Query psy9670
Match_columns 103
No_of_seqs 94 out of 96
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 16:38:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k21_A Potassium voltage-gated 89.2 0.35 1.2E-05 35.1 3.6 38 59-96 50-89 (138)
2 4gof_A Small glutamine-rich te 30.7 29 0.00098 20.9 2.0 25 74-98 5-29 (52)
3 3arc_J Photosystem II reaction 24.1 11 0.00038 22.1 -0.7 11 31-41 30-40 (40)
4 3kl4_B DPAP B, YSCV, signal pe 22.5 12 0.00041 21.8 -0.8 34 29-78 1-34 (42)
5 2l9u_A Receptor tyrosine-prote 20.9 1.3E+02 0.0044 17.2 3.9 20 70-89 18-37 (40)
6 2gqc_A Rhomboid intramembrane 19.8 28 0.00095 21.4 0.4 26 75-100 15-40 (70)
7 3qap_A Sensory rhodopsin-2; ph 15.6 1.5E+02 0.0052 21.9 3.7 36 59-96 122-157 (239)
8 2lxb_A Small glutamine-rich te 15.4 85 0.0029 20.1 2.0 24 74-97 10-33 (74)
9 4ev6_A Magnesium transport pro 14.5 1.7E+02 0.0059 22.1 3.9 8 80-87 331-338 (339)
10 4asv_A Small glutamine-rich te 13.6 98 0.0033 20.7 2.0 24 74-97 22-45 (92)
No 1
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=89.22 E-value=0.35 Score=35.11 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHH--HHhhhhhHHHHHHhhhhcccchh
Q psy9670 59 NDWLWWLIMAFGCLI--CIRAFLQYVTIKRSWNTLSEQAQ 96 (103)
Q Consensus 59 ~~wl~~~lm~~G~fi--~ir~i~~Y~rvkr~e~~~s~~~r 96 (103)
++=..|+++++|+|= .+-=++.|+|-||.|++=+|-|+
T Consensus 50 ~~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s~DPy~~ 89 (138)
T 2k21_A 50 KLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNV 89 (138)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTTT
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHhHhhhccccCCcHHH
Confidence 344568888888873 34447899999999998877654
No 2
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=30.69 E-value=29 Score=20.95 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=19.3
Q ss_pred HHhhhhhHHHHHHhhhhcccchhhe
Q psy9670 74 CIRAFLQYVTIKRSWNTLSEQAQER 98 (103)
Q Consensus 74 ~ir~i~~Y~rvkr~e~~~s~~~r~r 98 (103)
+..+|+||++-.=-...+++.++|-
T Consensus 5 la~sIi~FL~~~~~~~~~s~D~~ES 29 (52)
T 4gof_A 5 LAYAIIQFLHDQLRHGGLSSDAQES 29 (52)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHhHHHH
Confidence 4679999999885555888888874
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=24.12 E-value=11 Score=22.06 Aligned_cols=11 Identities=64% Similarity=1.159 Sum_probs=9.2
Q ss_pred hccccchhhHh
Q psy9670 31 YGALSGFGVSL 41 (103)
Q Consensus 31 ~Gs~aGlGltl 41 (103)
|||-+|+|-++
T Consensus 30 yGsYsGlGSsl 40 (40)
T 3arc_J 30 YGAYAGLGSSL 40 (40)
T ss_dssp HHHSSSTTSCC
T ss_pred eecccccCCCC
Confidence 89999999764
No 4
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=22.46 E-value=12 Score=21.76 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=23.1
Q ss_pred chhccccchhhHhhhhhheeccccccCCCcchHHHHHHHHHHHHHHHhhh
Q psy9670 29 ARYGALSGFGVSLAKWTFIVRTSTEVTSHENDWLWWLIMAFGCLICIRAF 78 (103)
Q Consensus 29 ak~Gs~aGlGltliq~~~~~~~~~~~~~~~~~wl~~~lm~~G~fi~ir~i 78 (103)
||.||-+|-|-.+|..+.++ ++++-|-.++++|+
T Consensus 1 arsgsgsgsgsklirvgiil----------------vlliwgtvlllksi 34 (42)
T 3kl4_B 1 ARSGSGSGSGSKLIRVGIIL----------------VLLIWGTVLLLKSI 34 (42)
T ss_pred CCCCCCCCCccceEEeeeeh----------------hHHHHHHHHHhhcC
Confidence 57788888888888776653 44455666666655
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=20.89 E-value=1.3e+02 Score=17.22 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhHHHHHHhhh
Q psy9670 70 GCLICIRAFLQYVTIKRSWN 89 (103)
Q Consensus 70 G~fi~ir~i~~Y~rvkr~e~ 89 (103)
-.|+.+.|..-|||-||+..
T Consensus 18 vif~~lg~tflywrgrrhhh 37 (40)
T 2l9u_A 18 VIFMMLGGTFLYWRGRRHHH 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCceeEEEccccccc
Confidence 34677788889999999753
No 6
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=19.80 E-value=28 Score=21.39 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=20.3
Q ss_pred HhhhhhHHHHHHhhhhcccchhheee
Q psy9670 75 IRAFLQYVTIKRSWNTLSEQAQERFF 100 (103)
Q Consensus 75 ir~i~~Y~rvkr~e~~~s~~~r~r~~ 100 (103)
..+++||++-++.+..+.++....++
T Consensus 15 aqaf~dyL~~~~I~~~v~~~~~~~~L 40 (70)
T 2gqc_A 15 LAGFVGLLRRLNVPHRVSEESGQQVL 40 (70)
T ss_dssp GGGHHHHHHTTTCCSEEEEETTEEEE
T ss_pred HHHHHHHHHHCCCcEEEEECCCceEE
Confidence 46899999999998888777655543
No 7
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas pharaonis} SCOP: f.13.1.1 PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A* 2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Probab=15.61 E-value=1.5e+02 Score=21.89 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhcccchh
Q psy9670 59 NDWLWWLIMAFGCLICIRAFLQYVTIKRSWNTLSEQAQ 96 (103)
Q Consensus 59 ~~wl~~~lm~~G~fi~ir~i~~Y~rvkr~e~~~s~~~r 96 (103)
..|.++++-.+||+..+..+. -..||..++-+++.|
T Consensus 122 ~kw~~f~ig~~~~l~i~y~l~--~~~~~~a~~~~~~v~ 157 (239)
T 3qap_A 122 ERYALFGMGAVAFLGLVYYLV--GPMTESASQRSSGIK 157 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHHH--THHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCHHHH
Confidence 479999999999999988885 566665554444333
No 8
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=15.38 E-value=85 Score=20.13 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=18.2
Q ss_pred HHhhhhhHHHHHHhhhhcccchhh
Q psy9670 74 CIRAFLQYVTIKRSWNTLSEQAQE 97 (103)
Q Consensus 74 ~ir~i~~Y~rvkr~e~~~s~~~r~ 97 (103)
+..+|+||++-.=-...+++..+|
T Consensus 10 la~sIi~FL~~~~~~~~ls~D~~E 33 (74)
T 2lxb_A 10 IAALIVNYFSSIVEKKEISEDGAD 33 (74)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHH
Confidence 456899999987544578888776
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=14.53 E-value=1.7e+02 Score=22.06 Aligned_cols=8 Identities=0% Similarity=-0.376 Sum_probs=4.3
Q ss_pred hHHHHHHh
Q psy9670 80 QYVTIKRS 87 (103)
Q Consensus 80 ~Y~rvkr~ 87 (103)
=|.|-|+|
T Consensus 331 ~~fkrk~W 338 (339)
T 4ev6_A 331 YIFRRSGW 338 (339)
T ss_dssp HHHHTTTC
T ss_pred HHHHHcCC
Confidence 35665554
No 10
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=13.64 E-value=98 Score=20.72 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHhhhhhHHHHHHhhhhcccchhh
Q psy9670 74 CIRAFLQYVTIKRSWNTLSEQAQE 97 (103)
Q Consensus 74 ~ir~i~~Y~rvkr~e~~~s~~~r~ 97 (103)
+..+|+||++..=-..++++..+|
T Consensus 22 LA~sIIdFL~~sv~~~~ls~D~~E 45 (92)
T 4asv_A 22 IAALIVNYFSSIVEKKEISEDGAD 45 (92)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHH
Confidence 345899999987544578888776
Done!