RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9665
(207 letters)
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 173 bits (440), Expect = 2e-51
Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+++VPF HG+G+ L + ++V++ F+ LFL S++ Y++ VP L F AK
Sbjct: 238 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 297
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL- 119
S L+D+YDLS+L I G AP+ K + V +R L ++QGYG+TE T + +
Sbjct: 298 STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP--GIRQGYGLTETTSAILITPEG 355
Query: 120 DVPSSSVGKVMPSMKMKV 137
D +VGKV+P + KV
Sbjct: 356 DDKPGAVGKVVPFFEAKV 373
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 173 bits (440), Expect = 2e-51
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+ +VPF HG+G+ L + ++V+L FD FL +++ Y+ T + VP L L K
Sbjct: 240 LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK 299
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL- 119
S L+++YDLS+L I G AP+ K + V R L ++QGYG+TE T + +
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP--GVRQGYGLTETTSAIIITPEG 357
Query: 120 DVPSSSVGKVMPSMKMKV 137
D + GKV+P K KV
Sbjct: 358 DDKPGASGKVVPLFKAKV 375
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 172 bits (439), Expect = 5e-50
Identities = 49/144 (34%), Positives = 84/144 (58%), Gaps = 9/144 (6%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ ++P FH Y L +ML + + ++++P F+ +L L I++ +VT+ P VPP+V+ +A
Sbjct: 274 LCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIA 333
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS-- 117
KS ++YDLSS+ ++ GAAP+GK D V + + + QGYGMTE ++ S
Sbjct: 334 KSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNA--KLGQGYGMTEAGPVLAMSLG 391
Query: 118 ----DLDVPSSSVGKVMPSMKMKV 137
V S + G V+ + +MK+
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKI 415
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 168 bits (427), Expect = 1e-49
Identities = 49/144 (34%), Positives = 83/144 (57%), Gaps = 9/144 (6%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ ++P FH Y L +ML + + ++++P F+ L IEKY+V++ P VPP+++ +A
Sbjct: 227 LCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS-- 117
KSP +D++DLSSL I+ G AP+GK D V + + + QGYGMTE ++
Sbjct: 287 KSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA--RLGQGYGMTEAGPVLAMCLA 344
Query: 118 ----DLDVPSSSVGKVMPSMKMKV 137
D+ + G V+ + +MK+
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKI 368
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 147 bits (374), Expect = 5e-42
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+ +P FH L+ + + N+ VV+ F+ + +IEKY+ T AVPP + L
Sbjct: 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVN 284
Query: 61 S--PLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDS----MKQGYGMTELTILV 114
+ YD S L GA PV + ++++ + ++ Q +GMTE +V
Sbjct: 285 TLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV 344
Query: 115 TFSDLDVP--SSSVGKVMPSMKMKVL 138
T + S++ G M +++KV+
Sbjct: 345 TTNPPLRLDKSTTQGVPMSDIELKVI 370
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 109 bits (276), Expect = 2e-28
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 7/140 (5%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+ +P FH L ++ + L+ +P FD S I + RV + AVP ++ F+ +
Sbjct: 215 LLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTF-SDL 119
P + D G AP+ ++ + + + QGY +TE T
Sbjct: 275 VPEFAELDAPDFRYFITGGAPMPEALIKIY-AAKNI---EVVQGYALTESCGGGTLLLSE 330
Query: 120 DVPS--SSVGKVMPSMKMKV 137
D S G+ + V
Sbjct: 331 DALRKAGSAGRATMFTDVAV 350
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 106 bits (266), Expect = 5e-27
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
+ ++P FH GL LML V+ FD IE ++VT++ P++ +
Sbjct: 205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILD 264
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD 120
L+SL + P T+++ + +G +E + L TF+
Sbjct: 265 QA--APAQLASLRAVTGLDTPE---TIERFEATCP--NATFWATFGQSETSGLSTFAPYR 317
Query: 121 VPSSSVGKVMPSMKMKVL 138
S G+ + + V+
Sbjct: 318 DRPKSAGRPLFWRTVAVV 335
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 105 bits (265), Expect = 7e-27
Identities = 28/140 (20%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 1 MALVPFFHGYGLLLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAK 60
++++P +H GL ++L+A+ + ++ F+ L+ I+ R+T + VP + +L +
Sbjct: 208 LSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ 267
Query: 61 SPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD-L 119
L + Y+L I G A + + ++ + L + +GMTE +
Sbjct: 268 QGLHEPYNLQK---ILLGGAKLSATMIETA-LQYNL---PIYNSFGMTETCSQFLTATPE 320
Query: 120 DVPS--SSVGKVMPSMKMKV 137
+ + +VG ++ +K+
Sbjct: 321 MLHARPDTVGMPSANVDVKI 340
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 105 bits (264), Expect = 1e-26
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ +P +H +GL + + ++ LP FD L + R T+L VP L
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLL 257
Query: 60 KSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDL 119
+SP + + + G+AP+ T + + G ++ + YGMTE T + T +
Sbjct: 258 QSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH---AVLERYGMTE-TNMNTSNPY 313
Query: 120 DVPS--SSVGKVMPSMKMKV 137
D +VG +P + +V
Sbjct: 314 DGDRVPGAVGPALPGVSARV 333
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 104 bits (263), Expect = 1e-26
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 8/140 (5%)
Query: 1 MALVPFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLA 59
+ L+P +H G +++ A+ ++ VV+ F L +++ +VT L A P + LA
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALA 259
Query: 60 KSPLV--DQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFS 117
+ L SL ++ A + + L+ V + L YG TE +
Sbjct: 260 AAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG---EKVNIYGTTEAMNSLYMR 316
Query: 118 DLDVPSSSVGKVMPSMKMKV 137
+ ++++
Sbjct: 317 QPKT--GTEMAPGFFSEVRI 334
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 102 bits (258), Expect = 8e-26
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 1 MALVPFFHGYGLLL--MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFL 58
+A +P H Y L +L + ++V+ P IE+ +VT+ VPPL +
Sbjct: 227 LAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVW 286
Query: 59 AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD 118
+ + DLSSL ++ G A +V G +++Q +GM E + T D
Sbjct: 287 MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC---TLQQVFGMAEGLVNYTRLD 343
Query: 119 --LDVPSSSVGKVM-PSMKMKV 137
++ ++ GK M P + +V
Sbjct: 344 DPEEIIVNTQGKPMSPYDESRV 365
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 101 bits (254), Expect = 3e-25
Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 1 MALVPFFHGYGLLL--MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFL 58
+ +P H + L L + +V+ P+ + S I++++V + VP V+
Sbjct: 236 LCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMW 295
Query: 59 AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSD 118
+ + + SL ++ G A +S QV E L ++Q +GM E + T D
Sbjct: 296 LEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC---KLQQVFGMAEGLVNYTRLD 352
Query: 119 LDVPS--SSVGKVMP 131
++ G+ +
Sbjct: 353 DSDEQIFTTQGRPIS 367
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 99.2 bits (248), Expect = 2e-24
Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 10/144 (6%)
Query: 1 MALVPFFHGYGL--LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFL 58
+ +P H Y + L +V+ L IEK++V + VPP V
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLW 288
Query: 59 --AKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTF 116
A + L+SL ++ G A + + ++ +G ++Q +GM E + T
Sbjct: 289 LQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC---QLQQVFGMAEGLVNYTR 345
Query: 117 SDLDVPS--SSVGK-VMPSMKMKV 137
D + G + P ++ V
Sbjct: 346 LDDSAEKIIHTQGYPMCPDDEVWV 369
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 89.6 bits (223), Expect = 3e-21
Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 6/137 (4%)
Query: 5 PFFHGYGLL-LMLQAICMNNKLVVLPH-FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSP 62
F YGL + + + +++ + + ++R T+ VP L + SP
Sbjct: 233 KLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP 292
Query: 63 LVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVP 122
+ ++ + + ++ G + G G TE+ + +
Sbjct: 293 NLPARADVAIRICTSAGEALPREIGERFTAHFGC---EILDGIGSTEMLHIFLSNRAGAV 349
Query: 123 -SSSVGKVMPSMKMKVL 138
+ G+ +P ++++
Sbjct: 350 EYGTTGRPVPGYEIELR 366
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 88.1 bits (219), Expect = 1e-20
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 9/138 (6%)
Query: 5 PFFHGYGL-LLMLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPL 63
P FH +GL L +L + + L F + T+L VP + +A++
Sbjct: 204 PLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLP 262
Query: 64 VDQ---YDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD 120
D L+ + G+A + +++ G + + YGMTE + +
Sbjct: 263 ADPELAKALAGARLLVSGSAALPVHDHERIAAATGR---RVIERYGMTETLMNTSVRADG 319
Query: 121 VP-SSSVGKVMPSMKMKV 137
P + +VG +P +++++
Sbjct: 320 EPRAGTVGVPLPGVELRL 337
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 73.1 bits (180), Expect = 2e-15
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 5 PFFHGYGLLL-MLQAICMNNKLVVLP--HF--DGHLFLSSIEKYRVTLLPAVPP----LV 55
PF+H GL+ +L + + L F +L I K R T+ A PP L
Sbjct: 226 PFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVA-PPFGYELC 284
Query: 56 VFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL---GLSMDSMKQGYGMTELTI 112
+ + DLS GA P+ L Q E + YG+ E +
Sbjct: 285 QRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENAL 344
Query: 113 LVTFSDLDVP 122
V+FSD
Sbjct: 345 AVSFSDEASG 354
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 71.3 bits (175), Expect = 7e-15
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 13/130 (10%)
Query: 5 PFFHGYGLLL-MLQAICMNNKLVVLP--HF--DGHLFLSSIEKYRVTLLPAVPP----LV 55
PF+H GL++ + I V+ F ++ + A P L
Sbjct: 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAA-PNFAFELA 296
Query: 56 VFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL---GLSMDSMKQGYGMTELTI 112
+ DL ++ I G+ V +T+ + +R L ++ Y + E T+
Sbjct: 297 ARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATV 356
Query: 113 LVTFSDLDVP 122
V S P
Sbjct: 357 YVATSKPGQP 366
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 69.6 bits (171), Expect = 3e-14
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Query: 5 PFFHGYGLLL-MLQAICMNNKLVVLP--HF--DGHLFLSSIEKYRVTLLPAVPP----LV 55
P H GL+ +L I + +++ F + +L I KY+ T+ + P
Sbjct: 216 PPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYDYC 274
Query: 56 VFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERL---GLSMDSMKQGYGMTELTI 112
V + + DLSS GA PV + T++ + G ++ YG+ E T+
Sbjct: 275 VKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATL 334
Query: 113 LVTFSDLDVPSSSV 126
LVT ++
Sbjct: 335 LVTGGTPGSSYKTL 348
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 64.5 bits (158), Expect = 2e-12
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 1 MALVPFFH--GYGL---LLMLQAICMNNKLVVL-PHFDGHLFLSSIEKYRVTLLPAVPPL 54
+ +VP FH + L ++ A K V+ P D + + VT VP +
Sbjct: 223 LPVVPMFHVNAWCLPYAATLVGA-----KQVLPGPRLDPASLVELFDGEGVTFTAGVPTV 277
Query: 55 VVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILV 114
+ LA + L +L + G + +S + + ER+G+ ++QGYG+TE + +V
Sbjct: 278 WLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGV---EVRQGYGLTETSPVV 333
Query: 115 TFSDL-----DVPS-------SSVGKVMPSMKMKVL 138
+ + + + G +P ++++V
Sbjct: 334 VQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA 369
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 60.3 bits (147), Expect = 4e-11
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 28 LPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA--PVGKS 85
LP FD + L ++ Y + + P + L + L Y L C +
Sbjct: 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYKFPHLQ--NCVTVGESLLPE 337
Query: 86 TLDQVGERLGLS-MDSMKQGYGMTELTILV-TFSDLDVPSSSVGKVMPSMKMKVL 138
TL+ + GL + YG TE + + + +G ++++
Sbjct: 338 TLENWRAQTGLDIRE----SYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQII 388
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 57.0 bits (137), Expect = 5e-10
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 25/162 (15%)
Query: 1 MALVPFFHGYGLLLMLQAI---CMNNKLVVLPHFDGHL-------------------FLS 38
A+ H G + +A+ M + + P + +
Sbjct: 140 AAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQN 199
Query: 39 SIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLSM 98
++ + L PP++ L K P V SL I G + + + +
Sbjct: 200 TLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDC 259
Query: 99 DSMKQGYGMTELTILVTFSDL--DVPSSSVGKVMPSMKMKVL 138
+ YG T + + + P + V+
Sbjct: 260 E-FSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVV 300
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 55.3 bits (134), Expect = 2e-09
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 31 FDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIR-CGAA--PVGKSTL 87
F+ L KY VT A P + FL K L Y+ S+L + A P+
Sbjct: 303 FEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYNFSTL---KYAVVAGEPLNPEVF 358
Query: 88 DQVGERLGLS-MDSMKQGYGMTELTILV-TFSDLDVPSSSVGKVMP 131
++ E G+ M+ G+G TE + + TF ++ S+GK P
Sbjct: 359 NRFLEFTGIKLME----GFGQTETVVTIATFPWMEPKPGSIGKPTP 400
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 47.9 bits (115), Expect = 7e-07
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG-- 78
L LP D ++I + V + + P S Q + +LT+
Sbjct: 215 TLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGE 274
Query: 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKVMP 131
V ST ++ ER + + YG TE T+ ++ ++ +P
Sbjct: 275 ELTV--STARKLFERFPSA--KIINAYGPTEATVALSAIEITREMVDNYTRLP 323
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 47.5 bits (114), Expect = 9e-07
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80
L + +S+E+ + + + P + L ++
Sbjct: 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271
Query: 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKVMP 131
+ ++ ER + ++ YG TE T+ VT + K +P
Sbjct: 272 VLPNEVARKLIERFPKA--TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP 320
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 46.7 bits (112), Expect = 2e-06
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80
L + + ++K + + + P V P Q L
Sbjct: 211 TLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270
Query: 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKVMP 131
+ S + ER + + YG TE T+ VT ++ S + +P
Sbjct: 271 VLPVSVAKALLERFPKA--KIFNTYGPTEATVAVTSVEITNDVISRSESLP 319
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 43.4 bits (103), Expect = 2e-05
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCG-- 78
+L++ D I + V ++ A L L + + + L I G
Sbjct: 674 RLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA---GEDWMKGLRCILFGGE 730
Query: 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSVGKV 129
A V + + +G + YG TE T+ T + S+ +
Sbjct: 731 RASV--PHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSL 777
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 41.3 bits (98), Expect = 1e-04
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 24 KLVVLP---HFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAA 80
L ++ D F I + +T++ P VV L D + S+ + +
Sbjct: 250 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGS 303
Query: 81 PVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLD 120
S +++ E++ YG TE TI T
Sbjct: 304 ATSPSLVNKWKEKVTYI-----NAYGPTETTICATTWVAT 338
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 40.7 bits (96), Expect = 2e-04
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 11/121 (9%)
Query: 26 VVLPHFDGHL--FLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQYDLSSLTNIRCGAAPVG 83
V L + + VT VP L+ P D L + G +
Sbjct: 252 AVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVYLGVGGEKMT 307
Query: 84 KSTLDQVGERLGLSMDSMKQGYGMTELTILVTFSDLDVPSSSV--GKVMPSMKMKVLVKS 141
T +++ ++ YG TE+TI + + S + G + VL
Sbjct: 308 PRTQQIWSSSDRVALVNV---YGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPG 364
Query: 142 H 142
Sbjct: 365 S 365
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 37.9 bits (89), Expect = 0.002
Identities = 21/125 (16%), Positives = 34/125 (27%), Gaps = 18/125 (14%)
Query: 24 KLVVLP--HFDGHLFLSSIEKYRVTLLPAVPPLV-VFLAKSPLVDQYDLSSLTNIRCG-- 78
V+ D + I + L + P L L + G
Sbjct: 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP----DCLGGLRQLLTGGD 286
Query: 79 AAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTF-----SDLDVPSSSVGKVMPSM 133
V + + R + GYG TE T DL+ +GK +
Sbjct: 287 ILSV--PHVRRALLRHPRL--HLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGT 342
Query: 134 KMKVL 138
+ +L
Sbjct: 343 AVLLL 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.033
Identities = 43/216 (19%), Positives = 66/216 (30%), Gaps = 62/216 (28%)
Query: 15 MLQAICMNNKLVVLPHFDGHLFLSSIEKYRVTLLPAVPPLVVFLAKSPLVDQY------- 67
ML +I + V + + K + LPA + + L
Sbjct: 338 ML-SISNLTQEQVQDY---------VNKTN-SHLPAGKQVEISLVNGA--KNLVVSGPPQ 384
Query: 68 DLSSL-TNIRCGAAPVGKSTLDQVGERLGLSMDSMKQGYGMTELTILVTF-SDLDVPSSS 125
L L +R AP G LDQ R+ S K + L + F S L VP+S
Sbjct: 385 SLYGLNLTLRKAKAPSG---LDQ--SRIPFS--ERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 126 VGKVMPSMKMKVLVKSHTMGSQDSFVISGDEIQFAPYC-------RKM--SLGAYLC--- 173
L+ + ++ + +IQ Y R + S+ +
Sbjct: 438 ------------LINKDLVK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 174 -----HWLKL-KGKQT-VLVLGFGSQSCEENLGADN 202
W + K T +L G G S L N
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 26.9 bits (59), Expect = 6.2
Identities = 43/204 (21%), Positives = 69/204 (33%), Gaps = 62/204 (30%)
Query: 1 MALVPF-FHGYGLLLMLQAICMNNKLVVLPHFDGHLF--LSSIEKYRVTLLPAVPPLVVF 57
+ +P G++ + + L P G L L + L+ AV
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAV-----A 282
Query: 58 LAKSPLVDQYDLSSLTNI--------RC-GAAPVGKSTLDQVGERLGLSMDSMKQGYG-- 106
+A++ + + +S I RC A P ++L + DS++ G
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN--TSL-----PPSILEDSLENNEGVP 335
Query: 107 --MTELTILVTFSDLDVPS--SSVGKV---MPSMKMKV---LVKSHTMGSQDSFVISGDE 156
M L+I S+L V K +P+ K +V LV + V+SG
Sbjct: 336 SPM--LSI----SNLTQEQVQDYVNKTNSHLPAGK-QVEISLVNGA-----KNLVVSG-- 381
Query: 157 IQFAPYCRKMSLGAYLCHWL-KLK 179
P SL L L K K
Sbjct: 382 ---PP----QSLYG-LNLTLRKAK 397
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 28.1 bits (63), Expect = 2.0
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 17/69 (24%)
Query: 43 YRVTLLPAVPPLVV---------FLAKSPLVDQYDLSSLTNIRCGAA-PVGKSTLDQVGE 92
L +P + L + L +++I A P G ++Q
Sbjct: 273 ITCELSENLPGYIFSGVAPVVTEMLWDNGL-------QISDIDLWAIHPGGPKIIEQSVR 325
Query: 93 RLGLSMDSM 101
LG+S +
Sbjct: 326 SLGISAELA 334
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 28.2 bits (63), Expect = 2.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 178 LKGKQTVLVLGFGSQ 192
KG + + V+G+GSQ
Sbjct: 51 FKGIKQIGVIGWGSQ 65
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 28.0 bits (63), Expect = 2.3
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSPLVDQ---YDLSSLTNIRCGAAPVGKSTLDQVGERLGL 96
I+ +R ++ P ++ +A + Q SSL GA P + +R+G+
Sbjct: 178 IQDFRPDIIMVTPSYMLSIADE-IERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI 236
Query: 97 SMDSMKQGYGMTELT 111
YG++E+
Sbjct: 237 ---DAVDIYGLSEVM 248
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 27.9 bits (62), Expect = 2.7
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 17/69 (24%)
Query: 43 YRVTLLPAVPPLVV---------FLAKSPLVDQYDLSSLTNIRCGAA-PVGKSTLDQVGE 92
+ L +P ++ LA + N A P + +D +
Sbjct: 263 WTFYFLNQLPAIIADNLGRSLERALAPLGV-------REWNDVFWVAHPGNWAIIDAIEA 315
Query: 93 RLGLSMDSM 101
+L LS D +
Sbjct: 316 KLQLSPDKL 324
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 27.6 bits (61), Expect = 2.9
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 41 EKYRVTLLPAVPPLVV---FLAKSPLVDQYDLSSLTNIRCGAAPVGKSTLDQVGERLGLS 97
L VP +V A + ++ ++ P G++ LDQV +L L
Sbjct: 266 GGLTFQLHRDVPLMVAKNIENAAEKALSPLGITDWNSVFWMVHPGGRAILDQVERKLNLK 325
Query: 98 MDSM 101
D +
Sbjct: 326 EDKL 329
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 27.2 bits (61), Expect = 3.7
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKSPLVDQYDL--SSLTNIRCGAAPVGKSTLDQVGERLGLS 97
I ++ T L A+P + LA+ + D ++L + GA P ++ L +
Sbjct: 174 ISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV- 232
Query: 98 MDSMKQGYGMTEL 110
+GMTE+
Sbjct: 233 --KAYNSFGMTEM 243
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 27.1 bits (61), Expect = 4.6
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKS--PLVDQYDLSSL 72
++K++V +L P + L ++ D SSL
Sbjct: 346 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 380
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 26.9 bits (60), Expect = 4.6
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 43 YRVTLLPAVPPLVVFLAKS--PLVDQYDLSSLTNIRCGAA-PVGKSTLDQVGERLGLSMD 99
+ L VP + LA + L ++ + +++ G LD + L +
Sbjct: 239 FHFLLDKRVPATMEPLAPALKELAGEHGWDA-SDLDFYIVHAGGPRILDDLSTFLEVDPH 297
Query: 100 SM 101
+
Sbjct: 298 AF 299
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 26.4 bits (58), Expect = 6.9
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 17/71 (23%)
Query: 41 EKYRVTLLPAVPPLVV---------FLAKSPLVDQYDLSSLTNIRCGAA-PVGKSTLDQV 90
LL VP +V + D N A P G + LDQV
Sbjct: 261 AGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDY-------NSIFWIAHPGGPAILDQV 313
Query: 91 GERLGLSMDSM 101
++L L + M
Sbjct: 314 EQKLALKPEKM 324
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase;
HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1
c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A
1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A*
3anm_A* 3anl_A* 3ann_A* 3iie_A
Length = 406
Score = 26.4 bits (59), Expect = 7.3
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 19 ICMNNK--LVVLPHFDGHLFLSSIEKYRVTLLPA 50
I + NK LV G LF+ ++++ + LLP
Sbjct: 128 ILLANKESLVT----CGRLFMDAVKQSKAQLLPV 157
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 26.4 bits (59), Expect = 8.0
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 40 IEKYRVTLLPAVPPLVVFLAKS--PLVDQYDLSSL 72
I++++VT P + L ++ ++ + L SL
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSL 386
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 26.1 bits (58), Expect = 8.7
Identities = 7/15 (46%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 178 LKGKQTVLVLGFGSQ 192
++GK V ++G+GSQ
Sbjct: 14 IQGK-KVAIIGYGSQ 27
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 26.1 bits (57), Expect = 9.2
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 41 EKYRVTLLPAVPPLVVFLAKSPLVDQYDL--SSLTNIRCGAA-PVGKSTLDQVGERLGLS 97
LL VP L+ L D +L +S N A P G + LDQV +L L
Sbjct: 279 AGLVFHLLKDVPGLITKNIGGFLKDTKNLVGASSWNELFWAVHPGGPAILDQVEAKLELE 338
Query: 98 MDSM 101
Sbjct: 339 KGKF 342
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,032,487
Number of extensions: 171262
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 55
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)