Query psy9670
Match_columns 103
No_of_seqs 94 out of 96
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 16:38:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9670.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9670hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 35.9 2.7 0.00019 22.5 -0.5 11 31-41 24-34 (34)
2 d1oedc_ f.36.1.1 (C:) Acetylch 29.1 56 0.0041 21.3 5.5 67 11-86 17-92 (260)
3 d1oeda_ f.36.1.1 (A:) Acetylch 27.9 69 0.005 20.8 5.7 68 10-86 16-92 (227)
4 d1oede_ f.36.1.1 (E:) Acetylch 25.1 57 0.0042 21.5 4.9 67 11-85 17-92 (260)
5 d1zkea1 a.30.6.1 (A:1-79) Hypo 17.5 14 0.0011 22.7 0.3 24 39-62 28-51 (79)
6 d1i58a_ d.122.1.3 (A:) Histidi 16.6 17 0.0012 21.9 0.4 17 28-44 145-161 (189)
7 d1ysra1 d.122.1.3 (A:299-446) 16.3 15 0.0011 23.2 0.0 13 34-46 109-121 (148)
8 d1id0a_ d.122.1.3 (A:) Histidi 11.1 31 0.0023 21.5 0.5 11 35-45 108-118 (146)
9 d2c2aa2 d.122.1.3 (A:321-481) 11.1 33 0.0024 21.6 0.6 14 33-46 120-133 (161)
10 d1f5qb2 a.74.1.1 (B:147-252) V 10.7 41 0.003 21.1 1.0 15 18-32 6-20 (106)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=35.89 E-value=2.7 Score=22.54 Aligned_cols=11 Identities=64% Similarity=1.159 Sum_probs=9.4
Q ss_pred hccccchhhHh
Q psy9670 31 YGALSGFGVSL 41 (103)
Q Consensus 31 ~Gs~aGlGltl 41 (103)
|||-+|+|-++
T Consensus 24 YGsYsGlGSsl 34 (34)
T d2axtj1 24 YGAYAGLGSSL 34 (34)
T ss_dssp HHTTTSTTSCC
T ss_pred eeeecccccCC
Confidence 89999999764
No 2
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=29.13 E-value=56 Score=21.30 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhccccchhccccchhhHhhh----hhheec-----cccccCCCcchHHHHHHHHHHHHHHHhhhhhH
Q psy9670 11 LFNWIGFLLIICFCHTVAARYGALSGFGVSLAK----WTFIVR-----TSTEVTSHENDWLWWLIMAFGCLICIRAFLQY 81 (103)
Q Consensus 11 ~Fq~vGFllty~LhtthAak~Gs~aGlGltliq----~~~~~~-----~~~~~~~~~~~wl~~~lm~~G~fi~ir~i~~Y 81 (103)
..-|+||.+-- .-|.|-|||+|.+= ..+.+. .+++.| --..|..-.+..++.-++...++-+
T Consensus 17 ~l~~~~f~lp~--------~~~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vP-li~~y~~~~~~~v~~s~~~t~~Vl~ 87 (260)
T d1oedc_ 17 FLASLAFYLPA--------ESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVP-LIGKYLMFIMSLVTGVIVNCGIVLN 87 (260)
T ss_dssp HHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHeeeCC--------CCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcc-hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 34477776532 23899999998752 122222 122222 2245666667778999999999988
Q ss_pred HHHHH
Q psy9670 82 VTIKR 86 (103)
Q Consensus 82 ~rvkr 86 (103)
+.-|.
T Consensus 88 ~~~~~ 92 (260)
T d1oedc_ 88 FHFRT 92 (260)
T ss_dssp HHHHC
T ss_pred eeecc
Confidence 86553
No 3
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=27.87 E-value=69 Score=20.80 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhccccchhccccchhhHhhh-hh---hee-----ccccccCCCcchHHHHHHHHHHHHHHHhhhhh
Q psy9670 10 FLFNWIGFLLIICFCHTVAARYGALSGFGVSLAK-WT---FIV-----RTSTEVTSHENDWLWWLIMAFGCLICIRAFLQ 80 (103)
Q Consensus 10 ~~Fq~vGFllty~LhtthAak~Gs~aGlGltliq-~~---~~~-----~~~~~~~~~~~~wl~~~lm~~G~fi~ir~i~~ 80 (103)
....|+||.+-- ..|.|-+||+|.+= .. ..+ +.+++.|- -..|...-+..+++.++...++.
T Consensus 16 ~~ls~~~F~lp~--------~s~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPl-i~~y~~~~~~~v~~sli~tiiV~ 86 (227)
T d1oeda_ 16 SFLTGLVFYLPT--------DSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPL-IGKYMLFTMIFVISSIIITVVVI 86 (227)
T ss_dssp HHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHheecC--------CCCccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCc-cchHHHHHHHHHHHHHHHHHHHh
Confidence 445688887742 23899999998653 22 222 22223332 24566667777888888888988
Q ss_pred HHHHHH
Q psy9670 81 YVTIKR 86 (103)
Q Consensus 81 Y~rvkr 86 (103)
|+.-|.
T Consensus 87 ~l~~~~ 92 (227)
T d1oeda_ 87 NTHHRS 92 (227)
T ss_dssp HHHHHC
T ss_pred heeccC
Confidence 886654
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=25.10 E-value=57 Score=21.46 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhccccchhccccchhhHhhh----hhheecc-----ccccCCCcchHHHHHHHHHHHHHHHhhhhhH
Q psy9670 11 LFNWIGFLLIICFCHTVAARYGALSGFGVSLAK----WTFIVRT-----STEVTSHENDWLWWLIMAFGCLICIRAFLQY 81 (103)
Q Consensus 11 ~Fq~vGFllty~LhtthAak~Gs~aGlGltliq----~~~~~~~-----~~~~~~~~~~wl~~~lm~~G~fi~ir~i~~Y 81 (103)
...|+||.+-- -.-|+|-+||+|.+= ..+.+++ +++.|- -..|..-.+..++..++...++.+
T Consensus 17 ~ls~~~F~lp~-------~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPl-i~~~~~~~~~~v~~sl~~t~iVl~ 88 (260)
T d1oede_ 17 SLVVLVYFLPA-------QAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPL-IGKYLIFVMFVSMLIVMNCVIVLN 88 (260)
T ss_dssp HHHHHHHHHHH-------TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHheEecC-------CCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccH-HHHHHHHHHHHHHHHHHHHHheee
Confidence 34578887632 113899999998663 2222222 223332 235777777778999999999988
Q ss_pred HHHH
Q psy9670 82 VTIK 85 (103)
Q Consensus 82 ~rvk 85 (103)
+.-|
T Consensus 89 ~~~~ 92 (260)
T d1oede_ 89 VSLR 92 (260)
T ss_dssp HHHH
T ss_pred EEcc
Confidence 8654
No 5
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=17.48 E-value=14 Score=22.70 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=18.8
Q ss_pred hHhhhhhheeccccccCCCcchHH
Q psy9670 39 VSLAKWTFIVRTSTEVTSHENDWL 62 (103)
Q Consensus 39 ltliq~~~~~~~~~~~~~~~~~wl 62 (103)
+|++-|.+|-|++.|.|.|-+.|.
T Consensus 28 iS~vDyImIKRGS~DmPe~l~~~~ 51 (79)
T d1zkea1 28 LSLGDFIEIKRGSMDMPKGVNEAF 51 (79)
T ss_dssp CCHHHHHHHHTTSSCCCTTCCGGG
T ss_pred hhhhHhheeecCcccCccccCHHH
Confidence 578888888899988888765553
No 6
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=16.55 E-value=17 Score=21.93 Aligned_cols=17 Identities=18% Similarity=0.138 Sum_probs=12.8
Q ss_pred cchhccccchhhHhhhh
Q psy9670 28 AARYGALSGFGVSLAKW 44 (103)
Q Consensus 28 Aak~Gs~aGlGltliq~ 44 (103)
..+.+.-.||||+.++=
T Consensus 145 ~~~~~~G~GLGLai~k~ 161 (189)
T d1i58a_ 145 KVSEVSGRGVGMDVVKN 161 (189)
T ss_dssp HHHGGGTCCCHHHHHHH
T ss_pred ccccCCcCccCHHHHHH
Confidence 34556679999999874
No 7
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.30 E-value=15 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=8.2
Q ss_pred ccchhhHhhhhhh
Q psy9670 34 LSGFGVSLAKWTF 46 (103)
Q Consensus 34 ~aGlGltliq~~~ 46 (103)
-+||||++++-..
T Consensus 109 G~GLGL~i~~~iv 121 (148)
T d1ysra1 109 GSGLGLALVAQQA 121 (148)
T ss_dssp ---CCCHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 3599999998643
No 8
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=11.08 E-value=31 Score=21.52 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=9.4
Q ss_pred cchhhHhhhhh
Q psy9670 35 SGFGVSLAKWT 45 (103)
Q Consensus 35 aGlGltliq~~ 45 (103)
.||||++++-.
T Consensus 108 ~GLGL~I~k~i 118 (146)
T d1id0a_ 108 QGVGLAVAREI 118 (146)
T ss_dssp CCSCHHHHHHH
T ss_pred eeHHHHHHHHH
Confidence 69999999863
No 9
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=11.07 E-value=33 Score=21.59 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=9.8
Q ss_pred cccchhhHhhhhhh
Q psy9670 33 ALSGFGVSLAKWTF 46 (103)
Q Consensus 33 s~aGlGltliq~~~ 46 (103)
.-+||||++++-..
T Consensus 120 ~G~GLGL~i~k~iv 133 (161)
T d2c2aa2 120 PGTGLGLAITKEIV 133 (161)
T ss_dssp --CCCTHHHHHHHH
T ss_pred CcccHHHHHHHHHH
Confidence 34699999998643
No 10
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=10.71 E-value=41 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=12.6
Q ss_pred HHHHHhhccccchhc
Q psy9670 18 LLIICFCHTVAARYG 32 (103)
Q Consensus 18 llty~LhtthAak~G 32 (103)
+++|+||--||.|..
T Consensus 6 licyilhimhapred 20 (106)
T d1f5qb2 6 LICYILHIMHAPRED 20 (106)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHhCcHHH
Confidence 689999999998843
Done!