BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9673
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
N DL F K D+++LRR++D NW+ GE+NG +G FP S V++
Sbjct: 20 NPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
N +L F++ D++ L +ID NW+ G ++G +G FP+SYVQ+
Sbjct: 26 NDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQV 67
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQFVWYLP 158
QID NW+ G ++G +G FP+SYVQ + LP
Sbjct: 43 QIDENWYEGXLHGQSGFFPLSYVQVLVPLP 72
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 91 LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L+LNFK D++ L +I+ +W G V G TG FP+S+V+I
Sbjct: 19 LELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 115 EVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQ 152
E+N G +I+ +W G V G TG FP+S+V+
Sbjct: 20 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 91 LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L+LNFK D++ L +I+ +W G V G TG FP+S+V+I
Sbjct: 189 LELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 91 LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L+LNFK D++ L +I+ +W G V G TG FP+S+V+I
Sbjct: 33 LELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
N +L FK+ DI+ L +ID NW+ G ++G +G FP++YV+I
Sbjct: 20 NEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
N +L FK+ DI+ L +ID NW+ G ++G +G FP++YV+I
Sbjct: 24 NEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEI 65
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQFVWYLP 158
QID NW+ G ++G +G FP++YV+ + LP
Sbjct: 41 QIDENWYEGMLHGQSGFFPINYVEILVALP 70
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
N +L FK+ DI+ L +ID NW+ G ++G +G FP++YV++
Sbjct: 16 NQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQFV 154
QID NW+ G ++G +G FP++YV+ +
Sbjct: 33 QIDENWYEGMIHGESGFFPINYVEVI 58
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+LN +K DIVI+ K + W++G +NG G FP +YV+
Sbjct: 23 ELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L +K DIV + +++D NW GE +G G FP +YV++
Sbjct: 17 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 127 YVQIDNNWFYGEVNGTTGAFPMSYVQ 152
+ ++D NW GE +G G FP +YV+
Sbjct: 29 HKEVDKNWLEGEHHGRLGIFPANYVE 54
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 91 LDLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQID 131
++L+F+K + + L RK++ NW+ G + GT G FP SYVQ+
Sbjct: 32 VELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVS 74
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 129 QIDNNWFYGEVNGT--TGAFPMSYVQ 152
+++ NW+ G + GT G FP SYVQ
Sbjct: 47 KVNENWYEGRITGTGRQGIFPASYVQ 72
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L +K DIV + +++D NW GE +G G FP +YV++
Sbjct: 23 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 61
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 127 YVQIDNNWFYGEVNGTTGAFPMSYVQ 152
+ ++D NW GE +G G FP +YV+
Sbjct: 35 HKEVDKNWLEGEHHGRLGIFPANYVE 60
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+ +L +K DIV + ++ID NW+ GE +G G FP +Y+++
Sbjct: 20 TLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 127 YVQIDNNWFYGEVNGTTGAFPMSYVQFV 154
Y QID NW+ GE +G G FP +Y++ +
Sbjct: 35 YKQIDQNWYEGEHHGRVGIFPRTYIELL 62
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
LNF K DI+ + + +N W++GEV+G G FP SYV+I
Sbjct: 27 LNFSKHDIITVLEQQEN-WWFGEVHGGRGWFPKSYVKI 63
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 125 MSYVQIDNNWFYGEVNGTTGAFPMSYVQFV 154
++ ++ NW++GEV+G G FP SYV+ +
Sbjct: 35 ITVLEQQENWWFGEVHGGRGWFPKSYVKII 64
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIVILRRKID--NNWFYGEVNGTTGAFPMSYVQI 130
DL FKK D++ + +K D N+W+ G NG G FP +YV++
Sbjct: 19 DLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQID-NNWFYGEV 139
+L+FK+ DI+ +L + D NW+ E+NG G P +Y+++ + WF+G++
Sbjct: 16 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKI 65
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 36 CLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDLNF 95
L E+V H+ + + ++++P ++ L P +L F
Sbjct: 127 SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDG---------ELGF 177
Query: 96 KKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
++ D + + D NW+ G +G TG FP +YV
Sbjct: 178 RRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 114 GEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
GE+ G F D NW+ G +G TG FP +YV
Sbjct: 173 GELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
D NW+ E+NG G P +Y++
Sbjct: 33 DQNWYKAELNGKDGFIPKNYIE 54
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 71 RILEGLFPL--VVSFIRFFLNILD-LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSY 127
R P+ V++ + N D L+F K ++ + K D +W+ GE+NG TG FP +Y
Sbjct: 26 RATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNY 85
Query: 128 VQI 130
V++
Sbjct: 86 VKM 88
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQFV 154
D +W+ GE+NG TG FP +YV+
Sbjct: 66 DPDWWQGEINGVTGLFPSNYVKMT 89
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+F K ++ + K D +W+ GE+NG TG FP +YV++
Sbjct: 34 ELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 72
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQFV 154
D +W+ GE+NG TG FP +YV+
Sbjct: 50 DPDWWQGEINGVTGLFPSNYVKMT 73
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 91 LDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQI 130
++++F+K + + L R++D NW+ G + GT+ G FP++YV +
Sbjct: 22 VEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 129 QIDNNWFYGEVNGTT--GAFPMSYVQFV 154
Q+D NW+ G + GT+ G FP++YV +
Sbjct: 37 QVDENWYEGRIPGTSRQGIFPITYVDVI 64
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 6 LNDLLECSVCLD-RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54
L D EC +C+D R D +LPC H+FC+KC+++ H+ CP CR+
Sbjct: 12 LTDEEECCICMDGRADL---ILPCAHSFCQKCIDKWSDRHRN--CPICRL 56
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 91 LDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQI 130
++++F+K + + L R++D NW+ G + GT+ G FP++YV +
Sbjct: 21 VEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 129 QIDNNWFYGEVNGTT--GAFPMSYVQFV 154
Q+D NW+ G + GT+ G FP++YV +
Sbjct: 36 QVDENWYEGRIPGTSRQGIFPITYVDVI 63
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 93 LNFKKDDIVILR-RKIDNNWFYGEVNGTTGAFPMSYVQI 130
L FK++DI+ + + +N WF G++NG G+FP+ +V+I
Sbjct: 27 LPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 125 MSYVQIDNNWFYGEVNGTTGAFPMSYVQFV 154
+++ +N WF G++NG G+FP+ +V+ +
Sbjct: 37 ITFKDQENKWFMGQLNGKEGSFPVDHVEIL 66
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSY 150
+L+ K+ DI+ IL +K W+ GE+ G G FP +YV+ D + + E G +G+ M+Y
Sbjct: 21 ELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGS-SMTY 79
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 132 NNWFYGEVNGTTGAFPMSYVQ--FVWYLP 158
W+ GE+ G G FP +YV+ + YLP
Sbjct: 39 QGWWRGEIYGRIGWFPSNYVEEDYSEYLP 67
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
LNF K+D++ + + D W++GEV G G FP SYV++
Sbjct: 29 LNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVKL 65
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 134 WFYGEVNGTTGAFPMSYVQFV 154
W++GEV G G FP SYV+ +
Sbjct: 46 WWFGEVQGQKGWFPKSYVKLI 66
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 5 TLNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSH-KELRCPEC 52
L ++LEC +C++ K+L C HT C++CLE++++S +RCP C
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
DL F++ DI+++ K++ W GE G G FP +V+
Sbjct: 21 DLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L FK+ D +I+ +K W+ GE+NG G P +YVQ
Sbjct: 20 ELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 133 NWFYGEVNGTTGAFPMSYVQ 152
W+ GE+NG G P +YVQ
Sbjct: 38 GWWEGELNGKRGWVPANYVQ 57
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L FK+ D +I+ +K W+ GE+NG G P +YVQ
Sbjct: 19 ELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 133 NWFYGEVNGTTGAFPMSYVQ 152
W+ GE+NG G P +YVQ
Sbjct: 37 GWWEGELNGKRGWVPANYVQ 56
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
DL K D V L K+ W+ G NG TG FP +YV+
Sbjct: 18 DLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 115 EVNGTTGAFPMSYVQI----DNNWFYGEVNGTTGAFPMSYVQ 152
+ +G G P VQ+ W+ G NG TG FP +YV+
Sbjct: 14 QQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F K I+ + K D +W+ GEV+G G FP +YV++
Sbjct: 18 ELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKL 56
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQFV 154
D +W+ GEV+G G FP +YV+
Sbjct: 34 DPDWWKGEVSGQVGLFPSNYVKLT 57
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+F++ I+ + +K D+ W+ G +NG TG FP +YV+
Sbjct: 33 ELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQFV 154
D+ W+ G +NG TG FP +YV+ +
Sbjct: 49 DDGWYEGVMNGVTGLFPGNYVESI 72
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L FK+ D++ L K D NW+ G++N G FP +YV
Sbjct: 18 ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 131 DNNWFYGEVNGTTGAFPMSYV 151
D NW+ G++N G FP +YV
Sbjct: 34 DPNWWEGQLNNRRGIFPSNYV 54
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L FK+ D++ L K D NW+ G++N G FP +YV
Sbjct: 20 ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 131 DNNWFYGEVNGTTGAFPMSYV 151
D NW+ G++N G FP +YV
Sbjct: 36 DPNWWEGQLNNRRGIFPSNYV 56
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L FK+ D++ L K D NW+ G++N G FP +YV
Sbjct: 18 ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 131 DNNWFYGEVNGTTGAFPMSYV 151
D NW+ G++N G FP +YV
Sbjct: 34 DPNWWEGQLNNRRGIFPSNYV 54
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+F K D++ + R + W+ G +NG TG FP +YV+
Sbjct: 24 ELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVR 61
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQFV 154
+ W+ G +NG TG FP +YV+ V
Sbjct: 40 EGGWWEGTLNGRTGWFPSNYVREV 63
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+FK+ DI+ +L + D NW+ E+NG G P +Y+++
Sbjct: 16 ELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEM 55
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQ 152
+ D NW+ E+NG G P +Y++
Sbjct: 31 ESDQNWYKAELNGKDGFIPKNYIE 54
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
N +L+F K D++ + R + W+ G NG TG FP +YV+
Sbjct: 19 NEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
+ W+ G NG TG FP +YV+
Sbjct: 38 EGGWWEGTHNGRTGWFPSNYVR 59
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
N +L+F K D++ + R + W+ G NG TG FP +YV+
Sbjct: 17 NEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
+ W+ G NG TG FP +YV+
Sbjct: 36 EGGWWEGTHNGRTGWFPSNYVR 57
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+F K D++ + R + W+ G NG TG FP +YV+
Sbjct: 22 ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
+ W+ G NG TG FP +YV+
Sbjct: 38 EGGWWEGTHNGRTGWFPSNYVR 59
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+FK+ DI+ +L + D NW+ E+NG G P +Y+++
Sbjct: 25 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 64
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
D NW+ E+NG G P +Y++
Sbjct: 42 DQNWYKAELNGKDGFIPKNYIE 63
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56
T++DLL C +C + + + + C H +C C+ + +S + CP C V V
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTCCVTV 67
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+F++ D++ L + ++W+ GE NG G P Y+ +
Sbjct: 26 ELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITL 64
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 92 DLNFKKDDIVILRRKIDN--NWFYGEVNGTTGAFPMSYVQIDNN 133
DLNF+ D + + K D+ +W+ G++ G TG FP +YV +++
Sbjct: 33 DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG 76
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
DL F+K D++ + +K D+ N+W+ G VNG G FP +YV
Sbjct: 19 DLPFRKGDVITILKKSDSQ---------------------NDWWTGRVNGREGIFPANYV 57
Query: 152 QFV 154
+ V
Sbjct: 58 ELV 60
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 89 NILDLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQ 129
++ +L+ ++ D+V + +I D W+ GE NG G FP +YV+
Sbjct: 20 DMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 126 SYVQIDNNWFYGEVNGTTGAFPMSYVQ 152
S + D W+ GE NG G FP +YV+
Sbjct: 36 SRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 34.7 bits (78), Expect = 0.022, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 12 CSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +CL+ + TS + VLPC H + C EE++ + RCP C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLC 49
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L+F+K I+ IL + D+NW+ E++G G P +Y+++ N+
Sbjct: 16 ELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNH 58
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 128 VQIDNNWFYGEVNGTTGAFPMSYVQF 153
++ D+NW+ E++G G P +Y++
Sbjct: 30 MEDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L+F+K I+ IL + D+NW+ E++G G P +Y+++ N+
Sbjct: 16 ELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNH 58
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 128 VQIDNNWFYGEVNGTTGAFPMSYVQF 153
++ D+NW+ E++G G P +Y++
Sbjct: 30 MEDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
L + CS+C L ++ + C HTFCK C+ + + RCP+C ++V
Sbjct: 12 LTPYILCSICKGYLIDATTITECLHTFCKSCI--VRHFYYSNRCPKCNIVVH 61
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIVILRRK--IDNNWFYGEVNGTTGAFPMSYVQI 130
+L K+ DIV L K ID W+ GE+NG G FP ++V++
Sbjct: 18 ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 130 IDNNWFYGEVNGTTGAFPMSYVQFV 154
ID W+ GE+NG G FP ++V+ +
Sbjct: 35 IDVGWWEGELNGRRGVFPDNFVKLL 59
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F++ D + + D NW+ G +G TG FP +YV
Sbjct: 16 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 114 GEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
GE+ G F D NW+ G +G TG FP +YV
Sbjct: 15 GELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 89 NILDLNFKKDDIVILRRK--IDNNWFYGEVNGTTGAFPMSYVQI 130
N +L K+ DIV L K ID W+ GE+NG G FP ++V++
Sbjct: 22 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 130 IDNNWFYGEVNGTTGAFPMSYVQFV 154
ID W+ GE+NG G FP ++V+ +
Sbjct: 42 IDVGWWEGELNGRRGVFPDNFVKLL 66
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQ 129
+++FK D +I + ID W YG V G TG P +YV+
Sbjct: 19 EVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 130 IDNNWFYGEVN--GTTGAFPMSYVQFV 154
ID W YG V G TG P +YV+ +
Sbjct: 34 IDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F++ D + + D NW+ G +G TG FP +YV
Sbjct: 18 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 114 GEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV 154
GE+ G F D NW+ G +G TG FP +YV V
Sbjct: 17 GELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F++ D + + D NW+ G +G TG FP +YV
Sbjct: 18 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 114 GEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
GE+ G F D NW+ G +G TG FP +YV
Sbjct: 17 GELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 89 NILDLNFKKDDIVILRRK--IDNNWFYGEVNGTTGAFPMSYVQI 130
N +L K+ DIV L K ID W+ GE+NG G FP ++V++
Sbjct: 16 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 59
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 130 IDNNWFYGEVNGTTGAFPMSYVQFV 154
ID W+ GE+NG G FP ++V+ +
Sbjct: 36 IDVGWWEGELNGRRGVFPDNFVKLL 60
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F+K+DI+ + + D + + GE+NG G FP +V++
Sbjct: 23 ELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F++ D + + D NW+ G +G TG FP +YV
Sbjct: 18 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 114 GEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
GE+ G F D NW+ G +G TG FP +YV
Sbjct: 17 GELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 89 NILDLNFKKDDIVILRRK--IDNNWFYGEVNGTTGAFPMSYVQI 130
N +L K+ DIV L K ID W+ GE+NG G FP ++V++
Sbjct: 20 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 130 IDNNWFYGEVNGTTGAFPMSYVQFV 154
ID W+ GE+NG G FP ++V+ +
Sbjct: 40 IDVGWWEGELNGRRGVFPDNFVKLL 64
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
N +L+ K DI+ + R + W+ G +NG TG FP +YV+
Sbjct: 23 NEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVR 63
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
+ W+ G +NG TG FP +YV+
Sbjct: 42 EGGWWEGTLNGRTGWFPSNYVR 63
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKC-LEEIVSSHKELRCPECR 53
+L+ L C +CLD L + C H FC C + + S +KE CP CR
Sbjct: 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE--CPTCR 97
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKC-LEEIVSSHKELRCPECR 53
+L+ L C +CLD L + C H FC C + + S +KE CP CR
Sbjct: 49 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE--CPTCR 96
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
Length = 68
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGA-----FPMSYVQI 130
DLNF+KD +I+ D W++GE + G FP S+V +
Sbjct: 23 DLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV 66
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 5 TLNDLLECSVCLDRLDTS--SKVLP-CQHTFCKKCLEEIVSSHKELRCPECRVLV 56
++D +EC+VCL L+ ++ LP C H F +C++ + SH CP CR+ V
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCRLTV 53
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 81 VSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
V+F N +L K DI+ + +++ W+ G +NG TG FP ++++
Sbjct: 12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQ 152
+++ W+ G +NG TG FP ++++
Sbjct: 37 EVEEGWWEGVLNGKTGMFPSNFIK 60
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGA-----FPMSYVQI 130
DLNF+KD +I+ D W++GE + G FP S+V +
Sbjct: 24 DLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV 67
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 81 VSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
V+F N +L K DI+ + +++ W+ G +NG TG FP ++++
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 71
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 129 QIDNNWFYGEVNGTTGAFPMSYVQ 152
+++ W+ G +NG TG FP ++++
Sbjct: 48 EVEEGWWEGVLNGKTGMFPSNFIK 71
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYG--EVNGTTGAFPMSYVQ 129
+++F+ D ++ ++ID+ W YG E G TG P +YV+
Sbjct: 19 EVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 129 QIDNNWFYG--EVNGTTGAFPMSYVQFV 154
QID+ W YG E G TG P +YV+ +
Sbjct: 33 QIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E ++G G P+ YV+
Sbjct: 17 DLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVE 55
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMS 149
+L FK D++ + + +W++G+++ G FP S+V++ W E G+ P S
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRL---WVNQEDEVEEGSGPSS 80
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKC-LEEIVSSHKELRCPECR 53
+L+ L C +CLD L + C H FC C + + S +KE CP CR
Sbjct: 30 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE--CPTCR 77
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVNG G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVK 59
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
C +CL+ S LPC H FC C+ + + CP C+V VE
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP--TCPLCKVPVE 51
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+++F DDI+ ID+ W+ G G G FP +YV++
Sbjct: 25 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 63
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
+L FK +++ + D NW+ GE + TG FP ++V D
Sbjct: 21 ELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+++F DDI+ ID+ W+ G G G FP +YV++
Sbjct: 26 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 72 ILEGLFPLVVSFIRF-FLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+ +G V+ RF L +L+F+ D + + +++ W G + G TG FP +V++
Sbjct: 8 MAQGALTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKL 67
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVNG G P +YV+
Sbjct: 17 EVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVK 54
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F++ DI+ + D NW+ G G TG P +YV
Sbjct: 19 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 150 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+++F DDI+ ID+ W+ G G G FP +YV++
Sbjct: 33 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 71
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQI 130
L F +++ L + D W+ GE +G G FP SYVQ+
Sbjct: 20 GLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQL 59
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 30 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 68
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F++ DI+ + D NW+ G G TG P +YV
Sbjct: 23 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 152 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 190
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQIDN 132
+++F+ D ++ + ID+ W YG V G TG P +Y++ N
Sbjct: 22 EVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN 64
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 115 EVNGTTGAFPMSYVQIDNNWFYGEVN--GTTGAFPMSYVQFV 154
EV+ G + ++ ID+ W YG V G TG P +Y++FV
Sbjct: 22 EVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56
+C +C++ L LPC HT CK C + V L CP CR V
Sbjct: 17 QCGICMEIL-VEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRV 60
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 150 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
+L FK +I+ + D NW+ GE + G FP ++V D
Sbjct: 33 ELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTAD 72
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L KK DI+ L + +W+ EVNG G P +Y++
Sbjct: 22 ELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLK 59
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 88 LNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
++ +L FK D++ + + W++G V G FP S+V++
Sbjct: 48 MDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRL 90
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
+L F ++D +I +D++W+ GE+ +G+ G FP +YV + N
Sbjct: 20 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 62
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
+L+FKK ++L ++ ++W+ G NG G P Y+ + +
Sbjct: 25 ELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQD 65
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 98 DDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
D I ++R + W YGE +G G FP SY +
Sbjct: 23 DIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 132 NNWFYGEVNGTTGAFPMSYVQ 152
+ W YGE +G G FP SY +
Sbjct: 34 SGWTYGECDGLKGLFPTSYCK 54
>pdb|2BA1|A Chain A, Archaeal Exosome Core
pdb|2BA1|B Chain B, Archaeal Exosome Core
pdb|2BA1|C Chain C, Archaeal Exosome Core
pdb|3M7N|A Chain A, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|B Chain B, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|C Chain C, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M85|A Chain A, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|B Chain B, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|C Chain C, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 179
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 8 DLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
D+L+ V D RL T + + C C E+V L+CPEC
Sbjct: 116 DILKARVIGDNLRLSTKEEEMGVLRALCSNCKTEMVREGDILKCPEC 162
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 17 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
+L F ++D +I +D++W+ GE+ +G+ G FP +YV + N
Sbjct: 17 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 59
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 17 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 77 FPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
P V F +L+ K VI+ K + W+ G NG G FP +YV
Sbjct: 5 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 19 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
+L F ++D +I +D++W+ GE+ +G+ G FP +YV + N
Sbjct: 16 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L FK D++ + + W++G V G FP S+V++
Sbjct: 83 ELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRL 121
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 77 FPLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
P V F +L+ K VI+ K + W+ G NG G FP +YV
Sbjct: 18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 19 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 16 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 54
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 99 DIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
DIV + R N + GEVNG G FP ++V+I
Sbjct: 26 DIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 17 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 12 CSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
C +CL+ + TS + VLPC H + C EE++ + RCP C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLC 49
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L FK D++ + + W++G V G FP S+V++ N
Sbjct: 46 ELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN 87
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
LN L C +C ++ ++ C H+FCK C+ + + K CP C V V
Sbjct: 8 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPICDVQVH 57
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L +I+ RK D W+ G++NG G FP ++V+
Sbjct: 17 ELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVR 54
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
D W+ G++NG G FP ++V+
Sbjct: 33 DGGWWEGQINGRRGLFPDNFVR 54
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
LN L C +C ++ ++ C H+FCK C+ + + K CP C V V
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPICDVQVH 61
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L FK +I+I+ D NW+ GE + G FP ++V
Sbjct: 33 ELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 11 ECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
+C++CL L+ V LPC H F + C+++ + ++K +CP CRV +E
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPICRVDIE 62
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 99 DIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
DIV + R N + GEVNG G FP ++V+I
Sbjct: 262 DIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 293
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK +I+++ K + W+ +G G P+ YV+
Sbjct: 141 DLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVE 179
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 99 DIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
DIV + R N + GEVNG G FP ++V+I
Sbjct: 41 DIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+FKK ++L + +W+ G NG G P Y+ +
Sbjct: 22 ELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 99 DIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
DIV + R N + GEVNG G FP ++V+I
Sbjct: 262 DIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 293
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK +I+++ K + W+ +G G P+ YV+
Sbjct: 141 DLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVE 179
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
LN L C +C ++ ++ C H+FCK C+ + + K CP C V V
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPICDVQVH 61
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 78 PLVVSFIRFFLNILD-LNFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYV 128
P VV+ + N D L + DI+ + K + +W+YG + G G FP ++V
Sbjct: 7 PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 78 PLVVSFIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
P V F +L+ K V + K + W+ G NG G FP +YV
Sbjct: 2 PAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L ++ DI+ + D NW+ G G TG P +YV
Sbjct: 30 ELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 131 DNNWFYGEVNGTTGAFPMSYV 151
D NW+ G G TG P +YV
Sbjct: 46 DTNWWKGTSKGRTGLIPSNYV 66
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L K DI+ + +++ W+ G +N G FP ++V+
Sbjct: 23 ELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L K DI+ + +++ W+ G +N G FP ++V+
Sbjct: 17 ELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L+F +DI+ + ++ + W+ G + G G FP +YV
Sbjct: 21 ELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P SYV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVK 59
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 76 LFPLVVSFIRFFLNILDLNFKKDDIV--ILRRKIDNNWFYGEVNGTTGAFPMSY-VQI 130
LFP + N +L F++ +I+ I + + W+ GE+NG G FP ++ VQI
Sbjct: 12 LFPYTGT------NEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 89 NILDLNFKKDDI-VILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+ DL FKK +I +++ +K D W + G G P +Y++
Sbjct: 23 QVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-------ELRCPECRVLVECKVDELP 64
C +CL+ L T L C H+FC+ CL ++HK E CP CR+ + + +
Sbjct: 22 CPICLELL-TQPLSLDCGHSFCQACL---TANHKKSMLDKGESSCPVCRISYQ--PENIR 75
Query: 65 PNVLLMRILE 74
PN + I+E
Sbjct: 76 PNRHVANIVE 85
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 14/124 (11%)
Query: 34 KKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDL 93
KK +EIV H LR +V N+L M +P S + N L
Sbjct: 12 KKKQKEIVDLHNSLRR---------RVSPTASNMLKME----WYPEAASNAERWANTCSL 58
Query: 94 NFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID-NNWFYGEVNGTTGAFPMSYVQ 152
N D++ +L Y N T + + N+ YG G+ Y Q
Sbjct: 59 NHSPDNLRVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQ 118
Query: 153 FVWY 156
VWY
Sbjct: 119 IVWY 122
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68
C +C + D K+ PC H C CL S + CP CR C++ P V+
Sbjct: 335 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCR----CEIKGTEPIVV 385
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68
C +C + D K+ PC H C CL S + CP CR C++ P V+
Sbjct: 335 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCR----CEIKGTEPIVV 385
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68
C +C + D K+ PC H C CL S + CP CR C++ P V+
Sbjct: 337 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCR----CEIKGTEPIVV 387
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68
C +C + D K+ PC H C CL S + CP CR C++ P V+
Sbjct: 337 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCR----CEIKGTEPIVV 387
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
DL + DI+ L + +W+ G++ G FP ++VQ
Sbjct: 23 DLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 14/124 (11%)
Query: 34 KKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLNILDL 93
KK +EIV H LR +V N+L M +P S + N L
Sbjct: 12 KKKQKEIVDLHNSLRR---------RVSPTASNMLKME----WYPEAASNAERWANTCSL 58
Query: 94 NFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID-NNWFYGEVNGTTGAFPMSYVQ 152
N D++ +L Y N T + + N+ YG G+ Y Q
Sbjct: 59 NHSPDNLRVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQ 118
Query: 153 FVWY 156
VWY
Sbjct: 119 IVWY 122
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPECRVLVECKVDEL 63
+ +LEC +CL+ + C H FCK C+ ++++ K +CP C+ + + L
Sbjct: 17 AMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR--SL 73
Query: 64 PPNVLLMRILEGLFPLVVSF 83
+ +++E L ++ +F
Sbjct: 74 QESTRFSQLVEELLKIICAF 93
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVK 59
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L KK DI+ L + +W+ EVN G P +Y++
Sbjct: 22 ELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLK 59
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 17 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
DL F + + +++ +K D W+ G + +G FP +YV+
Sbjct: 24 DLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVK 60
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
C +C + D K+ PC H C CL S + CP CR ++
Sbjct: 341 CKICAEN-DKDVKIEPCGHLMCTSCLTAWQESDGQ-GCPFCRCEIK 384
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 3 EWTLNDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
E + LEC VC + L S + LPC H F C+ + H CP CR
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVCR 59
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 89 NILDLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQ 129
N +++F DI+ + K + W YG G G FP +YV+
Sbjct: 18 NHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 33 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 70
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 21 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 42
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQ 129
N +L + DIV + K D+ WF G T G FP +YV+
Sbjct: 19 NDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 52
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 17 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 21 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTT--GAFPMSYVQ 129
N +L + DIV + K D+ WF G T G FP +YV+
Sbjct: 19 NDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFY-GEVNGTTGAFPMSYVQ 129
+L F DI+ + +ID + FY GE+NG G P ++++
Sbjct: 30 ELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L KK DI+ L + +W+ EVN G P +Y++
Sbjct: 22 ELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVK 59
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCL 37
L EC +CL L + + PC H FCK C+
Sbjct: 22 LESKYECPICLMALREAVQT-PCGHRFCKACI 52
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 44
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 6 LNDLLE----CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
+ND+LE C +C + + L C H+FC C+ E + +++ CP CR ++ K
Sbjct: 57 MNDVLENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMK--RKIECPICRKDIKSKT 112
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 28 CQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP 78
CQH CK CL+ + + CP CR + + + N L +L LFP
Sbjct: 70 CQHNVCKDCLDRSFRA-QVFSCPACRYDLG-RSYAMQVNQPLQTVLNQLFP 118
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPECRVLVE 57
L + + C +CLD L + C H FC KC+ +I +S +CP C+ V
Sbjct: 17 LQEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV--SSHK 45
L EC +CL L + + PC H FCK C+ + + + HK
Sbjct: 3 LGSKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHK 43
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 105 RKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV-QFVWYLP 158
+KID W+Y + +VQ W+Y +V+G+ + Y+ Q+ ++ P
Sbjct: 379 KKIDGIWYYFN---KENQMEIGWVQDKEQWYYLDVDGSMKTGWLQYMGQWYYFAP 430
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPECRVLVECKVD 61
+ + + C +CL+ L C H+FC+ C+ E ++ + CP CRV
Sbjct: 16 IKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY--PFG 72
Query: 62 ELPPNVLLMRILE 74
L PN+ + I+E
Sbjct: 73 NLKPNLHVANIVE 85
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 12 CSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54
C VC+ ++ +VLPC H F KC+++ + +++ CP CR
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT--CPICRA 68
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 6 LNDLLE----CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVD 61
+ND+LE C +C + + L C H+FC C+ E + +++ CP CR ++ K
Sbjct: 46 MNDVLENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMK--RKIECPICRKDIKSKT- 101
Query: 62 ELPPNVLLMRILEGLFPLVV-SFIRFFLNILDLNFKKDDIVILRRKIDNNWF 112
+ LV+ + I +N L K+ IV++R + F
Sbjct: 102 ---------------YSLVLDNXINKMVNNLSSEVKERRIVLIRERKAKRLF 138
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 93 LNFKKDDIVILR--RKIDNNWFYGEVNGTTGAFPMSYVQ 129
L+F + D++ L ++ W +G G +G FP VQ
Sbjct: 25 LSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQID 131
DL F++ + + + K + +W+ GTTG P +YVQI
Sbjct: 134 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 174
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCL 37
L EC +CL L + + PC H FCK C+
Sbjct: 15 LESKYECPICLMALREAVQT-PCGHRFCKACI 45
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EVN G P +Y++
Sbjct: 22 EVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
L+F + + +++ R+ +W++GE G G P ++V
Sbjct: 24 LSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52
L LL CS C + L + C+H FC C+ + + + CP C
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG----CPVC 61
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQID 131
DL F++ + + + K + +W+ GTTG P +YVQI
Sbjct: 163 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 203
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 2 DEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCL-----EEIVSSHKELRCPECRVLV 56
+ + + C +CL+ L T L C H+ C+ C+ E + S + CP C +
Sbjct: 5 SSGNVQEEVTCPICLELL-TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63
Query: 57 ECKVDELPPNVLLMRILE 74
+ L N L I+E
Sbjct: 64 --SFEHLQANQHLANIVE 79
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQFV 154
+ W GE+NG G FP ++V+ +
Sbjct: 34 EEGWLEGELNGRRGMFPDNFVKEI 57
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 108 DNNWFYGEVNGTTGAFPMSYVQ 129
+ W GE+NG G FP ++V+
Sbjct: 34 EEGWLEGELNGRRGMFPDNFVK 55
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 6 LNDLLE----CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
+ND+LE C +C + + L C H+FC C+ E + +++ CP CR ++ K
Sbjct: 46 MNDVLENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMK--RKIECPICRKDIKSKT 101
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 108 DNNWFYGEVNGTTGAFPMSYVQ 129
+ W GE+NG G FP ++V+
Sbjct: 33 EEGWLEGELNGRRGMFPDNFVK 54
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 131 DNNWFYGEVNGTTGAFPMSYVQ 152
+ W GE+NG G FP ++V+
Sbjct: 33 EEGWLEGELNGRRGMFPDNFVK 54
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCL 37
L EC +CL L + + PC H FCK C+
Sbjct: 15 LESKYECPICLMALREAVQT-PCGHRFCKACI 45
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 133 NWFYGEVNGTTGAFPMSYVQFV 154
W G +NG TG P +YV+F+
Sbjct: 45 GWLEGTLNGKTGLIPENYVEFL 66
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EV G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVK 59
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 24 KVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54
K+LPC HT C CLE ++CP C+
Sbjct: 20 KLLPCLHTLCSGCLEA-----SGMQCPICQA 45
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
L + + C +CLD L + C H FC KC+ +I +S +CP C
Sbjct: 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F+ ++V + + +W+ G ++ G FP +YV
Sbjct: 21 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F+ ++V + + +W+ G ++ G FP +YV
Sbjct: 18 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128
+L F+ ++V + + +W+ G ++ G FP +YV
Sbjct: 17 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W+ EV G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVK 59
>pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase Iii
Alpha-Subunit
pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase Iii
Alpha-Subunit
Length = 1220
Score = 26.2 bits (56), Expect = 9.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 34 KKCLEEIVSSHKELRCPECRVLVECKVDELP---------PNVLLMRILE 74
K+ L VS H LR P R + C ++EL P VLL ++E
Sbjct: 1003 KEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVE 1052
>pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-ray Structure Of Dna Polymerase Iii
Length = 1220
Score = 26.2 bits (56), Expect = 9.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 34 KKCLEEIVSSHKELRCPECRVLVECKVDELP---------PNVLLMRILE 74
K+ L VS H LR P R + C ++EL P VLL ++E
Sbjct: 1003 KEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVE 1052
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
C +C + D K+ PC H C CL S + CP CR ++
Sbjct: 27 CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEIK 70
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 8 DLLECSVCLDRLDTSSKVLPC-QHTFCKKCLEEIVSSHKELRCPECR 53
D L C +C D + T + V+PC +++C +C+ + E CP C
Sbjct: 12 DELLCLICKDIM-TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,155,449
Number of Sequences: 62578
Number of extensions: 209005
Number of successful extensions: 1014
Number of sequences better than 100.0: 225
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 359
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)