BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy967
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L9Y|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
The Silkworm Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9Y|B Chain B, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
The Silkworm Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
Length = 154
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 1 MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGL 39
MPA KAVCVL + V GT+FF Q+ SPV V+GE+QGL
Sbjct: 1 MPA-KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGL 37
>pdb|3L9E|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9E|B Chain B, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9E|C Chain C, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9E|D Chain D, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
Length = 154
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 1 MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGL 39
MPA KAVCVL + V GT+FF Q+ SPV V+GE+QGL
Sbjct: 1 MPA-KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGL 37
>pdb|3ECW|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|B Chain B, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|C Chain C, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|D Chain D, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
Length = 153
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEED-GGLNLMNFTVFRA 55
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E G ++ F RA
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNRA 55
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form
pdb|3QQD|B Chain B, Human Sod1 H80r Variant, P212121 Crystal Form
Length = 154
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|E Chain E, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|F Chain F, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|G Chain G, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|H Chain H, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|I Chain I, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|J Chain J, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
Length = 159
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 7 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 46
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKW|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKX|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
Length = 159
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 7 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 46
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|X Chain X, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Y Chain Y, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Z Chain Z, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OZT|M Chain M, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|N Chain N, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|G Chain G, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|H Chain H, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|K Chain K, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|L Chain L, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|I Chain I, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
pdb|1OZT|J Chain J, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a
Resolution
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|B Chain B, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|C Chain C, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|D Chain D, Human Sod1 H80r Variant, P21 Crystal Form
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3GQF|A Chain A, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|B Chain B, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|C Chain C, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|D Chain D, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|E Chain E, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3GQF|F Chain F, Structural And Biophysical Properties Of The Pathogenic
Sod1 Variant H46rH48Q
pdb|3K91|A Chain A, Polysulfane Bridge In Cu-Zn Superoxide Dismutase
pdb|3K91|B Chain B, Polysulfane Bridge In Cu-Zn Superoxide Dismutase
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|2NNX|A Chain A, Crystal Structure Of The H46r, H48q Double Mutant Of
Human [cu-Zn] Superoxide Dismutase
pdb|2NNX|B Chain B, Crystal Structure Of The H46r, H48q Double Mutant Of
Human [cu-Zn] Superoxide Dismutase
pdb|2NNX|C Chain C, Crystal Structure Of The H46r, H48q Double Mutant Of
Human [cu-Zn] Superoxide Dismutase
pdb|2NNX|D Chain D, Crystal Structure Of The H46r, H48q Double Mutant Of
Human [cu-Zn] Superoxide Dismutase
Length = 154
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|2C9S|F Chain F, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|3T5W|A Chain A, 2me Modified Human Sod1
pdb|3T5W|B Chain B, 2me Modified Human Sod1
pdb|3T5W|D Chain D, 2me Modified Human Sod1
pdb|3T5W|E Chain E, 2me Modified Human Sod1
pdb|3T5W|F Chain F, 2me Modified Human Sod1
pdb|3T5W|G Chain G, 2me Modified Human Sod1
pdb|3T5W|H Chain H, 2me Modified Human Sod1
pdb|3T5W|I Chain I, 2me Modified Human Sod1
pdb|3T5W|J Chain J, 2me Modified Human Sod1
pdb|3T5W|K Chain K, 2me Modified Human Sod1
pdb|3T5W|L Chain L, 2me Modified Human Sod1
pdb|3T5W|M Chain M, 2me Modified Human Sod1
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
pdb|2VR8|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
Length = 154
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera
pdb|3GTV|B Chain B, Human-Mouse Sod1 Chimera
pdb|3GTV|C Chain C, Human-Mouse Sod1 Chimera
pdb|3GTV|D Chain D, Human-Mouse Sod1 Chimera
pdb|3GTV|E Chain E, Human-Mouse Sod1 Chimera
pdb|3GTV|F Chain F, Human-Mouse Sod1 Chimera
pdb|3GTV|G Chain G, Human-Mouse Sod1 Chimera
pdb|3GTV|H Chain H, Human-Mouse Sod1 Chimera
pdb|3GTV|I Chain I, Human-Mouse Sod1 Chimera
pdb|3GTV|J Chain J, Human-Mouse Sod1 Chimera
pdb|3GTV|K Chain K, Human-Mouse Sod1 Chimera
pdb|3GTV|L Chain L, Human-Mouse Sod1 Chimera
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a
Length = 154
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii
pdb|3CQQ|B Chain B, Human Sod1 G85r Variant, Structure Ii
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|B Chain B, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|C Chain C, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|D Chain D, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|E Chain E, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|F Chain F, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|G Chain G, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|H Chain H, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|I Chain I, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|J Chain J, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate
Length = 154
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|2VR7|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.58 A Resolution
pdb|2VR7|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.58 A Resolution
Length = 154
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|2VR6|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.3 A Resolution
pdb|2VR6|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.3 A Resolution
pdb|3CQP|A Chain A, Human Sod1 G85r Variant, Structure I
pdb|3CQP|B Chain B, Human Sod1 G85r Variant, Structure I
pdb|3CQP|C Chain C, Human Sod1 G85r Variant, Structure I
pdb|3CQP|D Chain D, Human Sod1 G85r Variant, Structure I
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|4A7G|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4-
Methylpiperazin-1-Yl)quinazoline In The P21 Space Group
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a
Resolution
pdb|1OZU|B Chain B, Crystal Structure Of Familial Als Mutant S134n Of Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a
Resolution
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1P1V|A Chain A, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
pdb|1P1V|B Chain B, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
pdb|1P1V|C Chain C, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3GZP|A Chain A, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|B Chain B, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|C Chain C, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|D Chain D, Human Sod1 G93a Metal-Free Variant
pdb|2WZ6|A Chain A, G93a Sod1 Mutant Complexed With Quinazoline.
pdb|2WZ6|F Chain F, G93a Sod1 Mutant Complexed With Quinazoline
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3GZO|A Chain A, Human Sod1 G93a Variant
pdb|3GZO|B Chain B, Human Sod1 G93a Variant
pdb|3GZO|C Chain C, Human Sod1 G93a Variant
pdb|3GZO|D Chain D, Human Sod1 G93a Variant
pdb|3GZO|E Chain E, Human Sod1 G93a Variant
pdb|3GZO|F Chain F, Human Sod1 G93a Variant
pdb|3GZO|G Chain G, Human Sod1 G93a Variant
pdb|3GZO|H Chain H, Human Sod1 G93a Variant
pdb|3GZO|I Chain I, Human Sod1 G93a Variant
pdb|3GZO|J Chain J, Human Sod1 G93a Variant
pdb|2WKO|A Chain A, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a
Length = 154
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|1HL4|A Chain A, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|B Chain B, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|C Chain C, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|D Chain D, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1SPD|A Chain A, Amyotrophic Lateral Sclerosis And Structural Defects In
Cu,Zn Superoxide Dismutase
pdb|1SPD|B Chain B, Amyotrophic Lateral Sclerosis And Structural Defects In
Cu,Zn Superoxide Dismutase
Length = 154
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|1UXL|A Chain A, I113t Mutant Of Human Sod1
pdb|1UXL|B Chain B, I113t Mutant Of Human Sod1
pdb|1UXL|C Chain C, I113t Mutant Of Human Sod1
pdb|1UXL|D Chain D, I113t Mutant Of Human Sod1
pdb|1UXL|E Chain E, I113t Mutant Of Human Sod1
pdb|1UXL|F Chain F, I113t Mutant Of Human Sod1
pdb|1UXL|G Chain G, I113t Mutant Of Human Sod1
pdb|1UXL|H Chain H, I113t Mutant Of Human Sod1
pdb|1UXL|I Chain I, I113t Mutant Of Human Sod1
pdb|1UXL|J Chain J, I113t Mutant Of Human Sod1
pdb|3ECV|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|B Chain B, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|C Chain C, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|D Chain D, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|4A7G|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With 4-
Methylpiperazin-1-Yl)quinazoline In The P21 Space
Group.
pdb|4A7Q|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
4-(4- Methyl-1,4-Diazepan-1-Yl)quinazoline In The P21
Space Group.
pdb|4A7Q|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
4-(4- Methyl-1,4-Diazepan-1-Yl)quinazoline In The P21
Space Group.
pdb|4A7S|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 5-
Fluorouridine In The P21 Space Group
pdb|4A7S|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With 5-
Fluorouridine In The P21 Space Group
pdb|4A7T|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
Isoproteranol In The P21 Space Group
pdb|4A7T|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
Isoproteranol In The P21 Space Group
pdb|4A7U|A Chain A, Structure Of Human I113t Sod1 Complexed With Adrenaline
In The P21 Space Group.
pdb|4A7U|F Chain F, Structure Of Human I113t Sod1 Complexed With Adrenaline
In The P21 Space Group.
pdb|4A7V|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
Dopamine In The P21 Space Group
pdb|4A7V|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
Dopamine In The P21 Space Group
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1HL5|A Chain A, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|B Chain B, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|C Chain C, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|D Chain D, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|E Chain E, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|F Chain F, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|G Chain G, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|H Chain H, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|I Chain I, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|J Chain J, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|K Chain K, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|L Chain L, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|M Chain M, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|N Chain N, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|O Chain O, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|P Chain P, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|Q Chain Q, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|S Chain S, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1PU0|A Chain A, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|B Chain B, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|C Chain C, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|D Chain D, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|E Chain E, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|F Chain F, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|G Chain G, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|H Chain H, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|I Chain I, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|J Chain J, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|2C9U|A Chain A, 1.24 Angstroms Resolution Structure Of As-Isolated Cu-Zn
Human Superoxide Dismutase
pdb|2C9U|F Chain F, 1.24 Angstroms Resolution Structure Of As-Isolated Cu-Zn
Human Superoxide Dismutase
pdb|2C9V|A Chain A, Atomic Resolution Structure Of Cu-Zn Human Superoxide
Dismutase
pdb|2C9V|F Chain F, Atomic Resolution Structure Of Cu-Zn Human Superoxide
Dismutase
pdb|2V0A|A Chain A, Atomic Resolution Crystal Structure Of Human Superoxide
Dismutase
pdb|2V0A|F Chain F, Atomic Resolution Crystal Structure Of Human Superoxide
Dismutase
pdb|3ECU|A Chain A, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3ECU|B Chain B, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3ECU|C Chain C, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3ECU|D Chain D, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1)
pdb|3KH3|A Chain A, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|B Chain B, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|C Chain C, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|D Chain D, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|E Chain E, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|F Chain F, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|G Chain G, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|H Chain H, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|I Chain I, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|J Chain J, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|K Chain K, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH3|L Chain L, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae;
P212121 Crystal Form Containing 12 Chains In The
Asymmetric Unit
pdb|3KH4|A Chain A, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|B Chain B, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|C Chain C, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|D Chain D, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|E Chain E, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|F Chain F, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3RE0|A Chain A, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
pdb|3RE0|B Chain B, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
pdb|3RE0|C Chain C, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
pdb|3RE0|D Chain D, Crystal Structure Of Human Apo Cu,Zn Superoxide
Dismutase (Sod1) Complexed With Cisplatin
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant
pdb|3H2P|B Chain B, Human Sod1 D124v Variant
Length = 153
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3LTV|A Chain A, Mouse-Human Sod1 Chimera
pdb|3LTV|B Chain B, Mouse-Human Sod1 Chimera
pdb|3LTV|C Chain C, Mouse-Human Sod1 Chimera
pdb|3LTV|D Chain D, Mouse-Human Sod1 Chimera
pdb|3LTV|E Chain E, Mouse-Human Sod1 Chimera
pdb|3LTV|F Chain F, Mouse-Human Sod1 Chimera
Length = 153
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A+KAVCVL + PV+GTI F Q+ + PV ++G+I GL E
Sbjct: 1 AMKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTE 40
>pdb|3GTT|A Chain A, Mouse Sod1
pdb|3GTT|B Chain B, Mouse Sod1
pdb|3GTT|C Chain C, Mouse Sod1
pdb|3GTT|D Chain D, Mouse Sod1
pdb|3GTT|E Chain E, Mouse Sod1
pdb|3GTT|F Chain F, Mouse Sod1
Length = 153
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A+KAVCVL + PV+GTI F Q+ + PV ++G+I GL E
Sbjct: 1 AMKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTE 40
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump
pdb|2WYZ|F Chain F, L38v Sod1 Mutant Complexed With Ump
Length = 153
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+G+ E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTE 40
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WYT|F Chain F, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WZ0|A Chain A, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ0|F Chain F, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ5|A Chain A, L38v Sod1 Mutant Complexed With L-Methionine.
pdb|2WZ5|F Chain F, L38v Sod1 Mutant Complexed With L-Methionine
Length = 153
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+G+ E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTE 40
>pdb|4BD4|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|B Chain B, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|C Chain C, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|D Chain D, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|E Chain E, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|F Chain F, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|G Chain G, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|H Chain H, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
pdb|4BD4|I Chain I, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form, Mutant H43f
Length = 110
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRA 55
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E L F V A
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE----GLFGFHVHGA 50
>pdb|4BCZ|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form.
pdb|4BCZ|B Chain B, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And
Vii Deleted, Apo Form
Length = 110
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRA 55
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E L F V A
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE----GLHGFHVHGA 50
>pdb|1UXM|A Chain A, A4v Mutant Of Human Sod1
pdb|1UXM|B Chain B, A4v Mutant Of Human Sod1
pdb|1UXM|C Chain C, A4v Mutant Of Human Sod1
pdb|1UXM|D Chain D, A4v Mutant Of Human Sod1
pdb|1UXM|E Chain E, A4v Mutant Of Human Sod1
pdb|1UXM|F Chain F, A4v Mutant Of Human Sod1
pdb|1UXM|G Chain G, A4v Mutant Of Human Sod1
pdb|1UXM|H Chain H, A4v Mutant Of Human Sod1
pdb|1UXM|I Chain I, A4v Mutant Of Human Sod1
pdb|1UXM|J Chain J, A4v Mutant Of Human Sod1
pdb|1UXM|K Chain K, A4v Mutant Of Human Sod1
pdb|1UXM|L Chain L, A4v Mutant Of Human Sod1
Length = 153
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A K VCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKVVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3GZQ|A Chain A, Human Sod1 A4v Metal-Free Variant
pdb|3GZQ|B Chain B, Human Sod1 A4v Metal-Free Variant
Length = 154
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A K VCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKVVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|2XJL|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Cu
Ligands
Length = 153
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTV 52
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E L F+V
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE----GLHGFSV 47
>pdb|2GBU|A Chain A, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|B Chain B, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|C Chain C, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|D Chain D, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBV|A Chain A, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|B Chain B, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|C Chain C, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|D Chain D, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|E Chain E, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|F Chain F, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|G Chain G, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|H Chain H, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|I Chain I, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|J Chain J, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
Length = 153
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3CE1|A Chain A, Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE FROM
Cryptococcus Liquefaciens Strain N6
Length = 168
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 4 IKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEED 42
IKA+ VL + PV+G I FTQE + PV V+GEI+ ++ +
Sbjct: 5 IKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDAN 44
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
pdb|2R27|B Chain B, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
Length = 154
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide
Dismutase, Familial Amyotrophic Lateral Sclerosis
(Fals) Mutant H43r
pdb|1PTZ|B Chain B, Crystal Structure Of The Human Cu, Zn Superoxide
Dismutase, Familial Amyotrophic Lateral Sclerosis
(Fals) Mutant H43r
Length = 153
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn
Ligands
Length = 153
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human)
pdb|1AZV|B Chain B, Familial Als Mutant G37r Cuznsod (Human)
Length = 153
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+ L E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKRLTE 40
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|B Chain B, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|C Chain C, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|D Chain D, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|E Chain E, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|F Chain F, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|G Chain G, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|H Chain H, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|I Chain I, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|J Chain J, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
Length = 154
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|F Chain F, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|B Chain B, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|G Chain G, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|C Chain C, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|H Chain H, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|D Chain D, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|I Chain I, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|E Chain E, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|J Chain J, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
Length = 154
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc
Sod: The Structural Effects Of Dimerization
pdb|1L3N|B Chain B, The Solution Structure Of Reduced Dimeric Copper Zinc
Sod: The Structural Effects Of Dimerization
pdb|2AF2|A Chain A, Solution Structure Of Disulfide Reduced And Copper
Depleted Human Superoxide Dismutase
pdb|2AF2|B Chain B, Solution Structure Of Disulfide Reduced And Copper
Depleted Human Superoxide Dismutase
pdb|2LU5|A Chain A, Structure And Chemical Shifts Of Cu(I),Zn(Ii) Superoxide
Dismutase By Solid-State Nmr
Length = 153
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|B Chain B, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|C Chain C, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|D Chain D, C6aC111A CUZN SUPEROXIDE DISMUTASE
Length = 153
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|F Chain F, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|B Chain B, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|G Chain G, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|C Chain C, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|H Chain H, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|D Chain D, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|I Chain I, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|E Chain E, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|J Chain J, Superoxide Dismutase Mutant With Lys 136 Replaced By
Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
Length = 153
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC
Resolution
pdb|1KMG|A Chain A, The Solution Structure Of Monomeric Copper-Free
Superoxide Dismutase
pdb|1RK7|A Chain A, Solution Structure Of Apo Cu,Zn Superoxide Dismutase:
Role Of Metal Ions In Protein Folding
Length = 153
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation
H43f
Length = 153
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase
Length = 153
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide
Dismutase, Nmr, 36 Structures
Length = 153
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 5 KAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 3 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of
Human Copper, Zinc Superoxide Dismutase Bearing The
Same Charge As The Native Protein
Length = 153
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 5 KAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
KAV VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 3 KAVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant
pdb|1N19|B Chain B, Structure Of The Hsod A4v Mutant
Length = 154
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A K V VL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 2 ATKVVAVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 41
>pdb|2Q2L|A Chain A, Crystal Structure Of Superoxide Dismutase From P.
Atrosanguina
pdb|2Q2L|B Chain B, Crystal Structure Of Superoxide Dismutase From P.
Atrosanguina
Length = 152
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 5 KAVCVLNN-EPVKGTIFFTQEHADSPVKVTGEIQGLE 40
K V VL++ E V GTI FTQE D P VTG I GL+
Sbjct: 3 KGVAVLSSSEGVAGTILFTQE-GDGPTTVTGNISGLK 38
>pdb|1TO4|A Chain A, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
pdb|1TO4|B Chain B, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
pdb|1TO4|C Chain C, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
pdb|1TO4|D Chain D, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
pdb|1TO5|A Chain A, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
pdb|1TO5|B Chain B, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
pdb|1TO5|C Chain C, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
pdb|1TO5|D Chain D, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni
Length = 156
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 4 IKAVCVLNNEP-VKGTIFFTQEHADSPVKVTGEIQGLE 40
+KAVCV+ VKG + FTQE + PV V E GL+
Sbjct: 4 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLK 41
>pdb|3KBE|A Chain A, Metal-Free C. Elegans Cu,Zn Superoxide Dismutase
pdb|3KBF|A Chain A, C. Elegans Cu,Zn Superoxide Dismutase
Length = 157
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 5 KAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGL 39
+AV VL E V GTI+ TQ+ + + GEI+GL
Sbjct: 3 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGL 37
>pdb|1XSO|A Chain A, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn
Superoxide Dismutase B Determined By X-Ray
Crystallography At 1.5 Angstroms Resolution
pdb|1XSO|B Chain B, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn
Superoxide Dismutase B Determined By X-Ray
Crystallography At 1.5 Angstroms Resolution
Length = 150
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 4 IKAVCVL-NNEPVKGTIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVF 53
+KAVCVL + VKG + F Q+ + V V G+I+GL + GL+ + VF
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQQ-DEGAVSVEGKIEGLTD--GLHGFHIHVF 48
>pdb|2E46|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4
Length = 157
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 5 KAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGL 39
+A+ VL+ E ++G I FTQ D V V G I GL
Sbjct: 10 RAIAVLSTETIRGNITFTQV-QDGKVHVQGGITGL 43
>pdb|2E47|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4
(Glycosylation Form)
pdb|2E47|B Chain B, Crystal Structure Analysis Of The Clock Protein Ea4
(Glycosylation Form)
Length = 156
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 5 KAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGL 39
+A+ VL+ E ++G I FTQ D V V G I GL
Sbjct: 9 RAIAVLSTETIRGNITFTQV-QDGKVHVQGGITGL 42
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 36 IQGLEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAGAL 78
+ DG M T+ R ++YY + CPP+ + G L
Sbjct: 382 VMNFNRDGA---MRHTISRGTVNYYPNRFDACPPASLKEGGYL 421
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 33 TGEIQG-LEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAG 76
TG+ +G L GG + T F+ + DY+ G + C V G
Sbjct: 268 TGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 33 TGEIQG-LEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAG 76
TG+ +G L GG + T F+ + DY+ G + C V G
Sbjct: 268 TGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 33 TGEIQG-LEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAG 76
TG+ +G L GG + T F+ + DY+ G + C V G
Sbjct: 268 TGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 33 TGEIQG-LEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAG 76
TG+ +G L GG + T F+ + DY+ G + C V G
Sbjct: 268 TGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 33 TGEIQG-LEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAG 76
TG+ +G L GG + T F+ + DY+ G + C V G
Sbjct: 268 TGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 33 TGEIQG-LEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAG 76
TG+ +G L GG + T F+ + DY+ G + C V G
Sbjct: 268 TGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 33 TGEIQG-LEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAG 76
TG+ +G L GG + T F+ + DY+ G + C V G
Sbjct: 268 TGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,464,217
Number of Sequences: 62578
Number of extensions: 88561
Number of successful extensions: 254
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 68
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)