BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9669
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
Y A+Y Y PQ DDELELR G + V E+C DGWF GTS+RT++ G FPGNYV P
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
++ + Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP +++K
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
Y A+Y Y PQ DDELELR G + V E+C DGWF GTS+RT++ G FPGNYV P
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
++ + Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP +++K
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
Y A+Y Y+PQ +DELELR G V ++C DGWF G S+RTQ+ G FPGNYVAP
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+R + Y P +E ELELR GD + V ++ DDGW+ G +RT + G FP +++
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
++A++ Y + +EL+L++G V + QDGW KG S T R+G+FP +YV P
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
F + Y + EL+L+ G+ I V K DGW KG TGRTG+FP+ ++
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ + Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++F+K+
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKE 61
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
++ Y PQ +DELEL+ G + + E ++GW+ GT + G+FP N+V
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT--LNNKLGLFPSNFV 59
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+R + Y E E+ R GD I + DDGW GT+QRTGRTG+ PA++++
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
Y A+Y Y Q +DE+ R G + DGW GT QRT R+G+ P NY+
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++F+K
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVK 54
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
++ Y PQ +DELEL+ G + + E ++GW+ GT + G+FP N+V
Sbjct: 6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT--LNNKLGLFPSNFV 53
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 4/55 (7%)
Query: 116 RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
RC V Y P ++ ELEL+VGD+I V + ++GW++G L G+TG+FP++F+K+
Sbjct: 9 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKE 61
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 63 YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ Y PQ DDELEL+ G + V ++GW++G ++G+FP N++
Sbjct: 14 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFI 59
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ Y P ++ ELEL+VGD+I V + ++GW++G L G+TG+FP++F+K+
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKE 72
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 63 YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ Y PQ DDELEL+ G + V ++GW++G ++G+FP N++
Sbjct: 25 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFI 70
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ + Y P +E ELEL VGD+I V ++ ++GW+ GTL + GLFP++F+K+
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNN--KLGLFPSNFVKE 58
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
++ Y PQ +DELEL G V V E ++GW+ GT + G+FP N+V
Sbjct: 9 VLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGT--LNNKLGLFPSNFV 56
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 42 SSHKELRCPECP-TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ 100
SS P P +++ + +AIY Y K+DEL + G++ V ++ DGW++G
Sbjct: 2 SSGSSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGV- 60
Query: 101 RSGVFPGNYV 110
+G+FPGNYV
Sbjct: 61 -TGLFPGNYV 69
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
K I Y + E EL + G +IYV KK DDGWY+G + G TGLFP ++++
Sbjct: 19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVES 71
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
++R + Y E E+ + GD I ++ DDGW GT++RTG TG+ PA++++
Sbjct: 5 RYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
Y A+Y Y +DE+ + G ++ DGW GT +RT +G+ P NYV
Sbjct: 6 YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 57
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
FR + Y E+ + GD I + D+GW GT+QRTGRTG+ PA++++
Sbjct: 6 FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y Y DE+ + G + +GW GT QRT R+G+ P NYV
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A++ + PQ+ EL +RG V T+ + W++G Q R G+FP NYVAP
Sbjct: 9 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVAP 58
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ + + P EL + GD+I + K D W++G L R G+FP++++
Sbjct: 8 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 56
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
Y+A+Y + PQ++++LE+R G + T+ E + W+KG Q R G FP N+V
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFV 59
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 161
SG YVA KF P +LE+R GD+I + + ++ W+KG +Q R G F
Sbjct: 3 SGSSGNTYVALYKFV------PQENEDLEMRPGDIITLLEDSNEDWWKGKIQD--RIGFF 54
Query: 162 PASFMKQ 168
PA+F+++
Sbjct: 55 PANFVQR 61
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 48 RCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPG 107
+ P+ PT+V A++ + PQ+D EL RRG V + W+KG ++G+FP
Sbjct: 153 QVPQQPTYVQ---ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPR 207
Query: 108 NYVAPAK 114
NYV P
Sbjct: 208 NYVTPVN 214
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYV 110
E IA Y +K DDEL +RG + V E C W+K ++ + G P NY+
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYK--AELNGKDGFIPKNYI 53
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
P + + + P + EL R GD I+V D W+KG G+TG+FP +++
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 210
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+P ++ + Y +++DEL L +GS TV E+C DGW++G+ + G FP NYV
Sbjct: 1 IPAFVK-FAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYN--GQIGWFPSNYV 52
Score = 32.3 bits (72), Expect = 0.15, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
Y E EL L G + V +K DGW++G+ G+ G FP++++
Sbjct: 9 YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYN--GQIGWFPSNYV 52
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVAPA 113
IYPY PQ DDELEL G ++ Q +GW GTS T SG+ P NY+ A
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYV----HKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ I PY P ++ ELEL GD I++ +GW GT TG +GL P +++ ++D
Sbjct: 19 LQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKAD 78
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 58 EYI-AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
EY+ A+Y + PQ+D +L L+ G + E+ W+KG+ R+G+FP NYV PA
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVKPA 57
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + P + +L L+ GD + + +K WYKG+ GRTG+FPA+++K
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVK 55
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
V + A+Y ++P+ DEL + G + +T+ W+KGTS+ R+G+ P NYVA
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSK--GRTGLIPSNYVAEQAE 71
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFF 172
P + + G+L ++ + D+ L + G T L+ A D
Sbjct: 72 SIDNPLHEAA------KRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A++ + PQ+ EL +RG V T+ + W++G Q R G+FP NYV P
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVCP 56
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ + + P EL + GD+I + K D W++G L R G+FP++++
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 54
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A++ + PQ+ EL +RG V T+ + W++G Q R G+FP NYV P
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYVCP 56
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ + + P EL + GD+I + K D W++G L R G+FP++++
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 54
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+P ++ + Y +++DEL L GS TV E C DGW++G+ + G FP NYV
Sbjct: 2 IPAFVX-FAYVAEREDELSLVXGSRVTVXEXCSDGWWRGS--YNGQIGWFPSNYV 53
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
Y E EL L G + V + DGW++G+ G+ G FP++++ +
Sbjct: 9 AYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYN--GQIGWFPSNYVLE 55
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+P Y+ + Y +++DEL L +G+ V E+C DGW++G+ + G FP NYV
Sbjct: 5 MPAYVK-FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS--YNGQVGWFPSNYV 56
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
Y E EL L G + V +K DGW++G+ G+ G FP++++ +
Sbjct: 13 YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYVTE 58
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 57 PEYIAIYPYKPQKDDELELRRGS-VYTVTERCQ----DGWFKGTSQRTQRSGVFPGNYVA 111
P + A++ Y+ D+EL LRRG V +++ C +GW+ G + R GVFP NYVA
Sbjct: 30 PVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTG-QLPSGRVGVFPSNYVA 88
Query: 112 P 112
P
Sbjct: 89 P 89
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
I+PY+ Q DDEL ++ G + T+ + C D GW++G + R GVFP N+V
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 56
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMK 167
+ I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +F+K
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 57
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 3 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 61
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 1 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 59
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
I+PY+ Q DDEL ++ G + T+ + C D GW++G + R GVFP N+V
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 63
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMK 167
+ I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +F+K
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 64
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
FR + + P + EL GD+IY+ D W+KGT + GRTGL P++++ +
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 57
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
A+Y ++P+ DEL G + +T+ W+KGTS+ R+G+ P NYVA
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 56
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
V AKF + +E EL GD+I+V + + GW++GTL GRTG FP++++++
Sbjct: 10 VVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLN--GRTGWFPSNYVRE 62
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
A + ++ +DEL +G V VT + GW++GT R+G FP NYV K
Sbjct: 13 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--LNGRTGWFPSNYVREVK 64
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
I+PY+ Q DDEL ++ G + T+ + C D GW++G + R GVFP N+V
Sbjct: 8 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 57
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMK 167
+ I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +F+K
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVK 58
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 3 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 61
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 2 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 60
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 2 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 60
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
FR + + P + EL GD+IY+ D W+KGT + GRTGL P++++ +
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 61
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
A+Y ++P+ DEL G + +T+ W+KGTS+ R+G+ P NYVA
Sbjct: 12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 60
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 1 VTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 44.3 bits (103), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A++ + PQ+D EL RRG V + W+KG ++G+FP NYV P
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTP 54
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ P + EL R GD I+V D W+KG G+TG+FP +++
Sbjct: 9 FDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 52
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTER-CQD-GWFKGTSQRTQRSGVFPGNYV 110
I+PY+ Q DDEL ++ G + T+ + C D GW++G + R GVFP N+V
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFV 61
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFMK 167
+ I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +F+K
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 62
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 1 VTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 1 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 59
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+P Y+ + Y +++DEL L +G+ V E+C DGW++G+ + G FP NYV
Sbjct: 18 MPAYVK-FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS--YNGQVGWFPSNYV 69
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
Y E EL L G + V +K DGW++G+ G+ G FP++++ +
Sbjct: 26 YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYVTE 71
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
++A+Y Y+ + +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 3 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + ++L ++G + + + W++ S T ++G P NYVAPA
Sbjct: 5 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPA 62
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ + + + EL L GD++ +H+K+++GW+ G+L G+ G FPA+++++
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVEE 61
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y ++ ++DDEL L +G + + E+ ++GW+ G+ + G FP YV
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS--LNGKKGHFPAAYV 59
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
V ++A+Y Y+ +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 1 VTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+A + + + NS+ EL + GD+I++ + + W +GT++ G TG+FP SF+K
Sbjct: 16 MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 71
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
A++ + PQ+D EL RRG V + W+KG ++G+FP NYV P
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTPVN 58
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ + + P + EL R GD I+V D W+KG G+TG+FP +++
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R + S EL L+ GD++Y+HK+ D W +G + GR G+FPA++++
Sbjct: 5 RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 54
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 63 YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ ++ Q EL L++G + + + W +G + R G+FP NYV
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYV 53
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
A++ + PQ+D EL RRG V + W+KG ++G+FP NYV P
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTPVN 58
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ + + P + EL R GD I+V D W+KG G+TG+FP +++
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 107 GNYV---APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
GN V A + + + NS+ EL + GD+I++ + + W +GT++ G TG+FP
Sbjct: 166 GNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPL 223
Query: 164 SFMK 167
SF+K
Sbjct: 224 SFVK 227
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ A+F + +E EL + GD+IYV + + GW++GTL GRTG FP++++++
Sbjct: 12 IVKARFN----FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVRE 64
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
A + +K +DEL + +G + VT + GW++GT R+G FP NYV K
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT--LNGRTGWFPSNYVREIK 66
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 13 TGVTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRC 117
+ I +Y Y Q DDEL +G + V + W+KG + + + G+FP NYV +
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--EVSGQVGLFPSNYV-----KL 56
Query: 118 IVPYPPNSEYELELRVGDLIYVHKKRDDGW 147
P+ ++ +L + D++ +++ G+
Sbjct: 57 TTDMDPSQQWCSDLHLLDMLTPTERKRQGY 86
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
Y ++ EL G +I V K D W+KG + +G+ GLFP++++K
Sbjct: 11 YTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVK 55
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + NS+ EL + GD+I++ + + W +GT++ G TG+FP SF+K
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 15/68 (22%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
+Y A+YP++ ++ ++LEL G V V+ ERC GW G ++RT++
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 103 GVFPGNYV 110
G FPG YV
Sbjct: 73 GDFPGTYV 80
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 107 GNYVAPAKF--RCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYK 149
G+ P F R + P+ +LEL GD++ V + + GW
Sbjct: 4 GSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMP 63
Query: 150 GTLQRTGRTGLFPASFMK 167
G +RT + G FP ++++
Sbjct: 64 GLNERTRQRGDFPGTYVE 81
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
++A+Y Y+ +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
A F + Y +E +L G+ + + W++ TG TG P++++ D
Sbjct: 1 ALFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 58
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The P85beta
Subunit Of Phosphatidylinositol 3-Kinase From H.Sapiens,
Northeast Structural Genomics Consortium Target Hr5531e
Length = 88
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 15/68 (22%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
+Y A+YP++ ++ ++LEL G V V+ ERC GW G ++RT++
Sbjct: 8 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 67
Query: 103 GVFPGNYV 110
G FPG YV
Sbjct: 68 GDFPGTYV 75
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 126 EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
E EL R G+ I + +K ++ WY+G + TGR G+FPAS+++ S
Sbjct: 31 EVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVS 74
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
E +A Y +K + EL R+G + + + W++G T R G+FP +YV ++
Sbjct: 19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSR 75
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 13 TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
EY A+Y Y Q DEL+L G + V +DGW+ T +R + G PG+Y+
Sbjct: 10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYL 60
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
++R + Y + EL+L GD++ V + +DGW+ T++R G+ G P S++++
Sbjct: 10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYLEK 62
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R + S EL L+ GD++Y+HK+ D W +G + GR G+FPA++++
Sbjct: 11 RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 60
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 63 YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ ++ Q EL L++G + + + W +G + R G+FP NYV
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYV 59
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVP 120
A+Y ++P+ D EL R G + T+T + + W++G +SG FP +YV + +VP
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHG--QSGFFPLSYV-----QVLVP 70
Query: 121 YP 122
P
Sbjct: 71 LP 72
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + + P ++ EL R GDLI + + D+ WY+G L G++G FP S+++
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLH--GQSGFFPLSYVQ 66
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 10 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYY 59
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
AI+ + P+ +DELEL V + +D W++ + RT GVFP Y
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
IA+Y Y+ DDE+ + T E DGW++G + R G+FP NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYV 61
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ Y + E+ D+I + DDGW++G + GR GLFPA++++
Sbjct: 14 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 62
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 7 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYY 56
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
AI+ + P+ +DELEL V + +D W++ + RT GVFP Y
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYYA 57
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
++A+Y Y+ + + +L ++G + + W+ S T R+G P NYVAP+
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYVAPS 57
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
F + Y +E +L + G+ + + + W+ TGRTG P++++ S
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYVAPS 57
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
EYIA+YPY + +L G VT++ + W T RSG+FP NYV P
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWW---TGSIGDRSGIFPSNYVKP 61
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
++ + PY +L G+ I V +K D W+ G++ R+G+FP++++K D
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGD--RSGIFPSNYVKPKD 63
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
++A+Y Y+ + ++L ++G + + + W++ S T +SG P NYV PA
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA 84
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 57 PEYI-AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
P Y+ A++ + PQ+D EL RRG V + W+KG ++G+FP NYV
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
P + + + P + EL R GD I+V D W+KG G+TG+FP +++
Sbjct: 1 GPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 42 SSHKELRCPEC----PTFVP--EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT 95
+SH +L P P F P + IA+Y Y +DEL +G + V + W++G
Sbjct: 14 ASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG- 72
Query: 96 SQRTQRSGVFPGNYV 110
+ +G+FP NYV
Sbjct: 73 -EINGVTGLFPSNYV 86
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
Y N+E EL G LI V K D W++G + G TGLFP++++K +
Sbjct: 43 YAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--GVTGLFPSNYVKMT 89
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
V AKF + +E EL GD+I+V + + GW++GT GRTG FP++++++
Sbjct: 8 VVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYVRE 60
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
A + ++ +DEL +G V VT + GW++GT R+G FP NYV K
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYVREIK 62
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ DDE+ + T E DGW++G + R G+FP NYV
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYV 62
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ Y + E+ D+I + DDGW++G + GR GLFPA++++
Sbjct: 15 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 63
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 110 VAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
V AKF + +E EL GD+I+V + + GW++GT GRTG FP++++++
Sbjct: 8 VVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYVRE 60
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A + ++ +DEL +G V VT + GW++GT R+G FP NYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 58
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 106 PGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
P V AKF + +E EL GD+I+V + + GW++GT GRTG FP+++
Sbjct: 2 PLGSVVRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNY 55
Query: 166 MKQ 168
+++
Sbjct: 56 VRE 58
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A + ++ +DEL +G V VT + GW++GT R+G FP NYV
Sbjct: 9 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 56
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
Y N+E EL G LI V K D W++G + G TGLFP++++K +
Sbjct: 27 YAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKMT 73
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRC 117
+ IA+Y Y +DEL +G + V + W++G +G+FP NYV +
Sbjct: 20 QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV--TGLFPSNYV-----KM 72
Query: 118 IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 157
P+ ++ +L+ D + +++ G+ +Q R
Sbjct: 73 TTDSDPSQQWCADLQTLDTMQPIERKRQGYIHELIQTEER 112
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYV 110
E IA Y +K DDEL +RG + V E C W+K ++ + G P NY+
Sbjct: 11 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYK--AELNGKDGFIPKNYI 62
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L + G+ + + + W+ TG+TG P++++ SD
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
E I + Y+ Q DDEL + G + T + GW++G Q R G+FP N+V K
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFVREIK 57
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
Y + EL + VG++I +K D GW++G Q GR GLFP +F+++
Sbjct: 10 YQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFVRE 55
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L + G+ + + + W+ TG+TG P++++ SD
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L + G+ + + + W+ TG+TG P++++ SD
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ DDE+ + T E DGW++G + R G+FP NYV
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYV 69
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ Y + E+ D+I + DDGW++G + GR GLFPA++++
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 70
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
P +A+Y Y + DEL + RG + V + + W+ G+ + Q G FP N+VA
Sbjct: 6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQE-GYFPANHVA 60
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSDFF 172
+ Y N EL + GD+I V K ++ W+ G++ + G+ G FPA+ + +
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANHVASETLY 65
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 7 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
F + Y +E +L + G+ + + + W+ TG+TG P++++ S
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R + + P +E EL + GD+I + + D+ WY+G L G++G FP ++++
Sbjct: 15 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GQSGFFPINYVE 64
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y ++P+ + EL + G + T+T + + W++G +SG FP NYV
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GQSGFFPINYV 63
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 3 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 60
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L + G+ + + + W+ TG+TG P++++ SD
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPSD 61
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 7 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
F + Y +E +L + G+ + + + W+ TG+TG P++++ S
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A+Y ++ ++DEL R G V V + W+ G + + G+FP NYVAP
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 55
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
AIY ++ +D+EL + G + TV + W+KG + Q G+FP N+V
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--QGIGLFPSNFV 69
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPAK 114
+YI Y Y DDEL +R G + ++ Q +GW +G + R G+FP N+V K
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEG--ELNGRRGMFPDNFVKEIK 58
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 118 IVPYPPNSEY--ELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
IV Y ++ + EL +RVG++I V K +++GW +G L GR G+FP +F+K+
Sbjct: 5 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVKE 56
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A+Y ++ ++DEL R G V V + W+ G + + G+FP NYVAP
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 59
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A+Y ++ ++DEL R G V V + W+ G + + G+FP NYVAP
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 56
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y ++P+ + EL + G + T+T + + W++G SG FP NYV
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHG--HSGFFPINYV 59
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R + + P +E EL + GD+I + + D+ WY+G L G +G FP ++++
Sbjct: 11 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINYVE 60
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 142
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 100 QRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTG 159
QR+G G F + Y +E +L + G+ + + + W+ TG+TG
Sbjct: 76 QRAGPLAGGVTT---FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTG 132
Query: 160 LFPASFMKQSD 170
P++++ SD
Sbjct: 133 YIPSNYVAPSD 143
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A+Y ++ ++DEL R G V V + W+ G + + G+FP NYVAP
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG--RLHNKLGLFPANYVAP 57
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
EL+ VGD I + +DGW +G+L+ GRTG+FP F+K
Sbjct: 29 ELDFEVGDKIRILATLEDGWLEGSLK--GRTGIFPYRFVK 66
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y ++ + +EL+ G + +DGW +G+ + R+G+FP +V
Sbjct: 17 VALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLK--GRTGIFPYRFV 65
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
EL L+ GD++Y++K+ D WY+G + GR G+FP ++++
Sbjct: 23 ELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRTYIE 60
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L + G+ + + + W+ TG+TG P++++ SD
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 40.0 bits (92), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYVAPAK 114
+YI Y Y DDEL +R G + ++ Q +GW +G + R G+FP N+V K
Sbjct: 2 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEG--ELNGRRGMFPDNFVKEIK 57
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 128 ELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
EL +RVG++I V K +++GW +G L GR G+FP +F+K+
Sbjct: 16 ELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVKE 55
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A+Y Y P ++L+LR+G Y + E W++ + Q G P NYV A+
Sbjct: 5 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQ-EGYIPSNYVTEAE 58
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
K + Y P + +L+LR GD ++ ++ + W++ + G+ G P++++ +++
Sbjct: 3 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRAR-DKNGQEGYIPSNYVTEAE 58
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A+Y Y P ++L+LR+G Y + E W++ + Q G P NYV A+
Sbjct: 12 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQE-GYIPSNYVTEAE 65
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
K + Y P + +L+LR GD ++ ++ + W++ + G+ G P++++ +++
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRAR-DKNGQEGYIPSNYVTEAE 65
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIV 119
IAIY ++P+ DE+ + G + V DG+ KG +++ R+G++P +Y K V
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYP-SYKVREKIET-V 503
Query: 120 PYPPNSEYE 128
YP E E
Sbjct: 504 KYPTYPEAE 512
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
I + P + E+ + GD+I V DG+ KG ++ GRTGL+P+
Sbjct: 447 AIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPS 493
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYV 110
P+ +A+Y + ++ +L R+G V T+ ++ Q+ W+ T + R G+FP NYV
Sbjct: 4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWW--TGRVNGREGIFPANYV 57
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 128 ELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMK 167
+L R GD+I + KK D + W+ G + GR G+FPA++++
Sbjct: 19 DLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVE 58
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+YPY D+L ++G V E + W+K S T++ G P NYVA
Sbjct: 11 VALYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYVA 61
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y ++P+ D+EL L G + ++ + GW ++ ++G+ P +V+
Sbjct: 9 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ + P ++ EL L GD++++ K GW + +TGL P F+
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y ++ +D+EL + G + TV + W++G + R +G+FP N+V
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRG--TGLFPSNFV 57
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ R + + + EL + G+LI V D W++G R TGLFP++F+
Sbjct: 7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRG--TGLFPSNFV 57
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 52 CPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
PTF A++ YK Q++DEL + ++ E+ GW++G ++ FP NYV
Sbjct: 2 SPTFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRG-DYGGKKQLWFPSNYV 59
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y ++P+ D+EL L G + ++ + GW ++ ++G+ P +V+
Sbjct: 5 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ + P ++ EL L GD++++ K GW + +TGL P F+
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 6 LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
L ++LEC +C++ K+L C HT C++CLE+++ SS +RCP C
Sbjct: 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+Y ++P+ EL + G + T+T + + W++G SG FP NYV
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHG--ESGFFPINYV 55
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R + + P ++ EL + GD+I + + D+ WY+G + G +G FP ++++
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y ++ +D+EL + G + V + W+KG + R G+FP N+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG--IGLFPSNFV 69
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+YP++ +KD+ L + V TV E+ QD W+ G Q + G FP +YV
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQ-QDMWWFGEVQG--QKGWFPKSYV 63
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
V ++A+Y Y + +L +G + + E W++ S T +G P NYVAP
Sbjct: 6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV 63
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 52 CPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
PTF A++ YK Q++DEL + ++ E+ + GW++G ++ FP NYV
Sbjct: 2 SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRG-DYGGKKQLWFPSNYV 59
>pdb|1PNJ|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
pdb|2PNI|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
Length = 86
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERC---------------QDGWFKGTSQRTQRS 102
+Y A+Y YK +++++++L G + TV + + GW G ++ T
Sbjct: 9 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTGER 68
Query: 103 GVFPGNYVAPAKFRCIVP 120
G FPG YV + I P
Sbjct: 69 GDFPGTYVEYIGRKKISP 86
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 158
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 9 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTGER 68
Query: 159 GLFPASFMK 167
G FP ++++
Sbjct: 69 GDFPGTYVE 77
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
IA++ Y+P D +L +G + E+ + W+K S T + G P N+VA A
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN 63
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 103 GVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 162
G+ P A AKF + +++ E+ R G+ I + ++ D+ WY+G + T R G+FP
Sbjct: 1 GIDPFTGEAIAKFN----FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFP 56
Query: 163 ASFM 166
+++
Sbjct: 57 ITYV 60
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
F E IA + + E+ R+G T+ + + W++G T R G+FP YV K
Sbjct: 5 FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 6 LNDLLECSVCLD-RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L D EC +C+D R D +LPC H+FC+KC+++ H+ CP C
Sbjct: 12 LTDEEECCICMDGRADL---ILPCAHSFCQKCIDKWSDRHRN--CPIC 54
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
IA++ Y+P D +L +G + E+ + W+K S T + G P N+VA A
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 62
>pdb|1PHT|A Chain A, Phosphatidylinositol 3-Kinase P85-Alpha Subunit Sh3
Domain, Residues 1-85
Length = 85
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERC---------------QDGWFKGTSQRTQRS 102
+Y A+Y YK +++++++L G + TV + + GW G ++ T
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 103 GVFPGNYVAPAKFRCIVP 120
G FPG YV + I P
Sbjct: 67 GDFPGTYVEYIGRKKISP 84
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 158
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 159 GLFPASFMK 167
G FP ++++
Sbjct: 67 GDFPGTYVE 75
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
V ++A+Y Y + +L +G + + + W++ S T +G P NYVAP
Sbjct: 6 VTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVAP 62
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
IA++ Y+P D +L +G + E+ + W+K S T + G P N+VA A
Sbjct: 8 IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN 61
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+R I Y S E+ L GD++ V +K + GW+ Q + G PASF++ D
Sbjct: 13 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPLD 66
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 26 LPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE-YIAIYPYKPQKDDELELRRGSVYTVT 84
+ + + E + S E PE P + E Y+AI Y + DE+ L G V
Sbjct: 50 MKAKRGWIPASFLEPLDSPDETEDPE-PNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVI 108
Query: 85 ERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ DGW+ ++ +G FP Y+
Sbjct: 109 HKLLDGWW--VIRKDDVTGYFPSMYL 132
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
IA++ Y+P D +L +G + E+ + W+K S T + G P N+VA A
Sbjct: 4 IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 56
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+R I Y S E+ L GD++ V +K + GW+ Q + G PASF++ D
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPLD 67
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 26 LPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE-YIAIYPYKPQKDDELELRRGSVYTVT 84
+ + + E + S E PE P + E Y+AI Y + DE+ L G V
Sbjct: 51 MKAKRGWIPASFLEPLDSPDETEDPE-PNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVI 109
Query: 85 ERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ DGW+ ++ +G FP Y+
Sbjct: 110 HKLLDGWW--VIRKDDVTGYFPSMYL 133
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
P P IA++ Y+P D +L +G + E+ + W+K S T + G P N+
Sbjct: 6 PASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNF 64
Query: 110 VAPAK 114
VA A
Sbjct: 65 VAKAN 69
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
A AKF + +++ E+ R G+ I + ++ D+ WY+G + T R G+FP +++
Sbjct: 10 AIAKFN----FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
E IA + + E+ R+G T+ + + W++G T R G+FP YV
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
P P IA++ Y+P D +L +G + E+ + W+K S T + G P N+
Sbjct: 6 PASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNF 64
Query: 110 VAPAK 114
VA A
Sbjct: 65 VAKAN 69
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
A+Y Y+ + +D+L +G + + + W++ S T +G P Y+AP
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV 62
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + Y +E +L G+ + + W++ TG TG P+ ++ D
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 15/68 (22%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERC---------------QDGWFKGTSQRTQRS 102
+Y A+Y YK +++++++L G + TV + + GW G ++ T
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 103 GVFPGNYV 110
G FPG YV
Sbjct: 67 GDFPGTYV 74
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 158
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 159 GLFPASFMK 167
G FP ++++
Sbjct: 67 GDFPGTYVE 75
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG-TSQRTQRSGVFPGNYV 110
+A Y Y + DEL L+ G + E +GW++G T ++ + G+FP +Y+
Sbjct: 15 VAFYNYDARGADELSLQIGDTVHILE-TYEGWYRGYTLRKKSKKGIFPASYI 65
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPASFMKQSDFFI 173
EL L++GD +++ + + GWY+G TL++ + G+FPAS++ + +
Sbjct: 27 ELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFPASYIHLKEAIV 72
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + + Y + EL + GD I VH+K GW++G L G+ G PA++++
Sbjct: 6 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQ 57
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y Y Q DEL + G V ++ GW++G + + G P NYV
Sbjct: 9 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEG--ELNGKRGWVPANYV 56
>pdb|1PKS|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
pdb|1PKT|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
Length = 79
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 15/68 (22%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERC---------------QDGWFKGTSQRTQRS 102
+Y A+Y YK +++++++L G + TV + + GW G ++ T
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 103 GVFPGNYV 110
G FPG YV
Sbjct: 67 GDFPGTYV 74
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 158
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 159 GLFPASFMK 167
G FP ++++
Sbjct: 67 GDFPGTYVE 75
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 110 VAPAKFRCIVPYP--PNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFM 166
+ +K R IV Y S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F+
Sbjct: 2 ASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 60 IAIYPYKPQKDDELELRRGS-VYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
I Y + + DEL ++ G VY + ++ W+ + +SG+ P ++ P +
Sbjct: 10 IVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
P P+ A+Y Y Q DEL + + + GW+ G + Q G+FP NYV
Sbjct: 2 PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQ--GLFPNNYV 57
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ + Y EL D+I + K+ GW+ G L+ G+ GLFP +++ +
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNYVTK 59
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 37.0 bits (84), Expect = 0.006, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y+ ++L ++G V E + W+K S T++ G P NYVA
Sbjct: 4 VALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 54
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y D+L ++G V E + W+K S T++ G P NYVA
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 57
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
TF A++ YK Q++DEL + ++ E+ GW++G ++ FP NYV
Sbjct: 1 TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRG-DYGGKKQLWFPSNYV 56
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + + Y + EL + GD I VH+K GW++G L G+ G PA++++
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQ 56
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y Y Q DEL + G V ++ GW++G + + G P NYV
Sbjct: 8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEG--ELNGKRGWVPANYV 55
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+R I Y S E+ L GD++ V +K + GW+ Q + G PASF++ D
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPLD 67
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 26 LPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE-YIAIYPYKPQKDDELELRRGSVYTVT 84
+ + + E + S E PE P + E Y+AI Y + DE+ L G V
Sbjct: 51 MKAKRGWIPASFLEPLDSPDETEDPE-PNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVI 109
Query: 85 ERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ DGW+ ++ +G FP Y+
Sbjct: 110 HKLLDGWW--VIRKDDVTGYFPSMYL 133
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+R I Y S E+ L GD++ V +K + GW+ Q + G PASF++ D
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLEPLD 67
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 26 LPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE-YIAIYPYKPQKDDELELRRGSVYTVT 84
+ + + E + S E PE P + E Y+AI Y + DE+ L G V
Sbjct: 51 MKAKRGWIPASFLEPLDSPDETEDPE-PNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVI 109
Query: 85 ERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ DGW+ ++ +G FP Y+
Sbjct: 110 HKLLDGWW--VIRKDDVTGYFPSMYL 133
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE 58
T++DLL C +C + + + + C H +C C+ + +S + CP C V E
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTCCVTVTE 69
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y D+L ++G V E + W+K S T++ G P NYVA
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 57
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y+ ++L ++G V E + W+K S T++ G P NYVA
Sbjct: 13 VALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 63
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 124 NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
S EL L+ GD+IY+ ++ GW G L + G P ++MK
Sbjct: 13 GSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y+ ++L ++G V E + W+K S T++ G P NYVA
Sbjct: 6 VALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 56
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y+ ++L ++G V E + W+K S T++ G P NYVA
Sbjct: 12 VALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 62
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWF-------KGTSQRTQRSGVFPGNYVA 111
++A++ Y+ + ++L R G V + +GW+ KGT Q G P NYVA
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA 69
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVAP 112
V ++A+Y Y+ + +L +G + + + G W++ S T +G P NYVAP
Sbjct: 6 VTLFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAP 63
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y+ ++L ++G V E + W+K S T++ G P NYVA
Sbjct: 13 VALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 63
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYV 110
+Y+ + YK Q++ EL L+ G V V E+ + G WF TS+ G P Y+
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQ---GWVPATYL 60
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y+ ++L ++G V E + W+K S T++ G P NYVA
Sbjct: 29 VALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 79
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 62 IYPYKPQKDDELELRRGSVYTVT--ERCQDGWFKGTSQRTQRSGVFPGNYV 110
++PY +DEL R G + + E + GW+KG + + GVFP N+
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKG--ELNGKEGVFPDNFA 60
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
++ + Y +LE + GD+I V K ++ W +G + G+ G+FP F++ S
Sbjct: 6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEG--ESKGKVGIFPKVFVEDS 60
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A++ Y+ + ++LE + G + V + + W +G S+ + G+FP +V
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKG--KVGIFPKVFV 57
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
P A Y Y +D+EL E D W+ G ++ G+FP NYV+
Sbjct: 2 AMAPWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 59
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
Y + EL D I + DD W+ G L++ G GLFP++++
Sbjct: 13 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R + + P ++ EL++ G++++V KK +D W T+ G+ GL P ++++
Sbjct: 11 RVLFGFVPETKEELQVMPGNIVFVLKKGNDNWA--TVMFNGQKGLVPCNYLE 60
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
++ + P+ +EL++ G++ V ++ D W T + G+ P NY+ P
Sbjct: 12 VLFGFVPETKEELQVMPGNIVFVLKKGNDNW--ATVMFNGQKGLVPCNYLEPV 62
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
P A Y Y +D+EL E D W+ G ++ G+FP NYV+
Sbjct: 1 APWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 56
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
Y + EL D I + DD W+ G L++ G GLFP++++
Sbjct: 10 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
P A Y Y +D+EL E D W+ G ++ G+FP NYV+
Sbjct: 1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
Y + EL D I + DD W+ G L++ G GLFP++++
Sbjct: 9 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y + ++ +L ++G V T+ ++ Q+ W+ T + + G+FP NYV
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWW--TGRTNGKEGIFPANYV 57
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 128 ELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFMKQS 169
+L + GD+I + KK D + W+ G + G+ G+FPA++++ S
Sbjct: 19 DLAFKKGDVITILKKSDSQNDWWTG--RTNGKEGIFPANYVRVS 60
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 35.0 bits (79), Expect = 0.019, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYV 110
E IA +K DDEL +RG + V E W+K ++ + G P NY+
Sbjct: 2 EAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYK--AELNGKDGFIPKNYI 53
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A+Y Y+ + +D+L +G + + + W++ S T +G P Y+AP
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAP 63
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFK---GTSQRTQRSGVFPGNYVA 111
P+Y+ ++ +K + D+EL R G V+ V + + W+ + G P NY+A
Sbjct: 11 PKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFMKQSD 170
K+ + + ++ EL R GD+ +V +K + W+ L G G P +++ + +
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 116 RCIVPYP--PNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R IV Y S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F++
Sbjct: 4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYV 110
Y A+YP++ + DE+ G + V E+ + GW G+ Q G FP NYV
Sbjct: 8 YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYV 59
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT-SQRTQRSGVFPGNYV 110
A+Y YK ++ DEL RG++ + GW+KG R Q+ FP NYV
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQ--YFPSNYV 60
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y Y+ Q+ DEL + G T E + GW KG Q G++P NYV
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQ-VGLYPANYV 482
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ R + Y EL + GD L + + + GW KG L G+ GL+PA++++
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYVE 483
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
EYIA+ + Q+ +L ++G + V E+ DGW+ + G+ P Y+ P
Sbjct: 12 EYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNE-GLVPRTYLEP 65
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + + Y + +L+ GD+I + ++ D+ WY+G + G +G+FPAS ++
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVE 60
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYV 110
IY + DDEL G V VT E Q+ W + +R GVFP ++V
Sbjct: 6 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 107 GNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD--GWYKGTLQRTGRTGLFPAS 164
GN P + + + +L + GD I V K D W++G L+ G+TG+FPA+
Sbjct: 12 GNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLR--GQTGIFPAN 69
Query: 165 FM 166
++
Sbjct: 70 YV 71
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQD--GWFKGTSQRTQRSGVFPGNYV 110
E A+Y ++ Q+ +L + G TV + W++G + ++G+FP NYV
Sbjct: 19 EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEG--KLRGQTGIFPANYV 71
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
E IA + + DDEL R+G + + D W++ ++ + G+ P NY+
Sbjct: 2 EAIAKHDFSATADDELSFRKGQILKILNMEDDSNWYR--AELDGKEGLIPSNYI 53
>pdb|2GQI|A Chain A, Solution Structure Of The Sh3 Domain Of Human Ras Gtpase-
Activating Protein 1
Length = 71
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 114 KFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ R I+PY P+++ E+ GD+ VH + +DGW T RT GL +++
Sbjct: 9 RVRAILPYTKVPDTD-EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 64
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 61 AIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
AI PY D DE+ +G ++ V +DGW T+ RT G+ + V
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 62
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + DE+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 58
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 33.5 bits (75), Expect = 0.069, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + D E+ +++G + T+ W+K + R G P YV
Sbjct: 5 LALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 53
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
A+Y K + D EL G+V+ Q+ GW +GT ++G+ P NYV
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT--LNGKTGLIPENYV 63
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 128 ELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
EL G + VH ++ GW +GTL G+TGL P ++++
Sbjct: 26 ELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENYVE 64
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 61 AIYPYKPQKDDELELRRGSVYT-VTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y Y Q+ DEL + G T + E + GW +G Q G++P NYV
Sbjct: 8 ALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQL-GLYPANYV 57
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYP 64
+L+ L C +CLD L + C H FC C+ + S + ECPT + ++
Sbjct: 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK----ECPTCRKKLVSKRS 105
Query: 65 YKP 67
+P
Sbjct: 106 LRP 108
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 32.7 bits (73), Expect = 0.10, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + DE+ +++G + T+ W+K + R G P YV
Sbjct: 5 LALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 53
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S EL ++ GD++ + + W+K ++ GR G PA+++K+ D
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNGRQGFVPAAYLKKLD 62
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ +Y Y+ + EL +++G + T+ W+K + R G P Y+
Sbjct: 10 LVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNGRQGFVPAAYL 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 6 LNDLLECSVCLDRLD--TSSKVLP-CQHTFCKKCLEEIVSSHKELRCPEC 52
++D +EC+VCL L+ ++ LP C H F +C++ + SH CP C
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST--CPLC 49
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPY 65
L LL CS C + L + C+H FC C+ + + + CP C + P +I
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG----CPVC--YTPAWIQDLKI 72
Query: 66 KPQKDDELEL 75
Q D ++L
Sbjct: 73 NRQLDSMIQL 82
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A + Y + EL RRG V + ER W++G + G+ P Y+
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRG--EHNGMRGLIPHKYI 62
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
Y + EL R GD++ +H++ W++G + G GL P ++
Sbjct: 18 AYTGRTAQELSFRRGDVLRLHERASSDWWRG--EHNGMRGLIPHKYI 62
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
Length = 68
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 47 LRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS---G 103
+ PE P V +A +PYK +D+L + VT W+ G Q + G
Sbjct: 1 MSEPEVPFKV---VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEG 57
Query: 104 VFPGNYVA 111
+FP ++VA
Sbjct: 58 IFPKSFVA 65
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 115 FRCIVPYPPNSEYE--LELRVGDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFM 166
F+ + +P S+YE L I V D WY G Q + G+FP SF+
Sbjct: 8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYP 64
+L+ L C +CLD L + C H FC C+ + S + ECPT + ++
Sbjct: 49 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK----ECPTCRKKLVSKRS 104
Query: 65 YKP 67
+P
Sbjct: 105 LRP 107
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 62 IYPYKPQKDDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYV 110
IY + DDEL G V VT E Q+ W + +R GVFP ++V
Sbjct: 16 IYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 114 KFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
KF +P S EL L+ GD++++ + GW L + G P ++M
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 114 KFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
KF +P S EL L+ GD++++ + GW L + G P ++M
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
+A+Y Y +L ++G V E + W+K S T++ G P NYVA
Sbjct: 7 VALYDYYSPFSWDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 57
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 114 KFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFM 166
KF +P S EL L+ GD++++ + GW L + G P ++M
Sbjct: 5 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 58
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 47 LRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS---G 103
+ PE P V +A +PYK +D+L + VT W+ G Q + G
Sbjct: 2 MSEPEVPFKV---VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEG 58
Query: 104 VFPGNYVA 111
+FP ++VA
Sbjct: 59 IFPKSFVA 66
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 115 FRCIVPYPPNSEYE--LELRVGDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFM 166
F+ + +P S+YE L I V D WY G Q + G+FP SF+
Sbjct: 9 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 65
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE 58
L + CS+C L ++ + C HTFCK C+ + + RCP+C V +
Sbjct: 12 LTPYILCSICKGYLIDATTITECLHTFCKSCI--VRHFYYSNRCPKCNIVVHQ 62
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIV 119
+A+Y ++ + +L L RG Y + E+ W++ + G P NYV K +
Sbjct: 6 VAMYDFQATEAHDLRLERGQEYIILEKNDLHWWR-ARDKYGSEGYIPSNYVTGKKSNNLD 64
Query: 120 PY 121
Y
Sbjct: 65 QY 66
>pdb|2J05|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J05|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J06|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
pdb|2J06|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
Length = 65
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 114 KFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ R I+PY P+++ E+ GD VH + +DGW T RT GL +++
Sbjct: 7 RVRAILPYTKVPDTD-EISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEE 62
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 61 AIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
AI PY D DE+ +G + V +DGW T+ RT G+ + V
Sbjct: 10 AILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLV 60
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTE---RCQDGWFKGTSQRTQRSGVFPGN 108
A+Y + DEL R+G + TV E + DGW+ R G+ PGN
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWW--LCSLHGRQGIVPGN 56
>pdb|4FSS|A Chain A, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|B Chain B, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|C Chain C, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
Length = 62
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 114 KFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ R I+PY P+++ E+ GD VH + +DGW T RT GL +++
Sbjct: 4 RVRAILPYTKVPDTD-EISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEE 59
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 61 AIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
AI PY D DE+ +G + V +DGW T+ RT G+ + V
Sbjct: 7 AILPYTKVPDTDEISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLV 57
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYP 64
+L+ L C +CLD L + C H FC C+ + S + ECPT + ++
Sbjct: 30 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK----ECPTCRKKLVSKRS 85
Query: 65 YKP 67
+P
Sbjct: 86 LRP 88
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
K+ + PY S+ E+ G + V +K +GW+ ++ G+ G PAS++K++
Sbjct: 10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWW--YIRYLGKEGWAPASYLKKA 63
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+Y+ + PY Q DE+ +G V + +GW+ + + G P +Y+ AK
Sbjct: 10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWW--YIRYLGKEGWAPASYLKKAK 64
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
Y S E+ ++ GD++ + + W+K ++ GR G PA+++K+ D
Sbjct: 10 YQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNGRQGFVPAAYVKKLD 57
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 5 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNGRQGFVPAAYV 53
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 116 RCIVPYPPNSEYE---LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
RC YP + E L G+LI + + D GW++G + G G FPAS+++
Sbjct: 5 RCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGE-KEDGLRGWFPASYVQ 58
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
E IA Y + + +L +G V T+ +D W+K + + R G+ P NYV
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYV 65
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 112 PAKFRCIVPYP--PNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
P+ CI Y +E +L GD L V +D WYK + GR G+ PA+++++
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK-NKVGREGIIPANYVQK 67
Query: 169 SD 170
+
Sbjct: 68 RE 69
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
E IA Y + + +L +G V T+ +D W+K + R G+ P NYV
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYK-AKNKVGREGIIPANYV 65
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 112 PAKFRCIVPYP--PNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
P+ CI Y +E +L GD L V +D WYK + GR G+ PA+++++
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK-NKVGREGIIPANYVQK 67
Query: 169 SD 170
+
Sbjct: 68 RE 69
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 31.2 bits (69), Expect = 0.30, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQD--GWFKGTSQRTQRSGVFPGNY 109
AIY Y+ Q DDE+ + G + TV R D GW G + G+FP +Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVI-RGDDGSGWTYGECDGLK--GLFPTSY 52
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
E IA Y + + +L +G V T+ +D W+K + R G+ P NYV
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYK-AKNKVGREGIIPANYV 65
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 112 PAKFRCIVPYP--PNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
P+ CI Y +E +L GD L V +D WYK + GR G+ PA+++++
Sbjct: 9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK-NKVGREGIIPANYVQK 67
Query: 169 SD 170
+
Sbjct: 68 RE 69
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine
Exchange Factor (Gef) 16
Length = 79
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
E+ L+ D++ V ++ +DGW G R G TG FP F +
Sbjct: 33 EVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFAR 71
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+P+ + ++ DE+ L++ V V ++ +DGW G R +G FP ++
Sbjct: 17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFA 70
>pdb|2BA1|A Chain A, Archaeal Exosome Core
pdb|2BA1|B Chain B, Archaeal Exosome Core
pdb|2BA1|C Chain C, Archaeal Exosome Core
pdb|3M7N|A Chain A, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|B Chain B, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|C Chain C, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M85|A Chain A, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|B Chain B, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|C Chain C, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 179
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 8 DLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
D+L+ V D RL T + + C C E+V L+CPEC
Sbjct: 116 DILKARVIGDNLRLSTKEEEMGVLRALCSNCKTEMVREGDILKCPEC 162
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFP 106
A+Y Y+ Q DDEL G++ + + DG+++G + R GVFP
Sbjct: 13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEG--EFNGRIGVFP 59
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P +YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPASYV 58
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PAS++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPASYVKKLD 62
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 12 CSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +CL+ + TS + VLPC H + C EE++ + RCP C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLC 49
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 58
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLD 62
>pdb|2RQR|A Chain A, The Solution Structure Of Human Dock2 Sh3 Domain - Elmo1
Peptide Chimera Complex
Length = 119
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG-TSQRTQRSGVFPGNYV 110
+AIY ++ +L L+ G V + E C D W++G + G+FP +++
Sbjct: 63 VAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFI 113
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTL-QRTGRTGLFPASFM 166
+L L++GD++ + + D WY+G L + G+FP SF+
Sbjct: 75 QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFI 113
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 71 DELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFPGNYV 110
D+L ++ V TV E R ++ W++G + RT G FP N V
Sbjct: 291 DKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVV 331
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K ++ R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--TEVNGRQGFVPAAYV 58
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K + GR G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVN--GRQGFVPAAYVKKLD 62
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 58
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDG--WFKGTSQRTQRSGVFPGNYVA 111
+YP+ ++EL +G V E+ ++ W+K + R Q G+ P NYV
Sbjct: 7 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVV 58
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQDG--WFKGTSQRTQRSGVFPGNYVA 111
+YP+ ++EL +G V E+ ++ W+K + R Q G+ P NYV
Sbjct: 11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVV 62
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAGYV 58
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA ++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAGYVKKLD 62
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+C +C++ L LPC HT CK C + V L CP C
Sbjct: 17 QCGICMEIL-VEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFC 56
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 8 DLLECSVCLD-RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYK 66
+ L C+ +D LD SK+ P H + K L P+ F +Y +I PY
Sbjct: 81 NTLACTRRIDTNLDKVSKIYPLPHMYVIKDL-----------VPDLSNFYAQYKSIEPYL 129
Query: 67 PQKDDELELRRGSVYTVTER 86
+KD+ E ++ + ++ ER
Sbjct: 130 KKKDESQEGKQQYLQSIEER 149
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTER 86
A++ Y+PQ DDEL ++ G T+ R
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHR 200
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 53 PTFVPE---YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
P + PE IA+Y Y+ EL LRR Y + + + W++ R G P +Y
Sbjct: 13 PLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWR-VQDRNGHEGYVPSSY 71
Query: 110 VA 111
+
Sbjct: 72 LV 73
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
LN L C +C ++ ++ C H+FCK C+ + + K CP C
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPIC 56
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTER 86
A++ Y+PQ DDEL ++ G T+ R
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHR 200
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 8 DLLECSVCLD-RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYK 66
+ L C+ +D LD SK+ P H + K L P+ F +Y +I PY
Sbjct: 81 NTLACTRRIDTNLDKVSKIYPLPHMYVIKDL-----------VPDLSNFYAQYKSIEPYL 129
Query: 67 PQKDDELELRRGSVYTVTER 86
+KD+ E ++ + ++ ER
Sbjct: 130 KKKDESQEGKQQYLQSIEER 149
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
LN L C +C ++ ++ C H+FCK C+ + + K CP C
Sbjct: 8 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
LN L C +C ++ ++ C H+FCK C+ + + K CP C
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPIC 56
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S EL ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 VLYDYQEKSPRELTIKKGDILTLLNSTNKDWWK--VEVNDRQGFIPAAYLKKLD 62
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ +Y Y+ + EL +++G + T+ W+K + R G P Y+
Sbjct: 10 LVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWK--VEVNDRQGFIPAAYL 58
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 62 IYPYKPQKDDELELRRGSVYTVTERCQDG--WFKGTSQRTQRSGVFPGNYVA 111
+YP+ ++EL +G V E+ ++ W+K + R Q G+ P NYV
Sbjct: 23 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVV 73
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 58
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLD 62
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 58
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLD 62
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG-TSQRTQRSGVFPGNYV 110
+AIY ++ +L L+ G V + E C D W++G + G+FP +++
Sbjct: 21 VAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKXLQGIFPKSFI 71
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTL-QRTGRTGLFPASFM 166
+L L++GD++ + + D WY+G L + G+FP SF+
Sbjct: 33 QLSLQIGDVVRIQETCGD-WYRGYLIKHKXLQGIFPKSFI 71
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 9 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 57
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLD 61
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
IA+Y Y+ EL LRR Y + + + W++ R G P +Y+
Sbjct: 12 IALYDYQTNDPQELALRRNEEYCLLDSSEIHWWR-VQDRNGHEGYVPSSYLV 62
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVADRQGFVPAAYV 58
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVADRQGFVPAAYVKKLD 62
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 12 CSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +CL+ + TS + VLPC H + C EE++ + RCP C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLC 49
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S EL ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYLKKLD 62
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ +Y Y+ + EL +++G + T+ W+K + R G P Y+
Sbjct: 10 LVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYL 58
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGYVPAAYV 58
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGYVPAAYVKKLD 62
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT------QRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + T +R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYV 66
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG------RTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ T R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVKKLD 70
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 21 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 69
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+
Sbjct: 22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKK 71
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 9 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYV 57
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKLD 61
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + +P N +L + G+++ + +K ++ W+ + GR G+ P ++++
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSAR-NKDGRVGMIPVPYVEK 180
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT------QRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + T +R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYV 66
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG------RTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ T R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVKKLD 70
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + +P N +L + G+++ + +K ++ W+ + GR G+ P ++++
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSAR-NKDGRVGMIPVPYVEK 180
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 122 PPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPASFMK 167
P N E E+ L+ GDL+ + K RD W+K + G G P ++++
Sbjct: 25 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWK-VRTKNGNIGYIPYNYIE 74
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 122 PPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPASFMK 167
P N E E+ L+ GDL+ + K RD W+K + G G P ++++
Sbjct: 25 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWK-VRTKNGNIGYIPYNYIE 74
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 5 TLNDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKE-LRCPEC 52
+ +LEC +CL+ + S+K C H FCK C+ ++++ K +CP C
Sbjct: 17 AMQKILECPICLELIKEPVSTK---CDHIFCKFCMLKLLNQKKGPSQCPLC 64
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 122 PPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPASFMK 167
P N E E+ L+ GDL+ + K RD W+K + G G P ++++
Sbjct: 18 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWK-VRTKNGNIGYIPYNYIE 67
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEI-VSSHKELRCPECPTFV 56
L + + C +CLD L + C H FC KC+ +I +S +CP C T V
Sbjct: 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVGDRQGFVPAAYV 58
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVGDRQGFVPAAYVKKLD 62
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ R G PA+++K+ D
Sbjct: 11 VLYDYQEKSPREVTIKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYLKKLD 62
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ +Y Y+ + E+ +++G + T+ W+K + R G P Y+
Sbjct: 10 LVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYL 58
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT------QRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + T +R G P YV
Sbjct: 5 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT------GRTGLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ T R G PA+++K+ D
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT------QRSGVFPGNYV 110
+A+Y Y+ + E+ +++G + T+ W+K + T +R G P YV
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 66
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRT----GLFPASFMKQSD 170
+ Y S E+ ++ GD++ + + W+K ++ T G+T G PA+++K+ D
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 70
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVT-----ERCQDGWFKGTSQRTQRS----- 102
P F+ + A + Y DEL+L+ G V V E +GW G +
Sbjct: 7 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLE 66
Query: 103 ---GVFPGNYV 110
GVFP N+
Sbjct: 67 KCRGVFPENFT 77
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVT-----ERCQDGWFKGTSQRTQRS----- 102
P F+ + A + Y DEL+L+ G V V E +GW G +
Sbjct: 41 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELE 100
Query: 103 ---GVFPGNY 109
GVFP N+
Sbjct: 101 KCRGVFPENF 110
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
IA + Y Q+D EL++++ + + + W R+G P NYV
Sbjct: 8 IAKWDYTAQQDQELDIKKNERLWLLDDSKTWW--RVRNAANRTGYVPSNYV 56
>pdb|2EGE|A Chain A, Solution Structure Of The Third Sh3 Domain From Human
Kiaa1666 Protein
Length = 75
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 129 LELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMKQ 168
L LR GD++ V+ DD G+Y G L G GL PA +
Sbjct: 31 LALRAGDVVMVYGPMDDQGFYYGEL--GGHRGLVPAHLLDH 69
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + Y + E+ + GD I V + GW K TG TGL P ++++
Sbjct: 5 KVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>pdb|2KYM|A Chain A, Solution Structure Of The Bem1p Sh3-Ci Domain From
L.Elongisporus In Complex With Ste20p Peptide
Length = 120
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 52 CPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTS-QRTQRSGVFPGNYV 110
P F + +Y +K ++DDEL++ G ++ WF R G+ P +YV
Sbjct: 2 APLFA---VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58
Query: 111 ------APAKFRCIVPY 121
PAK+ + Y
Sbjct: 59 RIIDLMDPAKYASVDTY 75
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +CL+ S LPC H FC C+ + + CP C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP--TCPLC 46
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
IA + Y Q+D EL++++ + + + W R+G P NYV
Sbjct: 35 IAKWDYTAQQDQELDIKKNERLWLLDDSKTWW--RVRNAANRTGYVPSNYV 83
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 58
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Irtks-Sh3
And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 107 GNYVAPAKFRCIVPYPPNSEYEL-ELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPAS 164
G+++ K + I P+ S L GD+I + + DGW G + G FP+S
Sbjct: 1 GSHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSS 60
Query: 165 FMK 167
+ K
Sbjct: 61 YTK 63
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 56
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 18 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 69
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 73 LELRRGSVYTVTERCQDGWFKG---TSQR-TQRSGVFPGNYV 110
L +R G V TV E+ DG +KG SQR T R G FP V
Sbjct: 36 LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 129 LELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPASFMK 167
L +R GD+I V ++ DG +KG + T R G FP ++
Sbjct: 36 LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVE 78
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 24 KVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
K+LPC HT C CLE ++CP C
Sbjct: 20 KLLPCLHTLCSGCLEA-----SGMQCPIC 43
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 58
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 56
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 189
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCL 37
EC +CL L + + PC H FCK C+
Sbjct: 27 ECPICLMALREAVQT-PCGHRFCKACI 52
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 140 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 191
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 189
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 6 LNDLLE----CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ND+LE C +C + + L C H+FC C+ E + +++ CP C
Sbjct: 57 MNDVLENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMK--RKIECPIC 104
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 11 ECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPEC 52
+C++CL L+ V LPC H F + C+++ + ++K +CP C
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPIC 57
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 55
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEK 56
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERC---QDGWFKGTSQRTQRSGVFPGNYV 110
A+Y P DEL RG + T+ E+ +GW+K R G+ P N +
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWK--CLLHGRQGLAPANRL 62
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +C + D K+ PC H C CL S + CP C
Sbjct: 335 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFC 373
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +C + D K+ PC H C CL S + CP C
Sbjct: 335 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFC 373
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +C + D K+ PC H C CL S + CP C
Sbjct: 337 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +C + D K+ PC H C CL S + CP C
Sbjct: 337 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFC 375
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCL 37
EC +CL L + + PC H FCK C+
Sbjct: 8 ECPICLMALREAVQT-PCGHRFCKACI 33
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 8 DLLECSVCLDRLDTSSKVLPC-QHTFCKKCLEEIVSSHKELRCPEC 52
D L C +C D + T + V+PC +++C +C+ + E CP C
Sbjct: 12 DELLCLICKDIM-TDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 56
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
L + + C +CLD L + C H FC KC+ +I +S +CP C
Sbjct: 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 10 LECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
LEC VC + L S + LPC H F C+ + H CP C
Sbjct: 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVC 58
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCL 37
EC +CL L + + PC H FCK C+
Sbjct: 20 ECPICLMALREAVQT-PCGHRFCKACI 45
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 6 LNDLLE----CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ND+LE C +C + + L C H+FC C+ E + +++ CP C
Sbjct: 46 MNDVLENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMK--RKIECPIC 93
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCL 37
CSVCL+ L ++ C H FCK C+
Sbjct: 18 CSVCLEYLK-EPVIIECGHNFCKACI 42
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +C + D K+ PC H C CL S + CP C
Sbjct: 341 CKICAEN-DKDVKIEPCGHLMCTSCLTAWQESDGQ-GCPFC 379
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-------ELRCPEC-PTFVPEYI 60
C +CL+ L T L C H+FC+ CL ++HK E CP C ++ PE I
Sbjct: 22 CPICLELL-TQPLSLDCGHSFCQACL---TANHKKSMLDKGESSCPVCRISYQPENI 74
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 6 LNDLLE----CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ND+LE C +C + + L C H+FC C+ E + +++ CP C
Sbjct: 46 MNDVLENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMK--RKIECPIC 93
>pdb|1SPK|A Chain A, Solution Structure Of Rsgi Ruh-010, An Sh3 Domain From
Mouse Cdna
Length = 72
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 114 KFRCIVPYPP-NSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
K + I P+ N++ L GD L + + DGW G T G FP+S+ K
Sbjct: 9 KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ +Y Y+ + E+ +++G + T+ W+K + R G P Y+
Sbjct: 10 LVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWK--VEVDDRQGFIPAAYL 58
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 26.6 bits (57), Expect = 8.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 39 EIVSSHKELRCP---ECPTFVPEYIAIYPYKP 67
E SS KEL P +CP+ + ++I+ Y KP
Sbjct: 33 EFNSSAKELPRPLAEKCPSIIKKFISAYDAKP 64
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 12 CSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C VC+ ++ +VLPC H F KC+++ + +++ CP C
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT--CPIC 66
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE 58
EC++CL LPC+H FC C++ +S RC C +PE
Sbjct: 17 ECAICLQTC-VHPVSLPCKHVFCYLCVKG--ASWLGKRCALCRQEIPE 61
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCL 37
EC +CL L + + PC H FCK C+
Sbjct: 20 ECPICLMALREAVQT-PCGHRFCKACI 45
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 8 DLLECSVCLDRLDTSSKVLPC-QHTFCKKCLEEIVSSHKELRCPEC 52
D L C +C D + T + V+PC +++C +C+ + E CP C
Sbjct: 14 DELLCLICKDIM-TDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
R + + N + +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 5 RALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAE-DMDGKRGMIPVPYVEK 56
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFV--PEYIAIYPYKPQ 68
C +C + D K+ PC H C CL S + CP C + E I + P+ P+
Sbjct: 27 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEIKGTEPIVVDPFDPR 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,690,231
Number of Sequences: 62578
Number of extensions: 241388
Number of successful extensions: 1053
Number of sequences better than 100.0: 319
Number of HSP's better than 100.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 500
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)