHHCT
T ss_pred ECCCccHHHHHHHHHHHHHHcCCeEEEEcCCccHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHhCC
Confidence 34666555444 36778999999999762 2 4566777777763 233333 234667777764
No 57
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=39.51 E-value=82 Score=26.21 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=38.2
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPL 63 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~ 63 (207)
..|+++-..+. -+..+|.+|.++++-+. . +...+.+++++.. ++++.+ -+..-..|..++.
T Consensus 177 I~PwN~P~~~~~~~~apALaaGNtVVlKPs~~tp~t~~~l~~l~~eaGlP~gvvnvv~g~~~~~g~~L~~~p~ 249 (520)
T 3ed6_A 177 ITPWNYPLLQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKE 249 (520)
T ss_dssp ECCSSSHHHHHHHHHHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHHCCCTTSEEECCSCCTTHHHHHHHCTT
T ss_pred ECCCccHHHHHHHHHHHHHHcCCEEEEEcCCcchHHHHHHHHHHHHhCCCCCeEEEEeCCChHHHHHHHhCCC
Confidence 35666655554 36778999999999762 2 4566677777653 233333 2456677777753
No 58
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=39.43 E-value=71 Score=23.72 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=46.2
Q ss_pred chHHHHHHHH-HHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccH------HHHHHHHhCCCCCCCCCCceeEEEEc
Q psy9665 7 FHGYGLLLML-QAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVP------PLVVFLAKSPLVDQYDLSSLTNIRCG 78 (207)
Q Consensus 7 ~h~~g~~~~~-~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P------~~~~~l~~~~~~~~~~l~~lr~~~~~ 78 (207)
.|..|...+. ..-..|-.++.+. ...++.+.+.++++++.++..+- ..+..+.+...... ..+ .+++|
T Consensus 135 ~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~---~~~-~v~vG 210 (258)
T 2i2x_B 135 VHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENG---IKI-PFACG 210 (258)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTT---CCC-CEEEE
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcC---CCC-cEEEE
Confidence 4777776533 3345677776665 67889999999999998865321 12223332211111 123 37788
Q ss_pred cCCCCHHHH
Q psy9665 79 AAPVGKSTL 87 (207)
Q Consensus 79 G~~~~~~~~ 87 (207)
|.+++++..
T Consensus 211 G~~~~~~~~ 219 (258)
T 2i2x_B 211 GGAVNQDFV 219 (258)
T ss_dssp STTCCHHHH
T ss_pred CccCCHHHH
Confidence 888886643
No 59
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=38.65 E-value=77 Score=26.28 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=37.2
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC--c---eEeec-cHHHHHHHHhCCC
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR--V---TLLPA-VPPLVVFLAKSPL 63 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~---t~~~~-~P~~~~~l~~~~~ 63 (207)
.|+++-..+. -+..+|.+|.++++-+. . ....+.+++++.. . +++.+ -+..-..|++++.
T Consensus 176 ~PwN~P~~~~~~~~a~ALaaGN~VVlKPs~~tp~t~~~l~~l~~eaGlP~gv~~vv~g~~~~~g~~L~~~p~ 247 (504)
T 3ek1_A 176 TPWNFPAAMITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTGKAREIGAELTSNDT 247 (504)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTTEEECCSCHHHHHHHHHHCTT
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhCCC
Confidence 4555444333 37788999999999772 3 4566677777752 2 33333 2456677877753
No 60
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=37.85 E-value=99 Score=25.49 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=42.7
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeC-CC---CHHHHHHHHHhcC-----ceEeeccHHHHHHHHhCCCCCCCCCCc
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLP-HF---DGHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~-~~---~~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~~~~~~~l~~ 71 (207)
..|.++-..+. -+..+|.+|.++++-+ .. +...+.+++++.. ++++.+-+..-..|++++ .
T Consensus 153 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~g~~L~~~~--------~ 224 (495)
T 3b4w_A 153 IVAWNVPLFLAVNKIAPALLAGCTIVLKPAAETPLTANALAEVFAEVGLPEGVLSVVPGGIETGQALTSNP--------D 224 (495)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECBTTSCHHHHHHHHHHHHTTCCTTSEEECCBSHHHHHHHTTCT--------T
T ss_pred ECCCcchHHHHHHHHHHHHHcCCEEEEecCCccHHHHHHHHHHHHHhCCCcCeEEEEeCCHHHHHHHHhCC--------C
Confidence 45665544443 3678899999999976 23 4567778887752 233334334566676553 3
Q ss_pred eeEEEEccC
Q psy9665 72 LTNIRCGAA 80 (207)
Q Consensus 72 lr~~~~~G~ 80 (207)
++.+.+.|+
T Consensus 225 v~~I~FTGS 233 (495)
T 3b4w_A 225 IDMFTFTGS 233 (495)
T ss_dssp CCEEEEESC
T ss_pred cCEEEEeCC
Confidence 666666663
No 61
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=36.86 E-value=92 Score=25.74 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=46.8
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC----CCHHHHHHHHHhcC--c---eEeeccHHHHHHHHhCCCCCCCCCCce
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH----FDGHLFLSSIEKYR--V---TLLPAVPPLVVFLAKSPLVDQYDLSSL 72 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~--~---t~~~~~P~~~~~l~~~~~~~~~~l~~l 72 (207)
.|.++-..+. -+..+|.+|.++++-+. .....+.+++++.. . +++.+....-..|.+++ .+
T Consensus 165 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~g~~L~~~~--------~v 236 (501)
T 1uxt_A 165 TPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIALLNLPGKEAEKIVADD--------RV 236 (501)
T ss_dssp CCTTSTTHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTCT--------TC
T ss_pred CCCccHHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHhCCCcCeEEEEeCCcHHHHHHHhCC--------Cc
Confidence 4555543333 47788999999999762 24567778887752 2 33333334556676664 35
Q ss_pred eEEEEccCCCCHHHHHHHHHH
Q psy9665 73 TNIRCGAAPVGKSTLDQVGER 93 (207)
Q Consensus 73 r~~~~~G~~~~~~~~~~~~~~ 93 (207)
+.+.+.|+ .++.+.+.+.
T Consensus 237 d~I~FTGS---~~~G~~i~~~ 254 (501)
T 1uxt_A 237 AAVSFTGS---TEVGERVVKV 254 (501)
T ss_dssp CEEEEESC---HHHHHHHHHH
T ss_pred CEEEEeCc---HHHHHHHHHh
Confidence 55666663 4455555544
No 62
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=36.55 E-value=66 Score=26.23 Aligned_cols=69 Identities=7% Similarity=0.055 Sum_probs=41.9
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-CC---HHHHHHHHHhcC-----ceEeeccHHHHHHHHhCCCCCCCCCCce
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-FD---GHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSPLVDQYDLSSL 72 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~~~~~~~l~~l 72 (207)
.|+++-..+. -+..+|.+|.++++-+. .. ...+.+++++.. ++++.+.+.....|++++ .+
T Consensus 134 ~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aglP~gv~~vv~g~~~~~~~l~~~~--------~v 205 (462)
T 3etf_A 134 MPWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNANNEGVSQMINDP--------RI 205 (462)
T ss_dssp CCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHHHHHHHHTTCCBTTEEECCCCHHHHHHHHTST--------TE
T ss_pred CCCchHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcCeEEEEECCHHHHHHHhcCC--------CC
Confidence 4544444333 37788999999999773 33 455666777642 334444456667777664 36
Q ss_pred eEEEEccC
Q psy9665 73 TNIRCGAA 80 (207)
Q Consensus 73 r~~~~~G~ 80 (207)
+.+.+.|+
T Consensus 206 ~~v~fTGS 213 (462)
T 3etf_A 206 AAVTVTGS 213 (462)
T ss_dssp EEEEEESC
T ss_pred CEEEEeCC
Confidence 66666664
No 63
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=35.61 E-value=1.1e+02 Score=25.16 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=46.3
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCCCCCCCCCc
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~~~~~~l~~ 71 (207)
.|.++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+ -+..-+.|++++ .
T Consensus 153 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~p--------~ 224 (481)
T 3jz4_A 153 TPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNP--------L 224 (481)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTTEEECCBCTHHHHHHHHHCT--------T
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCcCCCeEEEEeCCChHHHHHHHhCC--------C
Confidence 3444433332 46788999999999773 2 4566677777752 233444 245667787774 3
Q ss_pred eeEEEEccCCCCHHHHHHHHHH
Q psy9665 72 LTNIRCGAAPVGKSTLDQVGER 93 (207)
Q Consensus 72 lr~~~~~G~~~~~~~~~~~~~~ 93 (207)
++.+.+.|+ .++.+.+.+.
T Consensus 225 v~~I~fTGS---~~~g~~i~~~ 243 (481)
T 3jz4_A 225 VRKLSFTGS---TEIGRQLMEQ 243 (481)
T ss_dssp EEEEEEESC---HHHHHHHHHH
T ss_pred cCEEEEECC---HHHHHHHHHH
Confidence 666666663 3444444443
No 64
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=35.50 E-value=4.5 Score=33.38 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeec
Q psy9665 14 LMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPA 50 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 50 (207)
.+++++..|+..+.++ .+.++.+...+++.++.++..
T Consensus 68 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~ 105 (511)
T 3e7w_A 68 SFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIH 105 (511)
T ss_dssp HHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEe
Confidence 5778888898888776 577888888888888887764
No 65
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=35.36 E-value=92 Score=25.59 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=37.4
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSP 62 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~ 62 (207)
..|.++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+ -+..-..|..++
T Consensus 149 I~pwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~~L~~~p 220 (490)
T 2ve5_A 149 IGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHP 220 (490)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHCT
T ss_pred ECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEeCCChHHHHHHHhCC
Confidence 35666555444 36788999999999763 2 4566777777762 233333 234667777664
No 66
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=35.07 E-value=4 Score=34.42 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=29.9
Q ss_pred HHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeecc
Q psy9665 14 LMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAV 51 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~ 51 (207)
.+++++..|+..+.+. .+.++.+...+++.++.++...
T Consensus 127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~ 165 (580)
T 3etc_A 127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCI 165 (580)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEe
Confidence 5778888888888776 5678888888888888877653
No 67
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=34.69 E-value=1.1e+02 Score=25.20 Aligned_cols=70 Identities=11% Similarity=0.159 Sum_probs=44.3
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~~~~~~~l~ 70 (207)
..|+++-..+. -+..+|.+|.++++-|. . +...+.+++++.. ++++.+. +..-+.|++++.
T Consensus 149 I~PwNfP~~~~~~~~a~ALaaGNtVVlKPse~tp~ta~~l~~l~~eaGlP~gv~~vv~g~g~~~g~~L~~~p~------- 221 (490)
T 2wme_A 149 IGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPL------- 221 (490)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHCTT-------
T ss_pred eccccCcchhhhhhHHHHHHcCCeEEEECCcCCHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHhCCC-------
Confidence 45666655554 37778999999999773 3 4566777777753 2444443 346677777753
Q ss_pred ceeEEEEccC
Q psy9665 71 SLTNIRCGAA 80 (207)
Q Consensus 71 ~lr~~~~~G~ 80 (207)
++.+.+.|+
T Consensus 222 -v~~I~FTGS 230 (490)
T 2wme_A 222 -IEKISFTGG 230 (490)
T ss_dssp -CCEEEEESC
T ss_pred -CCEEEEECC
Confidence 555666553
No 68
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=34.29 E-value=1e+02 Score=25.53 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=42.1
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~~~~~~l~ 70 (207)
..|.++-..+. -+..+|.+|.++++-+. . +...+.+++++.. ++++.+ -+..-..|++++
T Consensus 165 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~p-------- 236 (500)
T 1o04_A 165 IIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHE-------- 236 (500)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCTTTHHHHHHTCT--------
T ss_pred ECCCCchHHHHHHHHHHHHHcCCEEEEECCccChHHHHHHHHHHHHhCCCcCeEEEEecCcHHHHHHHHhCC--------
Confidence 45666544333 47788999999999762 3 4566777777752 233333 233566677664
Q ss_pred ceeEEEEcc
Q psy9665 71 SLTNIRCGA 79 (207)
Q Consensus 71 ~lr~~~~~G 79 (207)
.++.+.+.|
T Consensus 237 ~v~~I~FTG 245 (500)
T 1o04_A 237 DVDKVAFTG 245 (500)
T ss_dssp TCCEEEEES
T ss_pred CcCEEEEEC
Confidence 355566555
No 69
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=33.76 E-value=63 Score=26.77 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=35.7
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeC-CCC---HHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCC
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLP-HFD---GHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSP 62 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~-~~~---~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~ 62 (207)
.|+++-..+. -+..+|.+|.++++-+ ... ...+.+++++.. ++++.+. +..-+.|++++
T Consensus 160 ~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~ta~~l~~ll~eaGlP~gvv~vv~g~~~~~g~~L~~~p 230 (505)
T 3prl_A 160 SPFNYPVNLAAAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPEGIIQVVTGRGSVIGDHLVEHP 230 (505)
T ss_dssp ECSSSTTHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHHTCT
T ss_pred CCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCCCHHHHHHHHhCC
Confidence 3444443333 3778899999999976 333 455667777742 3444442 45567777664
No 70
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=33.75 E-value=1.4e+02 Score=24.67 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=42.3
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC----CCHHHHHHHHHhcC-----ceEeeccHHHHHHHHhCCCCCCCCCCc
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH----FDGHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~~~~~~~l~~ 71 (207)
..|.++-..+. -+..+|.+|.++++-+. .+...+.+++++.. ++++.+....-..|.+++.
T Consensus 162 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~~aGlP~gvv~vv~g~~~~g~~L~~~p~-------- 233 (503)
T 1a4s_A 162 ILAWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGAETGSLLCHHPN-------- 233 (503)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCTT--------
T ss_pred ECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCcCeEEEEecCchHHHHHHhCCC--------
Confidence 35666544443 37788999999999762 24567778887752 2333332245667777743
Q ss_pred eeEEEEcc
Q psy9665 72 LTNIRCGA 79 (207)
Q Consensus 72 lr~~~~~G 79 (207)
++.+.+.|
T Consensus 234 v~~V~FTG 241 (503)
T 1a4s_A 234 VAKVSFTG 241 (503)
T ss_dssp CCEEEEES
T ss_pred cCEEEEeC
Confidence 55565555
No 71
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=32.92 E-value=1.2e+02 Score=24.86 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=47.6
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC----CCHHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH----FDGHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~~~~~~~l~ 70 (207)
..|.++-..+. -+..+|.+|.++++-+. .....+.+++++.. ++++.+. +..-..|.+++
T Consensus 149 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~~L~~~~-------- 220 (479)
T 2imp_A 149 ILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNP-------- 220 (479)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHCT--------
T ss_pred ECCCchHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHhCCCcCeEEEEECCcHHHHHHHHhCC--------
Confidence 34666555444 37788999999999762 24567777787752 2333332 23556676663
Q ss_pred ceeEEEEccCCCCHHHHHHHHHH
Q psy9665 71 SLTNIRCGAAPVGKSTLDQVGER 93 (207)
Q Consensus 71 ~lr~~~~~G~~~~~~~~~~~~~~ 93 (207)
.++.+.+.|+ .++.+.+.+.
T Consensus 221 ~v~~V~fTGS---~~~g~~i~~~ 240 (479)
T 2imp_A 221 KVAMVSMTGS---VSAGEKIMAT 240 (479)
T ss_dssp TEEEEEEESC---HHHHHHHHHH
T ss_pred CcCEEEEeCC---HHHHHHHHHH
Confidence 3677776664 3444444433
No 72
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=32.78 E-value=82 Score=26.10 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=37.0
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCC
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPL 63 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~ 63 (207)
.|+++-..+. -+..+|.+|.++++-+. . +...+.+++++.. ++++.+ -+..-..|++++.
T Consensus 155 ~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p~ 226 (506)
T 3rh9_A 155 VPWNFPIGMIAKKLSAALAAGCPSVIKPASETPLTMIAFFSVMDKLDLPDGMVNLVMGKASVIGKVLCEHKD 226 (506)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHTTTTCCTTSEEECCSCHHHHHHHHHHCTT
T ss_pred CCCchHHHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHHHHHHhCcChhhEEEEeCCChHHHHHHHhCCC
Confidence 4555443333 37788999999999762 2 4566677777652 233444 2356677877753
No 73
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=32.20 E-value=64 Score=26.67 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=45.7
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhc-Cce---Eeec-cHHHHHHHHhCCCCCCCCCCc
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKY-RVT---LLPA-VPPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~-~~t---~~~~-~P~~~~~l~~~~~~~~~~l~~ 71 (207)
..|.++-..+. -+..+|.+|.++++-+. . +...+.+++++. ... ++.+ -+..-..|+++ +.
T Consensus 166 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ealP~gvv~vv~g~~~~~g~~L~~~--------p~ 237 (495)
T 1wnd_A 166 IAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTGH--------PK 237 (495)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHTTTSCTTSEEECCCCTTTTHHHHHTC--------TT
T ss_pred ECCCcchHHHHHHHHHHHHHcCCeeEeeCCCCChHHHHHHHHHHHHhCCcCeEEEEeCCCHHHHHHHHhC--------CC
Confidence 35666544333 47788999999999762 2 456667777663 222 2322 12244556554 34
Q ss_pred eeEEEEccCCCCHHHHHHHHHH
Q psy9665 72 LTNIRCGAAPVGKSTLDQVGER 93 (207)
Q Consensus 72 lr~~~~~G~~~~~~~~~~~~~~ 93 (207)
++.+.+.|+ .++.+.+.+.
T Consensus 238 vd~I~FTGS---~~~G~~i~~~ 256 (495)
T 1wnd_A 238 VRMVSLTGS---IATGEHIISH 256 (495)
T ss_dssp EEEEEEESC---HHHHHHHHHH
T ss_pred cCEEEEECc---HHHHHHHHHH
Confidence 777776663 3444444444
No 74
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=31.79 E-value=1.1e+02 Score=25.40 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=42.2
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC----CCHHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH----FDGHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~~~~~~~l~ 70 (207)
..|.++-..+. -+..+|.+|.++++-+. .+...+.+++++.. ++++.+. +..-..|.+++.
T Consensus 169 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p~------- 241 (515)
T 2d4e_A 169 ITPWNAPLMLSTWRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFNLVQGFGEEAGAALVAHPL------- 241 (515)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCTTTHHHHHHHCTT-------
T ss_pred ECCCCchhhhhhhhhhHHHHcCCeeeecCCCCcHHHHHHHHHHHHHhCCCcCeEEEEeCCchHHHHHHHhCCC-------
Confidence 35665544433 47788999999999762 24567778887762 2333332 345666777643
Q ss_pred ceeEEEEcc
Q psy9665 71 SLTNIRCGA 79 (207)
Q Consensus 71 ~lr~~~~~G 79 (207)
++.+.+.|
T Consensus 242 -vd~I~FTG 249 (515)
T 2d4e_A 242 -VPLLTLTG 249 (515)
T ss_dssp -CCEEEEES
T ss_pred -cCEEEEeC
Confidence 55565555
No 75
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=31.74 E-value=1.1e+02 Score=25.22 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=41.6
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~~~~~~l~ 70 (207)
..|.++-..+. -+..+|.+|.++++-+. . +...+.+++++.. ++++.+ -+..-..|++++
T Consensus 166 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gv~~vv~g~~~~~g~~L~~~~-------- 237 (501)
T 1bxs_A 166 IIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHM-------- 237 (501)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHTCT--------
T ss_pred ECCCcchHHHHHHHHHHHHHcCCeeeccCCCccHHHHHHHHHHHHHhCCCcceEEEEecCchHHHHHHHhCC--------
Confidence 45666544333 47788999999999762 3 4566777777752 233333 233566677664
Q ss_pred ceeEEEEcc
Q psy9665 71 SLTNIRCGA 79 (207)
Q Consensus 71 ~lr~~~~~G 79 (207)
.++.+.+.|
T Consensus 238 ~v~~I~FTG 246 (501)
T 1bxs_A 238 DVDKVAFTG 246 (501)
T ss_dssp TCSEEEEES
T ss_pred CcCEEEEEC
Confidence 355565555
No 76
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=31.04 E-value=99 Score=25.27 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLV 55 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~ 55 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...+...
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 131 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV 131 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh
Confidence 35888899999999887 57889999999999999887765543
No 77
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=30.86 E-value=52 Score=25.57 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhCCeEEEeC--CCCHHHHHHHHHh
Q psy9665 8 HGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEK 42 (207)
Q Consensus 8 h~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~ 42 (207)
...|++.+.+++..|+.+++.| +|+.+.+.+.+++
T Consensus 171 R~aG~lAl~a~lA~ga~~iliPE~~~~~~~i~~~i~~ 207 (319)
T 1zxx_A 171 RNCGDIAMRVGVACGADAIVIPERPYDVEEIANRLKQ 207 (319)
T ss_dssp TTCCHHHHHHHHHTTCSEEECTTSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHH
Confidence 4467888889999999999998 6888888776654
No 78
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=30.72 E-value=1e+02 Score=25.38 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLVVFL 58 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 58 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...+.....+
T Consensus 90 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 90 MPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred HHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 35888899999999887 57889999999999999988776554443
No 79
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=30.72 E-value=73 Score=26.66 Aligned_cols=69 Identities=16% Similarity=0.316 Sum_probs=39.8
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-CC---HHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-FD---GHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~~~~~~l~ 70 (207)
..|.++-..+. -+..+|.+|.++++-+. .. ...+.+++++.. ++++.+ -+..-..|++++
T Consensus 179 I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p-------- 250 (538)
T 3qan_A 179 ISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHP-------- 250 (538)
T ss_dssp ECCSTTTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCCTTSEEECCBCTTTTHHHHHHCT--------
T ss_pred ECCCchHHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHhCC--------
Confidence 34555533333 47788999999999773 33 455666777642 233333 223556666653
Q ss_pred ceeEEEEcc
Q psy9665 71 SLTNIRCGA 79 (207)
Q Consensus 71 ~lr~~~~~G 79 (207)
.++.+.+.|
T Consensus 251 ~v~~I~FTG 259 (538)
T 3qan_A 251 KTSLITFTG 259 (538)
T ss_dssp TEEEEEEES
T ss_pred CcCEEEEEC
Confidence 355566555
No 80
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=30.37 E-value=54 Score=25.50 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhCCeEEEeC--CCCHHHHHHHHHh
Q psy9665 8 HGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEK 42 (207)
Q Consensus 8 h~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~ 42 (207)
...|++.+.+++..|+.+++.| +|+.+.+.+.+++
T Consensus 172 R~aG~lAl~a~lA~ga~~iliPE~~~~~~~i~~~i~~ 208 (320)
T 1pfk_A 172 RYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKA 208 (320)
T ss_dssp TTCCHHHHHHHHHTTCSEEECTTSCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHH
Confidence 4467888889999999999998 6888888776654
No 81
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=30.34 E-value=1.1e+02 Score=25.26 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLVVF 57 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 57 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...+.....
T Consensus 92 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~ 137 (549)
T 3g7s_A 92 MTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137 (549)
T ss_dssp HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHH
T ss_pred HHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHH
Confidence 35888899999999887 5788999999999999998877655443
No 82
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=29.76 E-value=1.1e+02 Score=25.23 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLVVF 57 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 57 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...+.....
T Consensus 87 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 132 (541)
T 1v25_A 87 EAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPL 132 (541)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred HHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHH
Confidence 35888899999999887 5788999999999999998877655443
No 83
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=28.51 E-value=1.1e+02 Score=25.35 Aligned_cols=43 Identities=5% Similarity=0.043 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLV 55 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~ 55 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...+...
T Consensus 92 ~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 135 (548)
T 2d1s_A 92 IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL 135 (548)
T ss_dssp HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH
T ss_pred HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH
Confidence 35788899999999887 57889999999999999887765443
No 84
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=28.50 E-value=1.2e+02 Score=25.10 Aligned_cols=68 Identities=12% Similarity=-0.029 Sum_probs=38.9
Q ss_pred cccchHHHH--HHHHHHHHhCCeEEEeCC-CCH---HHHHHHHHh------cC---ceEeeccHHHHHHHHhCCCCCCCC
Q psy9665 4 VPFFHGYGL--LLMLQAICMNNKLVVLPH-FDG---HLFLSSIEK------YR---VTLLPAVPPLVVFLAKSPLVDQYD 68 (207)
Q Consensus 4 ~Pl~h~~g~--~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~------~~---~t~~~~~P~~~~~l~~~~~~~~~~ 68 (207)
.|.++-..+ +-+..+|.+|.++++-+. ..| ..+.+++++ .. ++++.+-+..-..|.+++.
T Consensus 165 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~----- 239 (500)
T 2j6l_A 165 TAFNFPVAVYGWNNAIAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDER----- 239 (500)
T ss_dssp CCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTT-----
T ss_pred CCCcchhhHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCC-----
Confidence 455544323 347788999999999773 333 344555543 22 3444443455667777643
Q ss_pred CCceeEEEEcc
Q psy9665 69 LSSLTNIRCGA 79 (207)
Q Consensus 69 l~~lr~~~~~G 79 (207)
++.+.+.|
T Consensus 240 ---vd~I~FTG 247 (500)
T 2j6l_A 240 ---VNLLSFTG 247 (500)
T ss_dssp ---CSEEEEES
T ss_pred ---cCEEEEEC
Confidence 55555555
No 85
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=27.62 E-value=1e+02 Score=25.59 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=46.6
Q ss_pred cccchHHHH--HHHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCCCCCCCCCCc
Q psy9665 4 VPFFHGYGL--LLMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 4 ~Pl~h~~g~--~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~~~~~~~l~~ 71 (207)
.|.++-..+ .-+..+|.+|.++++-+. . ....+.+++++.. ++++.+ -+..-..|++++ .
T Consensus 181 ~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~~~~~~~~L~~~~--------~ 252 (516)
T 1uzb_A 181 APWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHP--------R 252 (516)
T ss_dssp CCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHHTCCTTSEEECCCSSSHHHHHHHTCT--------T
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHhCCCcCeEEEEeCCCchhhhhhhcCC--------C
Confidence 455543333 247788999999999773 2 4556677777752 233333 234566677664 3
Q ss_pred eeEEEEccCCCCHHHHHHHHHHh
Q psy9665 72 LTNIRCGAAPVGKSTLDQVGERL 94 (207)
Q Consensus 72 lr~~~~~G~~~~~~~~~~~~~~~ 94 (207)
++.+.+.|+ .++.+.+.+..
T Consensus 253 v~~I~FTGS---~~~G~~i~~~a 272 (516)
T 1uzb_A 253 IRFINFTGS---LEVGLKIYEAA 272 (516)
T ss_dssp CCEEEEESC---HHHHHHHHHHH
T ss_pred cCEEEecCC---HHHHHHHHHHh
Confidence 555666553 45555555443
No 86
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=27.35 E-value=1.5e+02 Score=24.46 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=40.5
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhc-C---ceEeec-cHHHHHHHHhCCCCCCCCCCc
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKY-R---VTLLPA-VPPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~-~---~t~~~~-~P~~~~~l~~~~~~~~~~l~~ 71 (207)
..|+++-..+. -+..+|.+|.++++-+. . ....+.+++++. . ++++.+ -+..-..|+.++.
T Consensus 168 I~PwN~P~~~~~~~~a~ALaaGNtVVlKPs~~tp~t~~~l~~l~~ealP~gv~nvv~g~~~~~g~~L~~~p~-------- 239 (498)
T 4f3x_A 168 IAPWNYPLMMMAWKLAPAIGGGNTVVFKPSEQTPLTALKLARLIADILPEGVVNVITGRGETVGNALINHPK-------- 239 (498)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHTTSCTTSEEECCCCTTTHHHHHHTCTT--------
T ss_pred ECCCchHHHHHHHHHHHHHHcCCeEEEECCcccHHHHHHHHHHHHHhCCcCeEEEEeCCchHHHHHHHhCCC--------
Confidence 35666555444 36788999999999773 3 345666666654 2 233333 2346667776643
Q ss_pred eeEEEEcc
Q psy9665 72 LTNIRCGA 79 (207)
Q Consensus 72 lr~~~~~G 79 (207)
++.+.+.|
T Consensus 240 v~~V~FTG 247 (498)
T 4f3x_A 240 VGMVSITG 247 (498)
T ss_dssp CCEEEEES
T ss_pred cCEEEEEC
Confidence 54555555
No 87
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=27.18 E-value=1.2e+02 Score=24.72 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=46.4
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeecc-HHHHHHHHhCCCCCCCCCCc
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSPLVDQYDLSS 71 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~~~~~~~l~~ 71 (207)
.|.++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+. +..-..|++++.
T Consensus 151 ~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~~~~~~L~~~~~-------- 222 (475)
T 1euh_A 151 SPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQA-------- 222 (475)
T ss_dssp CCTTSTTHHHHHHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHHHTCCTTTEEECCCCHHHHHHHHHHCTT--------
T ss_pred CCCCchHHHHHHHHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHHhCCCcCeEEEEeCCcHHHHHHHHhCCC--------
Confidence 4555543333 47788999999999773 3 3456677777652 2334443 335666777643
Q ss_pred eeEEEEccCCCCHHHHHHHHHH
Q psy9665 72 LTNIRCGAAPVGKSTLDQVGER 93 (207)
Q Consensus 72 lr~~~~~G~~~~~~~~~~~~~~ 93 (207)
++.+.+.|+ .++.+.+.+.
T Consensus 223 v~~V~fTGS---~~~g~~i~~~ 241 (475)
T 1euh_A 223 VNFINFTGS---TGIGERIGKM 241 (475)
T ss_dssp CCEEEEESC---HHHHHHHHHH
T ss_pred cCEEEEECc---hHHHHHHHHh
Confidence 555665553 4555555554
No 88
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=26.86 E-value=1.4e+02 Score=24.55 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=40.4
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeC-CCC---HHHHHHHHHhcC-----ceEeeccHHHHHHHHhCCCCCCCCCCce
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLP-HFD---GHLFLSSIEKYR-----VTLLPAVPPLVVFLAKSPLVDQYDLSSL 72 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~-~~~---~~~~~~~i~~~~-----~t~~~~~P~~~~~l~~~~~~~~~~l~~l 72 (207)
.|.++-..+. -+..+|.+|.++++-+ ... ...+.+++++.. ++++.+.......|+.++ .+
T Consensus 131 ~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~p--------~v 202 (484)
T 3ros_A 131 EPWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGSLINLYPSYDQLADIIADP--------RI 202 (484)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHTCCTTSEEEECCCHHHHHHHHTST--------TE
T ss_pred CCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCChHHHHHHHhCC--------Cc
Confidence 4554443333 3778899999999977 333 455666776652 344444343333366653 36
Q ss_pred eEEEEccC
Q psy9665 73 TNIRCGAA 80 (207)
Q Consensus 73 r~~~~~G~ 80 (207)
+.+.+.|+
T Consensus 203 d~I~fTGS 210 (484)
T 3ros_A 203 QGVALTGS 210 (484)
T ss_dssp EEEEEESC
T ss_pred CEEEEECC
Confidence 66666553
No 89
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=26.63 E-value=1.2e+02 Score=25.02 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=35.5
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeC-CC---CHHHHHHHHHhc----C-----ceEeecc-HHHHHHHHhCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLP-HF---DGHLFLSSIEKY----R-----VTLLPAV-PPLVVFLAKSP 62 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~-~~---~~~~~~~~i~~~----~-----~t~~~~~-P~~~~~l~~~~ 62 (207)
..|.++-..+. -+..+|.+|.++++-+ .. ....+.+++++. . ++++.+. +..-..|++++
T Consensus 137 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p 212 (486)
T 3pqa_A 137 ITPFNFPLNLSAHKIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNE 212 (486)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCT
T ss_pred ECCCchHHHHHHHHHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCC
Confidence 34556555444 3678899999999966 23 455666666665 2 2333332 23456777664
No 90
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=26.00 E-value=1.2e+02 Score=25.25 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=35.7
Q ss_pred HHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHHHH
Q psy9665 14 LMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLVVF 57 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 57 (207)
.+++++..|+..+.++ .+.++.+...+++.++.++...+.....
T Consensus 115 ~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 159 (570)
T 3c5e_A 115 VILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE 159 (570)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHH
T ss_pred HHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHH
Confidence 5888899999999887 5788899999999999988876554443
No 91
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=25.94 E-value=1.3e+02 Score=24.68 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=40.3
Q ss_pred cccchHHHH--HHHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhc--CceEeeccH-------HHHHHHHhCCCCCCCC
Q psy9665 4 VPFFHGYGL--LLMLQAICMNNKLVVLPH-F---DGHLFLSSIEKY--RVTLLPAVP-------PLVVFLAKSPLVDQYD 68 (207)
Q Consensus 4 ~Pl~h~~g~--~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~--~~t~~~~~P-------~~~~~l~~~~~~~~~~ 68 (207)
.|.++-..+ .-+..+|.+|.++++-+. . +...+.+++++. ...++..++ ..-..|++++
T Consensus 154 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~~~~g~~~~~~~~L~~~~------ 227 (487)
T 2w8n_A 154 TPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDP------ 227 (487)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCCCHHHHHHHHHHHTTCT------
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCCCeEEEEecCCCCcHHHHHHHHhCC------
Confidence 455443333 247788999999999762 2 456677788775 333333333 2445565543
Q ss_pred CCceeEEEEcc
Q psy9665 69 LSSLTNIRCGA 79 (207)
Q Consensus 69 l~~lr~~~~~G 79 (207)
.++.+.+.|
T Consensus 228 --~v~~V~fTG 236 (487)
T 2w8n_A 228 --LVSKISFTG 236 (487)
T ss_dssp --TEEEEEEEE
T ss_pred --CcCEEEEeC
Confidence 466676655
No 92
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=25.54 E-value=1.2e+02 Score=24.85 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLV 55 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~ 55 (207)
..+++++..|+..+..+ .+.++.+...+++.++.++...+...
T Consensus 89 ~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~ 132 (536)
T 3ni2_A 89 LAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYY 132 (536)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT
T ss_pred HHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH
Confidence 35888899999999887 57889999999999999988765443
No 93
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=25.30 E-value=1.1e+02 Score=25.39 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=36.5
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeC-CCCH----HHHHHHHHhcC-----ceEeecc-HHHHHHHHhCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLP-HFDG----HLFLSSIEKYR-----VTLLPAV-PPLVVFLAKSP 62 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~-~~~~----~~~~~~i~~~~-----~t~~~~~-P~~~~~l~~~~ 62 (207)
..|.++-..+. -+..+|.+|.++++-+ ...| ..+.+++.+.. ++++.+. +...+.|++++
T Consensus 155 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~~l~~ll~~aGlP~gvv~vv~g~~~~~g~~L~~~p 227 (508)
T 3r64_A 155 ISPWNFPLNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVAGAGSEIGDHFVTHA 227 (508)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCHHHHTHHHHHHHHTTTCCTTTEEECCCCTTTTHHHHHHCS
T ss_pred ECCCcchHHHHHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHHhCcCcCeEEEEeCCCHHHHHHHhhCC
Confidence 34555555444 3778899999999977 3443 45566776653 2333332 44667777664
No 94
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=25.14 E-value=1.3e+02 Score=24.50 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=36.8
Q ss_pred HHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHHHH
Q psy9665 14 LMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLVVF 57 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 57 (207)
.+++++..|+..+.++ .+.++.+...+++.++.++...+.....
T Consensus 72 ~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 72 LIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred HHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 5888899999999887 5788999999999999998876655444
No 95
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=24.27 E-value=2.8e+02 Score=24.20 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=40.2
Q ss_pred hCCeEEEeC-CCCHHHHHHHHHhcCceEeecc----H-----HHHHHHHhCCCCCCCCCC-ceeEEEEccCCCCHHHHH
Q psy9665 21 MNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAV----P-----PLVVFLAKSPLVDQYDLS-SLTNIRCGAAPVGKSTLD 88 (207)
Q Consensus 21 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~----P-----~~~~~l~~~~~~~~~~l~-~lr~~~~~G~~~~~~~~~ 88 (207)
.|-.++.+. ...++.+++.+.++++.++.++ + ..+..+.+..+ ...+. +++ +++||.+++++..+
T Consensus 633 aGFEVIDLGvdVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLr--E~GlrDkIk-VIVGGa~~tqd~Ak 708 (763)
T 3kp1_A 633 YGVEVHYLGTSVPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAV--EKGIRDKIM-IGCGGTQVTPEVAV 708 (763)
T ss_dssp GTCEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHH--HTTCTTTSE-EEEECTTCCHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHH--hcCCCCCCE-EEEECCCCCHHHHH
Confidence 477887776 5689999999999999886543 2 12222222211 11122 243 67799999877543
No 96
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=23.81 E-value=1.2e+02 Score=24.87 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=34.1
Q ss_pred cccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC-----ceEeec-cHHHHHHHHhCC
Q psy9665 4 VPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR-----VTLLPA-VPPLVVFLAKSP 62 (207)
Q Consensus 4 ~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~~~~l~~~~ 62 (207)
.|.++-..+. -+..+|.+|.++++-+. . ....+.+++++.. ++++.+ -+..-..|..++
T Consensus 147 ~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~~ 217 (478)
T 3ty7_A 147 TPWNFPTNQTSLKLAAAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGDGAGVGNPLSEHP 217 (478)
T ss_dssp CCSSSTTHHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHHTCCTTTEEECCCCTTTTHHHHHHCT
T ss_pred CCCcchHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEECCChHHHHHHHhCC
Confidence 4444443333 47788999999999763 2 4556667776652 233333 224555666654
No 97
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=23.75 E-value=1.6e+02 Score=23.86 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeec--cHHHHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPA--VPPLVVFL 58 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~--~P~~~~~l 58 (207)
..+++++..|+..+.++ .+.++.+...+++.+++.+.. .+.....+
T Consensus 69 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 69 IAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred HHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 35888899999999887 578899999999999998877 55444433
No 98
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=23.62 E-value=1.6e+02 Score=23.94 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPP 53 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~ 53 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...+.
T Consensus 83 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (517)
T 3r44_A 83 CLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAP 124 (517)
T ss_dssp HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG
T ss_pred HHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCc
Confidence 35888999999999887 578889999999999998876543
No 99
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=21.99 E-value=1.6e+02 Score=23.73 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeecc
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAV 51 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~ 51 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...
T Consensus 63 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~ 102 (501)
T 3ipl_A 63 ILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCT 102 (501)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEc
Confidence 35888999999999987 5789999999999999887653
No 100
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=21.83 E-value=1.5e+02 Score=24.94 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=38.9
Q ss_pred ccccchHHHHHH--HHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC--ceEeecc----HHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLLL--MLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR--VTLLPAV----PPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~~--~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~~~~~----P~~~~~l~~~~~~~~~~l~ 70 (207)
..|+++-..+.. +..+| +|.++++-|. . ....+.+++++.. ..++..+ +.+-..|+.++
T Consensus 207 I~PwNfP~~~~~~~~apAL-aGNtVVlKPs~~tp~sa~~l~~ll~eAGlP~Gvvnvv~g~g~~~g~~L~~hp-------- 277 (563)
T 4e3x_A 207 ISPFNFTAIGGNLAGAPAL-MGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSE-------- 277 (563)
T ss_dssp ECCSSCHHHHHHHHHHHHH-TTCCEEEECCGGGHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTTCT--------
T ss_pred ECCchHHHHHHHHHHHHhh-cCCEEEEECCCCChHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHhCC--------
Confidence 456666554432 33445 7999998763 2 4456677777753 3333333 23456676653
Q ss_pred ceeEEEEccC
Q psy9665 71 SLTNIRCGAA 80 (207)
Q Consensus 71 ~lr~~~~~G~ 80 (207)
.++.+.+.|+
T Consensus 278 ~v~~I~FTGS 287 (563)
T 4e3x_A 278 HLCGINFTGS 287 (563)
T ss_dssp TEEEEEEESC
T ss_pred CcCEEEEECC
Confidence 3656666553
No 101
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.76 E-value=2.2e+02 Score=20.08 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=46.8
Q ss_pred chHHHHHHHHHH-HHhCCeEEEeC-CCCHHHHHHHHHhcCceEeecc---H---HHHHHHHhCCCCCCCCC-CceeEEEE
Q psy9665 7 FHGYGLLLMLQA-ICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAV---P---PLVVFLAKSPLVDQYDL-SSLTNIRC 77 (207)
Q Consensus 7 ~h~~g~~~~~~~-l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~---P---~~~~~l~~~~~~~~~~l-~~lr~~~~ 77 (207)
.|..|...+... -..|-.++.+. ...++.+.+.++++++.++..+ + ..++.+.+..+ ...+ ++++ +++
T Consensus 100 ~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~--~~~~~~~~~-v~v 176 (210)
T 1y80_A 100 LHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALI--AAGLRDRVK-VIV 176 (210)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHH--HTTCGGGCE-EEE
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHH--hcCCCCCCe-EEE
Confidence 477777653333 45677887776 5678999999999998876532 1 12233322211 1111 2344 777
Q ss_pred ccCCCCHHHH
Q psy9665 78 GAAPVGKSTL 87 (207)
Q Consensus 78 ~G~~~~~~~~ 87 (207)
||.+++++..
T Consensus 177 GG~~~~~~~~ 186 (210)
T 1y80_A 177 GGAPLSQDFA 186 (210)
T ss_dssp ESTTCCHHHH
T ss_pred ECCCCCHHHH
Confidence 8888887654
No 102
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=21.53 E-value=1.5e+02 Score=24.28 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=36.1
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-CC---H-HHHHHHHHhcC-----ceEeeccH-HHHHHHHhCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-FD---G-HLFLSSIEKYR-----VTLLPAVP-PLVVFLAKSP 62 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~~---~-~~~~~~i~~~~-----~t~~~~~P-~~~~~l~~~~ 62 (207)
..|.++-..+. -+..+|.+|.++++-+. .. . ..+.+++.+.. ++++.+.. .....|++++
T Consensus 150 I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~~l~~~l~~aGlP~gvv~vv~g~~~~~~~~L~~~p 222 (485)
T 4dng_A 150 ISPFNFPMNLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPAGVLNVMLTDVKEIGDGMLTNP 222 (485)
T ss_dssp ECCSSSHHHHHHHHHHHHHHTTCEEEEECCGGGHHHHTHHHHHHHHHTTCCTTSEEECCCCHHHHTTHHHHCS
T ss_pred ECCCccHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHHhCcCCCeEEEEeCCChhHHHHHHhCC
Confidence 34555554444 37788999999999773 33 3 55666777652 23333333 3556777764
No 103
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=21.30 E-value=17 Score=32.80 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=32.4
Q ss_pred HHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHH
Q psy9665 14 LMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPP 53 (207)
Q Consensus 14 ~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~ 53 (207)
.+++++..|+..+.++ .+.++.+...+++.++.++...+.
T Consensus 129 ~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 169 (979)
T 3tsy_A 129 SFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEAR 169 (979)
T ss_dssp HHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECST
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChH
Confidence 5788899999988887 578888888899988888776543
No 104
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=21.21 E-value=1.3e+02 Score=18.23 Aligned_cols=11 Identities=9% Similarity=-0.155 Sum_probs=5.0
Q ss_pred eEEEEeCCCCC
Q psy9665 134 KMKVLVKSHTM 144 (207)
Q Consensus 134 ~~~i~d~~~~~ 144 (207)
+++++|.+|+|
T Consensus 4 ~v~V~d~~GkP 14 (82)
T 3e8v_A 4 SVLVTDAEGQP 14 (82)
T ss_dssp EEEEECTTSCB
T ss_pred EEEEEcCCCCC
Confidence 34444444443
No 105
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=20.83 E-value=1.1e+02 Score=23.80 Aligned_cols=34 Identities=12% Similarity=0.380 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCeEEEeC--CCCHHHHHHHHHh
Q psy9665 9 GYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEK 42 (207)
Q Consensus 9 ~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~ 42 (207)
-.|++.+.+++..|+..++.| +|+.+.+.+.+++
T Consensus 172 ~aG~lA~~a~la~ga~~iliPE~~~~~~~~~~~i~~ 207 (319)
T 4a3s_A 172 HAGDIALWAGLAGGAESILIPEADYDMHEIIARLKR 207 (319)
T ss_dssp TCCHHHHHHHHHHTCSEEEBTTBCCCHHHHHHHHHH
T ss_pred chhHHHHHHHhccCCCEEEecCCCCCHHHHHHHHHH
Confidence 467778888999999999998 7888888877753
No 106
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=20.69 E-value=1.9e+02 Score=23.99 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCeEEEeC-CCCHHHHHHHHHhcCceEeeccHHHHHH
Q psy9665 13 LLMLQAICMNNKLVVLP-HFDGHLFLSSIEKYRVTLLPAVPPLVVF 57 (207)
Q Consensus 13 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 57 (207)
..+++++..|+..+.++ .+.++.+...+++.++.++...+.....
T Consensus 104 ~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 104 IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred HHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 35888899999999887 5788999999999999998877654443
No 107
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=20.27 E-value=1.9e+02 Score=26.53 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=47.5
Q ss_pred ccccchHHHHH--HHHHHHHhCCeEEEeCC-C---CHHHHHHHHHhcC--ceE---eecc-HHHHHHHHhCCCCCCCCCC
Q psy9665 3 LVPFFHGYGLL--LMLQAICMNNKLVVLPH-F---DGHLFLSSIEKYR--VTL---LPAV-PPLVVFLAKSPLVDQYDLS 70 (207)
Q Consensus 3 ~~Pl~h~~g~~--~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~---~~~~-P~~~~~l~~~~~~~~~~l~ 70 (207)
..|+++-..+. .+..+|.+|.++++-|. . ....+.+++++.. ..+ +.+. +.+-..|+.++
T Consensus 673 I~PwNfPl~i~~~~~a~ALaaGNtVVlKPse~tplsa~~l~ell~eAGlP~gvvnvV~G~g~~vg~~L~~hp-------- 744 (1026)
T 4f9i_A 673 IAPWNFPLAISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDYLVDHP-------- 744 (1026)
T ss_dssp ECCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHHHCT--------
T ss_pred eCCCccHHHHHHHHHHHHHHcCCEEEEEcCccchHHHHHHHHHHHHhCcCCCeEEEEecCcHHHHHHHHhCC--------
Confidence 45666633332 47788999999999773 2 4556677777753 233 3332 24567777764
Q ss_pred ceeEEEEccCCCCHHHHHHHHHHh
Q psy9665 71 SLTNIRCGAAPVGKSTLDQVGERL 94 (207)
Q Consensus 71 ~lr~~~~~G~~~~~~~~~~~~~~~ 94 (207)
.++.+.+.|+ .++.+.+.+..
T Consensus 745 ~v~~V~FTGS---t~vg~~I~~~a 765 (1026)
T 4f9i_A 745 DISLIAFTGS---METGLRIIERA 765 (1026)
T ss_dssp TEEEEEEESC---HHHHHHHHHHH
T ss_pred CCCEEEeCCC---HHHHHHHHHHh
Confidence 3666666663 34444444443
Done!