Query psy967
Match_columns 82
No_of_seqs 123 out of 519
Neff 4.4
Searched_HMMs 29240
Date Sat Aug 17 01:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9y_A Cu-znsod1, superoxide d 99.4 1.4E-13 4.9E-18 95.8 5.5 49 2-51 1-50 (154)
2 3kbe_A Superoxide dismutase [C 99.4 2.6E-13 8.8E-18 95.0 6.0 49 3-51 1-50 (157)
3 4a7u_A Superoxide dismutase [C 99.4 6.2E-13 2.1E-17 92.5 6.4 50 3-52 1-52 (153)
4 3ce1_A Superoxide dismutase [C 99.3 1.1E-12 3.9E-17 92.7 6.0 51 2-52 3-56 (168)
5 1f1g_A Cuznsod, copper-zinc su 99.3 2.2E-12 7.6E-17 89.8 6.0 49 3-51 1-52 (154)
6 3pu7_A Superoxide dismutase [C 99.3 3.4E-12 1.2E-16 89.1 6.3 49 2-51 1-51 (154)
7 1to4_A Superoxide dismutase; b 99.3 3.2E-12 1.1E-16 89.2 6.1 49 3-51 3-53 (156)
8 2q2l_A Superoxide dismutase; S 99.3 4.7E-12 1.6E-16 88.1 6.2 48 3-51 1-50 (152)
9 3f7l_A Copper,zinc superoxide 99.3 4.3E-12 1.5E-16 88.3 5.5 47 3-51 1-49 (152)
10 2wyt_A Superoxide dismutase [C 99.3 7.5E-12 2.6E-16 87.1 6.5 49 3-51 1-51 (153)
11 2e47_A EA4, TIME interVal meas 99.3 5.1E-12 1.8E-16 88.3 4.9 49 2-51 6-55 (156)
12 1xso_A Copper,zinc superoxide 99.2 1.2E-11 4.1E-16 85.7 5.9 47 4-51 1-49 (150)
13 1do5_A Human copper chaperone 99.1 5.1E-11 1.8E-15 83.1 5.5 48 3-51 3-52 (154)
14 1ej8_A Lys7; beta barrel, copp 99.1 1.4E-10 4.8E-15 80.1 4.8 45 5-50 2-59 (140)
15 2jlp_A Extracellular superoxid 99.0 7.4E-10 2.5E-14 81.6 6.1 49 3-51 40-101 (222)
16 1qup_A Superoxide dismutase 1 98.9 1.4E-09 4.9E-14 78.5 5.6 46 4-50 77-135 (222)
17 1jk9_B CCS, copper chaperone f 98.8 2.5E-09 8.4E-14 78.7 4.2 46 5-51 79-137 (249)
18 1oal_A Superoxide dismutase; o 98.7 7.2E-09 2.5E-13 72.0 4.4 46 3-51 4-50 (151)
19 1pzs_A Superoxide dismutase [C 98.7 2.4E-08 8.1E-13 72.7 5.4 47 3-51 37-89 (208)
20 2aqm_A Superoxide dismutase [C 98.6 1.9E-08 6.3E-13 70.1 2.9 45 4-51 7-53 (154)
21 1xtm_B Hypothetical superoxide 98.5 6.6E-08 2.3E-12 68.6 4.6 46 3-51 19-70 (175)
22 2aqp_A Superoxide dismutase [C 98.5 1.7E-07 5.9E-12 65.7 5.3 36 14-51 26-62 (164)
23 1z9n_A Superoxide dismutase [C 98.5 1.8E-07 6.2E-12 66.6 5.5 46 4-51 25-75 (177)
24 1eqw_A Cu,Zn superoxide dismut 98.5 1.7E-07 5.7E-12 65.3 5.1 36 14-51 17-53 (156)
25 1eso_A SOD, Cu, Zn superoxide 98.5 1.8E-07 6.2E-12 65.0 4.7 36 14-51 17-53 (154)
26 1t1d_A Protein (potassium chan 96.8 0.00026 9E-09 45.7 0.8 25 49-73 49-74 (100)
27 1nn7_A Potassium channel KV4.2 96.6 0.00043 1.5E-08 44.7 0.6 25 49-73 47-71 (105)
28 3kvt_A Potassium channel prote 96.4 0.00071 2.4E-08 44.5 0.6 25 49-73 53-77 (115)
29 1s1g_A Potassium voltage-gated 96.4 0.00078 2.7E-08 44.9 0.7 25 49-73 60-84 (124)
30 3drz_A BTB/POZ domain-containi 96.2 0.00096 3.3E-08 42.8 0.6 25 49-73 57-81 (107)
31 2nz0_B Potassium voltage-gated 96.2 0.001 3.6E-08 45.3 0.6 25 49-73 82-106 (140)
32 3drx_A BTB/POZ domain-containi 95.2 0.0041 1.4E-07 45.0 0.6 26 49-74 63-88 (202)
33 2r9r_B Paddle chimera voltage 92.2 0.036 1.2E-06 43.7 0.9 26 49-74 100-126 (514)
34 4doi_A Chalcone--flavonone iso 47.1 23 0.00079 25.9 4.1 44 18-62 160-204 (246)
35 4dok_A Similarity to chalcone- 39.7 34 0.0012 24.1 3.9 45 18-63 143-187 (208)
36 1jyo_A SICP; bacterial pathoge 34.2 45 0.0015 22.2 3.6 42 7-57 26-68 (130)
37 1vd0_A Head decoration protein 33.2 5.9 0.0002 26.4 -0.9 18 55-72 70-92 (109)
38 1c5e_A Head decoration protein 32.6 6.7 0.00023 25.5 -0.7 18 55-72 56-78 (95)
39 1td4_A Head decoration protein 29.9 9 0.00031 25.7 -0.4 18 54-71 73-95 (115)
40 2mcm_A Macromomycin; apoprotei 28.7 36 0.0012 22.5 2.4 19 29-47 15-33 (112)
41 1noa_A Neocarzinostatin; antib 27.2 35 0.0012 22.6 2.1 19 29-47 16-34 (113)
42 1lml_A Leishmanolysin; metallo 22.6 27 0.00091 27.4 1.0 14 58-71 450-463 (478)
43 2b49_A Protein tyrosine phosph 22.1 29 0.00099 24.8 1.0 15 52-66 268-282 (287)
44 3qds_A Boletus edulis lectin; 21.1 2E+02 0.0069 19.7 5.1 44 12-63 48-101 (143)
45 3t30_B Nucleoplasmin-2; beta-b 20.9 79 0.0027 20.5 2.9 30 6-35 67-106 (110)
46 2l3i_A Aoxki4A, antimicrobial 20.9 24 0.00084 18.2 0.3 8 65-72 2-9 (30)
47 1vc3_A L-aspartate-alpha-decar 20.7 14 0.00047 18.8 -0.7 13 47-59 10-22 (26)
No 1
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} SCOP: b.1.8.1 PDB: 3l9e_A
Probab=99.43 E-value=1.4e-13 Score=95.83 Aligned_cols=49 Identities=47% Similarity=0.840 Sum_probs=44.0
Q ss_pred CceeEEEEecCCCeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 2 ~~~kAVcVL~G~~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
|++||||+|+|+ |+|+|+|+|..+++.++|+++|+||+||. |||||.+-
T Consensus 1 ~~~~Ava~l~G~-v~G~v~f~q~~~~~~v~v~~~l~GL~pG~hg~HIHe~G 50 (154)
T 3l9y_A 1 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFG 50 (154)
T ss_dssp -CEEEEEEEEES-SEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCC
T ss_pred CCeEEEEEEcCC-CEEEEEEEEeCCCCcEEEEEEEECCCCCCccEEEEecC
Confidence 678999999995 99999999998667899999999999994 99999875
No 2
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A
Probab=99.41 E-value=2.6e-13 Score=95.01 Aligned_cols=49 Identities=35% Similarity=0.591 Sum_probs=45.0
Q ss_pred ceeEEEEecCCCeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
++||||+|+|+.|+|+|+|+|..+++++.|+++|+||+||. |||||.+-
T Consensus 1 p~~Avavl~g~~V~G~v~f~q~~~g~~v~v~~~l~GL~pG~hgfHIHe~G 50 (157)
T 3kbe_A 1 SNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYG 50 (157)
T ss_dssp CCEEEEEEBCSSCEEEEEEECSSTTSCCEEEEEEESCCSSCEEEEEESCC
T ss_pred CeEEEEEEeCCCEEEEEEEEEeCCCCeEEEEEEEECCCCCcccEEEeecC
Confidence 57999999998899999999998767899999999999995 99999864
No 3
>4a7u_A Superoxide dismutase [CU-ZN]; oxidoreductase, amyotrophic lateral sclerosis, antioxidant, mutation, metal-binding, Zn superoxide dismutase; HET: ALE; 0.98A {Homo sapiens} PDB: 3ecv_A 1uxl_A* 4a7g_F* 4a7q_A* 4a7t_A* 4a7s_A* 4a7v_A* 4b3e_A 4a7g_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A ...
Probab=99.38 E-value=6.2e-13 Score=92.50 Aligned_cols=50 Identities=48% Similarity=0.789 Sum_probs=44.9
Q ss_pred ceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeehh
Q psy967 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFTV 52 (82)
Q Consensus 3 ~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~~ 52 (82)
.+||||+|+|+ +|+|+|+|+|..++++|+|+++|+||+||. |||||.+-.
T Consensus 1 ~~~Avavl~g~~~v~G~v~f~q~~~~~~v~v~~~i~GL~pG~hg~HIHe~Gd 52 (153)
T 4a7u_A 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGD 52 (153)
T ss_dssp CEEEEEEEBCSSSCEEEEEEEESSTTCCEEEEEEEESCCSEEEEEEEESCCC
T ss_pred CcEEEEEEcCCCccEEEEEEEEeCCCCcEEEEEEEECCCCCcccEEEeecCc
Confidence 37999999998 799999999998666899999999999994 999998753
No 4
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens}
Probab=99.35 E-value=1.1e-12 Score=92.75 Aligned_cols=51 Identities=41% Similarity=0.744 Sum_probs=42.2
Q ss_pred CceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCC-C-cCCceeeehh
Q psy967 2 PAIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE-D-GGLNLMNFTV 52 (82)
Q Consensus 2 ~~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~P-g-~gfHih~~~~ 52 (82)
||+||+|+|+++ +|+|+|+|+|..+++++.|+++|+||+| | .|||||.+-.
T Consensus 3 ~~~~Ava~l~g~~~v~G~v~f~q~~~~~~v~v~~~i~GL~p~G~hg~HIHe~Gd 56 (168)
T 3ce1_A 3 STIKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFGD 56 (168)
T ss_dssp --CEEEEEEBCSSSCEEEEEEEEC---CCEEEEEEEESCCTTCEEEEEEESCCC
T ss_pred CccEEEEEEcCCCccEEEEEEEEeCCCCCEEEEEEEeeCCCCCeeeEEEecCCc
Confidence 578999999997 8999999999865568999999999999 6 4999998764
No 5
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A
Probab=99.32 E-value=2.2e-12 Score=89.79 Aligned_cols=49 Identities=31% Similarity=0.518 Sum_probs=43.2
Q ss_pred ceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCC-C-cCCceeeeh
Q psy967 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE-D-GGLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~P-g-~gfHih~~~ 51 (82)
|+||+|+|+++ +|+|+|+|+|..+++++.|+++|+||+| | .|||||.+-
T Consensus 1 ~~~Ava~l~g~~~v~G~v~f~q~~~~~~v~v~~~i~GL~p~G~hg~HIHe~G 52 (154)
T 1f1g_A 1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFG 52 (154)
T ss_dssp -CEEEEEEBCSSSCEEEEEEECSSTTSCEEEEEEEESCCSSCEEEEEEESCC
T ss_pred CeEEEEEEcCCCccEEEEEEEEeCCCCCEEEEEEEeeCCCCCeEeEEEecCC
Confidence 47999999997 8999999999865568999999999999 6 499999865
No 6
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 3s0p_A 1srd_A
Probab=99.30 E-value=3.4e-12 Score=89.07 Aligned_cols=49 Identities=33% Similarity=0.540 Sum_probs=43.9
Q ss_pred CceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 2 PAIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 2 ~~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
+.+||||+|+|+ +|+|+|+|+|.. ++++.|+++|+||+||. |||||.+-
T Consensus 1 ~~~~Avavl~g~~~V~G~v~f~q~~-~g~v~v~~~i~GL~pG~hgfHIHe~G 51 (154)
T 3pu7_A 1 ATKKAVAVLKGNSNVEGVVTLSQDD-DGPTTVNVRITGLAPGLHGFHLHEYG 51 (154)
T ss_dssp CEEEEEEEEBCSSSCEEEEEEEEET-TSCEEEEEEEESCCSEEEEEEEESCC
T ss_pred CCceEEEEECCCCCCEEEEEEEEeC-CCcEEEEEEEECCCCCcccEEEeecC
Confidence 367999999997 899999999987 45799999999999994 99999864
No 7
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A
Probab=99.30 E-value=3.2e-12 Score=89.25 Aligned_cols=49 Identities=41% Similarity=0.725 Sum_probs=44.1
Q ss_pred ceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCC-cCCceeeeh
Q psy967 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEED-GGLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg-~gfHih~~~ 51 (82)
|++|+|+|+++ +|+|+|+|+|..+++++.|+++|+||+|| .|||||.+-
T Consensus 3 ~~~Ava~l~~~~~v~G~v~f~q~~~~~~v~v~~~l~GL~pG~hg~HIHe~G 53 (156)
T 1to4_A 3 NMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFG 53 (156)
T ss_dssp CCEEEEEEBCSSSCEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCC
T ss_pred ceEEEEEEeCCCccEEEEEEEEeCCCCCEEEEEEECCCCCCcEeEEEecCC
Confidence 57999999997 89999999998666689999999999999 499999764
No 8
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea}
Probab=99.29 E-value=4.7e-12 Score=88.08 Aligned_cols=48 Identities=44% Similarity=0.658 Sum_probs=43.1
Q ss_pred ceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
|+||+|+|+++ +|+|+|+|+|.. ++++.|+++|+||+||. |||||.+-
T Consensus 1 ~~~Ava~l~g~~~v~G~v~f~q~~-~g~v~v~~~i~GL~pG~hg~HIHe~G 50 (152)
T 2q2l_A 1 MAKGVAVLSSSEGVAGTILFTQEG-DGPTTVTGNISGLKPGLHGFHVHALG 50 (152)
T ss_dssp CEEEEEECBCSSSCEEEEEEEEST-TSCEEEEEEEESCCSEEEEEEEESCC
T ss_pred CceEEEEEeCCCccEEEEEEEEcC-CCcEEEEEEECCCCCcceeEEEeecC
Confidence 57999999997 899999999964 56799999999999994 99999875
No 9
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} SCOP: b.1.8.1 PDB: 3f7k_A
Probab=99.27 E-value=4.3e-12 Score=88.28 Aligned_cols=47 Identities=49% Similarity=0.815 Sum_probs=42.3
Q ss_pred ceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
.+||||+|+|+ +|+|+|+|+|. .+.+.|+++|+||+||. |||||.+-
T Consensus 1 ~~~Avavl~g~~~v~G~v~f~q~--~~~v~v~~~l~GL~pG~hgfHIHe~G 49 (152)
T 3f7l_A 1 AIHAVCVLKGDSPVTGTIHLKEE--GDMVTVTGEITGLTPGKHGFHVHEFG 49 (152)
T ss_dssp CCEEEEEEBCSSSCEEEEEEEEE--TTEEEEEEEEESCCSEEEEEEEESCC
T ss_pred CeEEEEEEcCCCCcEEEEEEEEc--CCcEEEEEEEECCCCCcccEEEeecC
Confidence 36999999997 89999999999 35799999999999994 99999865
No 10
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ...
Probab=99.27 E-value=7.5e-12 Score=87.13 Aligned_cols=49 Identities=47% Similarity=0.830 Sum_probs=44.6
Q ss_pred ceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCC-cCCceeeeh
Q psy967 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEED-GGLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg-~gfHih~~~ 51 (82)
.++|+|+|+++ +|+|+|+|+|..++.++.|+++|+||+|| .|||||.+-
T Consensus 1 ~~~Ava~l~~~~~v~G~v~f~q~~~g~~v~v~~~i~GL~pG~hg~HIHe~g 51 (153)
T 2wyt_A 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTEGLHGFHVHEFG 51 (153)
T ss_dssp CEEEEEEEBCSSSCEEEEEEEECSTTCCEEEEEEEESCCSEEEEEEEESCC
T ss_pred CeEEEEEEcCCCceEEEEEEEEcCCCCcEEEEEEECCCCCcceeEEEecCC
Confidence 37999999987 89999999999876789999999999999 499999876
No 11
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A
Probab=99.25 E-value=5.1e-12 Score=88.32 Aligned_cols=49 Identities=31% Similarity=0.534 Sum_probs=44.3
Q ss_pred CceeEEEEecCCCeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 2 ~~~kAVcVL~G~~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
|+++|+|+|++++|+|+|+| |..+++++.|+++|+||+||. |||||.+-
T Consensus 6 ~~~~Ava~l~~~~v~G~v~f-q~~~g~~v~v~~~i~GL~pG~hg~HIHe~G 55 (156)
T 2e47_A 6 TPSRAIAVLSTETIRGNITF-TQVQDGKVHVQGGITGLPPGEYGFHVHEKG 55 (156)
T ss_dssp CCCEEEEEEECSSCEEEEEE-EECGGGCEEEEEEEESSCSEEEEEEEESCC
T ss_pred cccEEEEEEeCCCeEEEEEE-EeCCCCcEEEEEEEEeCCCCcEEEEEeCCC
Confidence 56899999999889999999 987667899999999999994 99999875
No 12
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1
Probab=99.23 E-value=1.2e-11 Score=85.74 Aligned_cols=47 Identities=40% Similarity=0.752 Sum_probs=42.2
Q ss_pred eeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 4 IKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 4 ~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
+||+|+|+++ +|+|+|+|+|.. ++++.|+++|+||+||. |||||.+-
T Consensus 1 ~~Ava~l~~~~~v~G~v~f~q~~-~~~v~v~~~i~GL~pG~hg~HIHe~G 49 (150)
T 1xso_A 1 VKAVCVLAGSGDVKGVVHFEQQD-EGAVSVEGKIEGLTDGLHGFHIHVFG 49 (150)
T ss_dssp CEEEEEEBCSSSCEEEEEEEEST-TSCEEEEEEEESCCSEEEEEEEESCC
T ss_pred CEEEEEEcCCCccEEEEEEEEcC-CCcEEEEEEECCCCCCceeEEEecCC
Confidence 5899999997 899999999984 46799999999999994 99999875
No 13
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1
Probab=99.14 E-value=5.1e-11 Score=83.07 Aligned_cols=48 Identities=29% Similarity=0.436 Sum_probs=42.8
Q ss_pred ceeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
+.+|+|+|+++ +|+|+|+|+|..+ ..+.|+++|+||+||. |||||.+-
T Consensus 3 ~~~ava~l~~~~~v~G~v~f~q~~~-~~v~v~~~i~GL~pG~hg~HIHe~G 52 (154)
T 1do5_A 3 LGAAVAILGGPGTVQGVVRFLQLTP-ERCLIEGTIDGLEPGLHGLHVHQYG 52 (154)
T ss_dssp CEEEEEEEBCSSSCEEEEEEEEEET-TEEEEEEEEESCCSEEEEEEEESCC
T ss_pred cceEEEEEcCCCCcEEEEEEEEecC-CCEEEEEEEECCCCCceeEEEeecC
Confidence 56999999997 7999999999654 5799999999999994 99999875
No 14
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1
Probab=99.06 E-value=1.4e-10 Score=80.14 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=39.4
Q ss_pred eEEEEecCC-----------CeEEEEEEEEcCCCCCeEEEEEEecCC-CC-cCCceeee
Q psy967 5 KAVCVLNNE-----------PVKGTIFFTQEHADSPVKVTGEIQGLE-ED-GGLNLMNF 50 (82)
Q Consensus 5 kAVcVL~G~-----------~VsGtV~FtQ~~~~~~V~ItG~I~GL~-Pg-~gfHih~~ 50 (82)
+|||+|+++ +|+|+|+|+|..+ .++.|+++|+||+ || +|||||.+
T Consensus 2 aAV~vl~~~~~~~~~~~~~~~v~G~v~f~q~~~-~~v~i~~~l~GL~~pG~HGfHIHe~ 59 (140)
T 1ej8_A 2 SAVAILETFQKYTIDQKKDTAVRGLARIVQVGE-NKTLFDITVNGVPEAGNYHASIHEK 59 (140)
T ss_dssp EEEEEEECCSCCTTCCCCSCCEEEEEEEEEEET-TEEEEEEEEEEESSCEEEEEEEESC
T ss_pred cEEEEEccCCcccccccCCCCcEEEEEEEEeCC-CCEEEEEEEECCCCCCeeEEEEcCC
Confidence 699999874 5999999999754 4799999999999 99 49999975
No 15
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens}
Probab=98.98 E-value=7.4e-10 Score=81.64 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=42.8
Q ss_pred ceeEEEEecC--------CCeEEEEEEEEcCCCCCeEEEEEEecCCCC-----cCCceeeeh
Q psy967 3 AIKAVCVLNN--------EPVKGTIFFTQEHADSPVKVTGEIQGLEED-----GGLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G--------~~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg-----~gfHih~~~ 51 (82)
+++|+|+|.+ ++|+|+|+|+|..+++++.|+++|+||+|| +|||||.+-
T Consensus 40 ~~~Avc~l~~~a~~~~~~~~v~G~V~f~q~~~~~~v~v~~~l~GL~pG~~~g~HGfHIHe~G 101 (222)
T 2jlp_A 40 TLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFG 101 (222)
T ss_dssp CEEEEEEEEECTTCCTTSCCCEEEEEEEESSTTSCEEEEEEEECSCSSSSEEEEEEEEESCC
T ss_pred ceEEEEEeeccccccCCCCCcEEEEEEEEeCCCCeEEEEEEEeCCCCCCCCCceeEEEECCC
Confidence 6799999962 279999999999876789999999999998 499999875
No 16
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.91 E-value=1.4e-09 Score=78.47 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=40.1
Q ss_pred eeEEEEecCC-----------CeEEEEEEEEcCCCCCeEEEEEEecCC-CC-cCCceeee
Q psy967 4 IKAVCVLNNE-----------PVKGTIFFTQEHADSPVKVTGEIQGLE-ED-GGLNLMNF 50 (82)
Q Consensus 4 ~kAVcVL~G~-----------~VsGtV~FtQ~~~~~~V~ItG~I~GL~-Pg-~gfHih~~ 50 (82)
.+|||+|++. +|.|+|+|+|..+ .++.|+++|+||+ || +|||||.+
T Consensus 77 ~~av~~l~~~~~~~~~~~~~~~v~G~v~~~q~~~-~~~~v~~~i~GL~~~g~hg~hiHe~ 135 (222)
T 1qup_A 77 SSAVAILETFQKYTIDQKKDTAVRGLARIVQVGE-NKTLFDITVNGVPEAGNYHASIHEK 135 (222)
T ss_dssp CEEEEEEECCSCCSSCCCCSCCEEEEEEEEECSS-SCEEEEEEEEEESSCEEEEEEEESC
T ss_pred ceeeEEeccccccccccccCCCceEEEEEEEecC-CCEEEEEEEeCCCCCCcEeEEEcCC
Confidence 4899999873 5999999999754 4799999999999 98 49999975
No 17
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.82 E-value=2.5e-09 Score=78.69 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=39.7
Q ss_pred eEEEEecCC-----------CeEEEEEEEEcCCCCCeEEEEEEecCC-CC-cCCceeeeh
Q psy967 5 KAVCVLNNE-----------PVKGTIFFTQEHADSPVKVTGEIQGLE-ED-GGLNLMNFT 51 (82)
Q Consensus 5 kAVcVL~G~-----------~VsGtV~FtQ~~~~~~V~ItG~I~GL~-Pg-~gfHih~~~ 51 (82)
+|||+|++. +|.|+|+|+|..+ .++.|+++|+||+ || +|||||.+-
T Consensus 79 ~Av~~l~~~~~~~~~~~~~~~v~G~v~f~q~~~-~~~~v~~~~~GL~~~g~hg~hiHe~G 137 (249)
T 1jk9_B 79 SAVAILETFQKYTIDQKKDTAVRGLARIVQVGE-NKTLFDITVNGVPEAGNYHASIHEKG 137 (249)
T ss_dssp EEEEEEEESSCCTTSCTTCCSEEEEEEEEEEET-TEEEEEEEEEEESSCEEEEEEEESCC
T ss_pred eeEEEeccccccccccccCCCcEEEEEEEEcCC-CCEEEEEEEeCCCCCCcEeEEEEeCC
Confidence 799999863 6999999999754 4799999999999 98 499999764
No 18
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A
Probab=98.75 E-value=7.2e-09 Score=71.96 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=38.7
Q ss_pred ceeEEEEecCCCeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
.|++++.. ..+|+|+|+|+|.. + .+.|+++|+||+||. |||||.+-
T Consensus 4 ~~~~~~~~-~~~v~G~v~f~q~~-~-gv~v~~~l~GL~pG~hGfHIHe~G 50 (151)
T 1oal_A 4 TVKMTDLQ-TGKPVGTIELSQNK-Y-GVVFIPELADLTPGEHGFHIHQNG 50 (151)
T ss_dssp EEEEEETT-TCCEEEEEEEEEET-T-EEEEEEEECSCCSEEECEEEESSS
T ss_pred EEEEeeCC-CCCeEEEEEEEEcC-C-cEEEEEEEECCCCCcceEEEccCC
Confidence 36777777 34899999999985 3 399999999999994 99999865
No 19
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1
Probab=98.67 E-value=2.4e-08 Score=72.71 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=40.8
Q ss_pred ceeEEEEecCC--CeEEEEEEEEcCCCCCeEEEEEEec---CCCC-cCCceeeeh
Q psy967 3 AIKAVCVLNNE--PVKGTIFFTQEHADSPVKVTGEIQG---LEED-GGLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~--~VsGtV~FtQ~~~~~~V~ItG~I~G---L~Pg-~gfHih~~~ 51 (82)
..+|+|+|.+. ++.|+|+|+|.. ..+.|+++|+| |+|| +|||||.+-
T Consensus 37 ~~~ava~L~~~~g~v~G~V~f~q~~--~gv~v~~~l~G~~~L~pG~HGfHIHe~G 89 (208)
T 1pzs_A 37 AQSLTSTLTAPDGTKVATAKFEFAN--GYATVTIATTGVGKLTPGFHGLHIHQVG 89 (208)
T ss_dssp -CEEEEEEECTTSCEEEEEEEEEET--TEEEEEEEESSSSSSCSEEECEEEESSC
T ss_pred CceEEEEEeCCCCceEEEEEEEEcC--CcEEEEEEEeCCccCCCCceeEEEecCC
Confidence 46899999864 799999999985 36999999999 9999 499999875
No 20
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus}
Probab=98.60 E-value=1.9e-08 Score=70.09 Aligned_cols=45 Identities=9% Similarity=0.134 Sum_probs=36.1
Q ss_pred eeEEEEecCC-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 4 IKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 4 ~kAVcVL~G~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
+++++ ..++ +|+|+|+|+|.. + .+.|+++|+||+||. |||||.+-
T Consensus 7 ~~~~~-~~~~~~v~G~v~f~q~~-~-gv~v~~~l~GL~pG~hGfHIHe~G 53 (154)
T 2aqm_A 7 MYEAL-PTGPGKEVGTVVISEAP-G-GLHFKVNMEKLTPGYHGFHVHENP 53 (154)
T ss_dssp EEEEE-TTEEEEEEEEEEEECCT-T-SEEEEEEECSCCSEEECEEEESSS
T ss_pred EEEec-cCCCCceEEEEEEEEcC-C-CEEEEEEEECCCCCcceEEEccCC
Confidence 45555 2333 899999999985 3 399999999999994 99999875
No 21
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A
Probab=98.55 E-value=6.6e-08 Score=68.55 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=38.1
Q ss_pred ceeEEEEecCC--CeEEEEEEEEcCCCCCeEEEEEEe--cC-CCCc-CCceeeeh
Q psy967 3 AIKAVCVLNNE--PVKGTIFFTQEHADSPVKVTGEIQ--GL-EEDG-GLNLMNFT 51 (82)
Q Consensus 3 ~~kAVcVL~G~--~VsGtV~FtQ~~~~~~V~ItG~I~--GL-~Pg~-gfHih~~~ 51 (82)
+.+|+|+|.+. .+.|+|+|+| . ..+.|+++|+ || +||. |||||.+-
T Consensus 19 ~~~a~a~l~~~~g~~vG~v~f~q-~--~~v~v~~~i~~~GL~~pG~hg~HIHe~G 70 (175)
T 1xtm_B 19 AFGHHVQLVNREGKAVGFIEIKE-S--DDEGLDIHISANSLRPGASLGFHIHEKG 70 (175)
T ss_dssp CCEEEEEEEETTCCEEEEEEEEE-C--SSSSEEEEEEECSCCTTCEECEEEESSC
T ss_pred CceEEEEEeCCCCCcEEEEEEEe-C--CCEEEEEEEEcCCCCCCCcceEEEecCC
Confidence 56899999643 4459999999 4 3589999999 99 9994 99999865
No 22
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A
Probab=98.48 E-value=1.7e-07 Score=65.75 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred CeEEEEEEEEcCCCCCeEEEEEEecCCCC-cCCceeeeh
Q psy967 14 PVKGTIFFTQEHADSPVKVTGEIQGLEED-GGLNLMNFT 51 (82)
Q Consensus 14 ~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg-~gfHih~~~ 51 (82)
+|+|+|+|+|.. ++ +.|+++|+||+|| .|||||.+-
T Consensus 26 ~v~G~v~f~q~~-~g-v~v~~~l~GL~pG~HGfHIHe~G 62 (164)
T 2aqp_A 26 KDVGTVTITESN-YG-LVFTPDLQGLSAGLHGFHIHENP 62 (164)
T ss_dssp EEEEEEEEEEET-TE-EEEEEEECSCCSEEECEEEESSS
T ss_pred ceEEEEEEEEcC-Cc-EEEEEEEeCCCCCceeEEEecCC
Confidence 799999999985 33 9999999999999 499999875
No 23
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi}
Probab=98.48 E-value=1.8e-07 Score=66.55 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=37.5
Q ss_pred eeEEEEecC---C-CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 4 IKAVCVLNN---E-PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 4 ~kAVcVL~G---~-~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
.++.+.|.. + +|+|+|+|+|.. + .+.|+++|+||+||. |||||.+-
T Consensus 25 ~~~~~~l~~~~g~~~v~G~v~f~q~~-~-gv~v~~~l~GL~pG~HGfHIHe~G 75 (177)
T 1z9n_A 25 IVVPVQQLDPQNGNKDVGTVEITESA-Y-GLVFTPKLHDLAHGLHGFHIHEKP 75 (177)
T ss_dssp EEEEEEECCTTTCCEEEEEEEEEEET-T-EEEEEEEECSCCSEEECEEEESSS
T ss_pred ceEEEEEecCCCCCccEEEEEEEEcC-C-cEEEEEEEeCCCCCceeEEEecCC
Confidence 456666653 3 799999999985 3 399999999999994 99999875
No 24
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*
Probab=98.48 E-value=1.7e-07 Score=65.29 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=32.1
Q ss_pred CeEEEEEEEEcCCCCCeEEEEEEecCCCCc-CCceeeeh
Q psy967 14 PVKGTIFFTQEHADSPVKVTGEIQGLEEDG-GLNLMNFT 51 (82)
Q Consensus 14 ~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~-gfHih~~~ 51 (82)
+|+|+|+|+|.. ++ +.|+++|+||+||. |||||.+-
T Consensus 17 ~v~G~v~f~q~~-~g-v~v~~~l~GL~pG~hGfHIHe~G 53 (156)
T 1eqw_A 17 ENIGEITVSETP-YG-LLFTPHLNGLTPGIHGFHVHTNP 53 (156)
T ss_dssp EEEEEEEEEEET-TE-EEEEEEECSCCSEEECEEEESSS
T ss_pred ceEEEEEEEEcC-Cc-EEEEEEEeCCCCCceeEEECCCC
Confidence 799999999985 33 99999999999994 99999875
No 25
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A
Probab=98.45 E-value=1.8e-07 Score=64.97 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=32.1
Q ss_pred CeEEEEEEEEcCCCCCeEEEEEEecCCCC-cCCceeeeh
Q psy967 14 PVKGTIFFTQEHADSPVKVTGEIQGLEED-GGLNLMNFT 51 (82)
Q Consensus 14 ~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg-~gfHih~~~ 51 (82)
+|+|+|+|+|.. ++ +.|+++|+||+|| +|||||.+-
T Consensus 17 ~v~G~v~f~q~~-~g-v~v~~~l~GL~pG~hGfHIHe~G 53 (154)
T 1eso_A 17 QSIGSVTITETD-KG-LEFSPDLKALPPGEHGFHIHAKG 53 (154)
T ss_dssp EEEEEEEEEEET-TE-EEEEEEECSCCSEEECEEEESSS
T ss_pred ccEEEEEEEEcC-CC-EEEEEEEECCCCCcccEEEcCCC
Confidence 799999999985 33 9999999999999 499999875
No 26
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=96.84 E-value=0.00026 Score=45.69 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=22.5
Q ss_pred eehhhHHhhhhhhc-ceeeCCCCcee
Q psy967 49 NFTVFRAILDYYKG-QVIKCPPSVSE 73 (82)
Q Consensus 49 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 73 (82)
+..+||.||+||++ |.+.||+++.+
T Consensus 49 dp~~F~~ILnflR~~G~l~~p~~~~~ 74 (100)
T 1t1d_A 49 NRPSFDAILYFYQSGGRLRRPVNVPL 74 (100)
T ss_dssp CSTTHHHHHHHHHTTSCCCCCTTSCH
T ss_pred ChHHHHHHHHHHhcCCcccCCCCCCH
Confidence 56899999999998 99999999864
No 27
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=96.60 E-value=0.00043 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.4
Q ss_pred eehhhHHhhhhhhcceeeCCCCcee
Q psy967 49 NFTVFRAILDYYKGQVIKCPPSVSE 73 (82)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (82)
+..+|+.||+||++|.+.||+++.+
T Consensus 47 dp~~F~~ILnflR~g~l~~p~~~~~ 71 (105)
T 1nn7_A 47 DPDIFRHILNFYRTGKLHYPRHECI 71 (105)
T ss_dssp CTTTHHHHHHHHHHSCBCCCTTSCH
T ss_pred CcHHHHHHHHHHhcCCCCCCCCcCH
Confidence 4589999999999999999999864
No 28
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.38 E-value=0.00071 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=22.7
Q ss_pred eehhhHHhhhhhhcceeeCCCCcee
Q psy967 49 NFTVFRAILDYYKGQVIKCPPSVSE 73 (82)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (82)
...+|+.||+||++|.+.||+++.+
T Consensus 53 dp~~F~~ILnylR~G~l~~p~~~~~ 77 (115)
T 3kvt_A 53 HPGVFAQIINYYRSGKLHYPTDVCG 77 (115)
T ss_dssp CTTTHHHHHHHHHHSCBCCCSSSCH
T ss_pred ChHHHHHHHHHhcCCCCCCCCcccH
Confidence 5689999999999999999998864
No 29
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=96.36 E-value=0.00078 Score=44.93 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.4
Q ss_pred eehhhHHhhhhhhcceeeCCCCcee
Q psy967 49 NFTVFRAILDYYKGQVIKCPPSVSE 73 (82)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (82)
...+|+.||+||++|.+.||+++.+
T Consensus 60 dp~~F~~ILnflR~G~l~~p~~~~~ 84 (124)
T 1s1g_A 60 DPEVFRCVLNFYRTGKLHYPRYECI 84 (124)
T ss_dssp CHHHHHHHHHHHHHSCBCCCTTSCH
T ss_pred ChHHHHHHHHHHhcCCCCCCCCcCH
Confidence 5689999999999999999999853
No 30
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=96.24 E-value=0.00096 Score=42.79 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.5
Q ss_pred eehhhHHhhhhhhcceeeCCCCcee
Q psy967 49 NFTVFRAILDYYKGQVIKCPPSVSE 73 (82)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (82)
...+|+.||+||++|.+.||+.+.+
T Consensus 57 dp~~F~~IL~~lr~g~l~~p~~~~~ 81 (107)
T 3drz_A 57 DPTYFGPVLNYLRHGKLVINKDLAE 81 (107)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTSCH
T ss_pred ChHHHHHHHHHhCCCeeCCCCCCCH
Confidence 5589999999999999999998764
No 31
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=96.19 E-value=0.001 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.4
Q ss_pred eehhhHHhhhhhhcceeeCCCCcee
Q psy967 49 NFTVFRAILDYYKGQVIKCPPSVSE 73 (82)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (82)
+..+|+.||+||++|.+.||+++.+
T Consensus 82 dp~~F~~ILnflR~G~l~~p~~~~~ 106 (140)
T 2nz0_B 82 DPEVFRCVLNFYRTGKLHYPRYECI 106 (140)
T ss_dssp CHHHHHHHHHHHHHSSBCCCTTSCH
T ss_pred CcHHHHHHHHHHhcCCcCCCCCcCH
Confidence 4589999999999999999999754
No 32
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.23 E-value=0.0041 Score=45.04 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=23.0
Q ss_pred eehhhHHhhhhhhcceeeCCCCceec
Q psy967 49 NFTVFRAILDYYKGQVIKCPPSVSER 74 (82)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (82)
...+|+.||+||++|.+.||+.+.+.
T Consensus 63 DP~~F~~ILnyLRtG~L~lP~~~~~~ 88 (202)
T 3drx_A 63 DPTYFGPVLNYLRHGKLVINKDLAEE 88 (202)
T ss_dssp CSTTHHHHHHHHHHSCCCCCTTSCHH
T ss_pred ChHHHHHHHHHhcCCccCCCCCCCHH
Confidence 45899999999999999999998753
No 33
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=92.24 E-value=0.036 Score=43.72 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.7
Q ss_pred eehhhHHhhhhhhc-ceeeCCCCceec
Q psy967 49 NFTVFRAILDYYKG-QVIKCPPSVSER 74 (82)
Q Consensus 49 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 74 (82)
+..+||.||+||++ |.+.||+.+.+.
T Consensus 100 ~~~~F~~IL~~~r~~g~l~~p~~~~~~ 126 (514)
T 2r9r_B 100 NRPSFDAILYYYQSGGRLRRPVNVPLD 126 (514)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCTTSCHH
T ss_pred ChHHHHHHHHHHhcCCccccCCcccHH
Confidence 45799999999999 999999998653
No 34
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=47.05 E-value=23 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCCeEEEEEEecCCC-CcCCceeeehhhHHhhhhhhc
Q psy967 18 TIFFTQEHADSPVKVTGEIQGLEE-DGGLNLMNFTVFRAILDYYKG 62 (82)
Q Consensus 18 tV~FtQ~~~~~~V~ItG~I~GL~P-g~gfHih~~~~~~~~~~~~~~ 62 (82)
.|.|++.. ++.+.|+-...|=.| ..+.-|.+..++||+||-|=|
T Consensus 160 ~I~~~~~p-~g~l~i~~s~~G~~p~~~~~~I~s~~l~~All~~ylG 204 (246)
T 4doi_A 160 SILFALSP-TGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIG 204 (246)
T ss_dssp EEEEEECT-TSEEEEEEESSSCCCSSCSEEEECHHHHHHHHHHHHS
T ss_pred EEEEEEeC-CCcEEEEEecCCccccccccccCCHHHHHHHHHHhcC
Confidence 57899985 445666555567433 234569999999999999953
No 35
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=39.65 E-value=34 Score=24.09 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCCeEEEEEEecCCCCcCCceeeehhhHHhhhhhhcc
Q psy967 18 TIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRAILDYYKGQ 63 (82)
Q Consensus 18 tV~FtQ~~~~~~V~ItG~I~GL~Pg~gfHih~~~~~~~~~~~~~~~ 63 (82)
.|.|++..+.+...|+-.+.|-..+ ..-|.+..++||+||-|=+|
T Consensus 143 ~I~~~~~p~~G~L~i~~s~~G~~~~-~~~I~~~~l~~All~~yl~G 187 (208)
T 4dok_A 143 VITYHFSAKDGICEIGFETEGKEEE-KLKVENANVVGMMQRWYLSG 187 (208)
T ss_dssp EEEEEECSSSCCEEEEEECTTSCCE-EEEECCHHHHHHHHHHHSCT
T ss_pred EEEEEEeCCCCeEEEEEEeCCEecc-ccccCCHHHHHHHHHHeeCC
Confidence 5789998765566666655555322 13588999999999999744
No 36
>1jyo_A SICP; bacterial pathogenesis, infectious disease, virulence factor, type III secretion, chaperone, unfolded; 1.90A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=34.25 E-value=45 Score=22.19 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=30.4
Q ss_pred EEEec-CCCeEEEEEEEEcCCCCCeEEEEEEecCCCCcCCceeeehhhHHhh
Q psy967 7 VCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRAIL 57 (82)
Q Consensus 7 VcVL~-G~~VsGtV~FtQ~~~~~~V~ItG~I~GL~Pg~gfHih~~~~~~~~~ 57 (82)
.|.|. .+++ .|.|+-++ +...+.|.|..+||.. ...+||++|
T Consensus 26 ~C~Ll~D~~~--~Isie~~~--~~~~l~~~ig~lp~~~-----~~~i~~~~L 68 (130)
T 1jyo_A 26 QCLLLLDSDI--FTSIEAKD--DIWLLNGMIIPLSPVC-----GDSIWRQIM 68 (130)
T ss_dssp EEEEEETTTE--EEEEEEET--TEEEEEEEEEECCTTC-----CHHHHHHHH
T ss_pred cEEEEECCce--EEEEEecC--CeEEEEEEEecCCCcc-----hHHHHHHHH
Confidence 34444 2244 46666633 4689999999999987 788999998
No 37
>1vd0_A Head decoration protein; virus/viral protein, capsid protein, structural genomics, NPPSFA; NMR {Enterobacteria phage lambda} SCOP: b.85.2.1
Probab=33.23 E-value=5.9 Score=26.35 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=14.1
Q ss_pred Hhhhhhhcceee-----CCCCce
Q psy967 55 AILDYYKGQVIK-----CPPSVS 72 (82)
Q Consensus 55 ~~~~~~~~~~~~-----~~~~~~ 72 (82)
+-|.|||+|.+| -|+||+
T Consensus 70 ~~lt~YKsG~f~~~av~WPeSv~ 92 (109)
T 1vd0_A 70 TTLTFYKSGTFRYEDVLWPEAAS 92 (109)
T ss_dssp SCEEEECSBCCCTTTSCCCTTCC
T ss_pred ceeEEEeeceeEeeeccCcchhh
Confidence 678999999875 577763
No 38
>1c5e_A Head decoration protein; bacteriophage lambda, head protein D, protein crystal struct virus assembly, phage display, viral protein; 1.10A {Enterobacteria phage lambda} SCOP: b.85.2.1 PDB: 1tcz_A
Probab=32.57 E-value=6.7 Score=25.53 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=14.2
Q ss_pred Hhhhhhhcceee-----CCCCce
Q psy967 55 AILDYYKGQVIK-----CPPSVS 72 (82)
Q Consensus 55 ~~~~~~~~~~~~-----~~~~~~ 72 (82)
+-|.|||+|.+| -|+||+
T Consensus 56 ~~~t~YKsG~F~~~al~WP~Sv~ 78 (95)
T 1c5e_A 56 TTLTFYKSGTFRYEDVLWPEAAS 78 (95)
T ss_dssp SEEEEECEEEECTTTSCCCTTCC
T ss_pred cceEEEEeceeeeeeccCccccc
Confidence 678999999976 577764
No 39
>1td4_A Head decoration protein; SHP, viral protein; 1.50A {Enterobacteria phage P21} SCOP: b.85.2.1 PDB: 1td3_A 1td0_A
Probab=29.95 E-value=9 Score=25.66 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=14.0
Q ss_pred HHhhhhhhcceee-----CCCCc
Q psy967 54 RAILDYYKGQVIK-----CPPSV 71 (82)
Q Consensus 54 ~~~~~~~~~~~~~-----~~~~~ 71 (82)
.+-|.|||+|.+| -|+||
T Consensus 73 ~~~~t~YKsG~F~~~al~WPeSv 95 (115)
T 1td4_A 73 ETALTYYKSGTFATEAIHWPESV 95 (115)
T ss_dssp CSEEEEECEEEEEGGGSCCCTTC
T ss_pred CcceEEEEeceeeeeeccCchhh
Confidence 4558999999986 46666
No 40
>2mcm_A Macromomycin; apoprotein; 1.50A {Streptomyces macromomyceticus} SCOP: b.1.7.1
Probab=28.75 E-value=36 Score=22.49 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=14.4
Q ss_pred CeEEEEEEecCCCCcCCce
Q psy967 29 PVKVTGEIQGLEEDGGLNL 47 (82)
Q Consensus 29 ~V~ItG~I~GL~Pg~gfHi 47 (82)
...|+-+.+||.||.+.|+
T Consensus 15 Gq~VtV~~tGl~p~~~y~v 33 (112)
T 2mcm_A 15 GQTVTVSATGLTPGTVYHV 33 (112)
T ss_dssp TEEEEEEEESCCTTCEEEE
T ss_pred CCEEEEEEEccCCCCeEEE
Confidence 4667778889999985554
No 41
>1noa_A Neocarzinostatin; antibacterial protein; 1.50A {Streptomyces carzinostaticus} SCOP: b.1.7.1 PDB: 1nco_A 1o5p_A* 1j5h_A 1j5i_A* 2g0k_A 2g0l_A* 2cbq_A* 2cbo_A* 2cbm_A* 2cbt_A*
Probab=27.18 E-value=35 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=13.8
Q ss_pred CeEEEEEEecCCCCcCCce
Q psy967 29 PVKVTGEIQGLEEDGGLNL 47 (82)
Q Consensus 29 ~V~ItG~I~GL~Pg~gfHi 47 (82)
...|+-+.+||.||.+.|+
T Consensus 16 Gq~VtV~~tGl~p~~~y~v 34 (113)
T 1noa_A 16 GTVVKVAGAGLQAGTAYDV 34 (113)
T ss_dssp TCEEEEEEESCCTTCEEEE
T ss_pred CCEEEEEEEccCCCCeEEE
Confidence 3567777789999985554
No 42
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3
Probab=22.62 E-value=27 Score=27.41 Aligned_cols=14 Identities=43% Similarity=0.899 Sum_probs=11.7
Q ss_pred hhhhcceeeCCCCc
Q psy967 58 DYYKGQVIKCPPSV 71 (82)
Q Consensus 58 ~~~~~~~~~~~~~~ 71 (82)
.||++++|.||+-.
T Consensus 450 ~~~~g~~I~CP~~~ 463 (478)
T 1lml_A 450 AFEGGGYITCPPYV 463 (478)
T ss_dssp SBCTTCEEECCCHH
T ss_pred cccCCCEEECcChH
Confidence 57899999999854
No 43
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU genomics, structural genomics consortium, SGC, hydrolase; 1.54A {Homo sapiens}
Probab=22.10 E-value=29 Score=24.85 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=7.0
Q ss_pred hhHHhhhhhhcceee
Q psy967 52 VFRAILDYYKGQVIK 66 (82)
Q Consensus 52 ~~~~~~~~~~~~~~~ 66 (82)
+++++|+||+.|+++
T Consensus 268 iy~~~~~~~~~~~~~ 282 (287)
T 2b49_A 268 VCEAILRVYEEGLVQ 282 (287)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCCC
Confidence 556666666666543
No 44
>3qds_A Boletus edulis lectin; mushroom, T-antigen, carbohydrate, S binding, sugar binding protein; 1.15A {Boletus edulis} SCOP: b.97.1.2 PDB: 3qdt_A* 3qdu_A* 3qdv_A* 3qdw_A* 3qdx_A* 3qdy_A* 1x99_A* 1xi0_A
Probab=21.07 E-value=2e+02 Score=19.67 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=29.1
Q ss_pred CCCeEEEEEEEEcCCCCCeEEE-E---------EEecCCCCcCCceeeehhhHHhhhhhhcc
Q psy967 12 NEPVKGTIFFTQEHADSPVKVT-G---------EIQGLEEDGGLNLMNFTVFRAILDYYKGQ 63 (82)
Q Consensus 12 G~~VsGtV~FtQ~~~~~~V~It-G---------~I~GL~Pg~gfHih~~~~~~~~~~~~~~~ 63 (82)
|.+-+|.++|..+. +....|. | .+++|.|+. |.-...=+||..|
T Consensus 48 gSGTSG~LRf~~~~-Ge~f~v~~GVHNYk~WcDIvt~L~~~~-------T~~~~~PeYY~~g 101 (143)
T 3qds_A 48 GSGTSGVLRFMSDK-GELITVAVGVHNYKRWCDVVTGLKPEE-------TALVINPQYYNNG 101 (143)
T ss_dssp SSSCEEEEEEEETT-CCEEEEEEEEETTEEEEEEECSCCTTC-------CHHHHGGGGSTTC
T ss_pred cCCcceEEEEEcCC-CCEEEEEEccccCCcceeEEcccCCCc-------cceecChhhccCc
Confidence 44899999997765 4444443 2 458899954 4445556899766
No 45
>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} SCOP: b.121.3.0
Probab=20.93 E-value=79 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEecCC---CeE-E------EEEEEEcCCCCCeEEEEE
Q psy967 6 AVCVLNNE---PVK-G------TIFFTQEHADSPVKVTGE 35 (82)
Q Consensus 6 AVcVL~G~---~Vs-G------tV~FtQ~~~~~~V~ItG~ 35 (82)
-+|.|+.. -|+ | -|+|.-...++||+|+|+
T Consensus 67 ~lAtLk~s~~p~vsl~g~ei~pPVtf~L~~GSGPV~isGq 106 (110)
T 3t30_B 67 TIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQ 106 (110)
T ss_dssp EEEEEBTTTBCEEEEEEEEECSSEEEEEEESCCCEEEEEE
T ss_pred EEEEEeccccccEEcCCeEeCCCEEEEEEecCCCEEeeee
Confidence 46778753 233 3 256666566789999986
No 46
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=20.90 E-value=24 Score=18.19 Aligned_cols=8 Identities=50% Similarity=1.036 Sum_probs=6.3
Q ss_pred eeCCCCce
Q psy967 65 IKCPPSVS 72 (82)
Q Consensus 65 ~~~~~~~~ 72 (82)
|+||.|..
T Consensus 2 ircpkswk 9 (30)
T 2l3i_A 2 IRCPKSWK 9 (30)
T ss_dssp CCSSSCSC
T ss_pred CCCCcchh
Confidence 78998864
No 47
>1vc3_A L-aspartate-alpha-decarboxylase light chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_A
Probab=20.72 E-value=14 Score=18.77 Aligned_cols=13 Identities=38% Similarity=0.398 Sum_probs=10.7
Q ss_pred eeeehhhHHhhhh
Q psy967 47 LMNFTVFRAILDY 59 (82)
Q Consensus 47 ih~~~~~~~~~~~ 59 (82)
||-|+|=+|=|+|
T Consensus 10 iHratVT~a~L~Y 22 (26)
T 1vc3_A 10 IHRATVTQADLHY 22 (26)
T ss_dssp EEEEECCEEETTC
T ss_pred hcceEEecccccc
Confidence 6888888888887
Done!