RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9670
         (103 letters)



>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
           {Bacteriophage PHI-6 [TaxId: 10879]}
          Length = 664

 Score = 25.0 bits (54), Expect = 1.9
 Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 43  KWTFIVRTSTEVTSHENDWLWWLI 66
           +W+  V  +T+V+ H+  W  WL 
Sbjct: 316 EWSLCV--ATDVSDHDTFWPGWLR 337


>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
           peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 197

 Score = 24.0 bits (51), Expect = 4.7
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 15  IGFLLIICFCHTVAARYGALSGFGVSLAKWTFIVRTSTEVTSHENDWLWWLIMAFGCLIC 74
           +   L+      ++  YG L        +  FI+     +     + L         L  
Sbjct: 98  LNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRL 157

Query: 75  IRAFLQYV 82
           ++A  QY 
Sbjct: 158 VQA-FQYT 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.337    0.143    0.523 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,917
Number of extensions: 16848
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 10
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 47 (22.2 bits)