RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy967
(82 letters)
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase,
antioxidant, oxidoreductase, NEM disulfide bond,
metal-binding; 1.10A {Caenorhabditis elegans} PDB:
3kbf_A
Length = 157
Score = 58.5 bits (142), Expect = 8e-13
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+ +AV VL E V GTI+ TQ+ + + GEI+GL
Sbjct: 1 SNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTP 39
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation,
amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A
{Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A
1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A*
3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A*
3gzp_A 1uxl_A ...
Length = 153
Score = 55.8 bits (135), Expect = 8e-12
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+G+ E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTE 40
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel,
antioxidant, copper, cytoplasm, metal- binding,
oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A
Length = 154
Score = 55.1 bits (133), Expect = 2e-11
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 1 MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
MP KAVCVL + V GT+FF Q+ SPV V+GE+QGL +
Sbjct: 1 MP-AKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTK 39
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide,
oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP:
b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A
1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A
Length = 154
Score = 55.1 bits (133), Expect = 2e-11
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG 43
++AV VL + V G + F Q P V+ EI G +
Sbjct: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNA 42
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A
{Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A
Length = 156
Score = 54.2 bits (131), Expect = 4e-11
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 2 PAIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+KAVCV+ VKG + FTQE + PV V E GL+
Sbjct: 2 SNMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKA 42
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant,
copper, metal-binding, oxidoreductase, zinc; 1.20A
{Cryptococcus liquefaciens}
Length = 168
Score = 54.3 bits (131), Expect = 4e-11
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG 43
IKA+ VL + PV+G I FTQE + PV V+GEI+ ++ +
Sbjct: 5 IKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANA 45
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein,
glycoprotein, metal binding protein; HET: NAG MAN;
2.11A {Bombyx mori} PDB: 2e46_A
Length = 156
Score = 53.5 bits (129), Expect = 7e-11
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+A+ VL+ E ++G I FTQ D V V G I GL
Sbjct: 8 SRAIAVLSTETIRGNITFTQV-QDGKVHVQGGITGLPP 44
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor), greek KEY beta-barrel, amyloid filaments,
ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A
Length = 152
Score = 51.9 bits (125), Expect = 3e-10
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
AI AVCVL + PV GTI +E V VTGEI GL
Sbjct: 1 AIHAVCVLKGDSPVTGTIHLKEE--GDMVTVTGEITGLTP 38
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase,
metal-binding; 2.37A {Potentilla atrosanguinea}
Length = 152
Score = 50.7 bits (122), Expect = 9e-10
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 5 KAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
K V VL+ +E V GTI FTQE D P VTG I GL+
Sbjct: 3 KGVAVLSSSEGVAGTILFTQE-GDGPTTVTGNISGLKP 39
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1
Length = 150
Score = 50.4 bits (121), Expect = 1e-09
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+KAVCVL + VKG + F Q+ + V V G+I+GL +
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQQ-DEGAVSVEGKIEGLTD 38
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase,
antioxidant, metal-binding, DIS bond, transit peptide;
1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A
3hog_A 1srd_A
Length = 154
Score = 49.2 bits (118), Expect = 3e-09
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
KAV VL N V+G + +Q+ D P V I GL
Sbjct: 2 TKKAVAVLKGNSNVEGVVTLSQD-DDGPTTVNVRITGLAP 40
>1do5_A Human copper chaperone for superoxide dismutase domain II;
beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1
Length = 154
Score = 46.9 bits (112), Expect = 3e-08
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 5 KAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
AV +L V+G + F Q + G I GLE
Sbjct: 5 AAVAILGGPGTVQGVVRFLQL-TPERCLIEGTIDGLEP 41
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation,
oxidoreductase, heparin binding, heparin-BIND oxidative
stress, antioxidant; 1.70A {Homo sapiens}
Length = 222
Score = 43.6 bits (102), Expect = 8e-07
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 3 AIKAVCVL--------NNEPVKGTIFFTQEHADSPVKVTGEIQGL 39
+ A C + V G + F Q + + ++G
Sbjct: 40 TLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGF 84
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn
SOD, SOD-like, superoxide dismutase mutants, STRU
genomics, unknown function; 1.60A {Bacillus subtilis}
PDB: 1xtl_B 1s4i_B 1u3n_A
Length = 175
Score = 42.3 bits (100), Expect = 1e-06
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 5 KAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEE 41
V ++N E G I + D + + L
Sbjct: 22 HHVQLVNREGKAVGFIEIKES-DDEGLDIHISANSLRP 58
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria
MENI oxidoreductase; 1.30A {Neisseria meningitidis}
PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A
Length = 164
Score = 42.0 bits (99), Expect = 2e-06
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
++ + +N GT+ T+ + + T ++QGL
Sbjct: 15 KVQQLDPVNGNKDVGTVTITES--NYGLVFTPDLQGLSA 51
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A
{Saccharomyces cerevisiae} SCOP: b.1.8.1
Length = 140
Score = 41.0 bits (96), Expect = 3e-06
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 12/50 (24%)
Query: 5 KAVCVLN-----------NEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG 43
AV +L + V+G Q ++ + G+ E G
Sbjct: 2 SAVAILETFQKYTIDQKKDTAVRGLARIVQV-GENKTLFDITVNGVPEAG 50
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu,
protein-subunit interaction recognition, protein
electrostatic; 1.5A {Photobacterium leiognathi} SCOP:
b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A
1ibb_A 1ibf_A
Length = 151
Score = 38.8 bits (91), Expect = 3e-05
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+K + + GTI +Q V E+ L
Sbjct: 5 VKMTDLQTGK-PVGTIELSQN--KYGVVFIPELADLTP 39
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase;
HET: HEM; 1.50A {Haemophilus ducreyi}
Length = 177
Score = 38.2 bits (89), Expect = 5e-05
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
++ + N GT+ T+ + T ++ L
Sbjct: 28 PVQQLDPQNGNKDVGTVEITES--AYGLVFTPKLHDLAH 64
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella
abortus}
Length = 154
Score = 36.9 bits (86), Expect = 1e-04
Identities = 4/40 (10%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+A+ + GT+ ++ + ++ L
Sbjct: 6 KMYEALPTGPGK-EVGTVVISEA--PGGLHFKVNMEKLTP 42
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase;
2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB:
2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*
Length = 156
Score = 35.4 bits (82), Expect = 5e-04
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 4 IKAVCVL--NNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+K L G I ++ + T + GL
Sbjct: 5 VKMNDALSSGTGENIGEITVSET--PYGLLFTPHLNGLTP 42
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric
superoxide dismutase, copper enzymes, enzyme evolution,
X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB:
2k4w_A
Length = 154
Score = 35.0 bits (81), Expect = 6e-04
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+ V G++ T+ D ++ + +++ L
Sbjct: 6 EMNLVTSQGVGQSIGSVTITET--DKGLEFSPDLKALPP 42
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant,
metal binding, greek KEY barrel, oxidoreductase; 1.63A
{Mycobacterium tuberculosis} SCOP: b.1.8.1
Length = 208
Score = 33.3 bits (76), Expect = 0.003
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 2 PAIKAVCVLNNE--PVKGTIFFTQEHADSPVKV-TGEIQGLEE 41
A L T F + + V + T + L
Sbjct: 36 GAQSLTSTLTAPDGTKVATAKFEFANGYATVTIATTGVGKLTP 78
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 30.5 bits (69), Expect = 0.023
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
VF I++YY+ + P V
Sbjct: 55 GVFAQIINYYRSGKLHYPTDVCGPL 79
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 30.0 bits (68), Expect = 0.032
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
+FR IL++Y+ + P A
Sbjct: 49 DIFRHILNFYRTGKLHYPRHECISA 73
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 29.4 bits (66), Expect = 0.074
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
VFR +L++Y+ + P A
Sbjct: 84 EVFRCVLNFYRTGKLHYPRYECISA 108
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 29.0 bits (65), Expect = 0.091
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
VFR +L++Y+ + P A
Sbjct: 62 EVFRCVLNFYRTGKLHYPRYECISA 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 0.76
Identities = 24/121 (19%), Positives = 33/121 (27%), Gaps = 55/121 (45%)
Query: 8 CVLNNEPVKGTIFFTQEH----------------ADSPVKVTGEIQGLEE---------- 41
V+NN PV TI F E D +K + + E
Sbjct: 1664 IVINN-PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 42 DGGLNLMNFT----------VFRAILDYYKGQVIKCPP-------SVSE------RAGAL 78
G L+ FT F + KG + P S+ E A +
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKS--KGLI---PADATFAGHSLGEYAALASLADVM 1777
Query: 79 S 79
S
Sbjct: 1778 S 1778
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 26.1 bits (58), Expect = 0.91
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
T F +L+Y + + ++E
Sbjct: 59 TYFGPVLNYLRHGKLVINKDLAEEG 83
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 25.8 bits (56), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 51 TVFRAILDYYK-GQVIKCPPSV 71
F AIL YY+ G ++ P +V
Sbjct: 102 PSFDAILYYYQSGGRLRRPVNV 123
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55,
potassium channel domain T1, pentameric assembly,
HOST-virus interaction, nucleus; 3.11A {Homo sapiens}
PDB: 3dry_A
Length = 202
Score = 25.3 bits (55), Expect = 2.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
T F +L+Y + + ++E
Sbjct: 65 TYFGPVLNYLRHGKLVINKDLAEEG 89
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 25.3 bits (56), Expect = 2.4
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 15/47 (31%)
Query: 15 VKGTIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRAILDYYK 61
VKG T H + PV++ G + L +++Y K
Sbjct: 158 VKG---LTYLHPEIPVEIRGTYKALGHP------------VMINYLK 189
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton
transport, membrane protein; 1.51A {Aplysia
californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A
1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Length = 100
Score = 24.7 bits (54), Expect = 2.7
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 51 TVFRAILDYYK-GQVIKCPPSVSERA 75
F AIL +Y+ G ++ P +V
Sbjct: 51 PSFDAILYFYQSGGRLRRPVNVPLDV 76
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 24.6 bits (54), Expect = 4.2
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 15/47 (31%)
Query: 15 VKGTIFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRAILDYYK 61
VKG FT+ D P + G +GL + ++ Y K
Sbjct: 181 VKG---FTKLRLDLPENIRGTYEGLASE------------QMISYLK 212
>2p8g_A PAD, phenolic acid decarboxylase; 2635953, phenolic acid
decarboxylase (PAD), structural genom joint center for
structural genomics, JCSG; 1.36A {Bacillus subtilis}
PDB: 3nad_A
Length = 162
Score = 24.5 bits (53), Expect = 4.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 10 LNNEPVKGTIFFTQEHADSPVKVTG 34
N + + G IFF + + P
Sbjct: 77 PNEKRMHGIIFFPKWVHEHPEITVC 101
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA
synthetase, enzyme mechanism, enantioselectivity,
ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A
1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Length = 143
Score = 24.1 bits (52), Expect = 4.9
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 28 SPVKVTGEIQGLEEDGGLNLMNFTVFRAILDYYKGQVIKC 67
P + + + GL F V +A YYK I C
Sbjct: 90 KPSVAMDILNRVYQ--GLKERGFNVGKAPFGYYKAFKISC 127
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase;
1.55A {Arabidopsis thaliana}
Length = 246
Score = 24.0 bits (51), Expect = 7.4
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 16 KGT-IFFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSER 74
G+ I F S + + E G + N + A+L+ G+ P +
Sbjct: 157 PGSSILFALSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSV 216
Query: 75 AGALSD 80
A LS
Sbjct: 217 AERLSQ 222
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 23.5 bits (51), Expect = 9.5
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 17/52 (32%)
Query: 14 PVKGTIFFTQEHAD-------------SPVKVTGEIQGLEEDGGLNLMNFTV 52
K H D PV TG QG + G ++++ +
Sbjct: 73 KRKRAP----IHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNL 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.402
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,232,311
Number of extensions: 61352
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 39
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)