RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9670
         (103 letters)



>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
          Length = 129

 Score = 25.7 bits (55), Expect = 2.4
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 56 SHENDWLWWLIMA-----FGCLICIRAFLQYVTIKR 86
            E+ +L+ L+ +     F C +C+  F   V++K+
Sbjct: 57 LDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQ 92


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 4.0
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 18/92 (19%)

Query: 19  LIICFCHTVAARYGALS----------GFGVSLAKWTFIVRTSTEVTSHENDWLWWLIMA 68
           L+       A     L             G+++ +W           + + D+L  L + 
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL-----ENPSNTPDKDYL--LSIP 235

Query: 69  FGC-LICIRAFLQYVTIKRSWNTLSEQAQERF 99
             C LI +     YV   +       + +   
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267


>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
           subunit OST6; oxidoreductase, active site loop, redox
           state, membrane; HET: PG4; 1.30A {Saccharomyces
           cerevisiae} PDB: 3g7y_A 3g9b_A*
          Length = 178

 Score = 25.0 bits (54), Expect = 5.6
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 69  FGCLICIRAFLQYVTIKRSWNTLSEQAQERFFFI 102
             C +C      Y  +     + + Q+   FF +
Sbjct: 54  MSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV 87


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.337    0.143    0.523 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,638,470
Number of extensions: 80686
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 10
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (23.9 bits)