RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9669
(173 letters)
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 96.1 bits (240), Expect = 4e-27
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
++A++ Y + +EL+L++G V + QDGW KG S T R+G+FP +YV P
Sbjct: 7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63
Score = 69.5 bits (171), Expect = 1e-16
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
F + Y + EL+L+ G+ I V K DGW KG TGRTG+FP+ ++
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 95.0 bits (237), Expect = 1e-26
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
Y A+Y Y+PQ +DELELR G V ++C DGWF G S+RTQ+ G FPGNYVAP
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
Score = 77.3 bits (191), Expect = 9e-20
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+R + Y P +E ELELR GD + V ++ DDGW+ G +RT + G FP ++
Sbjct: 9 PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNY 60
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 98.5 bits (245), Expect = 1e-26
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 20/134 (14%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ Y AI Y+ E+ L G V V E+ + GW+ + + G P +++ P
Sbjct: 8 FIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGWIPASFLEP 65
Query: 113 A----------------KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG 156
+ I Y E+ L G+ + V K DGW+
Sbjct: 66 LDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD--D 123
Query: 157 RTGLFPASFMKQSD 170
TG FP+ ++++S
Sbjct: 124 VTGYFPSMYLQKSG 137
Score = 63.1 bits (153), Expect = 5e-13
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 39 EIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR 98
E + S E PE Y+AI Y + DE+ L G V + DGW+
Sbjct: 64 EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD- 122
Query: 99 TQRSGVFPGNYVAPAK 114
+G FP Y+ +
Sbjct: 123 -DVTGYFPSMYLQKSG 137
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 94.3 bits (235), Expect = 3e-26
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ AI+ + P+ +DELEL V + +D W++ + RT GVFP Y
Sbjct: 7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 62
Score = 81.9 bits (203), Expect = 2e-21
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 93.4 bits (233), Expect = 4e-26
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ AI+ + P+ +DELEL V + +D W++ + RT GVFP Y
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59
Score = 82.2 bits (204), Expect = 9e-22
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 113 AKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 89.9 bits (223), Expect = 2e-24
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ----DGWFKGTSQ 97
S +++R T IYPY PQ DDELEL G ++ Q +GW GTS
Sbjct: 6 SGSRDIRFANHET----LQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSL 61
Query: 98 RTQRSGVFPGNYVAPAK 114
T SG+ P NY+ A
Sbjct: 62 TTGCSGLLPENYITKAD 78
Score = 76.0 bits (187), Expect = 7e-19
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFMKQS 169
+ I PY P ++ ELEL GD I++ +GW GT TG +GL P +++ ++
Sbjct: 18 TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77
Query: 170 D 170
D
Sbjct: 78 D 78
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 88.0 bits (219), Expect = 7e-24
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ Y A+Y Y Q +DE+ R G + DGW GT QRT R+G+ P NY+
Sbjct: 6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
Score = 77.3 bits (191), Expect = 9e-20
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+R + Y E E+ R GD I + DDGW GT+QRTGRTG+ PA++
Sbjct: 8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANY 59
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 93.4 bits (231), Expect = 2e-23
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 50/172 (29%)
Query: 43 SHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS 102
+ L + + + + +++ +L +G + + W++ +
Sbjct: 134 TEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTT- 192
Query: 103 GVFPGNYVA---------------------------------------------PAKFRC 117
G+ P NYV PAK +
Sbjct: 193 GLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKV 252
Query: 118 IVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
PN +L ++ G + V +K +G YK L G+ G P ++++
Sbjct: 253 TFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYLR 302
Score = 62.2 bits (150), Expect = 4e-12
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 21/125 (16%)
Query: 63 YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS-------------------- 102
Y ++ DE + E +DG + +S
Sbjct: 78 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 137
Query: 103 GVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 162
+ + E +L G+ + + K + W++ G TGL P
Sbjct: 138 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVP 196
Query: 163 ASFMK 167
A++++
Sbjct: 197 ANYVQ 201
Score = 57.9 bits (139), Expect = 1e-10
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 3/100 (3%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKD 70
E S + ++ SS P P +
Sbjct: 205 EFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKA-KVTFDRVPNAYDP 263
Query: 71 DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+L +++G VT++ +G +K + G P Y+
Sbjct: 264 TQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYL 301
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 86.5 bits (215), Expect = 2e-23
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y ++P+ D+EL L G + ++ + GW ++ ++G+ P +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
Score = 80.7 bits (200), Expect = 3e-21
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + + P ++ EL L GD++++ K GW + +TGL P F
Sbjct: 3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEF 54
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 85.0 bits (211), Expect = 9e-23
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A+Y ++P+ D+EL L G + ++ + GW ++ ++G+ P +V+ +
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
Score = 80.4 bits (199), Expect = 7e-21
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + + P ++ EL L GD++++ K GW + +TGL P F
Sbjct: 7 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEF 58
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 83.9 bits (208), Expect = 3e-22
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
S + +P+ + ++ DE+ L++ V V ++ +DGW G R
Sbjct: 3 SGSSGWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGE 61
Query: 102 SGVFPGNYVAP 112
+G FP ++
Sbjct: 62 TGWFPEDFARF 72
Score = 73.2 bits (180), Expect = 6e-18
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + E+ L+ D++ V ++ +DGW G R G TG FP F +
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFAR 71
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 82.7 bits (205), Expect = 9e-22
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T V ++A+Y Y+ +D+L +G + + + W++ S T +G P NYVAP
Sbjct: 12 GTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71
Query: 113 A 113
Sbjct: 72 V 72
Score = 61.2 bits (149), Expect = 2e-13
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
G+ T R+ G F + Y +E +L G+ + + W++
Sbjct: 1 GSMTGTLRTRGGTG----VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSL 56
Query: 154 RTGRTGLFPASFMKQSD 170
TG TG P++++ D
Sbjct: 57 TTGETGYIPSNYVAPVD 73
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 80.1 bits (198), Expect = 1e-20
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+ A+Y Y+ + +D+L +G + + + W++ S T +G P Y+AP
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
Score = 59.3 bits (144), Expect = 1e-12
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
F + Y +E +L G+ + + W++ TG TG P+ +
Sbjct: 5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIY 58
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 79.7 bits (197), Expect = 1e-20
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
V ++A+Y Y + +L +G + + E W++ S T +G P NYVAP
Sbjct: 6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
Score = 56.6 bits (137), Expect = 2e-11
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
F + Y +L G+ + + W++ TG TG P+++
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNY 59
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 79.3 bits (196), Expect = 2e-20
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 59 YIAIYPY-KPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
AI PY K DE+ +G ++ V +DGW T+ RT G+ + V
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 64
Score = 66.5 bits (163), Expect = 1e-15
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 114 KFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ R I+PY E+ GD+ VH + +DGW T RT GL +++
Sbjct: 9 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 64
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 78.3 bits (193), Expect = 1e-19
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
V ++A+Y Y+ + ++L ++G + + + W++ S T +SG P NYV P
Sbjct: 24 TGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVP 83
Query: 113 AK 114
A
Sbjct: 84 AD 85
Score = 56.7 bits (137), Expect = 2e-11
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 95 TSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 154
+S S G F + Y + +L + G+ + + W++
Sbjct: 10 SSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIA 69
Query: 155 TGRTGLFPASFMKQSD 170
TG++G P++++ +D
Sbjct: 70 TGKSGYIPSNYVVPAD 85
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 77.1 bits (190), Expect = 2e-19
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ Y +++DEL L +G+ V E+C DGW++G+ + G FP NYV
Sbjct: 14 YDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYVTE 71
Score = 68.6 bits (168), Expect = 4e-16
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 106 PGNYVAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
PG + V Y E EL L G + V +K DGW++G+ G+ G FP+
Sbjct: 9 PGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPS 66
Query: 164 SFMK 167
+++
Sbjct: 67 NYVT 70
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 76.5 bits (189), Expect = 2e-19
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ ++ + P+ +EL++ G++ V ++ D W + G+ P NY+ P
Sbjct: 8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATV--MFNGQKGLVPCNYLEP 61
Score = 67.2 bits (165), Expect = 9e-16
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
R + + P ++ EL++ G++++V KK +D W G+ GL P ++
Sbjct: 9 AHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF--NGQKGLVPCNY 58
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 81.9 bits (201), Expect = 3e-19
Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 53/169 (31%)
Query: 49 CPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGN 108
A++ + +++L ++G + + ++ ++ W+ + G+ P
Sbjct: 127 VILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVP 185
Query: 109 YV------------------------------------------------APAKFRCIVP 120
YV P R I
Sbjct: 186 YVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQK 245
Query: 121 YPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
PN+ + L L VG+L+ V K G ++G G+ G FP + ++
Sbjct: 246 RVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 292
Score = 55.0 bits (131), Expect = 1e-09
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
+ I L L G + VT+ G ++G + G FP +
Sbjct: 233 LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTH 290
Query: 110 VAP 112
V
Sbjct: 291 VRL 293
Score = 51.5 bits (122), Expect = 2e-08
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 3/130 (2%)
Query: 40 IVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRT 99
I SS P P P ++ + D E + + D
Sbjct: 62 INSSGPRPPVPPSPAQPPPGVSPSRLRI-GDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120
Query: 100 QRSGVFPGNYV-APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 158
R G R + + N E +L + GD++ + K ++ W+ G+
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKR 179
Query: 159 GLFPASFMKQ 168
G+ P ++++
Sbjct: 180 GMIPVPYVEK 189
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 75.1 bits (185), Expect = 6e-19
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 59 YIAIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
AI PY D DE+ +G ++ V +DGW T+ RT G+ + V
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62
Score = 73.2 bits (180), Expect = 3e-18
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 112 PAKFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ R I+PY + E+ GD+ VH + +DGW T RT GL ++
Sbjct: 5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 75.8 bits (186), Expect = 6e-19
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRSG 103
Y A+YP++ ++ ++LEL G V V+ ERC GW G ++RT++ G
Sbjct: 14 YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 73
Query: 104 VFPGNYV 110
FPG YV
Sbjct: 74 DFPGTYV 80
Score = 65.4 bits (159), Expect = 6e-15
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 15/70 (21%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKR---------------DDGWYKGTLQRT 155
++R + P+ +LEL GD++ V + GW G +RT
Sbjct: 10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERT 69
Query: 156 GRTGLFPASF 165
+ G FP ++
Sbjct: 70 RQRGDFPGTY 79
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 74.7 bits (183), Expect = 2e-18
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVT-------------ERCQD--GWFKGTSQRTQRS 102
+Y A+Y YK +++++++L G + TV E + GW G ++ T
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 103 GVFPGNYVAP 112
G FPG YV
Sbjct: 67 GDFPGTYVEY 76
Score = 62.4 bits (151), Expect = 1e-13
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTG 156
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 157 RTGLFPASFMK 167
G FP ++++
Sbjct: 65 ERGDFPGTYVE 75
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 73.5 bits (181), Expect = 3e-18
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
P IA++ Y+P D +L +G + E+ + W+K S T + G P N+VA
Sbjct: 3 PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61
Query: 113 A 113
A
Sbjct: 62 A 62
Score = 50.4 bits (121), Expect = 2e-09
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
Y P+ + +L G+ + + ++ + W+K TG+ G P +F+ ++
Sbjct: 14 SYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 62
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 79.9 bits (196), Expect = 3e-18
Identities = 19/87 (21%), Positives = 36/87 (41%)
Query: 82 TVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHK 141
E Q ++ ++ I + P + E+ + GD+I V
Sbjct: 412 VAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAG 471
Query: 142 KRDDGWYKGTLQRTGRTGLFPASFMKQ 168
DG+ KG ++ GRTGL+P+ +++
Sbjct: 472 NHWDGYSKGVNRKLGRTGLYPSYKVRE 498
Score = 76.4 bits (187), Expect = 5e-17
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 46 ELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVF 105
+ IAIY ++P+ DE+ + G + V DG+ KG +++ R+G++
Sbjct: 432 DDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLY 491
Query: 106 PGNYVAPAKFRCIVPYPPNSE 126
P V V YP E
Sbjct: 492 PSYKVREKIE--TVKYPTYPE 510
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 73.4 bits (181), Expect = 3e-18
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
+ + + +A+Y Y P ++L+LR+G Y + E W++ + + G P NY
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNY 60
Query: 110 VAPAK 114
V A+
Sbjct: 61 VTEAE 65
Score = 53.4 bits (129), Expect = 2e-10
Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
K + Y P + +L+LR GD ++ ++ + W++ + G+ G P++++ +++
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEAE 65
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 72.3 bits (178), Expect = 8e-18
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ EY A+Y Y Q DEL+L G + V +DGW+ +R + G PG+Y+
Sbjct: 5 SSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTV--ERNGQRGFVPGSYLEK 62
Score = 63.4 bits (155), Expect = 2e-14
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
++R + Y + EL+L GD++ V + +DGW+ G+ G P S+++
Sbjct: 10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER--NGQRGFVPGSYLE 61
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 72.3 bits (178), Expect = 1e-17
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+Y+ + PY Q DE+ +G V + +GW+ + G P +Y+ AK
Sbjct: 9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLG--KEGWAPASYLKKAK 64
Score = 59.2 bits (144), Expect = 9e-13
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 107 GNYVAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 164
G+ + + + + PY S+ E+ G + V +K +GW+ G+ G PAS
Sbjct: 1 GSSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPAS 58
Query: 165 FMKQSD 170
++K++
Sbjct: 59 YLKKAK 64
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 72.1 bits (177), Expect = 2e-17
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
E + +A+Y Y+ ++L ++G V E + W+K S T++ G P NY
Sbjct: 19 REAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNY 77
Query: 110 VAPAK 114
VA
Sbjct: 78 VARVD 82
Score = 54.4 bits (131), Expect = 1e-10
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
G + + + Y +L + GD + V ++ W+K
Sbjct: 7 GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSL 65
Query: 154 RTGRTGLFPASF 165
T + G P+++
Sbjct: 66 ATRKEGYIPSNY 77
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 70.8 bits (174), Expect = 4e-17
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ + +Y+ + YK Q++ EL L+ G V V E+ + GW+ ++ G P Y+
Sbjct: 5 SSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFV--STSEEQGWVPATYLEA 62
Score = 57.7 bits (140), Expect = 3e-12
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
++ + Y EL L+ G+++ V +K + GW+ + G PA++++ +
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS--EEQGWVPATYLEAQN 64
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 70.3 bits (173), Expect = 5e-17
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
E IA + + E+ R+G T+ + + W++G T R G+FP YV
Sbjct: 8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
Score = 62.6 bits (153), Expect = 5e-14
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ +++ E+ R G+ I + ++ D+ WY+G + T R G+FP ++
Sbjct: 16 FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITY 60
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 70.5 bits (173), Expect = 6e-17
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT---SQRTQRSGVFPGNYVAPAKF 115
Y ++L L G + + ++ GW++G + ++ G FP ++V
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP 69
Query: 116 RCIVPYPPNS 125
P+S
Sbjct: 70 SSERASGPSS 79
Score = 67.5 bits (165), Expect = 8e-16
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASFMK 167
+ Y + +L L G LI + KK GW++G LQ + + G FPAS +K
Sbjct: 11 QVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 70.0 bits (172), Expect = 6e-17
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
EYIA+ + Q+ +L ++G + V E+ DGW+ + G+ P Y+ P
Sbjct: 10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNE-GLVPRTYLEPYS 67
Score = 55.4 bits (134), Expect = 3e-11
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
++ + + +L + G+++ V +K+ DGW+ + G GL P ++++
Sbjct: 12 EYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRTYLEPYS 67
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 70.0 bits (172), Expect = 6e-17
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A+YPY D+L ++G V E W+K S T++ G P NYVA
Sbjct: 8 DIVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVAKLN 64
Score = 50.7 bits (122), Expect = 2e-09
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
PY +L + G+ + V ++ W+K T + G P+++
Sbjct: 15 PYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNY 59
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 69.2 bits (170), Expect = 1e-16
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ + ++ Y PQ +DELEL+ G + + E ++GW+ GT + G+FP N+V
Sbjct: 4 GSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKE 61
Score = 64.6 bits (158), Expect = 8e-15
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 110 VAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ K +C V Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++F+K
Sbjct: 3 LGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 60
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 69.3 bits (170), Expect = 1e-16
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+++ + +AIY Y K+DEL + G++ V ++ DGW++G +G+FPGNYV
Sbjct: 14 RSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNG--VTGLFPGNYVES 71
Score = 63.1 bits (154), Expect = 4e-14
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
G+S + P +Y+ K I Y + E EL + G +IYV KK DDGWY+G +
Sbjct: 1 GSSGSSGDPPWAPRSYLE--KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN 58
Query: 154 RTGRTGLFPASF 165
G TGLFP ++
Sbjct: 59 --GVTGLFPGNY 68
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 68.4 bits (168), Expect = 2e-16
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 57 PEYIAIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
P + A Y + EL L++G V +T GW G + G P Y+ P
Sbjct: 1 PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
Score = 60.3 bits (147), Expect = 3e-13
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 114 KFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
F +P S EL L+ GD+IY+ ++ GW G L + G P ++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAY 54
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 68.4 bits (168), Expect = 3e-16
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ A+Y ++P+ DEL G + +T+ W+KGTS+ R+G+ P NYVA
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYVAE 61
Score = 59.9 bits (146), Expect = 5e-13
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
FR + + P + EL GD+IY+ D W+KGT + GRTGL P+++
Sbjct: 9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNY 58
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 69.4 bits (170), Expect = 3e-16
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 94 GTSQRTQRSGVFPGNYV-------------APAKFRCIV--PYPPNSEYELELRVGDLIY 138
G+S + + G FP ++V + I Y N+E EL G LI
Sbjct: 1 GSSGSSGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLIN 60
Query: 139 VHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
V K D W++G + G TGLFP++++K
Sbjct: 61 VMNKDDPDWWQGEIN--GVTGLFPSNYVK 87
Score = 64.4 bits (157), Expect = 2e-14
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 39 EIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR 98
+++ E P V + IA+Y Y +DEL +G + V + W++G
Sbjct: 18 KLLGPSSERATPAFHP-VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEING 76
Query: 99 TQRSGVFPGNYV 110
+G+FP NYV
Sbjct: 77 --VTGLFPSNYV 86
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 68.4 bits (168), Expect = 3e-16
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
E++AI Y + +L RG + + W+ G +R G P N+V
Sbjct: 7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWG--ERAGCCGYIPANHVGK 61
Score = 55.0 bits (133), Expect = 4e-11
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+F I Y E +L G+ I + ++ W+ G G G PA+
Sbjct: 9 EFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANH 58
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 68.0 bits (167), Expect = 4e-16
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
P A Y Y +D+EL E D W+ G ++ G+FP NYV
Sbjct: 1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
Score = 60.7 bits (148), Expect = 2e-13
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
Y + EL D I + DD W+ G L++ G GLFP+++
Sbjct: 9 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNY 53
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 67.6 bits (166), Expect = 5e-16
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
+ A+Y + PQ+D +L L+ G + E+ W+KG+ R+G+FP NYV PA
Sbjct: 2 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNG--RTGIFPANYVKPA 57
Score = 58.3 bits (142), Expect = 1e-12
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ P + +L L+ GD + + +K WYKG+ GRTG+FPA+++K
Sbjct: 10 QFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN--GRTGIFPANYVK 55
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 67.7 bits (166), Expect = 5e-16
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 112 PAKFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASF 165
+ + I + ++ L + GDLI + + DGW+ G ++T G FP S+
Sbjct: 7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSY 62
Score = 66.6 bits (163), Expect = 1e-15
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 57 PEYIAIYPYKP-QKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
AI+ + L + G + T+ +DGW G S++T+ G FP +Y
Sbjct: 8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 67.6 bits (166), Expect = 5e-16
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
++ Y PQ +DELEL+ G + + E ++GW+ GT + G+FP N+V
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKE 55
Score = 61.5 bits (150), Expect = 1e-13
Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+C V Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++F+K
Sbjct: 3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 54
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 67.7 bits (166), Expect = 5e-16
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGT---SQRTQRSGVFP 106
PE P V +A +PYK +D+L + VT W+ G S G+FP
Sbjct: 4 PEVPFKV---VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFP 60
Query: 107 GNYV 110
++V
Sbjct: 61 KSFV 64
Score = 55.8 bits (135), Expect = 2e-11
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR---TGRTGLFPASF 165
P K PY + E +L I V D WY G Q G+FP SF
Sbjct: 7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSF 63
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 67.3 bits (165), Expect = 6e-16
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 57 PEYIAIYPYKPQK-DDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
P++ A Y + EL L++G + ++ GW + G P Y+ P K
Sbjct: 3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
Score = 58.1 bits (141), Expect = 2e-12
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 114 KFRCIVPYPPN-SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
KF +P + S EL L+ GD++++ + GW L + G P ++
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAY 56
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 67.4 bits (165), Expect = 6e-16
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG---TSQRTQRSGVFPGNYVAPA 113
P+Y+ ++ +K + D+EL R G V+ V + + W+ + G P NY+A
Sbjct: 11 PKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER 70
Query: 114 K 114
+
Sbjct: 71 E 71
Score = 47.8 bits (114), Expect = 2e-08
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLFPASF 165
K+ + + ++ EL R GD+ +V +K + W+ L G G P ++
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNY 66
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 69.0 bits (168), Expect = 7e-16
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTV-----TERCQDGWFKGTSQR--------T 99
P F+ + A + Y DEL+L+ G V V E +GW G +
Sbjct: 41 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELE 100
Query: 100 QRSGVFPGNYVAP 112
+ GVFP N+
Sbjct: 101 KCRGVFPENFTER 113
Score = 57.0 bits (137), Expect = 2e-11
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYV-----HKKRDDGWYKGTLQR--------TGRTGL 160
K + Y EL+L+ GD++ V +++D+GW G + G+
Sbjct: 46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 105
Query: 161 FPASF 165
FP +F
Sbjct: 106 FPENF 110
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 67.3 bits (165), Expect = 8e-16
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
F E IA + + E+ R+G T+ + + W++G T R G+FP YV K
Sbjct: 5 FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
Score = 61.5 bits (150), Expect = 1e-13
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 110 VAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ P I + +++ E+ R G+ I + ++ D+ WY+G + T R G+FP ++
Sbjct: 2 IDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITY 59
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 67.2 bits (164), Expect = 8e-16
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ Y +++DEL L GS TV E C DGW++G + G FP NYV
Sbjct: 3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRG--SYNGQIGWFPSNYV 53
Score = 47.1 bits (112), Expect = 3e-08
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
Y E EL L G + V + DGW++G+ G+ G FP++++ +
Sbjct: 9 AYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN--GQIGWFPSNYVLE 55
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 67.5 bits (165), Expect = 8e-16
Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+ Y RRG V W+K S T R PG VA
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESYIPGICVARVS 74
Score = 50.5 bits (121), Expect = 3e-09
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
YP R G+ + V + GW+K TGR P
Sbjct: 26 YPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGIC 69
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 67.0 bits (164), Expect = 1e-15
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 42 SSHKELRCPECP-TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRT 99
SS R P + I + K EL R+G V T+ E C++ W++ +
Sbjct: 2 SSGSSGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTS 61
Query: 100 QRSGVFPGNYVAPAK 114
+ G+ +
Sbjct: 62 GQEGLLAAGALRERS 76
Score = 56.6 bits (137), Expect = 1e-11
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTL 152
G+S R PG K + EL R GD++ + + WY+
Sbjct: 4 GSSGRMPTRRWAPGTQCI-TKC----EHTRPKPGELAFRKGDVVTILEACENKSWYRVKH 58
Query: 153 QRTGRTGLFPASFMKQSD 170
+G+ GL A +++
Sbjct: 59 HTSGQEGLLAAGALRERS 76
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 67.4 bits (165), Expect = 1e-15
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A+Y Y D+L ++G V E + W+K S T++ G P NYVA
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60
Score = 48.9 bits (117), Expect = 1e-08
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
Y S +L + GD + V ++ W+K T + G P+++
Sbjct: 11 DYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNY 55
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 66.5 bits (163), Expect = 1e-15
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ + Y PQ DDELEL+ G + V ++GW++G ++G+FP N++
Sbjct: 4 GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG--KTGMFPSNFIKE 61
Score = 61.5 bits (150), Expect = 1e-13
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ RC V Y P ++ ELEL+VGD+I V + ++GW++G L G+TG+FP++F
Sbjct: 4 GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNF 58
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 66.5 bits (163), Expect = 1e-15
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
P P+ A+Y Y Q DEL + + + GW+ G + + G+FP NYV
Sbjct: 2 PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNYVTK 59
Score = 59.9 bits (146), Expect = 5e-13
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 112 PAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+C Y EL D+I + K+ GW+ G L+ G+ GLFP ++
Sbjct: 3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNY 56
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 67.0 bits (164), Expect = 1e-15
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 6 LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSH-KELRCPECPTFVP 57
L ++LEC +C++ K+L C HT C++CLE++++S +RCP C
Sbjct: 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 66.7 bits (163), Expect = 2e-15
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ-------RSGVFPGN 108
++A++ Y+ + ++L R G V + +GW+ + G P N
Sbjct: 7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
Query: 109 YVAPAK 114
YVA
Sbjct: 67 YVAEDS 72
Score = 47.8 bits (114), Expect = 2e-08
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-------GRTGLFPASF 165
F + Y + +L R GD + V +GW+ G P+++
Sbjct: 9 YFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 66.0 bits (162), Expect = 2e-15
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
V + A+Y ++P+ DEL G + +T+ W+KGTS+ R+G+ P NYV
Sbjct: 3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYV 55
Score = 59.5 bits (145), Expect = 6e-13
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
FR + + P + EL GD+IY+ D W+KGT + GRTGL P++++ +
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 57
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 67.1 bits (164), Expect = 2e-15
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ Y PQ DDELEL+ G + V ++GW++G ++G+FP N++
Sbjct: 18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG--KTGMFPSNFI 70
Score = 64.4 bits (157), Expect = 2e-14
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ RC V Y P ++ ELEL+VGD+I V + ++GW++G L G+TG+FP++F
Sbjct: 15 ERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNF 69
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 66.2 bits (162), Expect = 2e-15
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 107 GNYVAPAKFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPAS 164
G+++ K + I P+ +++ L GD+I + + DGW G + G FP+S
Sbjct: 1 GSHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSS 60
Query: 165 FMK 167
+ K
Sbjct: 61 YTK 63
Score = 57.7 bits (140), Expect = 3e-12
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 61 AIYPYKP-QKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAP 112
I+P+ L +G V T+ +DGW G ++ G FP +Y
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 66.7 bits (163), Expect = 2e-15
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 99 TQRSGVFPGNYVAPAKFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTG 156
+ SG P P + I P + + L L VGD++ V + +G ++G + G
Sbjct: 3 SGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--G 60
Query: 157 RTGLFPASFMK 167
R GLFP + +K
Sbjct: 61 RKGLFPFTHVK 71
Score = 56.3 bits (136), Expect = 2e-11
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
S L + + I L L G + VT +G ++G R
Sbjct: 4 GSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--R 61
Query: 102 SGVFPGNYV 110
G+FP +V
Sbjct: 62 KGLFPFTHV 70
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 65.7 bits (161), Expect = 2e-15
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 57 PEY-IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
P Y A++ + PQ+D EL RRG V + W+KG ++G+FP NYV
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG--QTGMFPRNYVTA 56
Score = 57.2 bits (139), Expect = 5e-12
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
P + + + P + EL R GD I+V D W+KG G+TG+FP ++
Sbjct: 1 GPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNY 53
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 65.7 bits (161), Expect = 3e-15
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
Y+A+Y + PQ++++LE+R G + T+ E + W+KG Q R G FP N+V
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQD--RIGFFPANFVQR 61
Score = 58.0 bits (141), Expect = 3e-12
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ P +LE+R GD+I + + ++ W+KG +Q R G FPA+F++
Sbjct: 16 FVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFVQ 60
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 65.7 bits (161), Expect = 3e-15
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
+ + ++ Q EL L++G + + + W +G R G+FP NYV
Sbjct: 1 MKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHG--RLGIFPANYVE---- 54
Query: 116 RCIVPYPPNSE 126
++P +
Sbjct: 55 --VLPLEHHHH 63
Score = 62.2 bits (152), Expect = 6e-14
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
R + S EL L+ GD++Y+HK+ D W +G GR G+FPA++
Sbjct: 3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANY 52
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 65.7 bits (161), Expect = 3e-15
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYVAPAK 114
E IA Y + + +L +G V T+ +D W+K + R G+ P NYV +
Sbjct: 11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKA-KNKVGREGIIPANYVQKRE 69
Score = 48.0 bits (115), Expect = 2e-08
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMK 167
P+ CI + +E +L GD++ + D WYK + GR G+ PA++++
Sbjct: 8 WPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQ 66
Query: 168 QSD 170
+ +
Sbjct: 67 KRE 69
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 66.4 bits (162), Expect = 3e-15
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYV 110
P + A++ Y+ D+EL LRRG V + +GW+ G R GVFP NYV
Sbjct: 29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPS-GRVGVFPSNYV 87
Query: 111 AP 112
AP
Sbjct: 88 AP 89
Score = 53.3 bits (128), Expect = 3e-10
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPA 163
PA Y + EL LR GD + V + D+GW+ G L GR G+FP+
Sbjct: 26 TPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPS-GRVGVFPS 84
Query: 164 SF 165
++
Sbjct: 85 NY 86
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 65.3 bits (160), Expect = 3e-15
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
I Y + + DEL ++ G + ++ W+ + +SG+ P ++ P
Sbjct: 4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
Score = 53.7 bits (130), Expect = 9e-11
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F
Sbjct: 4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQF 56
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 65.8 bits (161), Expect = 3e-15
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A+Y YK ++ DEL RG++ + GW+KG T+ FP NYV
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNYVED 62
Score = 55.7 bits (135), Expect = 2e-11
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
Y EL G LI+ K GW+KG T FP+++
Sbjct: 15 DYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNY 59
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 66.3 bits (162), Expect = 4e-15
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
E +A Y +K + EL R+G + + + W++G T R G+FP +YV
Sbjct: 14 VLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 71
Score = 64.0 bits (156), Expect = 3e-14
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + E EL R G+ I + +K ++ WY+G + TGR G+FPAS+
Sbjct: 26 FKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 64.9 bits (159), Expect = 4e-15
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
I + Y+ Q DDEL + G + T + GW++G R G+FP N+V
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNFV 53
Score = 58.7 bits (143), Expect = 1e-12
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
IV Y + EL + VG++I +K D GW++G + GR GLFP +F
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNF 52
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 65.4 bits (160), Expect = 4e-15
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ A + +K +DEL + +G + VT + GW++GT R+G FP NYV
Sbjct: 7 GSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYV 62
Score = 62.3 bits (152), Expect = 8e-14
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + +E EL + GD+IYV + + GW++GTL GRTG FP+++
Sbjct: 7 GSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNY 61
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 70.4 bits (171), Expect = 5e-15
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 8/165 (4%)
Query: 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQ 68
L E + + LP T K + E+R P ++ +++ +
Sbjct: 71 LEERFGPDSKSSALAXTLP---TLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLM 127
Query: 69 KDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP---AKFRCIVPYPPNS 125
+D S Y + Q R +S GN V + + + NS
Sbjct: 128 DEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNS 187
Query: 126 EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ EL + GD+I++ + + W +GT++ G TG+FP SF+K
Sbjct: 188 KLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVKILK 230
Score = 58.9 bits (141), Expect = 6e-11
Identities = 27/181 (14%), Positives = 44/181 (24%), Gaps = 47/181 (25%)
Query: 27 PCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER 86
Q + V S P A++ + EL + G V + R
Sbjct: 145 VPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSR 204
Query: 87 CQDGWFKGTSQRTQRSGVFPGNYVAPAK-------------------------------- 114
W +GT + +G+FP ++V K
Sbjct: 205 INKDWLEGTVRG--ATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEED 262
Query: 115 ----------FRCIVPYPPNSEYELELR--VGDLIYVHKKRDDGWYKGTLQRT-GRTGLF 161
+ L R GDL+ + D + + LF
Sbjct: 263 LSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLF 322
Query: 162 P 162
P
Sbjct: 323 P 323
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 64.9 bits (159), Expect = 5e-15
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A + ++ +DEL +G V VT + GW++GT R+G FP NYV
Sbjct: 5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVRE 58
Score = 61.9 bits (151), Expect = 8e-14
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
P + +E EL GD+I+V + + GW++GT GRTG FP+++
Sbjct: 1 GPLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNY 55
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 65.0 bits (159), Expect = 6e-15
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
EYIA+YPY + +L G VT++ W+ G+ RSG+FP NYV P
Sbjct: 8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGD--RSGIFPSNYVKPKD 63
Score = 52.7 bits (127), Expect = 3e-10
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
++ + PY +L G+ I V +K D W+ G++ R+G+FP++++K D
Sbjct: 7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVKPKD 63
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 65.1 bits (159), Expect = 6e-15
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ A+Y ++ ++DDEL L +G + + E+ ++GW+ G+ + G FP YV
Sbjct: 4 GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYV 59
Score = 60.8 bits (148), Expect = 3e-13
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ C + + EL L GD++ +H+K+++GW+ G+L G+ G FPA++
Sbjct: 4 GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAY 58
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 64.6 bits (158), Expect = 7e-15
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
T + +Y Y+ + EL +++G + T+ W+K R G P Y+
Sbjct: 3 ETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNG--RQGFVPAAYLKK 60
Score = 57.6 bits (140), Expect = 3e-12
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 112 PAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQS 169
K +V Y S EL ++ GD++ + + W+K + GR G PA+++K+
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLKKL 61
Query: 170 D 170
D
Sbjct: 62 D 62
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 64.7 bits (158), Expect = 9e-15
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+A+Y Y+ DDE+ + T E DGW++G + R G+FP NYV
Sbjct: 18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG--RYGLFPANYV 69
Score = 57.4 bits (139), Expect = 7e-12
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 106 PGNYVAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
Y + Y + E+ D+I + DDGW++G + GR GLFPA
Sbjct: 9 YDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPA 66
Query: 164 SF 165
++
Sbjct: 67 NY 68
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 64.3 bits (157), Expect = 1e-14
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 111 APAKFRCIVPYPP-NSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ K + I P+ N++ L GD++ + + DGW G T G FP+S+ K
Sbjct: 6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64
Score = 62.8 bits (153), Expect = 4e-14
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 61 AIYPYKPQKD-DELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
I+P+ + L +G V T+ +DGW G T+ G FP +Y
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 64.3 bits (157), Expect = 1e-14
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYVAPAKFRCI 118
IY + DDEL G V VT W+ G + + +R GVFP ++V +
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI-----L 68
Query: 119 VPYPPNS 125
P+S
Sbjct: 69 SDSGPSS 75
Score = 57.3 bits (139), Expect = 6e-12
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASF 165
R +++ EL G++I V + D W+ G ++ + R G+FP SF
Sbjct: 7 GNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 64.2 bits (157), Expect = 1e-14
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A+Y ++ + +L L RG Y + E+ W++ + G P NYV K
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK 59
Score = 47.6 bits (114), Expect = 3e-08
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ ++L L G + +K D W++ + G G P+++
Sbjct: 10 DFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNY 54
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 63.8 bits (156), Expect = 1e-14
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPA 113
+ A++ Y+ + ++LE + G + V + + W +G S+ + G+FP +V +
Sbjct: 6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKG--KVGIFPKVFVEDS 60
Score = 61.1 bits (149), Expect = 2e-13
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
Y +LE + GD+I V K ++ W +G + G+ G+FP F++ S
Sbjct: 13 SYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA 61
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 63.9 bits (156), Expect = 1e-14
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
P +A+Y Y + DEL + RG + V + + W+ G+ + Q G FP N+VA
Sbjct: 6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQE-GYFPANHVAS 61
Score = 54.7 bits (132), Expect = 5e-11
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ Y N EL + GD+I V K ++ W+ G++ + G+ G FPA+
Sbjct: 8 TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANH 58
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 64.3 bits (157), Expect = 1e-14
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
SH T +A+Y Y+ + E+ +++G + T+ W+K R
Sbjct: 3 GSHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVND--R 60
Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYE 128
G P YV + + ++E
Sbjct: 61 QGFVPAAYVKK-----LAAAWSHPQFE 82
Score = 57.8 bits (140), Expect = 5e-12
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 93 KGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 152
+G+ G + A + Y S E+ ++ GD++ + + W+K +
Sbjct: 2 RGSHHHHHHGSDETGKELVLALY----DYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 57
Query: 153 QRTGRTGLFPASF 165
R G PA++
Sbjct: 58 --NDRQGFVPAAY 68
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 63.8 bits (156), Expect = 2e-14
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
IA+Y Y+ DDE+ + T E DGW++G + R G+FP NY
Sbjct: 3 LGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG--RYGLFPANY 60
Query: 110 V 110
V
Sbjct: 61 V 61
Score = 56.1 bits (136), Expect = 1e-11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
Y + E+ D+I + DDGW++G + GR GLFPA++
Sbjct: 18 YQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANY 60
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 63.9 bits (156), Expect = 2e-14
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
SS ++ R P IA+Y Y+ EL LRR Y + + + W++ R
Sbjct: 5 SSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-RNGH 63
Query: 102 SGVFPGNYVAPAK 114
G P +Y+
Sbjct: 64 EGYVPSSYLVEKS 76
Score = 47.4 bits (113), Expect = 5e-08
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
G+S + P + Y N EL LR + + + W++
Sbjct: 1 GSSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD- 59
Query: 154 RTGRTGLFPASF 165
R G G P+S+
Sbjct: 60 RNGHEGYVPSSY 71
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 63.4 bits (155), Expect = 2e-14
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A + ++ +DEL +G V VT + GW++GT R+G FP NYV
Sbjct: 3 ANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNG--RTGWFPSNYVRE 60
Score = 62.6 bits (153), Expect = 4e-14
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
A ++ + +E EL GD+I+V + + GW++GT GRTG FP+++
Sbjct: 3 ANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNY 57
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 63.4 bits (155), Expect = 2e-14
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A + +K Q EL L++G + + ++ W++G R G+FP Y+
Sbjct: 8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHG--RVGIFPRTYI 59
Score = 59.9 bits (146), Expect = 5e-13
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + EL L+ GD++Y++K+ D WY+G GR G+FP ++
Sbjct: 16 FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTY 58
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 62.9 bits (154), Expect = 3e-14
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A++ + PQ+ EL +RG V T+ + W++G R G+FP NYV P
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNN--RRGIFPSNYVCP 56
Score = 57.2 bits (139), Expect = 4e-12
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ P EL + GD+I + K D W++G L R G+FP++++ +
Sbjct: 10 DFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVCPYN 58
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 63.0 bits (154), Expect = 3e-14
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y ++ +D+EL + G + TV + W++G + R +G+FP N+V
Sbjct: 5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHR--GTGLFPSNFV 57
Score = 56.1 bits (136), Expect = 1e-11
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + EL + G+LI V D W++G TGLFP++F
Sbjct: 14 FEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNF 56
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 63.6 bits (155), Expect = 3e-14
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ A+Y ++ +D+EL + G + V + W+KG + R G+FP N+V
Sbjct: 14 NKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHR--GIGLFPSNFVTT 71
Score = 58.6 bits (142), Expect = 3e-12
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
G+S + R + + + EL + G++I V D W+KG
Sbjct: 1 GSSGSSGSEIQLNNKVARKV--RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH 58
Query: 154 RTGRTGLFPASF 165
GLFP++F
Sbjct: 59 --RGIGLFPSNF 68
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 63.4 bits (155), Expect = 3e-14
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
P P A+Y ++P+ D EL R G + T+T + + W++G +SG FP +YV
Sbjct: 10 PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFFPLSYV-- 65
Query: 113 AKFRCIVPYP 122
+ +VP P
Sbjct: 66 ---QVLVPLP 72
Score = 59.6 bits (145), Expect = 7e-13
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ P ++ EL R GDLI + + D+ WY+G L G++G FP S+
Sbjct: 22 FEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFFPLSY 64
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 63.3 bits (154), Expect = 3e-14
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
Y+ Y+ +D E+ G V E+ + GW+ G P +Y+ +
Sbjct: 10 SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGE--LEGWAPSHYLVLDE 64
Score = 55.6 bits (134), Expect = 3e-11
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ Y + E+ G + V +K++ GW+ G P+ ++ +
Sbjct: 7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG--ELEGWAPSHYLVLDE 64
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 62.5 bits (153), Expect = 4e-14
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
V A+Y ++ ++DEL R G V V + W+ G + G+FP NYVAP
Sbjct: 1 VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHN--KLGLFPANYVAP 55
Score = 55.2 bits (134), Expect = 3e-11
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
R + + E EL R G+++ V + W+ G L + GLFPA++
Sbjct: 5 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANY 52
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 63.1 bits (154), Expect = 4e-14
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
PTF A++ YK Q++DEL + ++ E+ + GW++G ++ FP NYV
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVEE 61
Score = 52.3 bits (126), Expect = 5e-10
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 112 PAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASF 165
K Y E EL +I +K++ GW++G G+ L FP+++
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG--GKKQLWFPSNY 58
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 62.6 bits (153), Expect = 4e-14
Identities = 9/53 (16%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A++ + +++L ++G + + ++ ++ W+ +R G+ P YV
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 58
Score = 52.6 bits (127), Expect = 3e-10
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
R + + N E +L + GD++ + K ++ W+ G+ G+ P +
Sbjct: 5 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPY 55
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 62.7 bits (153), Expect = 5e-14
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAPA 113
+A Y + + EL LR G V + R GW+KG + R G FP YV
Sbjct: 7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFPSTYVEEE 64
Query: 114 KFRCIVPYPPNS 125
+ P+S
Sbjct: 65 G----IQSGPSS 72
Score = 55.4 bits (134), Expect = 3e-11
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
+ + + EL LR GD++ ++ + D GW+KG GR G FP+++
Sbjct: 4 GSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFPSTY 60
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 62.7 bits (153), Expect = 5e-14
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTV-TERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
I Y + + DEL ++ G + ++ W+ + +SG+ P ++ P +
Sbjct: 7 KRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65
Score = 53.0 bits (128), Expect = 2e-10
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F
Sbjct: 8 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQF 60
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 62.8 bits (153), Expect = 5e-14
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 106 PGNYVAPAKFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 163
G+ + R + P+ L+L+ GD+I + K G + G L + G F
Sbjct: 3 SGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFKF 60
Query: 164 SF 165
+
Sbjct: 61 IY 62
Score = 58.2 bits (141), Expect = 2e-12
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ P D L+L++G + + + G + G + G F YV
Sbjct: 15 HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFKFIYV 63
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 62.7 bits (153), Expect = 6e-14
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
E IA + Y + EL ++G+ + +R D W++G G+ P Y+
Sbjct: 9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNG--IDGLIPHQYI 61
Score = 58.1 bits (141), Expect = 3e-12
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 161
SG A AKF Y + EL + G + ++++ D W++G G GL
Sbjct: 3 SGSSGEPIEAIAKF----DYVGRTARELSFKKGASLLLYQRASDDWWEGRHN--GIDGLI 56
Query: 162 PASF 165
P +
Sbjct: 57 PHQY 60
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 64.3 bits (156), Expect = 6e-14
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVA 111
P A Y + + EL L+ G + + + Q GW++G R G FP NYV
Sbjct: 2 PGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYG--RIGWFPSNYVE 59
Query: 112 P 112
Sbjct: 60 E 60
Score = 54.7 bits (131), Expect = 3e-10
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 111 APAKF-RCIV--PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFM 166
P F + EL L+ GD+I + +KK GW++G + GR G FP++++
Sbjct: 1 GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPSNYV 58
Query: 167 KQ 168
++
Sbjct: 59 EE 60
Score = 25.8 bits (56), Expect = 6.4
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGS-VYTVTER 86
+ Y D E + +TVTE
Sbjct: 103 EKVFKQYANDNGVDGEWTYDDATKTFTVTEH 133
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 62.2 bits (152), Expect = 6e-14
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYV 110
+YI Y Y DDEL +R G + ++ Q +GW +G R G+FP N+V
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFV 54
Score = 53.7 bits (130), Expect = 9e-11
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ Y + EL +RVG++I V K +++GW +G L GR G+FP +F+K
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVK 55
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 62.3 bits (152), Expect = 7e-14
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ AIY ++ +D+EL + G + TV + W+KG + + G+FP N+V
Sbjct: 17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQ--GIGLFPSNFV 69
Score = 56.9 bits (138), Expect = 9e-12
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
K R I + + EL + G++I V D W+KG GLFP++F
Sbjct: 19 KVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--QGIGLFPSNF 68
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 62.3 bits (152), Expect = 7e-14
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A+ ++ DDEL R+ + T+ + + + G G FP +V
Sbjct: 7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNG--LRGWFPAKFV 59
Score = 57.7 bits (140), Expect = 5e-12
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + + EL R D+I + ++D+ + G L G G FPA F
Sbjct: 15 DFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAKF 58
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 62.3 bits (152), Expect = 7e-14
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
+A+Y Y+ + E+ +++G + T+ W+K R G P YV
Sbjct: 5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVND--RQGFVPAAYVKK--- 59
Query: 116 RCIVPYPPNSEYEL 129
+ P S L
Sbjct: 60 --LDPAQSASRENL 71
Score = 57.3 bits (139), Expect = 6e-12
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 110 VAPAKFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ K + Y S E+ ++ GD++ + + W+K + R G PA++
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAY 56
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 62.0 bits (151), Expect = 8e-14
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 112 PAKFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
P + I P + + L L VGD++ V + +G ++G + GR GLFP + +K
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 56
Score = 51.6 bits (124), Expect = 8e-10
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
I L L G + VT +G ++G R G+FP +V
Sbjct: 7 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--RKGLFPFTHV 55
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 62.0 bits (151), Expect = 8e-14
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ------RSGVFPGNYVAP 112
+A+Y Y+ + E+ +++G + T+ W+K + T R G P YV
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63
Query: 113 A 113
Sbjct: 64 L 64
Score = 50.8 bits (122), Expect = 2e-09
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT------GRTGLFPASFMKQSD 170
Y S E+ ++ GD++ + + W+K ++ T R G PA+++K+ D
Sbjct: 10 YQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 61.4 bits (150), Expect = 9e-14
Identities = 9/53 (16%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
A++ + +++L ++G + + ++ ++ W+ +R G+ P YV
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 56
Score = 54.5 bits (132), Expect = 5e-11
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ N E +L + GD++ + K ++ W+ G+ G+ P ++++
Sbjct: 10 FNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEK 56
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 62.0 bits (151), Expect = 9e-14
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+A+Y Y+ + E+ +++G + T+ W+K R G P YV
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVND--RQGFVPAAYVKK 56
Score = 56.6 bits (137), Expect = 1e-11
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
Y S E+ ++ GD++ + + W+K + R G PA++
Sbjct: 10 DYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAY 53
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 61.9 bits (151), Expect = 9e-14
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
P A+ Y+ + +L+ +G V + + + W++G SG+FP + V
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEING--VSGIFPASSV 59
Score = 59.5 bits (145), Expect = 7e-13
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
Y + +L+ GD+I + ++ D+ WY+G + G +G+FPAS
Sbjct: 15 NYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN--GVSGIFPASS 58
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 62.0 bits (151), Expect = 1e-13
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ A++ + + EL + G V V + W+ G G FP ++V
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDD--EEGWFPASFVRL 64
Score = 56.6 bits (137), Expect = 1e-11
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + EL + GD+I V + W+ G + G FPASF++
Sbjct: 18 DHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFPASFVR 63
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 61.0 bits (149), Expect = 1e-13
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ A+Y Y Q DEL + G V ++ GW++G + G P NYV
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNG--KRGWVPANYVQD 57
Score = 56.8 bits (138), Expect = 6e-12
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 106 PGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
PG V + + Y + EL + GD I VH+K GW++G L G+ G PA++
Sbjct: 2 PGIQV-----KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELN--GKRGWVPANY 54
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 61.1 bits (149), Expect = 1e-13
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 54 TFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
TF A++ YK Q++DEL + ++ E+ GW++G ++ FP NYV
Sbjct: 1 TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYVEE 58
Score = 50.7 bits (122), Expect = 1e-09
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASF 165
Y E EL +I +K+D GW++G G+ L FP+++
Sbjct: 11 DYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYG--GKKQLWFPSNY 55
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 62.6 bits (152), Expect = 2e-13
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYV 110
+ +Y +K ++DDEL++ G ++ WF R G+ P +YV
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58
Score = 54.9 bits (132), Expect = 1e-10
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPASFMKQSD 170
+ + EL++ G+ + + D W+ + R G GL P S+++ D
Sbjct: 12 FKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID 62
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 61.1 bits (149), Expect = 2e-13
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDG-WFKGTSQRTQRSGVFPGNYVAPAK 114
++A+Y + D+ L + +G V +G W + + G P Y+ P
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITPVN 62
Score = 45.3 bits (108), Expect = 2e-07
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASF 165
P F + + + + L + G+ + V +G W + G P+++
Sbjct: 5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAY 57
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 61.1 bits (149), Expect = 2e-13
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFR 116
P +Y ++P+ EL + G + T+T + + W++G SG FP NYV
Sbjct: 4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHG--ESGFFPINYV-----E 56
Query: 117 CIVPYPPNSEY 127
IVP + +
Sbjct: 57 VIVPLEHHHHH 67
Score = 58.4 bits (142), Expect = 2e-12
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ P ++ EL + GD+I + + D+ WY+G + G +G FP ++
Sbjct: 11 DFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINY 54
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 61.2 bits (149), Expect = 2e-13
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 109 YVAPAKFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
P R I PN+ + L L VG+L+ V K G ++G G+ G FP +
Sbjct: 3 QNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTH 59
Score = 52.3 bits (126), Expect = 3e-10
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 61 AIYPYKPQK--DDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
I P L L G + VT+ G ++G + G FP +V
Sbjct: 11 VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNG--KRGHFPFTHV 60
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 61.1 bits (149), Expect = 2e-13
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
+ I+PY+ Q DDEL ++ G + T+ + GW++G R GVFP N+V
Sbjct: 4 GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 61
Score = 54.6 bits (132), Expect = 5e-11
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
+ C V PY ++ EL ++ GD++ + K D GW++G L GR G+FP +F
Sbjct: 4 GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNF 60
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 61.1 bits (149), Expect = 2e-13
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFR 116
P A+Y ++P+ + EL + G + T+T + + W++G SG FP NYV
Sbjct: 8 PCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHG--HSGFFPINYV-----E 60
Query: 117 CIVPYPP 123
+V P
Sbjct: 61 ILVALPH 67
Score = 58.8 bits (143), Expect = 1e-12
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ P +E EL + GD+I + + D+ WY+G L G +G FP ++
Sbjct: 16 FEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINY 58
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 60.7 bits (148), Expect = 2e-13
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 53 PTFVPEY-IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
P PE+ IA + Y + EL ++G+ + R + W++G G+ P Y+
Sbjct: 2 PLGSPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQYI 58
Score = 56.4 bits (137), Expect = 1e-11
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
Y S EL + G + ++ + + W++G G GL P ++
Sbjct: 15 YVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQYIV 59
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 60.8 bits (148), Expect = 2e-13
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
V E +A + Y + EL RRG V + ER W++G G+ P Y+
Sbjct: 10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNG--MRGLIPHKYITL 64
Score = 58.1 bits (141), Expect = 3e-12
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
Y + EL R GD++ +H++ W++G G GL P +
Sbjct: 18 AYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIPHKY 61
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 61.3 bits (149), Expect = 2e-13
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRT 99
S L + + +YP+ ++EL +G V E+ W+K + R
Sbjct: 3 SGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARG 62
Query: 100 QRSGVFPGNYVAPAK 114
Q G+ P NYV
Sbjct: 63 Q-VGLVPKNYVVVLS 76
Score = 45.9 bits (109), Expect = 2e-07
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGT 151
G+S + S + + + P+ +E EL G+ + V +K D W+K
Sbjct: 1 GSSGSSGLSNGQGSRVLH--VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCK 58
Query: 152 LQRTGRTGLFPASF 165
R G+ GL P ++
Sbjct: 59 NAR-GQVGLVPKNY 71
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 61.7 bits (150), Expect = 3e-13
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQ-RTQRSGVFPGNYV 110
I +Y +K +K DEL G + WF R G+ P +V
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60
Score = 56.7 bits (137), Expect = 3e-11
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASF 165
+ EL VG+ +++ + W+ R G GL P F
Sbjct: 14 FKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGF 59
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 60.3 bits (147), Expect = 3e-13
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAP 112
++PY +DEL R G + + + + GW+KG + GVFP N+
Sbjct: 6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVFPDNFAVQ 62
Score = 56.9 bits (138), Expect = 8e-12
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFM 166
AK C PY +E EL R G++I++ K + GW+KG L G+ G+FP +F
Sbjct: 3 MGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVFPDNFA 60
Query: 167 KQ 168
Q
Sbjct: 61 VQ 62
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 60.3 bits (147), Expect = 3e-13
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
P+ +A+Y + ++ +L R+G V T+ ++ Q+ W+ G R G+FP NYV
Sbjct: 4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYV 57
Score = 50.2 bits (121), Expect = 2e-09
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASF 165
+ +L R GD+I + KK D + W+ G + GR G+FPA++
Sbjct: 11 SFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANY 56
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 60.3 bits (147), Expect = 3e-13
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ + +Y ++ + EL + +G V + + W RSG P N + P
Sbjct: 4 GSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNE--AGRSGYIPSNILEP 61
Score = 48.0 bits (115), Expect = 2e-08
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
K + + + + EL + G+ + V W GR+G P++
Sbjct: 9 KMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKN--EAGRSGYIPSNI 58
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 60.4 bits (147), Expect = 3e-13
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFPGNYV 110
V A+Y Y+ Q DDEL G++ + + DG+++G R GVFP V
Sbjct: 8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNG--RIGVFPSVLV 63
Score = 55.0 bits (133), Expect = 4e-11
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASF 165
+ Y ++ EL G +I + K DDG+++G GR G+FP+
Sbjct: 5 SSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN--GRIGVFPSVL 62
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 60.5 bits (147), Expect = 4e-13
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAP 112
E A+Y ++ Q+ +L + G TV + W++G + ++G+FP NYV
Sbjct: 17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRG--QTGIFPANYVTM 73
Score = 52.4 bits (126), Expect = 5e-10
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD--GWYKGT 151
G+S + + V + + +L + GD I V K D W++G
Sbjct: 4 GSSGHERVGNLNQPIEV-----TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK 58
Query: 152 LQRTGRTGLFPASF 165
L+ G+TG+FPA++
Sbjct: 59 LR--GQTGIFPANY 70
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 60.4 bits (147), Expect = 4e-13
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
+ A+ + +KD+ L + + TV E+ Q+ W+ G G FP +YV
Sbjct: 7 GVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHG--GRGWFPKSYV 61
Score = 52.7 bits (127), Expect = 3e-10
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ + + + L D+I V ++ + W+ G + G G FP S++K
Sbjct: 14 QALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFPKSYVK 62
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 60.0 bits (146), Expect = 5e-13
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+Y + + +EL + + V V E + W + R+ ++G P N + A
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNILGEAS 63
Score = 48.8 bits (117), Expect = 8e-09
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + + + EL + +++ V + W + R+G+ G P +
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNI 58
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 60.0 bits (146), Expect = 6e-13
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
T + A+Y K + D EL G+V+ Q+ GW +GT ++G+ P NYV
Sbjct: 7 GTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNG--KTGLIPENYV 63
Score = 53.8 bits (130), Expect = 1e-10
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 116 RCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + + EL G + VH ++ GW +GTL G+TGL P ++
Sbjct: 14 KALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENY 62
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 59.4 bits (145), Expect = 7e-13
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ NS+ EL + GD+I++ + + W +GT++ G TG+FP SF
Sbjct: 13 FTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSF 55
Score = 58.3 bits (142), Expect = 2e-12
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
A++ + EL + G V + R W +GT + +G+FP ++V
Sbjct: 5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG--ATGIFPLSFV 56
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 59.2 bits (144), Expect = 1e-12
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKF 115
P A++ + EL + G V + R W +GT + +G+FP ++V
Sbjct: 18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG--ATGIFPLSFV----- 70
Query: 116 RCIVPYPP 123
+ + +P
Sbjct: 71 KILKDFPE 78
Score = 59.2 bits (144), Expect = 1e-12
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ NS+ EL + GD+I++ + + W +GT++ G TG+FP SF+K
Sbjct: 26 DFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 71
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 60.1 bits (145), Expect = 1e-12
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQR-TQRSGVFPGNYV 110
+AIY ++ +L L+ G V + E C W++G + G+FP +++
Sbjct: 63 VAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFI 113
Score = 58.2 bits (140), Expect = 9e-12
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFMK 167
I + + +L L++GD++ + + WY+G L + G+FP SF+
Sbjct: 63 VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 114
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 58.9 bits (143), Expect = 1e-12
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
IA+Y Y+ EL LR Y + + + W++ + G P +Y+
Sbjct: 20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHE-GYAPSSYLV 74
Score = 45.4 bits (108), Expect = 2e-07
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ Y N EL LR + Y+ + W++ + G G P+S+
Sbjct: 22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSY 72
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 58.4 bits (142), Expect = 2e-12
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 57 PEY-IAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
+Y I+PY+ Q DDEL ++ G + T+ + GW++G R GVFP N+V
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 56
Score = 55.0 bits (133), Expect = 4e-11
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
A + I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +F
Sbjct: 1 ASDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNF 55
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 58.4 bits (142), Expect = 2e-12
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERCQ---DGWFKGTSQRTQRSGVFPGNYVAP 112
A+Y P DEL RG + T+ E+ +GW+K R G+ P N +
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLAPANRLQI 64
Score = 51.5 bits (124), Expect = 8e-10
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFMK 167
P+ EL GD++ + ++ +GW+K L GR GL PA+ ++
Sbjct: 15 DNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLAPANRLQ 63
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 58.0 bits (141), Expect = 2e-12
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYV 110
A+Y Y Q+ DEL + G T + GW +G Q G++P NYV
Sbjct: 4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQ-LGLYPANYV 57
Score = 52.6 bits (127), Expect = 2e-10
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
Y + EL + GD + + D GW +G L G+ GL+PA++
Sbjct: 12 YDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS-GQLGLYPANY 56
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 57.9 bits (141), Expect = 2e-12
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYV 110
E +Y Y + DDE+ + G ++ R GW K + T +G+ P Y+
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
Score = 51.8 bits (125), Expect = 5e-10
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
+ + + Y + E+ + GD I + + GW K TG TGL P ++
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTY 55
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 57.5 bits (140), Expect = 2e-12
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 61 AIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYV 110
AIY Y+ Q DDE+ + G + TV GW G G+FP +Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYC 53
Score = 54.8 bits (133), Expect = 3e-11
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
I Y + E+ + GD+I V + D GW G G GLFP S+ K
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYCK 54
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 58.1 bits (141), Expect = 3e-12
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
I+PY+ Q DDEL ++ G + T+ + GW++G R GVFP N+V
Sbjct: 9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNG--RRGVFPDNFV 63
Score = 55.4 bits (134), Expect = 4e-11
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFM 166
+K C V PY ++ EL ++ GD++ + K D GW++G L GR G+FP +F+
Sbjct: 6 TKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 63
Query: 167 K 167
K
Sbjct: 64 K 64
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 58.1 bits (141), Expect = 3e-12
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERC--QDGWFKGTSQRTQRSGVFPGNYVAP 112
+ +YP+ ++EL +G V E+ W+K + R Q G+ P NYV
Sbjct: 6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVVV 63
Score = 45.0 bits (107), Expect = 3e-07
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 120 PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
P+ +E EL G+ + V +K D W+K R G+ GL P ++
Sbjct: 14 PFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNY 60
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 58.6 bits (142), Expect = 3e-12
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYVAPA 113
IA+ Y L RG + + + GW G++ RSG+FP + V PA
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGG--RSGLFPADIVQPA 65
Score = 53.2 bits (128), Expect = 3e-10
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTG 159
SG YV + Y ++ L GDLI + + GW G+ GR+G
Sbjct: 3 SGSSGSGYV-----IALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--GRSG 55
Query: 160 LFPASF 165
LFPA
Sbjct: 56 LFPADI 61
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 58.7 bits (142), Expect = 3e-12
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER--CQDGWFKGTSQRTQRSGVFPGNYV 110
Y A+YP++ + DE+ G + V E+ + GW G+ Q G FP NYV
Sbjct: 5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQG--NFGWFPCNYV 59
Score = 56.0 bits (135), Expect = 3e-11
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASF 165
+ P+ + E+ GD+I V +K + GW G+ Q G G FP ++
Sbjct: 2 SSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNY 58
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 57.9 bits (140), Expect = 4e-12
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 53 PTFVPEYIAIYPYKPQKD-DELELRRGSVYTVTERCQDGWFKG----TSQRTQRSGVFPG 107
P + A+ + D L +R G V TV E+ DG +KG + + T R G FP
Sbjct: 15 PRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPP 74
Query: 108 NYV 110
V
Sbjct: 75 GIV 77
Score = 54.1 bits (130), Expect = 1e-10
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 96 SQRTQRSGVFPGNYVAPAKFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ- 153
SG+ P + K R + + + L +R GD+I V ++ DG +KG +
Sbjct: 5 HHHHHSSGLVPRGSL---KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHE 61
Query: 154 ---RTGRTGLFPASF 165
T R G FP
Sbjct: 62 SQRGTDRIGYFPPGI 76
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 57.4 bits (139), Expect = 6e-12
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 123 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
+ L LR GD++ V+ D G+Y G L G GL PA
Sbjct: 25 GQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLVPAHL 66
Score = 52.0 bits (125), Expect = 7e-10
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 59 YIAIYPYKPQK-------DDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGNYV 110
IA Y P L LR G V V G++ G G+ P + +
Sbjct: 10 MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLVPAHLL 67
Query: 111 AP 112
Sbjct: 68 DH 69
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 57.4 bits (139), Expect = 6e-12
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC----QDGWFKGTSQRTQRSGVFPGN 108
Y A+Y +K + +EL + + E W+ + G P N
Sbjct: 10 AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNG--KKGYVPSN 67
Query: 109 YVAPAK 114
Y+ +
Sbjct: 68 YIRKTE 73
Score = 45.4 bits (108), Expect = 2e-07
Identities = 7/55 (12%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASFMKQSD 170
+ + EL + + + + +D W+ + G+ G P++++++++
Sbjct: 21 TFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKKGYVPSNYIRKTE 73
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 57.4 bits (139), Expect = 6e-12
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQ--DGWFKGTSQRTQRSGVFPGNYV 110
+ + +Y Y EL L V TV W G +R + G P Y+
Sbjct: 14 SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG--ERGNQKGKVPITYL 71
Score = 51.6 bits (124), Expect = 9e-10
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASF 165
+ + V Y + EL L ++I V D W G + G P ++
Sbjct: 14 SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG--NQKGKVPITY 70
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 56.9 bits (138), Expect = 9e-12
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVFPGNYV 110
E IA Y +K DDEL +RG + V D W+K + G P NY+
Sbjct: 9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNG--KDGFIPKNYI 62
Score = 51.5 bits (124), Expect = 1e-09
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 111 APAKFRCIV--PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASF 165
+ I + ++ EL + GD++ V +++ D WYK L G+ G P ++
Sbjct: 6 SVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGFIPKNY 61
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 57.0 bits (138), Expect = 9e-12
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVA 111
P F A+ Y L +R + T+T + ++ WF G + G FP ++V
Sbjct: 7 PEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFPVDHVE 64
Query: 112 PAKFRCIVPYP 122
P P
Sbjct: 65 ILLSDVPPPQP 75
Score = 52.8 bits (127), Expect = 4e-10
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFMK 167
R + Y + L + D+I + K + W+ G L G+ G FP ++
Sbjct: 14 RALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFPVDHVE 64
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 56.6 bits (137), Expect = 1e-11
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTER---CQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y + DEL R+G + TV E+ DGW+ + R G+ PGN +
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRL 58
Score = 50.4 bits (121), Expect = 3e-09
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQRTGRTGLFPASFMK 167
S EL R GD++ V ++ DGW+ +L GR G+ P + +K
Sbjct: 11 DNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLK 59
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 56.5 bits (137), Expect = 1e-11
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCI 118
IA + Y Q+D EL++++ + + + W++ + + +G P NYV
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANR-TGYVPSNYVERKL---- 60
Query: 119 VPYPPNSEY 127
+ +
Sbjct: 61 ---EHHHHH 66
Score = 41.1 bits (97), Expect = 6e-06
Identities = 8/54 (14%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
Y + EL+++ + +++ W++ RTG P++++++
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVR-NAANRTGYVPSNYVER 58
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 56.5 bits (137), Expect = 1e-11
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A + Y Q++ EL++++ + + W++ + + +G P NYV
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNK-TGFVPSNYVERKN 63
Score = 41.9 bits (99), Expect = 4e-06
Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
Y E EL+++ + +++ W++ +TG P++++++ +
Sbjct: 9 VVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVR-NSMNKTGFVPSNYVERKN 63
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 57.2 bits (138), Expect = 1e-11
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 56 VPEYIAIYPYKPQK------DDELELRRGSVYTVT-ERCQDGWFKGTSQRTQRSGVFPGN 108
V +A Y Y P + EL L G V + +DG+++G QR G+ P N
Sbjct: 17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQR-GLVPSN 75
Query: 109 YVAPAK 114
+V +
Sbjct: 76 FVDFVQ 81
Score = 56.8 bits (137), Expect = 1e-11
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 114 KFRCIVPYPP------NSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFM 166
Y P N E EL L G +YV+ D DG+Y+G L G+ GL P++F+
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL-LDGQRGLVPSNFV 77
Query: 167 KQ 168
Sbjct: 78 DF 79
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 59.7 bits (144), Expect = 1e-11
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 49 CPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGN 108
+ P A++ + PQ+D EL RRG V + W+KG ++G+FP N
Sbjct: 151 IEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG--QTGMFPRN 208
Query: 109 YVAP 112
YV P
Sbjct: 209 YVTP 212
Score = 56.6 bits (136), Expect = 2e-10
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRC 117
E IA Y +K DDEL +RG + V D + ++ + G P NY+
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWY-KAELNGKDGFIPKNYIEMKPHPW 60
Query: 118 IVPYPPNSEYELELR 132
P ++ E L
Sbjct: 61 FFGKIPRAKAEEMLS 75
Score = 53.1 bits (127), Expect = 3e-09
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 62 IYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFP---GNYVAPAKFRCI 118
+ +K +D + V + + + TS + P + +
Sbjct: 105 VQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAL 164
Query: 119 VPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ P + EL R GD I+V D W+KG G+TG+FP ++
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNY 209
Score = 44.3 bits (104), Expect = 4e-06
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFMKQSD 170
+ ++ EL + GD++ V + D WYK L G+ G P ++++
Sbjct: 8 DFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEMKP 57
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 56.7 bits (137), Expect = 2e-11
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 58 EYIAIYPYKPQKDDELELRRGSVYTVTERCQD----GWFKGTSQRTQRSGVFPGNYV 110
A Y + D+E+ R G + + + Q GW + Q +G+ P NYV
Sbjct: 19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL-DGQTTGLIPANYV 74
Score = 48.3 bits (115), Expect = 3e-08
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 107 GNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYKGTLQRTGRTGLFP 162
+ VA A++ + S+ E+ R GD++ + K GW +L TGL P
Sbjct: 16 DHVVARAEY----DFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL-DGQTTGLIP 70
Query: 163 ASFMK 167
A+++K
Sbjct: 71 ANYVK 75
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 55.8 bits (135), Expect = 2e-11
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
P + + Y ++ + EL +++ V V + + W+K Q G P N
Sbjct: 2 PLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQ-EGYVPYNI 59
Query: 110 VAPAK 114
+ P
Sbjct: 60 LTPYP 64
Score = 40.8 bits (96), Expect = 1e-05
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
C + + EL ++ D++ V W+K G+ G P +
Sbjct: 10 WVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRD-PAGQEGYVPYNI 59
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 55.9 bits (135), Expect = 3e-11
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 123 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
+ E EL GD+I V + D DG+Y G L G+ GL P++F
Sbjct: 25 VDVEAELTFCTGDIITVFGEIDEDGFYYGELN--GQKGLVPSNF 66
Score = 52.4 bits (126), Expect = 4e-10
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 56 VPEYIAIYPYKPQ-------KDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPG 107
+A+Y Y P+ + EL G + TV +DG++ G + G+ P
Sbjct: 7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE--LNGQKGLVPS 64
Query: 108 NYVAP 112
N++
Sbjct: 65 NFLEE 69
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 55.4 bits (134), Expect = 3e-11
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 53 PTFVPEYIAIYPYKPQKDD--ELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYV 110
F+ + A+YPY DD E+ + + V++ + W+K + G+ P NYV
Sbjct: 2 DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGET-GIIPSNYV 59
Query: 111 AP 112
Sbjct: 60 QL 61
Score = 46.2 bits (110), Expect = 1e-07
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 112 PAKFRCIVPYPPNSE--YELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
K + + PY + + YE+ +++ V + W+K G TG+ P+++
Sbjct: 5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRAN-GETGIIPSNY 58
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 55.4 bits (134), Expect = 3e-11
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNYV 110
+AIY ++ + + + G ++ E + DGW + + G P +Y+
Sbjct: 8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGG-EGYVPTSYL 61
Score = 45.7 bits (109), Expect = 1e-07
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 116 RCIV--PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
C+ + +SE + + G+ + + ++ DGW + + G G P S+
Sbjct: 9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSY 60
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 55.2 bits (133), Expect = 4e-11
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGW--FKGTSQRTQRSGVFPG 107
Y++I Y+ ++ + G V ER +GW + G P
Sbjct: 4 GSSGNLKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPS 62
Query: 108 NYVAPAK 114
NY+
Sbjct: 63 NYLEKKN 69
Score = 47.1 bits (112), Expect = 4e-08
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRTGLFPASFMKQSD 170
+ I Y + E + G + V ++ +GW+ + G P++++++ +
Sbjct: 13 YVSIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 69
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 54.7 bits (132), Expect = 4e-11
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP 57
L C C K+LPC HT C CLE ++CP C P
Sbjct: 5 QFLRCQQCQAEA-KCPKLLPCLHTLCSGCLE-----ASGMQCPICQAPWP 48
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 57.1 bits (137), Expect = 6e-11
Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 48 RCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPG 107
+ + + + +++ +L +G + + W++ + +G+ P
Sbjct: 110 LAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPA 168
Query: 108 NYVA 111
NYV
Sbjct: 169 NYVQ 172
Score = 55.2 bits (132), Expect = 3e-10
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 21/125 (16%)
Query: 63 YPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRS-------------------- 102
Y ++ DE + E +DG + +S
Sbjct: 49 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108
Query: 103 GVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 162
+ + E +L G+ + + K + W++ G TGL P
Sbjct: 109 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVP 167
Query: 163 ASFMK 167
A++++
Sbjct: 168 ANYVQ 172
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 54.8 bits (132), Expect = 9e-11
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 50 PECPTFVPEYIAIYPYKPQ-KDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSG 103
P P+ + A+Y + P+ + E+ L++G + + + W+K + + G
Sbjct: 8 PIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIG 66
Query: 104 VFPGNYVAPAK 114
P NY+ K
Sbjct: 67 YIPYNYIEIIK 77
Score = 49.1 bits (117), Expect = 1e-08
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 122 PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASF 165
P N E E+ L+ GDL+ + K+D W+K + G G P ++
Sbjct: 25 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNY 72
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 58.2 bits (141), Expect = 1e-10
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 55 FVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
V ++A+Y Y+ + + +L ++G + + W+ S T ++G P NYVAP+
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 36.3 bits (84), Expect = 0.003
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
Y +E +L + G+ + + + W+ TG+TG P++++ SD
Sbjct: 10 DYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 56.6 bits (136), Expect = 1e-10
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQ-RSGVFPGNYV--APAKFR 116
+AIY ++ +L L+ G V + E C W++G + + G+FP +++
Sbjct: 21 VAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKEVTVE 79
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 154
E+ L ++ + W + +
Sbjct: 80 KRRNTENIIPAEIPL-AQEVTTTLWEWGSIWKQLYVAS 116
Score = 53.6 bits (128), Expect = 1e-09
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASFMK 167
I + + +L L++GD++ + + WY+G L + G+FP SF+
Sbjct: 21 VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 72
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 54.5 bits (131), Expect = 1e-10
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 59 YIAIYPYKPQK--------DDELELRRGSVYTVTERCQ-DGWFKGTSQRTQRSGVFPGNY 109
++A++ Y P ++EL + G + V DG+++G + R G+ P N
Sbjct: 20 FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCA--RLGLIPCNM 77
Query: 110 VAPAK 114
V+ +
Sbjct: 78 VSEIQ 82
Score = 53.7 bits (129), Expect = 2e-10
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 165
P P +E EL + G +I V+ +D DG+Y+G R GL P +
Sbjct: 33 PNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET--CARLGLIPCNM 77
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 53.7 bits (129), Expect = 1e-10
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
E+ ++ GD++ + + W+K + R G PA+++K
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVK 44
Score = 47.1 bits (112), Expect = 5e-08
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 68 QKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
E+ +++G + T+ W+K R G P YV
Sbjct: 3 MGPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 45
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 53.5 bits (129), Expect = 2e-10
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ PY E+ +++G + T+ W+K + R G P YV
Sbjct: 4 PPLPPYSAG-GREVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVKK 53
Score = 52.8 bits (127), Expect = 3e-10
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 111 APAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
AP PY E+ ++ GD++ + + W+K + R G PA+++K
Sbjct: 3 APPLP----PYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVK 52
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 53.1 bits (128), Expect = 2e-10
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
E+ ++ GD++ + + W+K + R G PA+++K+
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 43
Score = 43.5 bits (103), Expect = 7e-07
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 70 DDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
E+ +++G + T+ W+K R G P YV
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVND--RQGFVPAAYVKK 43
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 57.1 bits (138), Expect = 2e-10
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQR 101
+S + L ++A+Y + D+ L + +G V +G + +Q
Sbjct: 29 NSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWC-EAQTKNG 87
Query: 102 SGVFPGNYVAPAK 114
G P NY+ P
Sbjct: 88 QGWVPSNYITPVN 100
Score = 35.1 bits (81), Expect = 0.008
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
F + + + + L + G+ + V +G + Q G P++++ +
Sbjct: 46 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWC-EAQTKNGQGWVPSNYITPVN 100
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 53.3 bits (128), Expect = 2e-10
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVA 111
IA + Y Q+D EL++++ + + + W++ + + +G P NYV
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANR-TGYVPSNYVE 84
Score = 40.6 bits (95), Expect = 2e-05
Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 153
+ + S V + Y + EL+++ + +++ W++
Sbjct: 13 DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVR-N 70
Query: 154 RTGRTGLFPASFMKQ 168
RTG P++++++
Sbjct: 71 AANRTGYVPSNYVER 85
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 52.6 bits (127), Expect = 3e-10
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+ Y + + EL + + V + + + W+K + SG P N + +
Sbjct: 5 KSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGD-SGFVPNNILDIMR 57
Score = 38.4 bits (90), Expect = 5e-05
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ + + EL + D++ + R W+K +G +G P +
Sbjct: 5 KSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVR-NASGDSGFVPNNI 52
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 52.7 bits (127), Expect = 3e-10
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERC-QDGWFKGTSQRTQRSGVFPGNYV 110
+ +Y YK + DEL + V V E + W K ++ Q G P Y+
Sbjct: 10 RNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQV-GYVPEKYL 67
Score = 47.7 bits (114), Expect = 2e-08
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 102 SGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGL 160
SG P + + Y + EL + +++ V + D + W K + G+ G
Sbjct: 3 SGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVGY 61
Query: 161 FPASF 165
P +
Sbjct: 62 VPEKY 66
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 56.6 bits (137), Expect = 4e-10
Identities = 15/65 (23%), Positives = 25/65 (38%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNY 109
E IA Y + + +L +G V T+ +D + + R G+ P NY
Sbjct: 5 QASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANY 64
Query: 110 VAPAK 114
V +
Sbjct: 65 VQKRE 69
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ +E +L GD++ + D + + GR G+ PA+++++ +
Sbjct: 19 NFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 52.4 bits (126), Expect = 4e-10
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 50 PECPTFVPEYIAIYPYKPQ-KDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSG 103
P P+ + A+Y + P+ + E+ L++G + + + W+K + + G
Sbjct: 8 PIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIG 66
Query: 104 VFPGNYV 110
P NY+
Sbjct: 67 YIPYNYI 73
Score = 47.8 bits (114), Expect = 3e-08
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 122 PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASF 165
P N E E+ L+ GDL+ + K+D W+K + G G P ++
Sbjct: 25 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNY 72
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 54.7 bits (130), Expect = 7e-10
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVT-----ERCQDGWFKGTSQR--------T 99
P F+ + A + Y DEL+L+ G V V E +GW G +
Sbjct: 139 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLE 198
Query: 100 QRSGVFPGNYVAP 112
+ GVFP N+
Sbjct: 199 KCRGVFPENFTER 211
Score = 48.2 bits (113), Expect = 2e-07
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 114 KFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQR--------TGRTGL 160
K + Y EL+L+ GD++ V ++D+GW G + G+
Sbjct: 144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 203
Query: 161 FPASFMKQ 168
FP +F ++
Sbjct: 204 FPENFTER 211
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 51.9 bits (124), Expect = 8e-10
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 50 PECPTFVP--EYIAIYPYKPQKDDELELRRGSVYTVTE-RCQDGWFKGTSQRTQRSGVFP 106
P EY I P L L G + +T+ + W++G + T G FP
Sbjct: 10 LGLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFP 69
Query: 107 GNYVAP 112
N V P
Sbjct: 70 CNRVHP 75
Score = 46.5 bits (110), Expect = 8e-08
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMK 167
P P L L GD++ + K + W++G T G FP + +
Sbjct: 26 PPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 55.0 bits (131), Expect = 1e-09
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ I L L G + VT +G ++G R G+FP +V
Sbjct: 239 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKI 293
Score = 54.2 bits (129), Expect = 2e-09
Identities = 25/211 (11%), Positives = 53/211 (25%), Gaps = 60/211 (28%)
Query: 15 CLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELE 74
L+ + + S P + +Y + ++L
Sbjct: 84 LLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLP 143
Query: 75 LRRGSVYTVTERCQD------------GWF-----------------KGTSQRTQRSGVF 105
++G + + E+ ++ G + +
Sbjct: 144 FKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEP 203
Query: 106 PGNYVAPAKFRCIVP-----------------------------YPPNSEYELELRVGDL 136
Y P + + L L VGD+
Sbjct: 204 AHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDI 263
Query: 137 IYVHKKRDDGWYKGTLQRTGRTGLFPASFMK 167
+ V + +G ++G + GR GLFP + +K
Sbjct: 264 VKVTRMNINGQWEGEV--NGRKGLFPFTHVK 292
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 51.8 bits (124), Expect = 1e-09
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
++ ++ C +C+++L + C C C+ ++ + +CP C
Sbjct: 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA-QCPHC 64
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 50.8 bits (122), Expect = 1e-09
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 60 IAIYPYKPQ-KDDELELRRGSVYTVTER-----CQDGWFKGTSQRTQRSGVFPGNYV 110
A+Y + P+ + E+ L++G + + + W+K + + G P NY+
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYI 66
Score = 48.9 bits (117), Expect = 8e-09
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 122 PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASF 165
P N E E+ L+ GDL+ + K+D W+K + G G P ++
Sbjct: 18 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNY 65
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 50.9 bits (122), Expect = 2e-09
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L + CS+C L ++ + C HTFCK C+ RCP+C
Sbjct: 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN--RCPKC 56
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 54.5 bits (131), Expect = 2e-09
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 48 RCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPG 107
R V ++A+Y Y+ + + +L ++G + + W+ S T ++G P
Sbjct: 77 RAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPS 136
Query: 108 NYVAPAK 114
NYVAP+
Sbjct: 137 NYVAPSD 143
Score = 37.9 bits (88), Expect = 0.001
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
Y +E +L + G+ + + + W+ TG+TG P++++ SD
Sbjct: 93 DYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 54.0 bits (128), Expect = 3e-09
Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 2/140 (1%)
Query: 27 PCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTER 86
+ S E T + + +
Sbjct: 343 STLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDE 402
Query: 87 CQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD- 145
+ + + + R + Y EL + GD + + D+
Sbjct: 403 SNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQ 462
Query: 146 GWYKGTLQRTGRTGLFPASF 165
GW KG L G+ GL+PA++
Sbjct: 463 GWCKGRLDN-GQVGLYPANY 481
Score = 52.1 bits (123), Expect = 1e-08
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 42 SSHKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQ 100
A+Y Y+ Q+ DEL + G T E + GW KG
Sbjct: 414 GDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDN-G 472
Query: 101 RSGVFPGNYV 110
+ G++P NYV
Sbjct: 473 QVGLYPANYV 482
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 51.0 bits (122), Expect = 3e-09
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
LN L C +C ++ ++ C H+FCK C+ + + K CP C
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPIC 56
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 51.1 bits (122), Expect = 3e-09
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+C +C++ L LPC HT CK C + V L CP C
Sbjct: 16 CQCGICMEIL-VEPVTLPCNHTLCKPCFQSTV-EKASLCCPFC 56
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 50.0 bits (120), Expect = 4e-09
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 61 AIYPYKPQK-DDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYV 110
+Y + + ++EL + G + TVT GW +G + + ++ G+ P +YV
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQ-GLVPTDYV 64
Score = 47.3 bits (113), Expect = 4e-08
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 128 ELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASF 165
EL + G++I V GW +G + G GL P +
Sbjct: 26 ELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLVPTDY 63
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 52.8 bits (127), Expect = 6e-09
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAK 114
+A+Y Y+ ++L ++G V E W+K S T++ G P NYVA
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD 65
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
Y +L + GD + V ++ W+K T + G P++++ + D
Sbjct: 16 DYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD 65
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 49.2 bits (118), Expect = 8e-09
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 1 MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPEC 52
M L ++ + C +CL+ L T L C H+FC+ CL ++ + E CP C
Sbjct: 8 MASGILVNVKEEVTCPICLELL-TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVC 65
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 48.7 bits (116), Expect = 1e-08
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPE 58
+ + EC++CL LPC+H FC C++ K RC C +PE
Sbjct: 7 GNTAPSLTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGK--RCALCRQEIPE 61
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 48.4 bits (115), Expect = 1e-08
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 56 VPEYIAIYPYKPQKDDELELRRGSVYTVTER-CQDGWFKGTSQRTQRSGVFPGNYVAP 112
EY I P L L G + +T+ + W++G + T G FP N V P
Sbjct: 10 FQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67
Score = 46.9 bits (111), Expect = 5e-08
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFMK 167
P P L L GD++ + K + W++G T G FP + +
Sbjct: 18 PPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 49.6 bits (118), Expect = 2e-08
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ + +C C + + CQH CK CL+ + CP C
Sbjct: 49 VEETFQCICCQELV-FRPITTVCQHNVCKDCLDR-SFRAQVFSCPAC 93
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 47.8 bits (114), Expect = 2e-08
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 101 RSGVFPGNYVAPA-------KFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 152
R G P YV + Y S E+ ++ GD++ + + W+K +
Sbjct: 3 RQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
Score = 47.0 bits (112), Expect = 3e-08
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 53 PTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKG 94
T +A+Y Y+ + E+ +++G + T+ W+K
Sbjct: 18 GTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 51.3 bits (122), Expect = 2e-08
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVP--E 58
+ + C +C + D K+ PC H C CL S + CP C + E
Sbjct: 324 LYCEMGSTFQLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEIKGTE 381
Query: 59 YIAIYPY 65
I + P+
Sbjct: 382 PIVVDPF 388
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 47.8 bits (114), Expect = 3e-08
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ D L C +C D + + + C +++C +C+ + E CP C
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 50.7 bits (120), Expect = 3e-08
Identities = 8/69 (11%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 44 HKELRCPECPTFVPEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSG 103
+ A++ + +++L ++G + + ++ ++ W+ + G
Sbjct: 124 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRG 182
Query: 104 VFPGNYVAP 112
+ P YV
Sbjct: 183 MIPVPYVEK 191
Score = 46.0 bits (108), Expect = 1e-06
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 121 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
+ N E +L + GD++ + K ++ W+ G+ G+ P +
Sbjct: 145 FNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPY 188
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 48.2 bits (115), Expect = 3e-08
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
T++DLL C +C + + + + C H +C C+ + +S + CP C
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTC 63
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 47.4 bits (113), Expect = 3e-08
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +CL+ S LPC H FC C+ + + CP C
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLC 46
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 47.0 bits (112), Expect = 5e-08
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 1 MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPEC 52
M L + + C +CL+ L C H+FC+ C+ E ++ + CP C
Sbjct: 8 MASSVLEMIKEEVTCPICLELL-KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 45.8 bits (109), Expect = 1e-07
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L D EC +C+D + +LPC H+FC+KC+++ H+ CP C
Sbjct: 11 QLTDEEECCICMD--GRADLILPCAHSFCQKCIDKWSDRHRN--CPIC 54
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 45.8 bits (109), Expect = 1e-07
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
+ C +CLD L + C H FC KC+ +I +S +CP C
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 46.4 bits (110), Expect = 2e-07
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L LL CS C + L + C+H FC C+ + + + CP C
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVC 61
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 45.3 bits (108), Expect = 2e-07
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCL-----EEIVSSHKELRCPEC 52
+ C +CL+ L T L C H+ C+ C+ E + S + CP C
Sbjct: 13 VTCPICLELL-TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 47.0 bits (111), Expect = 3e-07
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L + L+C +C + + L C H+FC C+ E +++ CP C
Sbjct: 61 LENELQCIICSEYF-IEAVTLNCAHSFCSYCINE--WMKRKIECPIC 104
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 44.7 bits (106), Expect = 3e-07
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
+ C +CLD L + C H FC KC+ +I +S +CP C
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 46.2 bits (109), Expect = 5e-07
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L C C + + C H CK CL+ + CP C
Sbjct: 75 LEQSFMCVCCQELV-YQPVTTECFHNVCKDCLQRSF-KAQVFSCPAC 119
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 43.8 bits (104), Expect = 6e-07
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 11 ECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +CL+ + TS VLPC H + C EE++ RCP C
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY--RCPLC 49
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 44.0 bits (104), Expect = 8e-07
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ D L C +C D + + + C +++C +C+ + E CP C
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 56
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 43.4 bits (102), Expect = 1e-06
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ C +C+D + C H FC +CL + + + CP C
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 62
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 46.3 bits (110), Expect = 1e-06
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIV 119
I +Y Y Q DDEL +G + V + W+KG + + + G+FP NYV
Sbjct: 6 IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--EVSGQVGLFPSNYVKLTTDMDPS 63
Query: 120 PYPPNSEYELE 130
+ + L+
Sbjct: 64 QQWCSDLHLLD 74
Score = 39.4 bits (92), Expect = 2e-04
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 112 PAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQSD 170
+ + Y ++ EL G +I V K D W+KG + +G+ GLFP++++K +
Sbjct: 2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKLTT 58
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 42.7 bits (101), Expect = 1e-06
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPEC 52
CSVCL+ L ++ C H FCK C+ + + CP C
Sbjct: 16 ASCSVCLEYL-KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 43.0 bits (101), Expect = 1e-06
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYI 60
+ + C++C L C C+ + S+ E RCP C + P I
Sbjct: 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 42.9 bits (101), Expect = 2e-06
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ C +C+D + C H FC +CL + + + CP C
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTC 57
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 42.5 bits (100), Expect = 2e-06
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
T+ D +C C L S K C H FC+ C+ ++SS +C C
Sbjct: 11 TVEDKYKCEKCHLVL-CSPKQTECGHRFCESCMAALLSSSSP-KCTAC 56
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 42.1 bits (99), Expect = 3e-06
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 9 LLECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
++ C +C+D + C H FC +CL + + + CP C
Sbjct: 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 50
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 42.5 bits (100), Expect = 3e-06
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +C + V C+H FC+ C E + RC C
Sbjct: 16 FRCFICRQAF-QNPVVTKCRHYFCESCALEHFRATP--RCYIC 55
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 45.0 bits (106), Expect = 4e-06
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRC 117
A++ + D EL + G V V + W+ G G FP ++V +
Sbjct: 34 EALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--ADGEGWFPASFVRLRVNQD 89
Score = 39.9 bits (93), Expect = 2e-04
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 96 SQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 155
Q + + + + + + EL + GD+I V + W+ G +
Sbjct: 14 GGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--A 71
Query: 156 GRTGLFPASFMKQ 168
G FPASF++
Sbjct: 72 DGEGWFPASFVRL 84
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 42.0 bits (99), Expect = 4e-06
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 2 DEWTLNDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
E + LEC VC + L S + LPC H F C+ + H CP C
Sbjct: 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVC 58
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_C 2h0d_B
Length = 165
Score = 43.4 bits (102), Expect = 4e-06
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L+ L C +CLD L + C H FC C+ + S CP C
Sbjct: 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTC 96
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 43.1 bits (101), Expect = 8e-06
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCI 118
IA++ Y+P D +L +G + E+ W+K S T + G P N+VA A
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 119 VPY 121
P+
Sbjct: 74 EPW 76
Score = 35.0 bits (80), Expect = 0.005
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 115 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFMKQ 168
+ Y P+ + +L G+ + + ++ W+K TG+ G P +F+ +
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 41.0 bits (96), Expect = 1e-05
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 11 ECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSH------KELRCPEC 52
C +CL + CQ FC CL++ V + CP+
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKEL-RCPEC 52
+ +LEC +CL+ + C H FCK C+ ++++ K +CP C
Sbjct: 18 MQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 39.7 bits (92), Expect = 3e-05
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 7 NDLLECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
D +EC +C++ L+ C + C+ C I + + CP C PE A+
Sbjct: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYPEDPAV- 66
Query: 64 PYKPQKDDEL 73
YKP +EL
Sbjct: 67 -YKPLSQEEL 75
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 39.4 bits (92), Expect = 4e-05
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 5 TLNDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPEC 52
LN C+VCL+ ++ PC+H F +KCL + + K CP C
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLC 58
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 39.8 bits (93), Expect = 6e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L EC +CL L + PC H FCK C+ + + +CP
Sbjct: 14 PLESKYECPICLMAL-REAVQTPCGHRFCKACIIKSIRD-AGHKCPVD 59
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 38.9 bits (91), Expect = 7e-05
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 7 NDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ C +C + LPC H F K C+ + CP C
Sbjct: 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVC 83
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 40.3 bits (93), Expect = 1e-04
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCP 50
L C + + C H F + ++ + + CP
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCP 222
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 40.1 bits (93), Expect = 1e-04
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ E + + C++C L C C+ + S+ E RCP C
Sbjct: 172 IRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHC 223
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 38.9 bits (90), Expect = 1e-04
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECP 53
L CS C + L C H +C CL I+SS + C C
Sbjct: 28 LEAKYLCSACRNVL-RRPFQAQCGHRYCSFCLASILSSGPQ-NCAACV 73
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 38.1 bits (88), Expect = 2e-04
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 50 PECPTFVPEYIAIYPYKPQKDDELELRRG---SVYTVTERCQDGWFKGT------SQRTQ 100
EC + +A+ Y L + RG V++ + ++ G+
Sbjct: 16 QECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAA 75
Query: 101 RSGVFPGNYV 110
R G FP + V
Sbjct: 76 RLGYFPSSIV 85
Score = 34.6 bits (79), Expect = 0.004
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTL------QRTGRTGLFPASFM 166
+ Y L + G ++YV K R ++ G++ R G FP+S +
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 85
Query: 167 KQ 168
++
Sbjct: 86 RE 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 38.2 bits (88), Expect = 3e-04
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
+ C +C+D + C H FC +CL + S CP C +
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNANTCPTCRKKINHKRYHP 65
Query: 64 PYKPQKDDELELRR 77
Y +
Sbjct: 66 IYIGSGTVSCPICM 79
Score = 30.9 bits (69), Expect = 0.11
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ + + C +C+D + C H FC +CL + + + CP C
Sbjct: 64 HPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTC 119
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 36.3 bits (84), Expect = 4e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 2 DEWTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECPTFVPEYI 60
E + + +C VC + + +LPC+HT C C++ +CP C FV E
Sbjct: 8 VEPSEENSKDCVVCQNG-TVNWVLLPCRHTCLCDGCVKYFQ------QCPMCRQFVQESF 60
Query: 61 AIY 63
A+
Sbjct: 61 ALS 63
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 37.5 bits (86), Expect = 4e-04
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 17/61 (27%)
Query: 11 ECSVCLDRLDTSS-----------------KVLPCQHTFCKKCLEEIVSSHKELRCPECP 53
+C +C+++L +S ++ C H F CL + + + +CP
Sbjct: 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86
Query: 54 T 54
+
Sbjct: 87 S 87
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 37.2 bits (86), Expect = 4e-04
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ C +C L C+H FC+ C+ + CP C
Sbjct: 20 FVKSISCQICEHILADP-VETSCKHLFCRICILRCLKVMGS-YCPSC 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 37.4 bits (86), Expect = 9e-04
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L EC +CL L + PC H FCK C+ + + +CP
Sbjct: 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGH-KCPVD 59
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 35.7 bits (82), Expect = 0.001
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 59 YIAIYPYKPQKDDELELRRGSVYTVTER----CQDGWFKGTSQRTQRSGVFPGNYVAP 112
+ A + +D ++ L G + V ++ + + T+ G +++ P
Sbjct: 20 FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTK--GFVYSSFLKP 75
Score = 35.7 bits (82), Expect = 0.001
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 94 GTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYK 149
G+S + + Y F+ + + ++ L GDL+ V KK+D +
Sbjct: 1 GSSGS-SGASLLA-RYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWL 58
Query: 150 GTLQRTGRTGLFPASFMK 167
+ G +SF+K
Sbjct: 59 --IDNGVTKGFVYSSFLK 74
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 34.9 bits (80), Expect = 0.001
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 8 DLLECSVCLDRLDTSSK----VLPCQHTFCKKCLEEIVSSHKELRCPEC 52
D C C + V C HT C+ C++ + CPEC
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAG-NCPEC 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 33.9 bits (78), Expect = 0.003
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 11 ECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPEC 52
+C++CL L+ V LPC H F + C+++ + ++K +CP C
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPIC 57
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 33.8 bits (78), Expect = 0.004
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 7 NDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPEC 52
++ C VC+ ++ + LPC H F KC+++ + +++ CP C
Sbjct: 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR--TCPIC 66
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 36.1 bits (82), Expect = 0.004
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 123 PNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPAS 164
L GDLI + + GW G +RT + G FP
Sbjct: 587 GEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTD 633
Score = 32.2 bits (72), Expect = 0.073
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 60 IAIYPYKPQKDDE---LELRRGSVYTVTERCQD-----GWFKGTSQRTQRSGVFPGNYV 110
+A+ +E L +G + + + GW G ++RT++ G FP + V
Sbjct: 577 VALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCV 635
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 33.4 bits (76), Expect = 0.007
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 60 IAIYPYKPQKDDELELRRGSVYTVTERCQD--GWF--KGTSQRTQRSGVFPGNYVAPAKF 115
+ + + EL ++ G + ER + GW + T + + G+ P + + +
Sbjct: 21 VVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCISHS 80
Query: 116 R 116
R
Sbjct: 81 R 81
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 32.5 bits (74), Expect = 0.009
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 7 NDLLECSVCLDRL-DTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
N L CS+C R D + H C C + + CP C + I ++
Sbjct: 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA--SCPICKKEIQLVIKVF 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 32.4 bits (74), Expect = 0.012
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
L + + C VC + + +S PC HT C+ C ++ CP C + V +Y
Sbjct: 14 KLKEAMLCMVCCEE-EINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEHVQHVY 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 32.9 bits (74), Expect = 0.014
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C C + +++PC+H FC C + CP C
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGC 43
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 31.7 bits (72), Expect = 0.019
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
L + C +C+DR + + +PC H CK+C E + +CP C T + I+
Sbjct: 22 LQEEKLCKICMDR-NIAIVFVPCGHLVTCKQCAEAVD------KCPMCYTVITFKQKIF 73
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 31.0 bits (71), Expect = 0.024
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 6 LNDLLECSVCLDRLDTSSKV--LP-CQHTFCKKCLEEIVSSHKELRCPEC 52
++D +EC+VCL L+ + LP C H F +C++ + SH CP C
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLC 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 30.6 bits (69), Expect = 0.040
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 6 LNDLLECSVCLDR-LDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECPTFVPEYIAIY 63
LN + C +C R + H C C +++ +K CP C + + Y
Sbjct: 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK--PCPVCRQPIQMIVLTY 62
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 30.9 bits (69), Expect = 0.067
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 7 NDLLECSVCLDRLDTSSKVLPC----QHTFCKKCLEEIVSSHKELRCPECPT 54
+ L C++C +RL+ + V C H FC C E + + CP+
Sbjct: 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 30.3 bits (68), Expect = 0.093
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEE-IVSSHKELRCPECP 53
C + + + K C HT+ + + I S K + CP
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCP 52
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains,
FXR2, structura genomics, structural genomics
consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A
2bkd_N*
Length = 128
Score = 30.4 bits (68), Expect = 0.14
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 88 QDGWFKGTSQRTQRSGV---FPGNYVAPAKFRCI-VPYPPNSEYELELRVGDLIYVHKKR 143
++KG + V F N+ + + V PP ++Y E+ GD + V+ +
Sbjct: 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRA 73
Query: 144 DD----GWYKGTLQR 154
++ GW+ ++
Sbjct: 74 NEQEPCGWWLARVRM 88
>3cu3_A Domain of unknown function with A cystatin-like F; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.00A {Nostoc punctiforme}
SCOP: d.17.4.28
Length = 172
Score = 30.9 bits (69), Expect = 0.14
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 89 DGWFKGTSQRTQRSGV-FPGNYVAPAKFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 147
D KGT + V F + +A V P +E R +YV K D+GW
Sbjct: 70 DTVVKGTRLEGEVDFVRFVNSQLALMLVVIRVILPGQTETSAS-RDSLPLYVVTKGDEGW 128
Query: 148 YKGTLQRTGRTGLFPASFMKQSD 170
L T + L F+ D
Sbjct: 129 QIEGLLNTRKLTLERQFFLDDFD 151
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR
genomics, PSI-2, protein structure initiative; 1.64A
{Nitrosomonas europaea atcc 19718}
Length = 106
Score = 29.9 bits (67), Expect = 0.16
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 131 LRVGDLIYVHKKRDDGW 147
+R G LI V K W
Sbjct: 84 IRPGALIRVKKTEKGSW 100
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA,
exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A
{Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Length = 179
Score = 30.4 bits (68), Expect = 0.20
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 1 MDEWTLNDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
+ D+L+ V D RL T + + C C E+V L+CPEC
Sbjct: 109 SEAVGYLDILKARVIGDNLRLSTKEEEMGVLRALCSNCKTEMVREGDILKCPEC 162
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.1 bits (65), Expect = 0.21
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 12 CSVCLDRLDTSSKVL---PCQHTFCKKCLEEIVSSHKELRCPEC 52
C C V+ C H+F C+ V + RCP C
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLC 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 29.4 bits (65), Expect = 0.60
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 16/58 (27%)
Query: 11 ECSVCLDRLDTSSKV-------LPCQHTFCKKCLEE---------IVSSHKELRCPEC 52
C++C +V C CLEE +CP C
Sbjct: 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFC 367
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 29.1 bits (64), Expect = 0.69
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKE--LRCPECPTFV-PEYIAIYPY 65
L+C + R+ SK + C+H C L + S + +CP C + E +AI +
Sbjct: 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEF 308
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 29.0 bits (64), Expect = 0.76
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 116 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 150
R P+ L GD+ +V G +
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQS 42
Score = 27.9 bits (61), Expect = 2.0
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 59 YI-AIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTS 96
YI + +P L RG V+ V + G + +
Sbjct: 6 YIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHA 44
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 29.0 bits (65), Expect = 0.77
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 28 CQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAIYPYKPQK 69
C + C K + SS L C F EY ++P +P
Sbjct: 9 CDNGKCVKLKNDPRSSEPALSLEACKMFCNEYGLLWP-RPTG 49
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics,
joint center for struct genomics, JCSG, protein
structure initiative; HET: MSE GOL; 1.40A {Caulobacter
vibrioides}
Length = 146
Score = 28.1 bits (62), Expect = 0.94
Identities = 10/69 (14%), Positives = 15/69 (21%), Gaps = 2/69 (2%)
Query: 89 DGWFKGTSQRTQRSGV-FPGNYVAPAKFRC-IVPYPPNSEYELELRVGDLIYVHKKRDDG 146
FK Q A A Y ++ L + +R+
Sbjct: 60 KTIFKDCKQELVTIEARTIAPGSALAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREGV 119
Query: 147 WYKGTLQRT 155
W T
Sbjct: 120 WRFIHGHNT 128
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Length = 209
Score = 28.5 bits (63), Expect = 1.0
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 18 RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L T+ L + ++ + S E++CP+
Sbjct: 157 LLTTAENELGVVVAHSESGIQMVPISWCEMQCPKT 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.3
Identities = 27/190 (14%), Positives = 63/190 (33%), Gaps = 31/190 (16%)
Query: 2 DEWTLNDLLECSVCLDRLDTSSKVLP-CQHTFCKKCLEE------IVSSHKELRCPECPT 54
+N L + S+ + S+ +P K E IV + + +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 55 FVPEYIAIYPY--------KPQKDDELELRRGSVYTVTERCQD-GWFKGTSQRTQRSGVF 105
+P Y+ Y Y + + + L R V+ D + + + +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVF------LDFRFLEQKIRHDSTAWNA 516
Query: 106 PGNYVAP-AKFRCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPA 163
G+ + + + PY +++ + E V ++ ++ K + L + T L
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK------IEENLICSKYTDLLRI 570
Query: 164 SFMKQSDFFI 173
+ M + +
Sbjct: 571 ALMAEDEAIF 580
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 28.1 bits (62), Expect = 1.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 123 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 154
N Y E R LI + K + WYK + R
Sbjct: 314 VNWGYAEETRAWKLIPIKKLPEYNWYKSYMFR 345
>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta
trefoil, cytokine, secreted; 2.00A {Ectromelia virus}
Length = 109
Score = 26.6 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 39 EIVSSHKELRCPECPTFVPEYIAIY-PYKPQKDDE 72
+IV+S E C C +PE+ +Y K K DE
Sbjct: 12 DIVTSSGEFHCSGCVEHMPEFSYMYWLAKDMKSDE 46
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 27.6 bits (60), Expect = 2.4
Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 4/111 (3%)
Query: 66 KPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFRCIVPYPPNS 125
Q E R + G+ + RS G Y+
Sbjct: 386 IAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFL 445
Query: 126 EYELELRVGDLIYVHKKRDDGW----YKGTLQRTGRTGLFPASFMKQSDFF 172
L R GD+++V D+ W + T G P+ + +
Sbjct: 446 SQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREW 496
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 27.2 bits (59), Expect = 3.2
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKE---LRCPECPTFVP 57
L C + RL + + C H C + +++ CP C
Sbjct: 216 LMCPLGKMRLTIPCRAVTCTHLQC-FDAALYLQMNEKKPTWICPVCDKKAA 265
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 3.3
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQH--TFCKKC---LEE-IVSSHKELRCPECPTF 55
LN +L C C ++ V C C L + +V + E R TF
Sbjct: 17 NLNIVLTCPEC--KVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWR-----TF 66
Score = 26.9 bits (59), Expect = 3.4
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 33 CKKCLEEIVSSHK--ELRCPECPTFVPEYI 60
CK +IV ++ C C + + +
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKL 56
Score = 26.2 bits (57), Expect = 5.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 46 ELRCPECPTFVPEYI 60
L CPEC + P+ +
Sbjct: 21 VLTCPECKVYPPKIV 35
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 26.8 bits (60), Expect = 3.9
Identities = 19/91 (20%), Positives = 22/91 (24%), Gaps = 18/91 (19%)
Query: 57 PEYIAIYPYKPQKDDELELRRGSVYTVTERCQDGWFKGTSQRTQRSGVFPGNYVAPAKFR 116
PE IA+ Q L+ G V G R
Sbjct: 273 PENIALSKSSTQSSIRNSLQ-GRVTEAW-------VLGALVR----------VKVDCGVP 314
Query: 117 CIVPYPPNSEYELELRVGDLIYVHKKRDDGW 147
V S E+EL G IY K
Sbjct: 315 LNVLITRRSAEEMELSPGVQIYARFKASSVH 345
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural
genomics, structural genomics consortium, SGC,
alternative splicing; 1.77A {Homo sapiens}
Length = 213
Score = 26.5 bits (58), Expect = 3.9
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 128 ELELRVGDLIYVHKKRDDGWYKGTLQR 154
+ +L V I KKR W+KGTL
Sbjct: 6 QGDLIVSMRILG-KKRTKTWHKGTLIA 31
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 26.7 bits (58), Expect = 4.5
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 120 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG-RTGLFP 162
P + D ++V +K ++ W+ G L + G G P
Sbjct: 53 DDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIP 96
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 26.3 bits (58), Expect = 5.6
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 116 RCIVPYPPNS-----EYELELRVGDLIYVHKKRDDGW---YK-GTLQRTGRTGLFPASFM 166
R + Y L R GD+++V D+ W + + T G P+
Sbjct: 5 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRR 64
Query: 167 KQSDFF 172
+ +
Sbjct: 65 VERREW 70
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 25.5 bits (55), Expect = 5.6
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECPTFVPEYIAI 62
C C V H C CL ++S RCP C +P +
Sbjct: 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSN--RCPICKMPLPTKLRP 77
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 26.3 bits (58), Expect = 6.5
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 116 RCIVPYPPNSEYE-----LELRVGDLIYVHKKRDDGW 147
R + Y PN + L + GD+++V DD W
Sbjct: 9 RALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEW 45
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 26.2 bits (58), Expect = 6.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 109 YVAPAKFRCIVP----Y----PPNSEYELELRVGDLI 137
YV A +R + P P+ EY L+ V +
Sbjct: 51 YVVAAGYRAVAPDLIGMGDSAKPDIEYRLQDHVAYMD 87
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
nucleus, phosphorylation, chromatin regulator, UBL
conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
sapiens}
Length = 159
Score = 25.6 bits (56), Expect = 6.7
Identities = 3/29 (10%), Positives = 4/29 (13%), Gaps = 9/29 (31%)
Query: 26 LPCQHTFCKKCLEEIVSSHKELRCPECPT 54
+ H P T
Sbjct: 1 MGSSHHHHHHS---------SGLVPRGST 20
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
[4Fe-4S], snirr, six-electron REDU phosphate complex;
HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
7gep_A* 8gep_A*
Length = 497
Score = 25.7 bits (57), Expect = 9.2
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 112 PAKFRCIV------PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 165
F+ V + P YE R GD I K DD W+ GR +PA
Sbjct: 243 VETFKAEVERRAGIKFEPIRPYEFTGR-GDRIGWVKGIDDNWHLTLFIENGRILDYPARP 301
Query: 166 MK 167
+K
Sbjct: 302 LK 303
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.455
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,706,091
Number of extensions: 149994
Number of successful extensions: 1177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 495
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)