RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9665
(207 letters)
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 147 bits (374), Expect = 3e-42
Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 3/139 (2%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+ +PF+H YGL L ++ ++++P FD FL IEKY+VT L VPP+ V LAK
Sbjct: 194 LTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAK 253
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL- 119
SPLVD+YDLSSL I GAAP+ K +++ +R ++KQGYGMTE T +
Sbjct: 254 SPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPN--TTIKQGYGMTETGPATTLTPPG 311
Query: 120 DVPSSSVGKVMPSMKMKVL 138
D SVG+++P+++ K++
Sbjct: 312 DEKPGSVGRLVPNVEAKIV 330
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 140 bits (356), Expect = 2e-39
Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 6/142 (4%)
Query: 1 MALVPFFHGYGLLLMLQAICMN-NKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ ++P FH YGL ++L A+ +VV+P FD FL++IEKY+VT LP VPP+V+ L
Sbjct: 205 LCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALV 264
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL 119
K P+VD+YDLSSL I GAAP+GK + R + QGYGMTE + + T +
Sbjct: 265 KHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGV--ELGQGYGMTESSPVTTMCPV 322
Query: 120 ---DVPSSSVGKVMPSMKMKVL 138
D SVG+++P+++ K++
Sbjct: 323 PEKDPKPGSVGRLVPNVEAKIV 344
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 99.1 bits (248), Expect = 6e-25
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV 64
P +H G L +L A+ +V++P FD L IE++RVT VP + L + P
Sbjct: 50 PLYHAAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDF 109
Query: 65 DQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPS- 123
+YDLSSL I GAAP+ + E G QGYGMTE T +
Sbjct: 110 ARYDLSSLRLIIYGAAPMPAELKRAMIEWFG---PVFVQGYGMTETGPTTTLLSPEDWLR 166
Query: 124 --SSVGKVMPSMKMKVL 138
SVG+ +P ++++++
Sbjct: 167 KLGSVGRPVPGVEVRIV 183
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 100 bits (251), Expect = 1e-24
Identities = 50/145 (34%), Positives = 89/145 (61%), Gaps = 9/145 (6%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ ++P FH Y L ++L + + ++++P F+ L I++++VT+ P VPP+V+ +A
Sbjct: 228 LCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIA 287
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE----LTILVT 115
KSP+V++YDLSS+ + GAAP+GK D +L ++ + QGYGMTE L + +
Sbjct: 288 KSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAV--LGQGYGMTEAGPVLAMCLA 345
Query: 116 FSD--LDVPSSSVGKVMPSMKMKVL 138
F+ V S S G V+ + ++K++
Sbjct: 346 FAKEPFPVKSGSCGTVVRNAELKIV 370
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 97.2 bits (243), Expect = 3e-24
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 4 VPFFHGYGLLLMLQAICMNN-KLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP 62
VP FH +GL+L + A LV++ FD L IE+ R+T L VP + + L + P
Sbjct: 50 VPLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHP 109
Query: 63 LVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVP 122
D++DLSSL G APV + ++ E M + GYGMTE + + T + D P
Sbjct: 110 DFDKFDLSSLRTGISGGAPVPPELVRRIREEFP--MAEITTGYGMTETSGVGTQTSGDDP 167
Query: 123 ----SSSVGKVMPSMKMKVL 138
+VG+ +P +++K++
Sbjct: 168 YEDRPGTVGRPLPGVEVKIV 187
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 93.9 bits (234), Expect = 1e-22
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHF--DGHLFLSSIEKYRVTLLPAVPPLVVFL 58
+ L+P + + + LV++P F D L IEKY+VT+L VP L+ L
Sbjct: 176 LLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLL 235
Query: 59 AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS- 117
K+P +YDLSSL + G P+ L ++ ER G + GYG TE T++ T +
Sbjct: 236 LKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFG--GVPLVNGYGPTETTVVATANL 293
Query: 118 --DLDVPSSSVGKVMPSMKMKVL 138
D +V S+G+ +P +++KVL
Sbjct: 294 PGDPEVKPGSIGRPLPGVEVKVL 316
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 89.1 bits (222), Expect = 8e-21
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ +P FH +GL + ML + + V++P+F L I++YR T+ P VP L L
Sbjct: 172 LTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALL 231
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL 119
P +YD SSL G AP+ ++ E+ G + +GYG+TE + + T + L
Sbjct: 232 NHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTGA---PLVEGYGLTETSPVTTVNPL 288
Query: 120 DVP--SSSVGKVMPSMKMKVL 138
D S+G +P ++K++
Sbjct: 289 DGERKPGSIGLPLPGTEVKIV 309
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 89.1 bits (222), Expect = 9e-21
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+ +VP FH + L A+ K V+ FD L IE RVT AVP + L K
Sbjct: 212 LVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLK 271
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD 120
+P D SSL + G A + + L + E+ G+ + QGYGMTE + +V+ +
Sbjct: 272 APRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGI---DLVQGYGMTETSPVVSVLPPE 328
Query: 121 --VPS-----SSVGKVMPSMKMKVL 138
+P S G+ +P ++ +++
Sbjct: 329 DQLPGQWTKRRSAGRPLPGVEARIV 353
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 86.0 bits (213), Expect = 1e-19
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 1 MALVPFFHGYGLLLMLQAICMN-NKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLVVF 57
++ +P FH +GL++ L A + LV+L FD L IEKY+VT+L VP +
Sbjct: 218 LSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE 277
Query: 58 LAKSPLVDQYDLSS-LTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTF 116
L +P D DLSS L + G AP+ L++ ER G ++ +GYG+TE + +VT
Sbjct: 278 LLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFG--PIAILEGYGLTETSPVVTI 335
Query: 117 S---DLDVPSSSVGKVMPSMKMKV 137
+ DL SVG+ +P +++++
Sbjct: 336 NPPDDLLAKPGSVGRPLPGVEVRI 359
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 81.2 bits (201), Expect = 3e-18
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 1 MALVPFFHGYGLL-LMLQAICMNNKLVVLPHFDGHL-FLSSIEKYRVTLLPAVPPLVVFL 58
++++P FH G +L A+ +V+ F L FL IE+YRVT+L VP L L
Sbjct: 45 LSVLPLFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL 104
Query: 59 AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE--LTILVTF 116
AK+ YDLSSL + G P+ L++ ER G + +GYG+TE +
Sbjct: 105 AKAAEDRGYDLSSLRLLISGGEPLSPELLERFEERPGA---PILEGYGLTETSVVTSTNP 161
Query: 117 SDLDVPSSSVGKVMPSMKMKVL 138
+VG+ +P ++++V+
Sbjct: 162 DSELKKPGTVGRPVPGVEVRVV 183
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 78.9 bits (195), Expect = 2e-17
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+A +P FH G+ M I LV+L +D +IE+YRVT + +VV L
Sbjct: 129 LAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLL 188
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL-GLSMDSMKQGYGMTELTILVTF 116
P YDLSSL + G A + + V ERL L+ ++GYG+TE F
Sbjct: 189 AHPRFADYDLSSLKVVGGGGAALPPA----VAERLKALTGLLYEEGYGLTETHTCTHF 242
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 78.1 bits (193), Expect = 6e-17
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 1 MALVPFFHGYGLL-LMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVV-FL 58
+A++P FH G++ M I +V++P +D IE+YRVT +P +VV FL
Sbjct: 235 LAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFL 294
Query: 59 AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
A SP + + DLSSL I G A + ++ +++ E GL D + +GYG+TE
Sbjct: 295 A-SPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGL--DYV-EGYGLTE 341
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 73.5 bits (180), Expect = 2e-15
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 13/148 (8%)
Query: 1 MALVPFFHGYGLLLMLQAICMNN-KLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ L+PFFH YG+ + A N K+VV+ F+ FL+++ V+ P VPP+++ L
Sbjct: 231 LGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290
Query: 60 KSPLVDQYDLSSLT--NIRCGAAPVGKSTLDQVGERL-GLSMDSMKQGYGMTELT-ILVT 115
K+P+V+++DLS L I AAP+ L + G+ +++ YG+TE + I +T
Sbjct: 291 KNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGV---QVQEAYGLTEHSCITLT 347
Query: 116 FSDLD-----VPSSSVGKVMPSMKMKVL 138
D + +SVG ++P++++K +
Sbjct: 348 HGDPEKGHGIAKKNSVGFILPNLEVKFI 375
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 73.1 bits (179), Expect = 3e-15
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 1 MALVPFFHGYGLLLMLQ-AICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ ++PFFH YG+ ++ +I K+V++P FD + +I+K++VTL P P + + L
Sbjct: 253 LGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALL 312
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
SPL+ +YD+SS+ G+AP+ ++ G + +GYG+TE
Sbjct: 313 NSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTG---GKLVEGYGLTE 359
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 71.4 bits (175), Expect = 1e-14
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+A +P FH YGL L ++ + + + +VV+ FD + I++++VT P VPP+++ L
Sbjct: 248 LAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALT 307
Query: 60 KSPL-VDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVT--F 116
K V L SL + CGAAP+ + + L QGYGMTE T + T F
Sbjct: 308 KKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQ--TLPHVDFIQGYGMTESTAVGTRGF 365
Query: 117 SDLDVPS-SSVGKVMPSMKMKVL 138
+ + SSVG + P+M+ KV+
Sbjct: 366 NTEKLSKYSSVGLLAPNMQAKVV 388
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 71.5 bits (176), Expect = 1e-14
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 1 MALVPFFHGYGLL--LMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFL 58
+A++P H + L +L A+ +V+ + IE+ +VT VP L+
Sbjct: 184 LAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLW 243
Query: 59 AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD 118
++ DQ DLSSL I+ G AP+ +V ERLG ++Q +GM E + T D
Sbjct: 244 LEAAEWDQADLSSLRVIQVGGAPLSPELARRVEERLGC---PLQQVFGMAEGLVNYTRLD 300
Query: 119 LDVPS 123
D P
Sbjct: 301 -DPPD 304
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 68.4 bits (168), Expect = 1e-13
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 5 PFFHGYGLLL-MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
P H G L + + + +V+ +D L I ++ VT P + L +
Sbjct: 142 PLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAAD 201
Query: 64 VDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPS 123
DL SL CG APV + + E LG + YGMTE LVT D P
Sbjct: 202 AAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVR---AYGMTE-VPLVTVGTPDDPD 257
Query: 124 ----SSVGKVMPSMKMKVL 138
++ G+ +P ++++++
Sbjct: 258 DKRAATDGRPVPGVEVRIV 276
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 66.6 bits (163), Expect = 4e-13
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 3 LVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP 62
L P G +++ N VV F +E+YRVTLL AVP ++ L + P
Sbjct: 63 LAPLARG-ATVVLPTPSGFRNPAVV------ANFWKIVERYRVTLLSAVPTVLAALLQVP 115
Query: 63 LVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT--ILVTFSDLD 120
L D D+SSL GAAP+ + G+ + +GYGMTE T +
Sbjct: 116 LGDA-DISSLRYALTGAAPLPVEVARRFEAVTGV---PVVEGYGMTEGTGVSAINPRGGP 171
Query: 121 VPSSSVGKVMPSMKMKVLV 139
SVG +P +++V
Sbjct: 172 RRPGSVGLRLPYTRVRVAK 190
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 66.6 bits (163), Expect = 6e-13
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 2 ALVPFFHGYGLLLMLQ-AICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
A +P FH YGL L L A+ + +LV+LP D L L +++K+ T LP VPPL +A+
Sbjct: 267 AALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAE 326
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
+ DLS + N GA + ST V L+ + +GYG+TE
Sbjct: 327 AAEERGVDLSGVRNAFSGAMALPVST---VELWEKLTGGLLVEGYGLTE 372
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 66.1 bits (162), Expect = 8e-13
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPH---------FDGHLFLSSIEKYRVTLLPAV 51
+P FH LL+ A VVL F +E+YR+ L V
Sbjct: 258 FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIAN--FWKIVERYRINFLSGV 315
Query: 52 PPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT 111
P + L + P VD +D+SSL CGAAP+ + G+ + +GYG+TE T
Sbjct: 316 PTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEVFRRFEAATGV---RIVEGYGLTEAT 371
Query: 112 ILVTFSDLDVPS--SSVGKVMPSMKMKVLVK 140
+ + + D SVG +P +++V++
Sbjct: 372 CVSSVNPPDGERRIGSVGLRLPYQRVRVVIL 402
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 63.8 bits (155), Expect = 5e-12
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVL-PHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ ++P FH Y L ++L L+ L FD IE+ R T+ P VP + + LA
Sbjct: 242 ICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALA 301
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL 119
P +++ DLSSL I G AP+ + + GL +K G+GMTE T
Sbjct: 302 NDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKTGL---KLKSGWGMTETCSPGTGHPP 358
Query: 120 DVPSS--SVGKVMPSMKMKVL 138
+ P S+G ++P +++ V+
Sbjct: 359 EGPDKPGSIGLMLPGIELDVV 379
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 63.6 bits (155), Expect = 5e-12
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 4 VPFFHGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKS 61
VP +H +G++L +V P FD L ++E+ R T L VP + +
Sbjct: 249 VPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDH 308
Query: 62 PLVDQYDLSSL-TNIRCGAA---PVGKSTLDQVGERLGLSMDSMKQGYGMTE---LTILV 114
P +DLSSL T I GA V + +D+ + M ++ YGMTE +++
Sbjct: 309 PQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDE------MHMAEVQIAYGMTETSPVSLQT 362
Query: 115 TFSD-LDVPSSSVGKVMPSMKMKVL 138
T +D L+ +VG+ P +++KV+
Sbjct: 363 TAADDLERRVETVGRTQPHLEVKVV 387
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 62.2 bits (152), Expect = 2e-11
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 13/141 (9%)
Query: 5 PFFHGYGLLLMLQAICMNN-KLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
PFFH +G + A M ++ LP FD IE R+T+LP P + L + P
Sbjct: 215 PFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPD 274
Query: 64 VDQYDLSSLTNIRC---GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD 120
DLSSL R GAA + + L++ LG+ D + GYG++E + + TF+ LD
Sbjct: 275 RSAEDLSSL---RLAVTGAASMPVALLERFESELGV--DIVLTGYGLSEASGVTTFNRLD 329
Query: 121 ----VPSSSVGKVMPSMKMKV 137
+ ++G + ++ K+
Sbjct: 330 DDRKTVAGTIGTAIAGVENKI 350
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 59.1 bits (144), Expect = 2e-10
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 5 PFFHGYGLL-LMLQAICMNNKLVVLP--HF--DGHLFLSSIEKYRVTLLPAVPP----LV 55
P +H GL+ +LQ + +V++ F +L +I +YR T+ A P L
Sbjct: 197 PLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYRATVSGA-PNFAYDLC 255
Query: 56 VFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL---GLSMDSMKQGYGMTELTI 112
V + + DLSS GA PV TL++ ER G ++ YG+ E T+
Sbjct: 256 VRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFLPCYGLAEATL 315
Query: 113 LVTFSDLDVP 122
V+
Sbjct: 316 AVSGGPPGAG 325
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 58.4 bits (142), Expect = 2e-10
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFD-GHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+A++PF YGL +L A + LV+ F L + K R+T VP L
Sbjct: 47 LAVLPFSFDYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLL 106
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL-GLSMDSMKQGYGMTELTILVTF-- 116
+ + + D SL + + T+ Q+ + SM YG+TE T+
Sbjct: 107 RLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSM---YGLTEAFRS-TYLP 162
Query: 117 -SDLDVPSSSVGKVMPSMKMKVL 138
+LD S+GK +P++++ V+
Sbjct: 163 PEELDRRPDSIGKAIPNVELWVV 185
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 57.6 bits (140), Expect = 6e-10
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 29/156 (18%)
Query: 1 MALVPFFH--GYGL---LLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPP 53
+ +VP FH +GL M+ A KLV LP + D L IE+ +VT+ VP
Sbjct: 209 LPVVPMFHVNAWGLPYAATMVGA-----KLV-LPGRYLDPASLLDLIEEEKVTVSAGVPT 262
Query: 54 LVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTIL 113
+ + L + DLSSL + G + + +S ++++ E G+ + +GMTE + L
Sbjct: 263 IWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKL-EERGV---EVIHAWGMTETSPL 318
Query: 114 VTFS-------DLDVPS-----SSVGKVMPSMKMKV 137
T S DL + G+ +P +++++
Sbjct: 319 GTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRI 354
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 56.6 bits (137), Expect = 1e-09
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 5 PFFH----GYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
P +H YGL +A + LV+ P FD L IE++R+T + VP + + L K
Sbjct: 204 PLYHSAPNAYGL----RAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLK 259
Query: 61 SP--LVDQYDLSSLTNIRCGAAP----VGKSTLDQVGERLGLSMDSMKQGYGMTELTILV 114
P + +YD+SSL ++ AAP V ++ ++ G + + YG TE + V
Sbjct: 260 LPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGP-------VIYEYYGSTE-SGAV 311
Query: 115 TFSD----LDVPSSSVGKVMPSMKMKVL 138
TF+ L P +VGK P +++ +
Sbjct: 312 TFATSEDALSHP-GTVGKAAPGAELRFV 338
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 55.7 bits (135), Expect = 2e-09
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 1 MALVPFFHGYGLLL-MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ ++P FH +GL++ +L + +V P F F I KYRVT AVP + L
Sbjct: 47 LNVMPLFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILL 106
Query: 60 KSPLVDQYD-LSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
K+ + L IR +AP+ + LD++ +R G+ + + YGMTE
Sbjct: 107 KTAKPNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGV---PVLEAYGMTE 154
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 55.7 bits (135), Expect = 2e-09
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 5 PFFHGYGLLL-MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
P FH + A+ + LV+LP F F + K+ T+ + + L K P
Sbjct: 130 PLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPP 189
Query: 64 -VDQYDLSSLTNIR-CGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD- 120
D D +R AP+ + ER G+ + GYGMTE T + + D
Sbjct: 190 SPDDRDHP----LRFVFGAPLPAAIWPAFEERFGVKLVE---GYGMTE-TGVPIIAPGDP 241
Query: 121 VPSSSVGKVMPSMKMKVL 138
P S G+ P ++++++
Sbjct: 242 APPGSCGRPRPGVEVRIV 259
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 55.3 bits (134), Expect = 4e-09
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV 64
P FH G + A+ + + +V+ FD L I K++ T L VP V L S ++
Sbjct: 256 PMFHATGWAHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVP---VML--SRIL 310
Query: 65 D-------QYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTI--LVT 115
D +YD SSL I + + + E G + ++ YG TE+ + T
Sbjct: 311 DLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNL---YGSTEVAFATIAT 367
Query: 116 FSDLDVPSSSVGKVMPSMKMKVL 138
DL +VG+ + +K+L
Sbjct: 368 PEDLAEAPGTVGRPPKGVTVKIL 390
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 54.7 bits (132), Expect = 5e-09
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 6 FFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVD 65
F +G + +ML A V+ +D I VT A P + L ++
Sbjct: 253 FMYGLMMPVMLGA-----TAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES 307
Query: 66 QYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS----DLDV 121
+SSL C AP+ + +++ LG + S +GMTE VT + +
Sbjct: 308 GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVS---AWGMTE-NGAVTLTKLDDPDER 363
Query: 122 PSSSVGKVMPSMKMKV 137
S++ G +P ++++V
Sbjct: 364 ASTTDGCPLPGVEVRV 379
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 54.5 bits (132), Expect = 6e-09
Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 1 MALVPFFHGYGL---LLMLQAICMNNKLVVLPH-FDGHLFLSSIEKYRVTLLPAVPPLVV 56
+ +P FH +GL LL+ + ++V P+ D I Y+ T+L P +
Sbjct: 190 LGALPLFHAFGLTVTLLL--PLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLR 247
Query: 57 FLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTF 116
A++ D SSL + GA + ++T + E+ G+ + +GYG TE + +++
Sbjct: 248 GYARN--AHPEDFSSLRLVVAGAEKLPEATRELFEEKFGIRI---LEGYGATECSPVISV 302
Query: 117 S-DLDVPSSSVGKVMPSMKMKVL 138
+ + +VG+ +P ++++++
Sbjct: 303 NTPMGNKPGTVGRPLPGIEVRIV 325
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 54.4 bits (131), Expect = 6e-09
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 31 FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQV 90
FD L IEKY VT A P + FL K L YDLSSL P+ +
Sbjct: 263 FDPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDLSK-YDLSSLRYCTTAGEPLNPEVFNTF 321
Query: 91 GERLGLSMDSMKQGYGMTELTILV-TFSDLDVPSSSVGKVMPSMKMKVL 138
E+ G+ + +G+G TE T+ + TF ++ S+GK P + ++
Sbjct: 322 KEKTGI---KLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDII 367
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 54.0 bits (131), Expect = 1e-08
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 32/152 (21%)
Query: 4 VPFFHGYGLLL-MLQAI----CMNNKLVVLPH--FDGHLFLSSIEKYRVTLLPAVPPLVV 56
VP +H +G++L L + M V P FD L+++E+ R T L VP +
Sbjct: 247 VPLYHCFGMVLGNLACVTHGATM-----VYPGEGFDPLATLAAVEEERCTALYGVPTM-- 299
Query: 57 FLAK--SPLVDQYDLSSL-TNIRCGAA-PVGKSTLDQVGERLGLSMDSMKQ---GYGMTE 109
F+A+ P ++DLSSL T I G+ P+ + +V +++ M + YGMTE
Sbjct: 300 FIAELDHPDFARFDLSSLRTGIMAGSPCPI--EVMKRVIDKMH-----MSEVTIAYGMTE 352
Query: 110 ----LTILVTFSDLDVPSSSVGKVMPSMKMKV 137
T T L+ ++VG+ +P +++K+
Sbjct: 353 TSPVSTQTRTDDPLEKRVTTVGRALPHLEVKI 384
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 53.0 bits (128), Expect = 2e-08
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP-- 62
P +H L + A+ + +VV+ FD L+ IE+YRVT VP + V + K P
Sbjct: 195 PLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEE 254
Query: 63 LVDQYDLSSLTNIRCGAAP 81
+ +YD+SSL AAP
Sbjct: 255 VRARYDVSSLRVAIHAAAP 273
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 52.7 bits (127), Expect = 3e-08
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 28 LPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTL 87
FD L +E+Y VT A P L + L YD S L ++ P+ +
Sbjct: 156 GRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDL-SSYDFSHLRHVVSAGEPLNPEVI 214
Query: 88 DQVGERLGLSMDSMKQGYGMTELTILV-TFSDLDVPSSSVGKVMPSMKMKVL 138
D GL ++ GYG TE +LV F ++V S+G+ P ++ ++
Sbjct: 215 DWWRAATGL---PIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAII 263
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 51.9 bits (125), Expect = 6e-08
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 25 LVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGK 84
++VL FD L +IE+ R+T VP ++ L P + DLSSL + GA+P+
Sbjct: 236 VIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSP 295
Query: 85 STLDQVGERLGLSMDSMKQGYGMTELTILVTF-----SDLDVP--SSSVGKVMPSMKMKV 137
L + ER G Q YG TE +++T+ D D P +S G+ P +++ +
Sbjct: 296 VRLAEAIERFG---PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVAL 352
Query: 138 L 138
L
Sbjct: 353 L 353
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 51.5 bits (124), Expect = 7e-08
Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 4 VPFFHGYGL--LLMLQAICMNNKLVVLPHFDGHLFLSS-------IEKYR--VTLLP--A 50
+P FH G+ L + + V P D FL I KYR +T P A
Sbjct: 201 LPLFHDMGMVGFLTVPMYFGAELVKVTP-MD---FLRDPLLWAELISKYRGTMTAAPNFA 256
Query: 51 VPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLD---QVGERLGLSMDSMKQGYGM 107
L L + +DLSSL GA P+ + ++ G R GL +++ YGM
Sbjct: 257 YALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM 316
Query: 108 TELTILVTFSDLDVP 122
E T+ V+FS
Sbjct: 317 AEATLAVSFSPCGAG 331
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 51.3 bits (123), Expect = 8e-08
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 7 FHG--YGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK---- 60
FHG YG L + M ++ ++IEK++VT +P + +L K
Sbjct: 310 FHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE 369
Query: 61 -SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE--LTILVTFS 117
+ + +YDLS+L I CG + +S + + +L + +GYG TE +T L +
Sbjct: 370 ATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKI---KSSRGYGQTEIGITYLYCYG 426
Query: 118 DLDVPSSSVGKVMPSMKMKVLVKSHTMGSQDSFVISGDEI 157
+++P ++ G +K +L S+D ++ +EI
Sbjct: 427 HINIPYNATGVPSIFIKPSIL-------SEDGKELNVNEI 459
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 50.8 bits (122), Expect = 1e-07
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP 62
P HG G+ + Q + V+LP FD + +E++RVT L VP ++ L + P
Sbjct: 214 PLSHGAGIHQLCQ-VARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHP 272
Query: 63 LVDQYDLSSLTNIRCGAAPVGKSTLDQVG--ERLGLSMDSMKQGYGMTELTILVTF---- 116
VD+YD SSL + AP+ ++ DQ +LG + Q +G+ E+T +T
Sbjct: 273 AVDRYDHSSLRYVIYAGAPMYRA--DQKRALAKLG---KVLVQYFGLGEVTGNITVLPPA 327
Query: 117 --SDLDVPSSSVG 127
D P + +G
Sbjct: 328 LHDAEDGPDARIG 340
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 49.9 bits (120), Expect = 2e-07
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 4 VPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
+P FH GL ++++++ LV+ FD ++E + VT + VP + L
Sbjct: 125 LPLFHVSGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQR-----L 179
Query: 64 VDQYDLSSLTNIRC---GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVT---FS 117
++ L+++R G AP+ S L+Q + G+ + YGMTE V
Sbjct: 180 LESLGARWLSSLRAVLLGGAPIPPSLLEQ-ARQRGI---PLYPTYGMTETASQVATLKPD 235
Query: 118 DLDVPSSSVGKVMPSMKMKV 137
D SVGK +P ++++
Sbjct: 236 DFLAKLGSVGKPLPGRELRI 255
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 49.2 bits (118), Expect = 4e-07
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 29 PHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLD 88
P + ++EKY+VT+ P + L K L + YDLSSL + P+ +
Sbjct: 249 PFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFE 308
Query: 89 QVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMKVL 138
LG+ + YG TE T + + V + S G +P ++ +
Sbjct: 309 WFYSALGV---WILDIYGQTE-TGMGFIAGRPPVKNGSSGLPLPGYAVRRV 355
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 48.7 bits (117), Expect = 6e-07
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAV-----PP 53
P HG G A+ +V+LP FD +IE+ +V ++ V P
Sbjct: 223 FPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARP 282
Query: 54 LVVFLAKSPLVDQYDLSSLTNIRCGAAP 81
L+ L YDLSSL I G A
Sbjct: 283 LLDALEAR---GPYDLSSLFAIASGGAL 307
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 47.9 bits (114), Expect = 1e-06
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ L+P FH G+ L + ++V F+ LS IEK++VT++ VP + L
Sbjct: 194 IVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALI 253
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELT---ILVTF 116
+ +L S+ G AP + + + +R G QG+GMTE + +++
Sbjct: 254 NCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFG---QGFGMTETSPTVFMLSE 309
Query: 117 SDLDVPSSSVGKVMPSMKMKVL 138
D S+GK + +++
Sbjct: 310 EDARRKVGSIGKPVLFCDYELI 331
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 47.1 bits (113), Expect = 2e-06
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 37 LSSIEKYRVTLLPAVPPL--------VVFLAKSPLVDQ--YDLSS-LTNIR---CGAAPV 82
L + + R T+ AVP + +A + + + + + +R G AP+
Sbjct: 168 LEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPL 227
Query: 83 GKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMK----- 136
L+ LG+ + +GYG+TE + + T + D+ +VGK +P ++++
Sbjct: 228 PPEVLEFF-RALGIPI---LEGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAEDG 283
Query: 137 -VLVKS 141
+LV+
Sbjct: 284 EILVRG 289
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 47.2 bits (112), Expect = 2e-06
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVF 57
+A++P +HG+GL+ L A + V+LP F H F I+ T AVP +
Sbjct: 221 VAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQI 280
Query: 58 LAKSPLVDQYDL--SSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVT 115
L + + ++L IR +AP+ T + + +GMTE T VT
Sbjct: 281 LLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAA---PVVCAFGMTEATHQVT 337
Query: 116 FSDLDV------PSSSVGKVMPS 132
+ ++ P S G V S
Sbjct: 338 TTQIEGIGQTENPVVSTGLVGRS 360
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 46.9 bits (112), Expect = 2e-06
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 4 VPFFH--GYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKS 61
+P FH G+ + A+ + V L D IEK++VT L P ++ LA +
Sbjct: 215 LPMFHCNGWCFPWAITAVGGTH--VCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANA 272
Query: 62 PLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD 120
P D+ L + AP + + ++ E LG + YG+TE +T +
Sbjct: 273 PEADKLPLPRPVRVMTAGAPPPPAVIKKM-EELGF---EVTHVYGLTETYGPITVCEWK 327
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 46.5 bits (111), Expect = 3e-06
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 26 VVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKS 85
V+L D L L +IE R+T A P + + L + P D DLSSL GA+ +
Sbjct: 242 VILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVE 301
Query: 86 TLDQVGERL-GLSMDSMKQGYGMTELTILVT 115
L ++ ERL GL YG TE+ L T
Sbjct: 302 VLKELRERLPGL---RFYNCYGQTEIAPLAT 329
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 45.1 bits (107), Expect = 9e-06
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP-- 62
P +H ++ I + ++V+ HFD +L+ IE+Y VT VP + + K P
Sbjct: 208 PLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEE 267
Query: 63 LVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD---- 118
+ D+YDLSSL AAP +Q+ + G + Y TE + T D
Sbjct: 268 VRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEY---YAATE-GLGFTACDSEEW 323
Query: 119 LDVPSSSVGKVM 130
L P +VG+ M
Sbjct: 324 LAHP-GTVGRAM 334
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 44.2 bits (105), Expect = 2e-05
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+A VP FH GL ++++++ ++V++ FD ++ VT++ V ++ L +
Sbjct: 186 LAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLE 245
Query: 61 SPLVDQYDLSSLTNIRC---GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
Y ++ RC G P K L+Q E+ G+ + Q YGMTE
Sbjct: 246 RLGEGTYP----SSFRCMLLGGGPAPKPLLEQCKEK-GI---PVYQSYGMTE 289
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 43.4 bits (103), Expect = 3e-05
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 5 PFFHGYGLLLMLQAI-CMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
P H +GL L + LP FD + R+T+ VP + L
Sbjct: 137 PLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYT-----RL 191
Query: 64 VDQYDLSSLT-----NIR---CGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
++ Y+ N+R G+A + L++ ER G ++ + YGMTE
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGH---TLLERYGMTE 242
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 43.6 bits (103), Expect = 3e-05
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 28 LPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTL 87
LP FD + L ++ KY +T + P + L + L Y SL + G P+ L
Sbjct: 250 LPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLT-SYKFKSLRHCVTGGEPLNPEVL 308
Query: 88 DQVGERLGLSMDSMKQGYGMTELT-ILVTFSDLDVPSSSVGKVMPSMKMKVL 138
+Q + GL + +GYG TE I F + + S+GK P ++++
Sbjct: 309 EQWKAQTGL---DLYEGYGQTETGLICANFKGMKIKPGSMGKASPPYDVQII 357
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 42.7 bits (101), Expect = 7e-05
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 25 LVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGK 84
LV+L +D F++++E+YRVT + V L P +YDLSSL +R + V K
Sbjct: 280 LVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRV-VSFVKK 338
Query: 85 STLDQVGERLGLSMDSMKQG-YGMTE 109
D L+ + + +GMTE
Sbjct: 339 LNPDYRQRWRALTGSVLAEAAWGMTE 364
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 42.3 bits (100), Expect = 7e-05
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 15/119 (12%)
Query: 34 HLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLT-NIR---CGAAPVGKSTLDQ 89
L K L PL L LV + +L IR G AP+ L
Sbjct: 313 RWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHF 372
Query: 90 VGERLGLSMDSMKQGYGMTELTILVTFSDLD-VPSSSVGKVMPSMKMK------VLVKS 141
LG+ + +GYG+TE + +V+ + D +VGK +P +++K +LV+
Sbjct: 373 F-RSLGIPI---LEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADDGEILVRG 427
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 42.0 bits (99), Expect = 9e-05
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 29 PHFDGHLFLSSIEKYRVTLLPAVPPLV--VFLAKSPLVDQYDLSSL-TNIR--CGAA-PV 82
P FD +L ++EK+ VT A PP V +F+ Q DL+ +R A P+
Sbjct: 160 PRFDARRYLGALEKFGVTTFCA-PPTVWRMFI-------QQDLAQYDVRLREAVSAGEPL 211
Query: 83 GKSTLDQVGERLGLSMDSMKQGYGMTELTILV-TFSDLDVPSSSVGKVMPSMKMKVL 138
+++V + GL +++ GYG TE T ++ V S+G+ +P ++ +L
Sbjct: 212 NPEVIERVKKAWGL---TIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPGYRVVLL 265
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 41.7 bits (99), Expect = 1e-04
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIR---C 77
LV+ P D + ++R+T+L VP L+ L+D + ++L ++R
Sbjct: 161 TLVLAPPEVLRDPEALAELLREHRITVLHLVPSLL-----RALLDALEPAALPSLRLVIV 215
Query: 78 GAAPVGKSTLDQVGERL-GLSMDSMKQGYGMTELTILVTFSDLDVPSS-----SVGKVMP 131
G + + + E G + + YG TE T+ VT+ ++D +G+ +
Sbjct: 216 GGEALPAELVRRWRELFPGARLVNA---YGPTETTVDVTYHEVDPDDLDGGSVPIGRPIA 272
Query: 132 SMKMKVL 138
+ ++ VL
Sbjct: 273 NTRVYVL 279
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 41.5 bits (98), Expect = 2e-04
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 53 PLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTI 112
P++ L K ++ L GAAP+ + + +LGL + +GYGMTE
Sbjct: 258 PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWY-RKLGLPI---CEGYGMTENFA 313
Query: 113 LVTFSDL-DVPSSSVGKVMPSMKMK------VLVKS 141
T + D +VGK +P +++K +L++S
Sbjct: 314 YSTLNYPGDRRIGTVGKPIPGVELKISEDGEILIRS 349
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 41.3 bits (97), Expect = 2e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMD 99
IE++ VT+ VPPL ++ ++ DLSSL ++ G A + + +V LG
Sbjct: 275 IERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGC--- 331
Query: 100 SMKQGYGMTELTILVTFSDLDVPSSSV 126
++Q +GM E LV ++ LD P +
Sbjct: 332 QLQQVFGMAEG--LVNYTRLDDPPEII 356
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 41.1 bits (97), Expect = 2e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 35 LFLSSIEKYRVTLLPAVPP------LVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLD 88
L+L ++R T+L P L+ ++D +DLSS+ I GA P+ +
Sbjct: 190 LWLDKASQHRATIL--SSPNFGYKYLLKHFKTEKIID-WDLSSVRLIFNGAEPISADLCE 246
Query: 89 QVGERL---GLSMDSMKQGYGMTELTILVTF 116
+ E++ GL ++M YG+ E T+ V+F
Sbjct: 247 EFLEKMAPFGLRPNAMYPVYGLAEATLAVSF 277
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 40.9 bits (96), Expect = 2e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMD 99
IE+++VT+ VPP V ++ + DLSSL ++ G A + +V G
Sbjct: 268 IERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGAKFSAAAARRVPAVFGC--- 324
Query: 100 SMKQGYGMTELTILVTFSDLDVP 122
++Q +GM E LV ++ LD P
Sbjct: 325 QLQQVFGMAEG--LVNYTRLDDP 345
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 41.0 bits (96), Expect = 3e-04
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 1 MALVPFFHGYG-----LLLMLQAICMNNKLVVLPH--FDGHLFLSSIEKYRVTLLPAVPP 53
M+ +P FH YG L +L + VV + + I++ +VT L + P
Sbjct: 228 MSFLPPFHAYGFNSCTLFPLLSGVP-----VVFAYNPLYPKKIVEMIDEAKVTFLGSTPV 282
Query: 54 LVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTIL 113
++ K+ + L SL + G K +L Q + + ++QGYG TE + +
Sbjct: 283 FFDYILKTAKKQESCLPSLRFVVIGG-DAFKDSLYQEALKTFPHI-QLRQGYGTTECSPV 340
Query: 114 VTFSDLDVP--SSSVGKVMPSMKMKVLVKS 141
+T + ++ P S VG MP M VL+ S
Sbjct: 341 ITINTVNSPKHESCVG--MPIRGMDVLIVS 368
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 40.3 bits (95), Expect = 3e-04
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAV-----PP 53
+ P HG G L L A+ +V+LP FD ++EK+RV L V P
Sbjct: 62 LPACPLMHGAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARP 121
Query: 54 LVVFLAKSPLVDQYDLSSLTNIRCGAAP 81
L+ L + +YDLSSL I A
Sbjct: 122 LLEALEAA---GRYDLSSLRAISSSGAM 146
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 40.1 bits (94), Expect = 5e-04
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 4 VPFFHGYGLLLMLQAICMNNKLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKS 61
VP FH G+ ML + + V+ P FD L +E +VT + VP +
Sbjct: 223 VPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAE 282
Query: 62 PLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTEL---TILVTFSD 118
DL+ L + GAAP + L Q+ + + +G TE+ T ++ D
Sbjct: 283 QQARPRDLA-LRVLSWGAAPASDTLLRQMAATFPEAQ--ILAAFGQTEMSPVTCMLLGED 339
Query: 119 LDVPSSSVGKVMPSMKMKVL 138
SVGKV+P++ +V+
Sbjct: 340 AIRKLGSVGKVIPTVAARVV 359
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 39.2 bits (91), Expect = 9e-04
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK--SP 62
P +H L + +V+ FD L +E+YR+T+ VP + V L K +
Sbjct: 203 PIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDAD 262
Query: 63 LVDQYDLSSLTNIRCGAAP----VGKSTLDQVGERLGLSMDSMKQGYGMT 108
+ +YD+SSL + AAP V + +D +G + S + +GMT
Sbjct: 263 VRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIV-YEYYSSTEAHGMT 311
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 39.1 bits (91), Expect = 9e-04
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 5 PFFH--GYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP 62
P H G+ LM+ + +N V+ ++ I + VT A P + L ++
Sbjct: 244 PMAHQTGFMYGLMM-PLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAV 302
Query: 63 LVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE---LTILVTFSDL 119
+ SL C AP+ +++ E LG + S +GMTE +T+ L
Sbjct: 303 KESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVS---AWGMTENGAVTVTEPDDAL 359
Query: 120 DVPSSSVGKVMPSMKMKVL 138
+ S++ G+ +P +++KV+
Sbjct: 360 EKASTTDGRPLPGVEVKVI 378
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 39.4 bits (92), Expect = 0.001
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 1 MALV-PFFHGYGLLLMLQAICMNNKLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVV 56
M +V F G+ + A+ L +LP D F + + VT+L VP +
Sbjct: 700 MLMVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQ 759
Query: 57 FLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGE-RLGLSMDSMKQGYGMTELTILVT 115
L ++ V + CG + L +V G + + YG TE T+ V+
Sbjct: 760 ALLQASRVAL--PRPQRALVCGGEALQVDLLARVRALGPGARLINH---YGPTETTVGVS 814
Query: 116 FSDL-----DVPSSSVGKVMPSMKMKVL 138
+L D + +G+ + ++ + +L
Sbjct: 815 TYELSDEERDFGNVPIGQPLANLGLYIL 842
Score = 38.2 bits (89), Expect = 0.002
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 18 AICMNNKLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTN 74
+ +LV+ P H D + IE+ +VT L VP ++ L + ++ LS L
Sbjct: 1780 PLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLS-LRR 1838
Query: 75 IRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDV------PSSSVGK 128
+ CG + L ERL + + YG TE + VT S +G+
Sbjct: 1839 VVCGGEALEVEALRPWLERLPDT--GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQ 1896
Query: 129 VMPSMKMKVL 138
+ ++ +L
Sbjct: 1897 PIANLSTYIL 1906
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 38.6 bits (90), Expect = 0.001
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 22/142 (15%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV 64
P +H GL ++ + + L ++ F+ L I RVT + VP + L
Sbjct: 160 PLYHISGLSILFRWLIEGATLRIVDKFNQ--LLEMIANERVTHISLVPTQLNRLLDE--- 214
Query: 65 DQYDLSSLTNIRC-----GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTEL-TILVTFSD 118
N+R A P L + ++ GL + YGMTE + + T +
Sbjct: 215 ----GGHNENLRKILLGGSAIPA---PLIEEAQQYGLPI---YLSYGMTETCSQVTTATP 264
Query: 119 LDVPS-SSVGKVMPSMKMKVLV 139
+ + VG+ + ++K+ V
Sbjct: 265 EMLHARPDVGRPLAGREIKIKV 286
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 38.8 bits (91), Expect = 0.001
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 40 IEKYRVTLLPAVPPLV-VFLAKSPLVD-QYDLSSLTNIRCGAAPVGKSTLDQVGERLGLS 97
IEK++V + VPP V ++L + L+SL ++ G A + ++ ++ LG
Sbjct: 268 IEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGC- 326
Query: 98 MDSMKQGYGMTELTILVTFSDLD 120
++Q +GM E LV ++ LD
Sbjct: 327 --QLQQVFGMAEG--LVNYTRLD 345
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 38.2 bits (89), Expect = 0.002
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA- 59
+A++P YG + A + +V+ + L ++EK+ +T L AVPPL LA
Sbjct: 208 LAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQ 267
Query: 60 -KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLS----MDSMKQGYGMTELTILV 114
P L LTN GA P ++TL ++ L + M YG+TE
Sbjct: 268 LDWPESAAPSLRYLTN-SGGAMP--RATLSRLRSFLPNARLFLM------YGLTE-AFRS 317
Query: 115 TFSD---LDVPSSSVGKVMPSMKMKVL 138
T+ +D S+GK +P+ ++ VL
Sbjct: 318 TYLPPEEVDRRPDSIGKAIPNAEVLVL 344
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 38.4 bits (89), Expect = 0.002
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV--DQYDLSSLTNIRCG 78
+LV+ P D L +E +T+L VP L+ L + L L + G
Sbjct: 434 RLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSG 493
Query: 79 AAPVGKSTLDQVGERLGLSMDSMK--QGYGMTELTILVTFSDLDV---PSSSVGKVMPSM 133
+ L V L L+ + + YG TE T+ + +G+ + +
Sbjct: 494 GEAL---PLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANT 550
Query: 134 KMKVL 138
++ +L
Sbjct: 551 QLYIL 555
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 38.1 bits (88), Expect = 0.002
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 4 VPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
+P FHG GL +++ I + ++ HFD L+ +R AVP ++ + + P
Sbjct: 224 MPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP- 282
Query: 64 VDQYDLSS-LTNIRCGAAPVGKSTLDQVGERLGLSM-----DSMKQGYGMTELTI--LVT 115
+ + L +R V S+ D++ LG D + GYG TE+ I L T
Sbjct: 283 -PRVRARNPLPQLR-----VVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALAT 336
Query: 116 FSDLDVPSSSVGKVMPSMKMKVL 138
+DL +VGK + +++L
Sbjct: 337 PADLRDAPETVGKPVAGCPVRIL 359
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 37.9 bits (88), Expect = 0.003
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 1 MALVPFFHGYGLL-LMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ L+P +H G +++ A+ ++ VV+ FD L IE+ RVT L A P + LA
Sbjct: 199 LGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALA 258
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL 119
+ L SL ++ A + + L++V + L ++ YG TE + L
Sbjct: 259 AAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNI---YGTTE-----AMNSL 310
Query: 120 DVPSSSVGKVM-PSMKMKVLVKSHTMGSQDSFVISGDE 156
+ G M P +V + GS D + +G+E
Sbjct: 311 YMRDPRTGTEMRPGFFSEVRIVR-IGGSPDEALPNGEE 347
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 37.7 bits (88), Expect = 0.003
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 35 LFLSSIEKYRVTLLPAVPP-----LVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQ 89
+L I++YRVT+ A P L+ + +DLSSL I V T+ +
Sbjct: 251 RWLDLIDRYRVTITWA--PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRR 308
Query: 90 VGERL---GLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKV 129
E L GL D+++ +GM+E VT+S G V
Sbjct: 309 FLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGV 351
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 37.2 bits (87), Expect = 0.004
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 10 YGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP--LVDQY 67
Y LL A M L P D ++ +EKY+V + + P + L K L+ ++
Sbjct: 295 YAPLLAGMATIMYEGLPTRP--DAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKH 352
Query: 68 DLSSLTNIRCGAAPVGKSTLDQVGERLGLS-MDSMKQGYGMTE-----LTILVTFSDLDV 121
DLSSL + P+ + T + E LG+ +D+ Y TE L I D
Sbjct: 353 DLSSLRALFLAGEPLDEPTASWISEALGVPVIDN----YWQTETGWPILAIARGVEDRPT 408
Query: 122 PSSSVGKVMPSMKMKVL 138
S G M +K+L
Sbjct: 409 RLGSPGVPMYGYNVKLL 425
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 37.1 bits (86), Expect = 0.004
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 31/145 (21%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+ L P G +L+ QA L L +I+++R T+L P + A
Sbjct: 207 LVLFPLRFGASAVLLEQA-------------TPPLLLKAIQEHRATILFTAP--TAYRAM 251
Query: 61 SPLVDQYDLSSLTNIRCGAA------PVGKSTLDQVGERLGLSMDSMKQGYGMTE-LTIL 113
V +D+SSL +C +A V + ++ G ++ G G TE L I
Sbjct: 252 LIKVKAFDISSL--RKCVSAGETLPAKVWQDWYERTGLKI-------IDGIGATEMLHIF 302
Query: 114 VTFSDLDVPSSSVGKVMPSMKMKVL 138
++ ++ + + GK +P + +++
Sbjct: 303 ISANEENAKPGATGKPVPGYEARIV 327
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 37.2 bits (86), Expect = 0.004
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 4 VPFFHGY-----GLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFL 58
+P +H + GL+ M C N L+ P D F+ ++K R T V L L
Sbjct: 261 LPLYHIFALTANGLVFMKIGGC--NHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGL 317
Query: 59 AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD 118
+P DQ D SSL G V +S ++ + GL ++ + YG+TE + +
Sbjct: 318 LNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGL---TLVEAYGLTETSPAACINP 374
Query: 119 LDVP--SSSVGKVMPS 132
L + + S+G +PS
Sbjct: 375 LTLKEYNGSIGLPIPS 390
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 37.2 bits (86), Expect = 0.004
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMD 99
I ++RVT+L P + LA+ D + SL G V +++ D L
Sbjct: 4780 IHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYCFGGEAVAQASYDLAWRAL--KPV 4836
Query: 100 SMKQGYGMTELTILVTF---SDLDVPSSS---VGKVMPSMKMKVL 138
+ GYG TE T+ V D D ++ +G + + VL
Sbjct: 4837 YLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVL 4881
Score = 36.1 bits (83), Expect = 0.011
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80
+LVV H D + I + V L VP ++ + V +SL I C
Sbjct: 723 RLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVAS--CTSLRRIVCSGE 780
Query: 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS 117
+ +QV + L + YG TE I VT
Sbjct: 781 ALPADAQEQVFAK--LPQAGLYNLYGPTEAAIDVTHW 815
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 36.9 bits (85), Expect = 0.005
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 4 VPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
+P FH G V + H +IE + VT + VP + L K
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 64 VDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD 118
+D S ++ G +P + + +V +RLG + YG+TE T V F +
Sbjct: 294 LDLSPRSGPVHVLTGGSPPPAALVKKV-QRLGF---QVMHAYGLTEATGPVLFCE 344
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 37.0 bits (86), Expect = 0.005
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 36 FLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL- 94
F+ ++KY T + V L L + + D SSL G V ++ V ER
Sbjct: 291 FVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQA----VAERWV 346
Query: 95 GLSMDSMKQGYGMTELTILVTFS--DLDVPSSSVGKVMPSMKMKV 137
L+ + +GYG+TE + LV+ + DLD S S+G +PS ++K+
Sbjct: 347 KLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKL 391
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 35.8 bits (83), Expect = 0.012
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 36 FLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGER-L 94
F+ ++KY+V + PAV L L +P D+ D S L G V + V ER L
Sbjct: 293 FIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRP----VAERWL 348
Query: 95 GLSMDSMKQGYGMTELTILVTFSDLDVP--SSSVGKVMPS 132
++ + +GYG++E + + T + +D S ++G +PS
Sbjct: 349 EMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPS 388
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 35.3 bits (82), Expect = 0.014
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 25 LVVLP----HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80
LVV P D L + I ++ VT+L P L+ LA L+SL + G
Sbjct: 189 LVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA---AALPPALASLRLVILGGE 245
Query: 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKVMP 131
+ + +D+ R + + YG TE T+ T + +D + +P
Sbjct: 246 ALTPALVDRWRARGPGA--RLINLYGPTETTVWSTATLVDPDDAPRESPVP 294
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 35.7 bits (83), Expect = 0.015
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 5 PFFHGYG--------LLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVV 56
PFFH +G LL ++ + + D + K+R T+L P +
Sbjct: 831 PFFHSFGLTVTLWLPLLEGIKVVYHPDPT------DALGIAKLVAKHRATILLGTPTFLR 884
Query: 57 FLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVT 115
++ + +SL + GA + D E+ G+ + +GYG TE + + +
Sbjct: 885 LYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRI---LEGYGATETSPVAS 940
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 35.4 bits (82), Expect = 0.017
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 32 DGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP----LVDQYDLSSLTNIRCGAAPVGKSTL 87
D + IE+Y V L P + + K + +YDLSSL + + TL
Sbjct: 303 DAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTL 362
Query: 88 DQVGERLGLS-MDSMKQ---GYGMTELTILVTFSDLDVPSSSVGKVMPSMKMKVL 138
+ + + LG+ +D Q G+ +T V L + S GK +P ++VL
Sbjct: 363 EWIEKTLGVPVIDHWWQTETGWPIT--ANCVGLELLPIKPGSPGKPVPGYDVQVL 415
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 34.5 bits (79), Expect = 0.029
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 10 YGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP--LVDQY 67
Y LL A + L P D ++ S +E+Y V + + P + L K + ++
Sbjct: 294 YAPLLAGAATVLYEGLPTNP--DPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKH 351
Query: 68 DLSSLTNIRCGAAPVGKSTLDQVGERLG 95
DLSSL + P+ + T + + LG
Sbjct: 352 DLSSLHWLFLAGEPLDEPTAHWITDGLG 379
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 34.4 bits (80), Expect = 0.037
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 78 GAAPVGKSTLDQVGERLGLSMDS-MKQGYGMTELTILVTFSDLDVPSS-SVGKVMPSMKM 135
G AP+ T E L +++ + QGYG+TE T SD ++ VG +P ++
Sbjct: 277 GGAPLSPDTQ----EFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPLPCCEI 332
Query: 136 K 136
K
Sbjct: 333 K 333
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 33.8 bits (78), Expect = 0.053
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 77 CGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILV----TFSDLDVPSSSVGKVMPS 132
G P+ +T + V G+ + QG+G+TE T+ DL+ ++VG+++
Sbjct: 435 SGGGPLSAATQEFVNVVFGM----VIQGWGLTE-TVCCGGIQRTGDLE--PNAVGQLLKG 487
Query: 133 MKMKVL 138
++MK+L
Sbjct: 488 VEMKLL 493
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 33.9 bits (78), Expect = 0.057
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 36/155 (23%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLV----- 55
M+ +P FH +GL + L + V L S YR+ VP LV
Sbjct: 410 MSALPLFHSFGLTVGLFTPLLTGAEVFL--------YPSPLHYRI-----VPELVYDRNC 456
Query: 56 -VFLAKSPLVDQ-------YDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGM 107
V S + YD + L + GA + +ST ++ GL + +GYG+
Sbjct: 457 TVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGL---RILEGYGV 513
Query: 108 TELTILVTFSDLDVPSS----SVGKVMPSMKMKVL 138
TE +V+ ++VP + +VG+++P M ++L
Sbjct: 514 TECAPVVS---INVPMAAKPGTVGRILPGMDARLL 545
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 33.6 bits (77), Expect = 0.070
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 6 FFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVD 65
F HG ++ A + V+L F L+ +E+ R T + P + L
Sbjct: 243 FLHGVTAPFLIGA-----RSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ 297
Query: 66 QYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTE 109
DLS+L CG + K + +R G+ + S+ YG TE
Sbjct: 298 PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSV---YGSTE 337
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 33.1 bits (76), Expect = 0.087
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 17/130 (13%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVV--LPHFD----GHLFLSSIEKYRVTLLPAVPP----- 53
PF+H GL+ L + +L V LP D +L I + R T+ + P
Sbjct: 226 PFYHDMGLVGFLLTP-VATQLSVDYLPTRDFARRPLQWLDLISRNRGTI--SYSPPFGYE 282
Query: 54 LVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGER---LGLSMDSMKQGYGMTEL 110
L S + + DLS GA + L Q E G + YG+ E
Sbjct: 283 LCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEA 342
Query: 111 TILVTFSDLD 120
T+ V+FS L
Sbjct: 343 TLAVSFSPLG 352
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 32.8 bits (75), Expect = 0.10
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP-- 62
P FH +G ++ A + +V FD L I+++R T L VP + + P
Sbjct: 245 PMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE 304
Query: 63 LVDQYDLSSLTNIRCGAAP----VGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS- 117
+ ++Y SL + V + +DQ G D + Y TE ++ T +
Sbjct: 305 VRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-------DVIYNNYNATEAGMIATATP 357
Query: 118 -DLDVPSSSVGKVMPSMKMKVL 138
DL + G+ ++++L
Sbjct: 358 ADLRAAPDTAGRPAEGTEIRIL 379
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 32.9 bits (75), Expect = 0.10
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 1 MALVPFFHGYGLLLMLQAICM-----NNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLV 55
+A +P +H Y +CM +N L+ P D F+ + K+R + L + L
Sbjct: 262 IAPLPLYHIYAF--TANCMCMMVSGNHNVLITNPR-DIPGFIKELGKWRFSALLGLNTLF 318
Query: 56 VFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVT 115
V L P D S+L G + K+T ++ + G ++ +GYG+TE + + +
Sbjct: 319 VALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLTGC---TIVEGYGLTETSPVAS 375
Query: 116 FSDLDVPS--SSVGKVMPSMKMKVL 138
+ + +VG +P +KV+
Sbjct: 376 TNPYGELARLGTVGIPVPGTALKVI 400
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 32.4 bits (74), Expect = 0.18
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 30 HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQ 89
H D +++Y VT L VPPL+ PL +SL + G + ++
Sbjct: 1350 HRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAAA--CTSLRRLFSGGEALPAELRNR 1407
Query: 90 VGERLGLSMDSMKQGYGMTELTILVT 115
V +R L + YG TE I VT
Sbjct: 1408 VLQR--LPQVQLHNRYGPTETAINVT 1431
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 32.2 bits (73), Expect = 0.19
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 25 LVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGK 84
L + FD L++IE++R+T P ++ + P D++DL SL G +
Sbjct: 219 LRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPE 278
Query: 85 STLDQVGE--RLGLSMDSMKQGYGMTE 109
S + +D YG+TE
Sbjct: 279 SRIRDFTRVFTRARYID----AYGLTE 301
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 32.0 bits (73), Expect = 0.19
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLV 64
P FH L QA+ V+ P F F ++ ++ T+ + +V L P
Sbjct: 229 PLFHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR 288
Query: 65 DQYDLSSLTNIRCGAAP-VGKSTLDQVGERLGLSMDSMKQGYGMTE 109
+ +R P V + ER G+ + GYG TE
Sbjct: 289 ES---DRAHRVRVALGPGVPAALHAAFRERFGVDLLD---GYGSTE 328
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 31.8 bits (73), Expect = 0.23
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 39/137 (28%)
Query: 25 LVVLPHFDGHLFLS---SIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTN-IRCG-- 78
L V+P L+ ++++ +T+ +VP L S ++ L SL + CG
Sbjct: 166 LYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASLLLLSRELNPESLPSLRTFLFCGEV 225
Query: 79 -----------AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSS-- 125
P + + YG TE T+ VT ++ S
Sbjct: 226 LPKKLAKALRRRFP--NARIIN--------------LYGPTEATVAVTAYEVTPEPLSRN 269
Query: 126 ----VGKVMPSMKMKVL 138
+G P ++ +L
Sbjct: 270 EPLPIGYPKPGLRALIL 286
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 31.7 bits (72), Expect = 0.28
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 26 VVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKS 85
V+LP FD L +I+++ VT + VP + + D L+ + V +
Sbjct: 242 VLLPKFDAKAALQAIKQHNVTSMITVPAM--------MADLISLTRKSMTWKVFPSV-RK 292
Query: 86 TLDQVGERLGLSMDSMKQ---------GYGMTELTILVTFSDLDVPSSSVGKV 129
L+ G + K+ YGMTE +TF L P+ K
Sbjct: 293 ILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQ 345
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 31.2 bits (71), Expect = 0.34
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 QGYGMTELTILVTFSDLDVPSSSVGKVMP 131
QGYG+TE TFS+ D SVG+V P
Sbjct: 450 QGYGLTETCAGATFSEWDDT--SVGRVGP 476
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 30.3 bits (69), Expect = 0.89
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 67 YDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVP---- 122
YD SL + GA V + T E+ G+ + +GYG+TE ++ + P
Sbjct: 904 YDFRSLRYVFAGAEKVKEETRQTWMEKFGI---RILEGYGVTETAPVIALN---TPMHNK 957
Query: 123 SSSVGKVMPSMKMKV 137
+ +VG+++P ++ ++
Sbjct: 958 AGTVGRLLPGIEYRL 972
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 30.0 bits (68), Expect = 0.97
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMD 99
IE+Y+ T+ VP L + +P + DLSSL + + E GL
Sbjct: 248 IERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGL--- 304
Query: 100 SMKQGYGMTE-LTILVTFSDLDVPSSSVGKVMPSMKMKV 137
+ G G TE L I ++ V + GK +P ++K+
Sbjct: 305 EILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKL 343
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 30.1 bits (68), Expect = 1.00
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 68 DLSSLTNIRCGAAPVGKSTLDQVGERL---GLSMDSMKQGYGMTELTILVT 115
DLS++ + G+ PV +++ + E GL ++K YGM E T+ V+
Sbjct: 304 DLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVS 354
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 29.7 bits (67), Expect = 1.1
Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 7/141 (4%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVL-PHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ +VP FH L A KLV+ P DG IE RVT VP + + L
Sbjct: 223 LPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLL 282
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL 119
S+L G + + + + G+ + +GMTE++ L T L
Sbjct: 283 NHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEV---IHAWGMTEMSPLGTLCKL 339
Query: 120 DVPSSSVGKVMPSMKMKVLVK 140
S + + K+L K
Sbjct: 340 KWKHSQLP---LDEQRKLLEK 357
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 29.5 bits (67), Expect = 1.1
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 5 PFFHGYGLLLMLQAICMNNKLVVL-PHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
P +H L + + + L F F + +Y T V L +L P
Sbjct: 130 PLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPE 189
Query: 64 VDQYDLSSLTNIRC----GAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL 119
D +R G P D+ ER G+ + + YG TE + F +L
Sbjct: 190 KP-DDRD--HPLRKIIGNGLRP---DIWDEFKERFGV--PRIVEFYGSTEGNV--GFINL 239
Query: 120 DVPSSSVGKVMPSMKMKVL 138
+VG++ P + V+
Sbjct: 240 FNKPGAVGRL-PPAAIAVV 257
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 29.5 bits (67), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 36 FLSSIEKYRVTLLPAVPPLVVFLAKSP--LVDQYDLSSL 72
F IEK++VT+ P + L + V ++DLSSL
Sbjct: 322 FWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSL 360
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSPLV--DQYDLSSLTNIRCGAAPVGKSTLDQV 90
K +T+ + L K+ + +DLSSL I +P+ D V
Sbjct: 324 AAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWV 376
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 28.8 bits (65), Expect = 2.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 67 YDLSSLTNIRCGAAPVGKSTLDQVGERL---GLSMDSMKQGYGMTELTILVTFSDLDVPS 123
DL + I G+ V +TL + +R L +++ YG+ E T+ V + P
Sbjct: 285 LDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPP 344
Query: 124 SSV 126
SV
Sbjct: 345 ESV 347
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 28.6 bits (64), Expect = 2.8
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 31 FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL-VDQYDLSSLTNIRCGAAPVGKSTLDQ 89
F +E+ VT P L + L P+ +
Sbjct: 165 FTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRW 224
Query: 90 VGERLGLS-MDSMKQGYGMTELTILVTFSD---LDVPSSSVGKVMPSMKMKVL 138
LG++ D YG TE + V +V + S+G +P ++ VL
Sbjct: 225 FQANLGVTIHDH----YGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVL 273
>gnl|CDD|219932 pfam08610, Pex16, Peroxisomal membrane protein (Pex16). Pex16 is a
peripheral protein located at the matrix face of the
peroxisomal membrane.
Length = 337
Score = 28.1 bits (63), Expect = 3.0
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 35 LFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL 94
L L I K R L P +P + +Q D S+ + + V +R
Sbjct: 122 LLLLRITKSRPLLSPPIPQR-ERDPELLEREQNDQSNSDPEDGLNLNTSNQSPEFVLKRS 180
Query: 95 GLSM 98
G +
Sbjct: 181 GRVV 184
>gnl|CDD|100067 cd02638, R3H_unknown_1, R3H domain of a group of eukaryotic
proteins with unknown function. The name of the R3H
domain comes from the characteristic spacing of the
most conserved arginine and histidine residues. The
function of the domain is predicted to bind ssDNA or
ssRNA in a sequence-specific manner.
Length = 62
Score = 26.3 bits (58), Expect = 3.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 35 LFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLT 73
+FL S ++YRV L P + +L + +++ LS+ +
Sbjct: 10 IFLLSFQRYRVLLFPPLNSRRRYLIHQTVENRFLLSTFS 48
>gnl|CDD|225811 COG3272, COG3272, Uncharacterized conserved protein [Function
unknown].
Length = 163
Score = 27.4 bits (61), Expect = 3.7
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 11/39 (28%)
Query: 27 VLPHFDGHL-----------FLSSIEKYRVTLLPAVPPL 54
VL H G+ IE YR P + P+
Sbjct: 89 VLMHVQGYFSRHLNSEERQELAELIESYRRGEQPLLAPI 127
>gnl|CDD|181169 PRK07921, PRK07921, RNA polymerase sigma factor SigB; Reviewed.
Length = 324
Score = 27.4 bits (61), Expect = 5.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 86 TLDQVGERLGLSMDSMKQ 103
TLDQ+G+ GLS + ++Q
Sbjct: 284 TLDQIGKLFGLSRERVRQ 301
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 27.6 bits (62), Expect = 5.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSP--LVDQYDLSSL 72
+E+++VT L P L+ L V+ +DLSSL
Sbjct: 189 VERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSL 223
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 27.4 bits (61), Expect = 6.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 103 QGYGMTELT--ILVTFSDLDVPSSSVGKVMPSMKMKV 137
QGYG+TE T I V +D + S G + P+ K KV
Sbjct: 491 QGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKV 527
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 27.4 bits (62), Expect = 6.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSP--LVDQYDLSSL 72
I+K++VT+ P + L K +YDLSSL
Sbjct: 335 IDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSL 369
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 27.5 bits (62), Expect = 6.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSP--LVDQYDLSSL 72
+EKY+VT+ P + L + ++DLSSL
Sbjct: 315 VEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSL 349
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 27.4 bits (61), Expect = 7.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 103 QGYGMTELTILVTFSDL-DVPSSSVGKVMPSMKMK 136
+GYGMTE + +++ D D S VG P+ ++K
Sbjct: 406 EGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVK 440
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 26.9 bits (60), Expect = 9.7
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 5 PFFHGYGLLL-MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
P H YGL+ +L A+ +K V++ + + L+ + +L AVP ++ L +
Sbjct: 150 PVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLP 209
Query: 64 VDQ 66
Sbjct: 210 GTF 212
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,196,476
Number of extensions: 926138
Number of successful extensions: 968
Number of sequences better than 10.0: 1
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 126
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)