RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy967
(82 letters)
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 50.4 bits (120), Expect = 5e-10
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL E
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTE 40
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 153
Score = 47.4 bits (112), Expect = 6e-09
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG 43
++AV VL + V G + F Q P V+ EI G +
Sbjct: 1 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNA 41
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke
(Schistosoma mansoni) [TaxId: 6183]}
Length = 156
Score = 47.4 bits (112), Expect = 7e-09
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGL 39
+KAVCV+ VKG + FTQE + PV V E GL
Sbjct: 4 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGL 40
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 150
Score = 43.2 bits (101), Expect = 2e-07
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+KAVCVL + VKG + F Q+ + V V G+I+GL +
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQQ-DEGAVSVEGKIEGLTD 38
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 154
Score = 39.7 bits (92), Expect = 4e-06
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 5 KAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQG 38
KAV VL V+G + TQE D P V I G
Sbjct: 4 KAVAVLKGTSNVEGVVTLTQE-DDGPTTVNVRISG 37
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 38.5 bits (89), Expect = 2e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 6 AVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGL 39
AV +L V+G + F Q + G I GL
Sbjct: 6 AVAILGGPGTVQGVVRFLQL-TPERCLIEGTIDGL 39
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 140
Score = 37.6 bits (87), Expect = 2e-05
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 12/50 (24%)
Query: 5 KAVCVLN-----------NEPVKGTIFFTQEHADSPVKVTGEIQGLEEDG 43
AV +L + V+G Q ++ + G+ E G
Sbjct: 2 SAVAILETFQKYTIDQKKDTAVRGLARIVQV-GENKTLFDITVNGVPEAG 50
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Actinobacillus pleuropneumoniae [TaxId: 715]}
Length = 155
Score = 33.8 bits (77), Expect = 7e-04
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 2 PAIKAVCVL---NNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+ V L GT+ T+ + T + GL +
Sbjct: 2 KLVVQVQQLDPVKGNKDVGTVEITES--AYGLVFTPHLHGLAQ 42
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Photobacterium leiognathi [TaxId: 553611]}
Length = 151
Score = 32.7 bits (74), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEE 41
+K + +PV GTI +Q V E+ L
Sbjct: 5 VKMTDLQTGKPV-GTIELSQN--KYGVVFIPELADLTP 39
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia
coli [TaxId: 562]}
Length = 154
Score = 30.8 bits (69), Expect = 0.009
Identities = 4/27 (14%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 15 VKGTIFFTQEHADSPVKVTGEIQGLEE 41
G++ T+ D ++ + +++ L
Sbjct: 18 SIGSVTITET--DKGLEFSPDLKALPP 42
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella
typhimurium [TaxId: 90371]}
Length = 155
Score = 30.4 bits (68), Expect = 0.011
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 15 VKGTIFFTQEHADSPVKVTGEIQGLEE 41
G I ++ + T + GL
Sbjct: 18 NIGEITVSET--PYGLLFTPHLNGLTP 42
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 28.3 bits (63), Expect = 0.048
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
VF I++YY+ + P V
Sbjct: 52 GVFAQIINYYRSGKLHYPTDVCGPL 76
>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 130
Score = 27.9 bits (62), Expect = 0.095
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLE 40
P ++++ V N E + TIF + + + +++ E
Sbjct: 35 PYLESIAVYNEEKEEVTIFAVNRDMEDALLLECDVRSFE 73
>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase
{Clostridium thermocellum [TaxId: 1515]}
Length = 131
Score = 27.2 bits (60), Expect = 0.15
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLE 40
I++V + N E + TIF + + + +++G++
Sbjct: 37 TDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMK 75
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 26.0 bits (57), Expect = 0.41
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 51 TVFRAILDYYKGQVIKCPPSVSERA 75
+FR IL++Y+ + P A
Sbjct: 49 DIFRHILNFYRTGKLHYPRHECISA 73
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea
hare (Aplysia californica) [TaxId: 6500]}
Length = 100
Score = 24.0 bits (52), Expect = 2.0
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 52 VFRAILDYYK-GQVIKCPPSVSERA 75
F AIL +Y+ G ++ P +V
Sbjct: 52 SFDAILYFYQSGGRLRRPVNVPLDV 76
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 53
Score = 23.2 bits (50), Expect = 2.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 43 GGLNLMNFTVFRAILDY 59
G + L+ T +R ILD+
Sbjct: 28 GAVGLVWATDWRLILDW 44
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 23.9 bits (51), Expect = 2.3
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 15 VKGTIFFTQEHADSPVKVTGEIQGL 39
T F A+ VT G+
Sbjct: 14 KVATAKFEF--ANGYATVTIATTGV 36
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 277
Score = 23.1 bits (49), Expect = 5.2
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 20 FFTQEHADSPVKVTGEIQGLEEDGGLNLMNFTVFRAILDYYKGQVIKCPPSVSERAGALS 79
++T H S + + E D L L + + + + + V E L
Sbjct: 196 WYTSTHPHSVFRQGLKAAITEGDLRLTLADGLFGQRAGN--GETLQRQLRDVEELLDILQ 253
Query: 80 DT 81
Sbjct: 254 TR 255
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 23.0 bits (49), Expect = 6.0
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 42 DGGLNLMNFTVFRAILDYYKGQVIKCPP 69
+ F + K + P
Sbjct: 438 RPSDSSPPFKELLLAEKWAKMNKLPFPK 465
>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain
{Human papillomavirus type 16 [TaxId: 333760]}
Length = 200
Score = 22.7 bits (49), Expect = 6.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 59 YYKGQVIKCPPSV 71
+ GQVI CP SV
Sbjct: 187 HAGGQVILCPTSV 199
>d2gc9a1 b.60.1.6 (A:1-178) P-coumaric acid decarboxylase, pdc
{Lactobacillus plantarum [TaxId: 1590]}
Length = 178
Score = 22.4 bits (48), Expect = 7.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 10 LNNEPVKGTIFFTQEHADSPVKVTG 34
N + + GTIFF + + P
Sbjct: 83 PNEKKLHGTIFFPKWVEEHPEITVT 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.402
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,111
Number of extensions: 11433
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 23
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)