Query psy9673
Match_columns 162
No_of_seqs 177 out of 2854
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 16:42:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4348|consensus 99.7 9.7E-18 2.1E-22 126.3 0.9 41 90-130 114-154 (627)
2 KOG4225|consensus 99.6 1.8E-16 3.8E-21 119.5 4.1 74 84-157 233-364 (489)
3 KOG4226|consensus 99.6 5.9E-16 1.3E-20 110.6 4.7 73 90-162 121-257 (379)
4 KOG4348|consensus 99.6 3.3E-16 7.2E-21 118.1 -0.7 67 90-156 15-157 (627)
5 PF15227 zf-C3HC4_4: zinc fing 99.5 9.1E-15 2E-19 77.3 2.5 40 12-52 1-42 (42)
6 KOG1029|consensus 99.5 5.6E-15 1.2E-19 118.0 0.5 65 90-154 993-1108(1118)
7 KOG1029|consensus 99.5 9.3E-15 2E-19 116.8 1.0 64 90-154 827-961 (1118)
8 TIGR00599 rad18 DNA repair pro 99.4 1E-13 2.3E-18 105.8 2.6 72 4-80 21-92 (397)
9 KOG0287|consensus 99.4 4.2E-14 9.2E-19 103.7 0.1 72 4-80 18-89 (442)
10 smart00504 Ubox Modified RING 99.4 3.1E-13 6.7E-18 78.2 3.6 61 9-74 1-61 (63)
11 KOG4792|consensus 99.4 1.7E-13 3.8E-18 95.6 2.4 77 82-158 125-288 (293)
12 PLN03208 E3 ubiquitin-protein 99.3 5.4E-13 1.2E-17 91.9 3.0 50 7-57 16-79 (193)
13 PF13639 zf-RING_2: Ring finge 99.3 1.4E-12 3E-17 70.0 1.7 41 11-53 2-44 (44)
14 KOG1118|consensus 99.3 1.4E-12 3.1E-17 94.7 2.1 61 76-159 301-366 (366)
15 PF14604 SH3_9: Variant SH3 do 99.3 5.1E-12 1.1E-16 69.2 3.8 39 90-128 10-48 (49)
16 COG5432 RAD18 RING-finger-cont 99.3 1.3E-12 2.9E-17 94.2 1.6 70 6-80 22-91 (391)
17 PF13923 zf-C3HC4_2: Zinc fing 99.2 3.6E-12 7.8E-17 66.5 2.2 38 12-52 1-39 (39)
18 KOG4226|consensus 99.2 1.1E-11 2.3E-16 89.0 5.2 68 90-158 18-166 (379)
19 PF14835 zf-RING_6: zf-RING of 99.2 1.3E-12 2.8E-17 73.6 -0.1 62 5-73 3-65 (65)
20 PF00097 zf-C3HC4: Zinc finger 99.2 6E-12 1.3E-16 66.5 2.3 40 12-52 1-41 (41)
21 PF13920 zf-C3HC4_3: Zinc fing 99.2 9.2E-12 2E-16 68.6 2.6 47 8-57 1-48 (50)
22 KOG4225|consensus 99.2 1.1E-11 2.3E-16 94.0 3.6 47 84-130 307-360 (489)
23 PHA02929 N1R/p28-like protein; 99.2 1.4E-11 3E-16 88.4 3.4 49 7-57 172-227 (238)
24 PF04564 U-box: U-box domain; 99.2 9.6E-12 2.1E-16 73.9 2.1 67 8-78 3-69 (73)
25 KOG0823|consensus 99.1 2.1E-11 4.7E-16 85.6 2.2 49 8-57 46-95 (230)
26 PF13445 zf-RING_UBOX: RING-ty 99.1 2.2E-11 4.7E-16 64.4 1.7 38 12-50 1-43 (43)
27 KOG0317|consensus 99.1 2.7E-11 5.9E-16 87.5 2.4 48 7-57 237-284 (293)
28 PF14634 zf-RING_5: zinc-RING 99.1 5.7E-11 1.2E-15 63.6 2.2 42 11-54 1-44 (44)
29 KOG2199|consensus 99.1 2E-11 4.4E-16 91.6 -0.1 48 81-128 215-267 (462)
30 PF07653 SH3_2: Variant SH3 do 99.1 3.5E-10 7.6E-15 63.5 4.6 40 90-129 13-53 (55)
31 KOG2070|consensus 99.0 1.8E-10 3.9E-15 88.7 4.0 41 90-130 31-71 (661)
32 KOG0320|consensus 99.0 1.2E-10 2.5E-15 78.6 2.1 50 6-57 128-178 (187)
33 PHA02926 zinc finger-like prot 99.0 2.3E-10 4.9E-15 80.1 2.6 51 7-57 168-230 (242)
34 cd00162 RING RING-finger (Real 99.0 3.5E-10 7.7E-15 60.4 2.6 44 11-55 1-44 (45)
35 KOG2996|consensus 99.0 3.8E-10 8.2E-15 88.6 2.8 40 91-130 625-667 (865)
36 KOG2177|consensus 98.9 3.8E-10 8.1E-15 84.5 1.1 70 4-80 8-77 (386)
37 smart00184 RING Ring finger. E 98.8 2E-09 4.3E-14 55.5 2.5 39 12-52 1-39 (39)
38 PF12678 zf-rbx1: RING-H2 zinc 98.8 2.4E-09 5.1E-14 63.5 2.6 41 11-53 21-73 (73)
39 KOG2164|consensus 98.8 2.2E-09 4.7E-14 83.3 2.0 48 9-57 186-236 (513)
40 COG5243 HRD1 HRD ubiquitin lig 98.7 5.2E-09 1.1E-13 78.3 2.3 48 7-56 285-344 (491)
41 PF14604 SH3_9: Variant SH3 do 98.7 2.6E-08 5.7E-13 54.4 4.2 34 119-152 16-49 (49)
42 KOG4628|consensus 98.7 1.1E-08 2.4E-13 76.9 2.4 47 10-57 230-278 (348)
43 COG5574 PEX10 RING-finger-cont 98.7 9.1E-09 2E-13 73.7 1.8 50 7-57 213-262 (271)
44 KOG3601|consensus 98.6 5.7E-09 1.2E-13 72.5 0.3 41 90-130 14-55 (222)
45 KOG2996|consensus 98.6 2.8E-08 6E-13 78.4 3.8 49 83-131 807-862 (865)
46 smart00326 SH3 Src homology 3 98.6 8.5E-08 1.8E-12 53.7 4.5 40 90-129 16-56 (58)
47 PF00018 SH3_1: SH3 domain; I 98.6 6.6E-08 1.4E-12 52.6 3.8 36 90-125 11-48 (48)
48 TIGR00570 cdk7 CDK-activating 98.6 3.5E-08 7.6E-13 73.1 3.3 48 9-57 3-54 (309)
49 KOG2660|consensus 98.6 1.4E-08 3E-13 74.9 0.6 69 5-75 11-81 (331)
50 cd00174 SH3 Src homology 3 dom 98.5 1.7E-07 3.8E-12 51.7 4.2 40 90-129 13-53 (54)
51 KOG0311|consensus 98.5 1.2E-08 2.6E-13 75.8 -1.4 53 4-57 38-90 (381)
52 KOG3632|consensus 98.5 1.1E-07 2.4E-12 78.9 3.8 66 90-155 1160-1308(1335)
53 KOG4159|consensus 98.5 6.7E-08 1.5E-12 74.3 2.0 51 4-57 79-129 (398)
54 KOG0802|consensus 98.5 5.3E-08 1.2E-12 78.5 1.4 47 8-56 290-340 (543)
55 KOG0978|consensus 98.4 2.4E-08 5.2E-13 80.9 -0.9 56 5-64 639-694 (698)
56 KOG0162|consensus 98.4 1.1E-07 2.5E-12 76.8 2.7 48 82-129 1052-1104(1106)
57 COG5540 RING-finger-containing 98.3 2.2E-07 4.7E-12 68.0 2.0 47 10-57 324-372 (374)
58 KOG2856|consensus 98.2 2.2E-07 4.8E-12 69.6 -0.1 47 82-128 415-468 (472)
59 PF12861 zf-Apc11: Anaphase-pr 98.2 1.1E-06 2.3E-11 52.9 2.8 50 8-57 20-82 (85)
60 PF07653 SH3_2: Variant SH3 do 98.2 2.7E-06 5.8E-11 47.6 4.2 36 119-154 19-55 (55)
61 KOG2879|consensus 98.2 9.4E-07 2E-11 63.9 2.8 51 6-57 236-287 (298)
62 KOG0824|consensus 98.2 5.3E-07 1.1E-11 65.9 1.6 47 9-57 7-53 (324)
63 COG5152 Uncharacterized conser 98.2 3.4E-07 7.4E-12 63.1 0.5 46 9-57 196-241 (259)
64 PF11789 zf-Nse: Zinc-finger o 98.1 8.4E-07 1.8E-11 49.8 1.2 44 7-51 9-53 (57)
65 KOG1039|consensus 98.1 9.9E-07 2.1E-11 66.7 0.7 50 8-57 160-221 (344)
66 KOG2070|consensus 98.0 3.3E-06 7.1E-11 65.8 2.2 36 119-154 37-72 (661)
67 KOG1843|consensus 97.9 4.3E-06 9.4E-11 63.6 2.0 46 83-128 418-470 (473)
68 KOG0515|consensus 97.9 5.2E-06 1.1E-10 65.3 1.8 44 90-153 697-740 (752)
69 KOG1264|consensus 97.9 3.6E-06 7.8E-11 69.2 0.9 49 82-130 775-829 (1267)
70 KOG1813|consensus 97.9 4.6E-06 1E-10 60.9 1.2 45 10-57 242-286 (313)
71 KOG1734|consensus 97.9 3.3E-06 7.1E-11 61.0 -0.0 59 8-68 223-290 (328)
72 KOG0804|consensus 97.8 6.5E-06 1.4E-10 63.4 1.1 48 6-57 172-222 (493)
73 PF11793 FANCL_C: FANCL C-term 97.8 7E-06 1.5E-10 48.2 0.9 49 9-57 2-66 (70)
74 KOG2546|consensus 97.8 3.1E-06 6.8E-11 64.7 -0.7 25 131-155 455-479 (483)
75 KOG0297|consensus 97.8 1.3E-05 2.9E-10 62.2 2.6 50 5-57 17-67 (391)
76 KOG2546|consensus 97.8 8.3E-06 1.8E-10 62.4 1.0 48 83-130 425-477 (483)
77 KOG4172|consensus 97.7 7.2E-06 1.6E-10 44.6 -0.6 47 9-57 7-54 (62)
78 KOG3601|consensus 97.6 1.4E-05 3.1E-10 55.9 0.6 45 84-128 166-215 (222)
79 smart00744 RINGv The RING-vari 97.6 4.2E-05 9.1E-10 41.6 2.3 43 11-53 1-49 (49)
80 KOG1702|consensus 97.6 7.3E-05 1.6E-09 52.1 3.8 46 84-129 210-262 (264)
81 KOG3655|consensus 97.6 1.8E-05 3.9E-10 61.4 0.8 51 82-154 428-483 (484)
82 KOG3523|consensus 97.6 1.1E-05 2.5E-10 64.2 -1.0 41 90-130 622-664 (695)
83 KOG4792|consensus 97.6 0.00011 2.4E-09 52.1 3.9 44 87-130 240-283 (293)
84 KOG1002|consensus 97.5 2.4E-05 5.1E-10 61.7 0.4 50 7-57 534-586 (791)
85 KOG4185|consensus 97.5 4.9E-05 1.1E-09 57.0 1.8 67 9-76 3-77 (296)
86 smart00326 SH3 Src homology 3 97.5 0.0001 2.2E-09 40.9 2.5 24 131-154 34-58 (58)
87 KOG4265|consensus 97.5 6E-05 1.3E-09 56.7 1.9 46 9-57 290-336 (349)
88 KOG4367|consensus 97.5 5.8E-05 1.3E-09 58.2 1.8 37 6-43 1-37 (699)
89 COG5222 Uncharacterized conser 97.5 4.5E-05 9.7E-10 56.1 1.2 44 10-54 275-318 (427)
90 COG5219 Uncharacterized conser 97.4 3.1E-05 6.7E-10 64.8 0.2 51 7-57 1467-1523(1525)
91 KOG1785|consensus 97.4 4.7E-05 1E-09 58.1 1.0 46 11-57 371-416 (563)
92 KOG3875|consensus 97.4 3.2E-05 6.9E-10 57.1 0.0 57 82-156 269-332 (362)
93 KOG1451|consensus 97.3 0.00019 4.2E-09 57.4 2.8 40 90-129 770-810 (812)
94 COG5194 APC11 Component of SCF 97.3 0.00012 2.7E-09 43.1 1.2 29 27-57 53-81 (88)
95 cd00174 SH3 Src homology 3 dom 97.2 0.0003 6.5E-09 38.4 2.5 24 130-153 30-54 (54)
96 KOG2222|consensus 97.2 7.3E-05 1.6E-09 58.5 -0.6 48 83-130 550-602 (848)
97 KOG1941|consensus 97.1 0.00013 2.9E-09 55.5 0.6 48 8-55 364-414 (518)
98 PF14447 Prok-RING_4: Prokaryo 97.1 0.00023 5.1E-09 39.1 1.4 45 8-57 6-50 (55)
99 KOG3655|consensus 97.1 0.00012 2.6E-09 56.9 0.3 16 130-147 458-473 (484)
100 KOG3002|consensus 97.1 0.00035 7.6E-09 52.3 2.2 61 7-77 46-106 (299)
101 KOG3725|consensus 97.0 6.3E-05 1.4E-09 54.3 -2.3 53 81-154 317-374 (375)
102 KOG0828|consensus 96.9 0.00027 5.8E-09 55.4 0.7 51 6-57 568-634 (636)
103 KOG1493|consensus 96.9 0.00021 4.6E-09 41.7 -0.1 47 11-57 22-81 (84)
104 KOG0827|consensus 96.9 0.00046 1E-08 52.6 1.5 45 10-54 5-53 (465)
105 KOG1118|consensus 96.8 0.00047 1E-08 51.0 1.1 18 113-130 343-360 (366)
106 KOG1264|consensus 96.8 0.00059 1.3E-08 56.7 1.5 36 121-156 796-832 (1267)
107 PF14570 zf-RING_4: RING/Ubox 96.8 0.00078 1.7E-08 36.1 1.3 44 12-56 1-47 (48)
108 KOG2930|consensus 96.7 0.00071 1.5E-08 41.9 1.1 27 27-55 80-106 (114)
109 KOG0825|consensus 96.7 0.00031 6.6E-09 58.0 -0.7 47 9-57 123-171 (1134)
110 KOG2856|consensus 96.6 0.00042 9E-09 52.5 -0.3 22 133-154 449-471 (472)
111 PF00018 SH3_1: SH3 domain; I 96.6 0.0043 9.4E-08 33.3 3.8 22 127-148 25-48 (48)
112 KOG4692|consensus 96.6 0.0011 2.3E-08 50.2 1.8 48 7-57 420-467 (489)
113 KOG1645|consensus 96.6 0.00074 1.6E-08 51.8 0.9 48 9-56 4-55 (463)
114 KOG4575|consensus 96.6 0.0029 6.3E-08 51.3 4.1 47 84-130 11-64 (874)
115 KOG3039|consensus 96.6 0.0014 3E-08 47.2 2.1 48 8-57 220-270 (303)
116 KOG4275|consensus 96.3 0.00071 1.5E-08 49.7 -0.6 42 9-57 300-342 (350)
117 KOG0826|consensus 96.3 0.0024 5.2E-08 47.8 2.0 47 9-57 300-346 (357)
118 KOG1001|consensus 96.3 0.0015 3.2E-08 54.2 1.0 46 10-57 455-500 (674)
119 KOG1451|consensus 96.3 0.0016 3.6E-08 52.3 1.0 24 131-154 789-812 (812)
120 KOG1571|consensus 96.2 0.0035 7.5E-08 47.5 2.5 46 6-57 302-347 (355)
121 KOG0162|consensus 96.2 0.002 4.3E-08 53.2 1.3 23 131-153 1083-1105(1106)
122 KOG4278|consensus 96.2 0.011 2.3E-07 48.7 5.2 78 81-158 90-185 (1157)
123 KOG1843|consensus 96.2 0.00088 1.9E-08 51.4 -0.8 24 131-154 450-473 (473)
124 KOG1814|consensus 96.2 0.0016 3.4E-08 50.1 0.6 48 7-54 182-237 (445)
125 KOG4773|consensus 96.2 0.0008 1.7E-08 50.6 -1.2 41 90-130 189-229 (386)
126 KOG2817|consensus 96.2 0.0039 8.6E-08 47.8 2.5 51 6-56 331-384 (394)
127 PF05290 Baculo_IE-1: Baculovi 96.1 0.003 6.5E-08 41.2 1.5 49 9-57 80-132 (140)
128 KOG4739|consensus 96.1 0.0019 4E-08 46.4 0.4 44 10-57 4-48 (233)
129 KOG3775|consensus 96.0 0.0083 1.8E-07 45.8 3.7 41 90-130 276-318 (482)
130 PF08746 zf-RING-like: RING-li 96.0 0.0063 1.4E-07 32.0 2.1 40 12-52 1-43 (43)
131 KOG3800|consensus 96.0 0.005 1.1E-07 45.3 2.3 46 11-57 2-51 (300)
132 PF02891 zf-MIZ: MIZ/SP-RING z 95.9 0.0057 1.2E-07 33.3 1.8 46 9-55 2-50 (50)
133 COG5236 Uncharacterized conser 95.8 0.0047 1E-07 46.7 1.5 49 7-56 59-107 (493)
134 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.0071 1.5E-07 44.6 2.4 49 6-57 110-161 (260)
135 KOG2528|consensus 95.6 0.0063 1.4E-07 47.4 1.5 48 83-130 4-58 (490)
136 PF10367 Vps39_2: Vacuolar sor 95.6 0.0056 1.2E-07 38.7 1.1 33 7-39 76-109 (109)
137 KOG2114|consensus 95.5 0.0062 1.3E-07 51.0 1.3 43 9-56 840-882 (933)
138 PHA02825 LAP/PHD finger-like p 95.4 0.017 3.7E-07 39.0 2.9 52 4-57 3-59 (162)
139 KOG3161|consensus 95.4 0.004 8.7E-08 50.6 -0.2 62 6-72 8-75 (861)
140 PF12906 RINGv: RING-variant d 95.1 0.018 3.9E-07 30.9 1.9 41 12-52 1-47 (47)
141 KOG1702|consensus 95.0 0.025 5.4E-07 39.8 2.9 25 130-154 238-264 (264)
142 KOG2932|consensus 95.0 0.013 2.9E-07 43.6 1.5 42 11-56 92-133 (389)
143 KOG3632|consensus 94.9 0.019 4.2E-07 49.0 2.4 41 90-130 1265-1306(1335)
144 KOG4445|consensus 94.9 0.0083 1.8E-07 44.5 0.2 50 8-57 114-186 (368)
145 COG5220 TFB3 Cdk activating ki 94.8 0.0099 2.1E-07 42.7 0.5 55 1-56 2-63 (314)
146 KOG4773|consensus 94.5 0.027 5.9E-07 42.7 2.2 28 131-158 207-234 (386)
147 PF08239 SH3_3: Bacterial SH3 94.5 0.076 1.6E-06 29.1 3.5 36 94-129 18-55 (55)
148 KOG0197|consensus 94.4 0.018 4E-07 45.6 1.2 58 83-140 13-89 (468)
149 KOG0609|consensus 94.1 0.023 4.9E-07 45.4 1.1 40 90-129 235-279 (542)
150 KOG1940|consensus 94.0 0.026 5.7E-07 41.7 1.3 44 9-54 158-204 (276)
151 PHA03096 p28-like protein; Pro 94.0 0.025 5.4E-07 42.2 1.1 45 10-54 179-231 (284)
152 PF03854 zf-P11: P-11 zinc fin 94.0 0.023 4.9E-07 30.2 0.6 32 24-57 14-46 (50)
153 KOG4362|consensus 93.9 0.015 3.3E-07 47.9 -0.2 51 6-57 18-69 (684)
154 KOG4429|consensus 93.6 0.022 4.7E-07 42.2 0.2 40 90-129 377-416 (421)
155 PF05883 Baculo_RING: Baculovi 93.4 0.024 5.1E-07 37.3 0.2 34 9-42 26-67 (134)
156 COG5175 MOT2 Transcriptional r 93.3 0.047 1E-06 41.3 1.5 48 8-57 13-64 (480)
157 COG5109 Uncharacterized conser 93.2 0.059 1.3E-06 40.4 1.9 51 6-56 333-386 (396)
158 smart00287 SH3b Bacterial SH3 92.8 0.29 6.2E-06 27.5 4.1 35 94-128 26-61 (63)
159 KOG0298|consensus 92.4 0.032 7E-07 48.9 -0.3 47 8-56 1152-1198(1394)
160 PHA02862 5L protein; Provision 92.2 0.13 2.7E-06 34.3 2.2 46 10-57 3-53 (156)
161 PF10571 UPF0547: Uncharacteri 92.1 0.069 1.5E-06 24.8 0.7 9 12-20 3-11 (26)
162 KOG3970|consensus 92.1 0.13 2.8E-06 36.8 2.3 48 9-56 50-104 (299)
163 PF07191 zinc-ribbons_6: zinc- 91.8 0.023 5E-07 33.0 -1.3 41 9-57 1-41 (70)
164 PF10272 Tmpp129: Putative tra 91.5 0.1 2.2E-06 40.2 1.4 30 28-57 311-351 (358)
165 KOG1100|consensus 91.4 0.08 1.7E-06 37.7 0.8 39 12-57 161-200 (207)
166 KOG1952|consensus 90.9 0.12 2.5E-06 43.8 1.3 48 7-54 189-244 (950)
167 KOG2222|consensus 90.8 0.067 1.4E-06 42.5 -0.1 31 125-155 574-604 (848)
168 KOG1428|consensus 90.7 0.19 4E-06 45.4 2.3 50 8-57 3485-3544(3738)
169 KOG1812|consensus 90.4 0.11 2.4E-06 40.6 0.8 46 9-54 146-198 (384)
170 KOG3039|consensus 90.3 0.21 4.6E-06 36.2 2.0 37 5-42 39-75 (303)
171 KOG3268|consensus 90.2 0.2 4.3E-06 34.5 1.7 31 27-57 189-228 (234)
172 PF07800 DUF1644: Protein of u 89.7 0.32 6.9E-06 32.9 2.4 34 8-42 1-47 (162)
173 KOG4575|consensus 89.5 0.21 4.6E-06 41.0 1.7 25 130-154 38-65 (874)
174 KOG3523|consensus 89.3 0.036 7.8E-07 45.0 -2.7 36 121-156 630-667 (695)
175 KOG3812|consensus 89.1 0.11 2.4E-06 39.5 -0.2 36 90-125 79-117 (475)
176 KOG2034|consensus 88.8 0.21 4.5E-06 42.5 1.2 37 6-42 814-851 (911)
177 PF06347 SH3_4: Bacterial SH3 88.3 1.4 3.1E-05 24.0 4.1 35 93-128 19-53 (55)
178 KOG1815|consensus 88.3 0.23 5E-06 39.6 1.1 36 8-43 69-104 (444)
179 KOG2528|consensus 88.0 0.16 3.5E-06 39.9 0.1 25 131-155 35-60 (490)
180 KOG0199|consensus 87.1 0.94 2E-05 38.3 3.9 49 82-130 377-431 (1039)
181 PF05605 zf-Di19: Drought indu 87.0 0.17 3.6E-06 27.9 -0.2 40 8-55 1-40 (54)
182 PRK10884 SH3 domain-containing 86.9 0.74 1.6E-05 32.9 2.9 36 94-129 49-86 (206)
183 KOG3579|consensus 86.5 0.38 8.2E-06 35.7 1.3 45 8-52 267-317 (352)
184 KOG3113|consensus 86.1 0.52 1.1E-05 34.4 1.8 47 7-57 109-158 (293)
185 KOG4429|consensus 85.8 0.24 5.1E-06 37.0 -0.0 39 116-154 380-418 (421)
186 KOG3899|consensus 85.3 0.4 8.6E-06 35.7 1.0 30 28-57 325-365 (381)
187 KOG3771|consensus 85.1 0.45 9.7E-06 37.7 1.2 39 81-119 400-444 (460)
188 KOG3775|consensus 84.8 0.54 1.2E-05 36.3 1.4 25 131-155 294-320 (482)
189 KOG2169|consensus 82.8 1.1 2.5E-05 37.4 2.7 72 5-78 302-375 (636)
190 KOG2199|consensus 81.8 0.37 8.1E-06 37.4 -0.4 26 136-161 252-277 (462)
191 COG3813 Uncharacterized protei 80.9 1.9 4.1E-05 25.1 2.4 43 11-57 7-52 (84)
192 PF06906 DUF1272: Protein of u 80.3 3.3 7.2E-05 22.9 3.1 44 10-57 6-52 (57)
193 KOG4278|consensus 80.1 1.1 2.4E-05 37.5 1.7 27 131-157 123-149 (1157)
194 PF14446 Prok-RING_1: Prokaryo 79.8 1.4 3.1E-05 24.2 1.6 31 9-39 5-38 (54)
195 smart00249 PHD PHD zinc finger 78.2 1.2 2.6E-05 22.8 1.0 41 12-52 2-47 (47)
196 KOG3875|consensus 78.1 1 2.2E-05 33.9 0.9 22 109-130 306-329 (362)
197 KOG4185|consensus 78.1 0.37 8.1E-06 36.2 -1.4 45 10-55 208-265 (296)
198 COG3103 SH3 domain protein [Si 78.0 1.8 4E-05 30.8 2.1 38 93-130 48-87 (205)
199 KOG1812|consensus 77.2 1.3 2.8E-05 34.8 1.2 37 9-45 306-346 (384)
200 PF06844 DUF1244: Protein of u 77.1 1.2 2.6E-05 25.5 0.8 13 31-43 11-23 (68)
201 PLN02436 cellulose synthase A 77.0 1.9 4.1E-05 38.0 2.3 46 11-57 38-89 (1094)
202 PF14569 zf-UDP: Zinc-binding 76.2 2.9 6.3E-05 24.8 2.2 47 10-57 10-62 (80)
203 PF00628 PHD: PHD-finger; Int 74.9 1.2 2.6E-05 23.8 0.4 44 11-54 1-50 (51)
204 PLN02189 cellulose synthase 74.6 2.4 5.3E-05 37.2 2.3 46 11-57 36-87 (1040)
205 PLN02638 cellulose synthase A 74.4 2.5 5.4E-05 37.3 2.3 46 11-57 19-70 (1079)
206 KOG0515|consensus 74.4 0.69 1.5E-05 37.5 -0.9 34 90-128 705-738 (752)
207 cd00350 rubredoxin_like Rubred 74.3 2.1 4.6E-05 20.8 1.2 10 46-55 17-26 (33)
208 KOG3565|consensus 74.2 0.72 1.6E-05 38.5 -0.8 40 90-129 592-634 (640)
209 COG5183 SSM4 Protein involved 73.2 3 6.4E-05 35.8 2.4 72 7-78 10-94 (1175)
210 PF10497 zf-4CXXC_R1: Zinc-fin 72.7 2.8 6E-05 26.6 1.7 28 29-56 37-71 (105)
211 PF13240 zinc_ribbon_2: zinc-r 72.6 0.64 1.4E-05 20.8 -0.9 7 48-54 15-21 (23)
212 PF11302 DUF3104: Protein of u 71.6 7.1 0.00015 23.1 3.1 24 92-115 3-32 (75)
213 PF02318 FYVE_2: FYVE-type zin 71.5 0.84 1.8E-05 29.5 -0.9 47 8-55 53-103 (118)
214 smart00743 Agenet Tudor-like d 71.4 7.4 0.00016 21.5 3.2 24 94-117 2-25 (61)
215 KOG4718|consensus 71.3 1.9 4.1E-05 30.7 0.8 46 10-57 182-227 (235)
216 PF14603 hSH3: Helically-exten 68.1 3.9 8.5E-05 24.9 1.6 39 90-128 30-69 (89)
217 PLN02915 cellulose synthase A 67.6 4.2 9.2E-05 35.8 2.2 47 10-57 16-68 (1044)
218 PLN02400 cellulose synthase 67.2 3.3 7.2E-05 36.6 1.6 46 11-57 38-89 (1085)
219 COG4647 AcxC Acetone carboxyla 67.2 2.8 6.1E-05 27.4 0.9 21 14-35 62-82 (165)
220 PLN02195 cellulose synthase A 66.9 4.8 0.0001 35.3 2.4 47 10-57 7-59 (977)
221 PRK13914 invasion associated s 66.8 8.3 0.00018 31.2 3.6 36 94-129 104-140 (481)
222 KOG0825|consensus 65.5 3.6 7.7E-05 35.2 1.4 48 9-56 96-153 (1134)
223 PF09538 FYDLN_acid: Protein o 65.1 5.3 0.00011 25.4 1.8 13 45-57 25-37 (108)
224 KOG2807|consensus 64.3 5.7 0.00012 30.3 2.1 42 10-53 331-374 (378)
225 KOG0040|consensus 63.3 0.22 4.8E-06 44.9 -6.0 41 90-130 982-1022(2399)
226 KOG3557|consensus 61.8 2.2 4.8E-05 35.4 -0.4 47 83-130 502-554 (721)
227 PF01363 FYVE: FYVE zinc finge 61.4 4.8 0.0001 23.0 1.1 32 8-39 8-42 (69)
228 smart00647 IBR In Between Ring 61.3 2.2 4.8E-05 23.8 -0.4 31 10-40 19-58 (64)
229 PF07975 C1_4: TFIIH C1-like d 61.1 5.1 0.00011 21.8 1.1 40 12-53 2-50 (51)
230 KOG2231|consensus 59.4 6.3 0.00014 33.2 1.8 46 11-57 2-52 (669)
231 PF09297 zf-NADH-PPase: NADH p 59.4 1.4 3E-05 21.3 -1.2 25 30-54 3-29 (32)
232 PF05502 Dynactin_p62: Dynacti 59.2 3.2 6.9E-05 33.6 0.1 52 6-57 2-63 (483)
233 PF14353 CpXC: CpXC protein 58.7 7.7 0.00017 25.2 1.8 12 46-57 38-49 (128)
234 smart00154 ZnF_AN1 AN1-like Zi 58.1 8.7 0.00019 19.5 1.6 24 12-35 1-25 (39)
235 KOG0197|consensus 57.3 1.7 3.8E-05 34.8 -1.7 44 116-159 28-74 (468)
236 PF00412 LIM: LIM domain; Int 56.9 8.9 0.00019 20.7 1.7 26 12-37 1-27 (58)
237 cd00065 FYVE FYVE domain; Zinc 56.9 6.7 0.00015 21.3 1.1 32 10-41 3-37 (57)
238 PF13248 zf-ribbon_3: zinc-rib 56.5 2.2 4.8E-05 19.5 -0.7 7 48-54 18-24 (26)
239 smart00132 LIM Zinc-binding do 56.3 9.6 0.00021 18.4 1.6 36 11-56 1-37 (39)
240 PF12773 DZR: Double zinc ribb 55.9 7.4 0.00016 20.6 1.2 27 31-57 13-40 (50)
241 smart00064 FYVE Protein presen 55.9 8.4 0.00018 21.9 1.5 33 9-41 10-45 (68)
242 PF10235 Cript: Microtubule-as 55.8 7 0.00015 24.0 1.1 36 10-57 45-80 (90)
243 KOG0824|consensus 55.8 4.9 0.00011 30.3 0.6 49 7-57 103-151 (324)
244 PF04423 Rad50_zn_hook: Rad50 53.8 4.8 0.0001 21.9 0.2 10 48-57 22-31 (54)
245 PRK11088 rrmA 23S rRNA methylt 53.6 8.3 0.00018 28.5 1.5 24 9-32 2-27 (272)
246 TIGR00622 ssl1 transcription f 53.3 10 0.00022 24.3 1.6 41 11-53 57-110 (112)
247 KOG3799|consensus 53.3 7.4 0.00016 25.7 1.0 28 7-39 63-90 (169)
248 KOG2066|consensus 52.8 6.1 0.00013 33.7 0.7 35 9-43 784-824 (846)
249 KOG2068|consensus 52.7 8.9 0.00019 29.3 1.5 46 10-57 250-298 (327)
250 COG0068 HypF Hydrogenase matur 52.2 8.1 0.00018 32.7 1.3 49 8-56 100-183 (750)
251 KOG2462|consensus 51.9 8.7 0.00019 28.6 1.3 51 7-57 159-226 (279)
252 PF04216 FdhE: Protein involve 51.8 2.3 5.1E-05 31.9 -1.7 46 8-56 171-221 (290)
253 PF12913 SH3_6: SH3 domain of 51.6 40 0.00087 18.5 3.7 35 91-125 19-54 (54)
254 PF06827 zf-FPG_IleRS: Zinc fi 51.6 5 0.00011 18.9 0.0 25 11-36 3-27 (30)
255 KOG2979|consensus 50.8 7.9 0.00017 28.5 0.9 47 9-55 176-222 (262)
256 KOG0309|consensus 50.7 9.2 0.0002 32.7 1.4 40 10-51 1029-1069(1081)
257 KOG3565|consensus 49.4 4.7 0.0001 33.9 -0.4 26 131-156 611-638 (640)
258 KOG2113|consensus 49.1 11 0.00024 28.7 1.5 44 7-55 341-385 (394)
259 PF13719 zinc_ribbon_5: zinc-r 48.9 4.6 0.0001 20.2 -0.3 11 10-20 3-13 (37)
260 KOG3842|consensus 48.8 19 0.0004 27.6 2.6 49 8-57 340-414 (429)
261 COG3492 Uncharacterized protei 48.7 7.5 0.00016 23.8 0.5 13 31-43 42-54 (104)
262 KOG3705|consensus 48.6 19 0.00042 28.5 2.7 40 90-129 523-564 (580)
263 KOG3053|consensus 47.2 8.8 0.00019 28.3 0.7 51 7-57 18-82 (293)
264 KOG1244|consensus 47.2 5 0.00011 29.8 -0.5 46 11-57 283-333 (336)
265 PF01485 IBR: IBR domain; Int 47.1 3.8 8.3E-05 22.7 -0.9 31 10-40 19-58 (64)
266 PF01428 zf-AN1: AN1-like Zinc 46.6 12 0.00026 19.3 1.0 22 15-37 6-28 (43)
267 KOG1074|consensus 46.2 16 0.00034 31.7 2.1 15 6-20 602-616 (958)
268 PF10146 zf-C4H2: Zinc finger- 46.0 11 0.00024 27.4 1.1 23 33-57 197-219 (230)
269 PF10083 DUF2321: Uncharacteri 45.9 9.2 0.0002 25.9 0.6 23 30-57 28-50 (158)
270 TIGR02300 FYDLN_acid conserved 45.6 15 0.00033 24.0 1.6 13 45-57 25-37 (129)
271 KOG3896|consensus 45.4 5.8 0.00013 30.5 -0.4 52 6-57 21-81 (449)
272 COG2816 NPY1 NTP pyrophosphohy 45.1 8.5 0.00018 28.8 0.4 30 28-57 109-140 (279)
273 KOG0827|consensus 44.3 2 4.3E-05 33.5 -3.0 45 11-57 198-245 (465)
274 KOG3557|consensus 44.2 7.5 0.00016 32.4 0.0 29 131-159 531-560 (721)
275 KOG0314|consensus 43.1 7.8 0.00017 31.0 -0.1 48 5-56 215-265 (448)
276 PF15616 TerY-C: TerY-C metal 43.0 15 0.00033 24.2 1.3 45 4-57 72-116 (131)
277 smart00734 ZnF_Rad18 Rad18-lik 42.1 11 0.00025 17.2 0.4 8 49-56 4-11 (26)
278 PRK14890 putative Zn-ribbon RN 40.5 26 0.00057 19.7 1.8 10 45-54 47-56 (59)
279 PF14319 Zn_Tnp_IS91: Transpos 39.1 16 0.00035 23.3 1.0 24 11-37 44-67 (111)
280 KOG4384|consensus 38.8 15 0.00032 28.4 0.9 41 90-130 152-192 (361)
281 KOG4451|consensus 38.1 22 0.00048 25.8 1.6 23 33-57 252-274 (286)
282 PF13913 zf-C2HC_2: zinc-finge 38.1 16 0.00034 16.5 0.6 8 49-56 5-12 (25)
283 COG4306 Uncharacterized protei 37.4 16 0.00035 23.8 0.7 22 31-57 29-50 (160)
284 TIGR01562 FdhE formate dehydro 37.0 10 0.00022 28.9 -0.2 44 9-55 184-233 (305)
285 KOG0040|consensus 36.9 5.3 0.00012 36.8 -1.9 27 131-157 1000-1026(2399)
286 cd04718 BAH_plant_2 BAH, or Br 36.9 13 0.00027 25.1 0.2 25 32-56 2-28 (148)
287 COG4338 Uncharacterized protei 36.8 11 0.00023 20.2 -0.1 11 47-57 13-23 (54)
288 PF10013 DUF2256: Uncharacteri 36.6 17 0.00037 18.9 0.6 12 46-57 8-19 (42)
289 PF14205 Cys_rich_KTR: Cystein 35.0 24 0.00052 19.4 1.1 10 10-19 5-14 (55)
290 KOG4443|consensus 34.5 22 0.00047 29.9 1.2 53 5-57 14-73 (694)
291 COG5627 MMS21 DNA repair prote 34.2 22 0.00047 26.0 1.0 45 9-54 189-234 (275)
292 PF07503 zf-HYPF: HypF finger; 34.1 18 0.00039 17.9 0.5 24 33-56 2-31 (35)
293 cd00729 rubredoxin_SM Rubredox 34.1 8.4 0.00018 18.9 -0.7 8 48-55 20-27 (34)
294 PF08772 NOB1_Zn_bind: Nin one 33.8 14 0.0003 21.7 0.0 12 9-20 9-20 (73)
295 PF06750 DiS_P_DiS: Bacterial 33.3 39 0.00085 20.7 2.0 17 39-57 53-69 (92)
296 PF04710 Pellino: Pellino; In 33.3 14 0.00031 29.1 0.0 33 24-56 305-338 (416)
297 PF00096 zf-C2H2: Zinc finger, 33.0 15 0.00032 15.6 0.1 10 48-57 2-11 (23)
298 KOG1609|consensus 33.0 36 0.00077 25.5 2.1 48 10-57 79-134 (323)
299 KOG1829|consensus 33.0 13 0.00028 30.9 -0.3 23 27-54 536-558 (580)
300 PRK04023 DNA polymerase II lar 32.9 28 0.00061 31.0 1.7 45 8-57 625-674 (1121)
301 COG1645 Uncharacterized Zn-fin 32.6 11 0.00023 24.9 -0.7 22 33-54 31-52 (131)
302 KOG0269|consensus 32.6 44 0.00096 28.8 2.7 43 10-55 780-826 (839)
303 PRK11595 DNA utilization prote 32.1 26 0.00056 25.3 1.2 38 11-56 7-44 (227)
304 PF09237 GAGA: GAGA factor; I 31.6 18 0.00038 19.7 0.2 13 45-57 23-35 (54)
305 PF09723 Zn-ribbon_8: Zinc rib 31.5 16 0.00035 18.8 0.0 25 27-54 10-34 (42)
306 KOG1356|consensus 31.3 17 0.00037 31.4 0.2 32 10-41 230-262 (889)
307 PF13894 zf-C2H2_4: C2H2-type 30.7 18 0.00039 15.1 0.1 10 48-57 2-11 (24)
308 PRK03564 formate dehydrogenase 30.4 23 0.00049 27.1 0.7 44 8-54 186-234 (309)
309 PRK00420 hypothetical protein; 30.0 16 0.00034 23.5 -0.2 13 45-57 39-51 (112)
310 cd00730 rubredoxin Rubredoxin; 29.2 27 0.00058 18.9 0.6 12 45-56 33-44 (50)
311 TIGR00100 hypA hydrogenase nic 28.8 13 0.00029 23.8 -0.7 9 47-55 87-95 (115)
312 PRK01343 zinc-binding protein; 28.2 28 0.00061 19.4 0.6 12 46-57 9-20 (57)
313 KOG3771|consensus 27.0 14 0.00031 29.6 -0.9 24 131-154 433-456 (460)
314 PF11023 DUF2614: Protein of u 26.8 29 0.00064 22.2 0.6 25 33-57 72-96 (114)
315 PF14169 YdjO: Cold-inducible 26.6 35 0.00075 19.2 0.8 38 27-64 20-57 (59)
316 PRK12380 hydrogenase nickel in 26.5 15 0.00032 23.5 -0.8 8 47-54 87-94 (113)
317 PLN02248 cellulose synthase-li 26.4 45 0.00097 30.1 1.8 29 27-57 149-177 (1135)
318 smart00290 ZnF_UBP Ubiquitin C 26.4 43 0.00093 17.5 1.2 24 12-36 2-25 (50)
319 KOG1701|consensus 26.3 26 0.00057 27.9 0.4 35 8-42 301-335 (468)
320 PF03884 DUF329: Domain of unk 25.8 21 0.00045 19.9 -0.2 11 47-57 3-13 (57)
321 TIGR01384 TFS_arch transcripti 24.9 20 0.00044 22.3 -0.3 11 46-56 16-26 (104)
322 PF08882 Acetone_carb_G: Aceto 24.5 39 0.00085 21.6 0.9 12 23-34 24-35 (112)
323 PF13717 zinc_ribbon_4: zinc-r 24.5 26 0.00056 17.3 0.1 11 47-57 3-13 (36)
324 KOG3726|consensus 24.5 39 0.00085 28.7 1.1 41 11-56 656-699 (717)
325 PRK00564 hypA hydrogenase nick 23.8 25 0.00054 22.6 -0.1 24 32-55 73-97 (117)
326 PF12907 zf-met2: Zinc-binding 23.8 22 0.00048 18.2 -0.3 11 47-57 2-12 (40)
327 COG3807 Uncharacterized protei 23.3 72 0.0016 21.7 2.0 16 131-146 141-156 (171)
328 PHA02945 interferon resistance 23.2 1.8E+02 0.0038 17.8 3.5 41 97-138 11-55 (88)
329 PF13465 zf-H2C2_2: Zinc-finge 22.9 30 0.00064 15.5 0.1 13 45-57 13-25 (26)
330 PF12660 zf-TFIIIC: Putative z 22.7 19 0.00041 22.4 -0.8 47 10-57 15-66 (99)
331 COG4640 Predicted membrane pro 22.5 28 0.00061 27.5 -0.0 24 32-57 3-26 (465)
332 KOG2789|consensus 22.3 24 0.00052 27.9 -0.5 32 9-40 74-106 (482)
333 COG4951 Uncharacterized protei 22.2 29 0.00062 26.0 -0.1 17 133-149 67-83 (361)
334 PF11781 RRN7: RNA polymerase 22.1 52 0.0011 16.3 0.9 10 10-19 9-18 (36)
335 KOG1314|consensus 22.1 51 0.0011 25.7 1.2 46 90-136 331-388 (414)
336 PF12874 zf-met: Zinc-finger o 22.1 34 0.00073 14.8 0.2 8 12-19 3-10 (25)
337 PRK00418 DNA gyrase inhibitor; 21.6 44 0.00094 19.0 0.6 11 47-57 7-17 (62)
338 PF03119 DNA_ligase_ZBD: NAD-d 21.6 40 0.00087 15.6 0.4 10 48-57 1-10 (28)
339 KOG1769|consensus 21.4 1.1E+02 0.0025 19.1 2.4 43 64-106 38-92 (99)
340 TIGR00375 conserved hypothetic 20.9 32 0.00068 27.1 -0.1 11 47-58 260-270 (374)
341 PF05641 Agenet: Agenet domain 20.8 1.4E+02 0.0031 16.8 2.7 22 95-116 1-25 (68)
342 PF13912 zf-C2H2_6: C2H2-type 20.5 38 0.00082 15.0 0.2 10 11-20 3-12 (27)
343 TIGR00373 conserved hypothetic 20.4 24 0.00052 24.0 -0.7 12 46-57 128-139 (158)
344 PF10186 Atg14: UV radiation r 20.4 65 0.0014 23.9 1.5 23 11-42 1-23 (302)
345 PF11809 DUF3330: Domain of un 20.4 34 0.00074 19.7 0.0 36 9-44 11-51 (70)
346 COG4888 Uncharacterized Zn rib 20.1 22 0.00049 22.2 -0.8 32 28-59 28-59 (104)
No 1
>KOG4348|consensus
Probab=99.67 E-value=9.7e-18 Score=126.30 Aligned_cols=41 Identities=32% Similarity=0.694 Sum_probs=39.6
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
.++|.+..||+|.+.....++||.|.++|+.|+||+|||..
T Consensus 114 dDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVke 154 (627)
T KOG4348|consen 114 DDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKE 154 (627)
T ss_pred CceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhcee
Confidence 78999999999999999999999999999999999999996
No 2
>KOG4225|consensus
Probab=99.63 E-value=1.8e-16 Score=119.45 Aligned_cols=74 Identities=43% Similarity=0.855 Sum_probs=68.9
Q ss_pred Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe----------------------------
Q psy9673 84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI---------------------------- 130 (162)
Q Consensus 84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~---------------------------- 130 (162)
++++|+ ..+|.|.+||+|.|+++.|.+|++|+.+|+.|+||+|||++
T Consensus 233 aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~y~ 312 (489)
T KOG4225|consen 233 ARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAKYN 312 (489)
T ss_pred hhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccccCC
Confidence 667777 78999999999999999999999999999999999999997
Q ss_pred -----------------------cCCeEEEEEC--CeEEeecCCCeEeccCC
Q psy9673 131 -----------------------DNNWFYGEVN--GTTGAFPMSYVQFVWYL 157 (162)
Q Consensus 131 -----------------------~~~w~~g~~~--g~~g~~p~~~~~~~~~~ 157 (162)
|+.|++|++. |++|+||.+||+++...
T Consensus 313 F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~ 364 (489)
T KOG4225|consen 313 FNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSP 364 (489)
T ss_pred CCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhcc
Confidence 8999999997 89999999999998654
No 3
>KOG4226|consensus
Probab=99.61 E-value=5.9e-16 Score=110.56 Aligned_cols=73 Identities=30% Similarity=0.546 Sum_probs=67.5
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe---------------------------------------
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI--------------------------------------- 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~--------------------------------------- 130 (162)
+++|++.+|..+.|.++..++||+|..+|..||||+|||..
T Consensus 121 eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~s~vl~vVvaLYsF 200 (379)
T KOG4226|consen 121 EDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQGSRVLHVVVALYSF 200 (379)
T ss_pred ccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCCCCceEEEEEEEEecc
Confidence 88999999999999999999999999999999999999986
Q ss_pred ------------------------cCCeEEEEE-CCeEEeecCCCeEeccCCCCCCC
Q psy9673 131 ------------------------DNNWFYGEV-NGTTGAFPMSYVQFVWYLPIINK 162 (162)
Q Consensus 131 ------------------------~~~w~~g~~-~g~~g~~p~~~~~~~~~~~~~~~ 162 (162)
|-+||..+- .|.+|++|-|||+.+.+-|..||
T Consensus 201 sssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ts~ 257 (379)
T KOG4226|consen 201 SSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPSTSK 257 (379)
T ss_pred cCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccccc
Confidence 679999998 69999999999999988775543
No 4
>KOG4348|consensus
Probab=99.56 E-value=3.3e-16 Score=118.13 Aligned_cols=67 Identities=30% Similarity=0.677 Sum_probs=62.3
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe---------------------------------------
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI--------------------------------------- 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~--------------------------------------- 130 (162)
.++|....|++|.-..+.+.+||+|+++|+.|.||.|||..
T Consensus 15 ddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~l~~~q~v~rtn~ 94 (627)
T KOG4348|consen 15 DDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNPLTVHQQVERTNP 94 (627)
T ss_pred CceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCCccccCcccccCC
Confidence 57899999999998999999999999999999999999975
Q ss_pred -------------------------------------cCCeEEEEECCeEEeecCCCeEeccC
Q psy9673 131 -------------------------------------DNNWFYGEVNGTTGAFPMSYVQFVWY 156 (162)
Q Consensus 131 -------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~~~ 156 (162)
.++||+|.++|++|+||+|||+.+..
T Consensus 95 ~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 95 PPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT 157 (627)
T ss_pred CCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence 78999999999999999999998854
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.51 E-value=9.1e-15 Score=77.33 Aligned_cols=40 Identities=43% Similarity=1.155 Sum_probs=31.4
Q ss_pred cccccccccCCCEEcccCCccchhcHHHHHhcCCC--cccccc
Q psy9673 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKE--LRCPEC 52 (162)
Q Consensus 12 C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~--~~Cp~C 52 (162)
|+||+++|. +|++++|||+||..||.+++...+. +.||.|
T Consensus 1 CpiC~~~~~-~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 9999999999999999999986433 589987
No 6
>KOG1029|consensus
Probab=99.48 E-value=5.6e-15 Score=118.03 Aligned_cols=65 Identities=35% Similarity=0.802 Sum_probs=58.5
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEe--cCC---CCceeeeeEEe----------------------------------
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEV--NGT---TGAFPMSYVQI---------------------------------- 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~---~G~~P~~~v~~---------------------------------- 130 (162)
+..|++.+|++|.+.++.+.+||+|++ +|+ .||||++||++
T Consensus 993 peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v~qviamYdY~AqndDELsF 1072 (1118)
T KOG1029|consen 993 PEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRPVCQVIAMYDYEAQNDDELSF 1072 (1118)
T ss_pred chhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCccceeEEeeccccCCcccccc
Confidence 678999999999999999999999996 454 49999999997
Q ss_pred ------------cCCeEEEEECCeEEeecCCCeEec
Q psy9673 131 ------------DNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 131 ------------~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
+-+||.|+.+|++|+||+|||+..
T Consensus 1073 ~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1073 KKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred cCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 559999999999999999999554
No 7
>KOG1029|consensus
Probab=99.47 E-value=9.3e-15 Score=116.78 Aligned_cols=64 Identities=39% Similarity=0.784 Sum_probs=58.9
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe---------------------------------------
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI--------------------------------------- 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~--------------------------------------- 130 (162)
..+|+|..||+|.|+.+ .+.||.|+..|..||||.+||+.
T Consensus 827 e~dLsFskgd~I~Vlek-qemwW~G~v~g~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~~~~a~~taa~v~~q 905 (1118)
T KOG1029|consen 827 ENDLSFSKGDTITVLEK-QEMWWFGEVAGEIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAAASDATPTAAPVAPQ 905 (1118)
T ss_pred cccccccCCCeeeeehh-ccceecccccCccCcCcHHhhhhccccccccccccCcccccccCccccccccCccccccccc
Confidence 67899999999999999 66899999999999999999993
Q ss_pred -------------------------------cCCeEEEEECCeEEeecCC-CeEec
Q psy9673 131 -------------------------------DNNWFYGEVNGTTGAFPMS-YVQFV 154 (162)
Q Consensus 131 -------------------------------~~~w~~g~~~g~~g~~p~~-~~~~~ 154 (162)
|++||.|.++++.|+||+| |+.+.
T Consensus 906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtekdgeww~gt~~~r~gifPan~y~r~~ 961 (1118)
T KOG1029|consen 906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEKDGEWWTGTCGDREGIFPANYYVRPK 961 (1118)
T ss_pred ceeEEEecccccccCCCccccccceEEEeeccCceeccccCCccccccccceeeeh
Confidence 8999999999999999999 66655
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=1e-13 Score=105.77 Aligned_cols=72 Identities=32% Similarity=0.693 Sum_probs=62.4
Q ss_pred ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673 4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV 80 (162)
Q Consensus 4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~ 80 (162)
..++..+.|+||.++|. .|++++|||+||..|+..++.... .||+|+..+. ...+..|..+.++++.+....
T Consensus 21 ~~Le~~l~C~IC~d~~~-~PvitpCgH~FCs~CI~~~l~~~~--~CP~Cr~~~~--~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQP--KCPLCRAEDQ--ESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhh-CccCCCCCCchhHHHHHHHHhCCC--CCCCCCCccc--cccCccchHHHHHHHHHHHhh
Confidence 45788899999999998 888999999999999999998654 7999999887 457889999999999886533
No 9
>KOG0287|consensus
Probab=99.39 E-value=4.2e-14 Score=103.73 Aligned_cols=72 Identities=35% Similarity=0.742 Sum_probs=63.2
Q ss_pred ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673 4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV 80 (162)
Q Consensus 4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~ 80 (162)
..+.+.|+|.||.++|. .|+++||+|+||..||..++..+. .||.|+.++. ...+..|+.+..|++.+...+
T Consensus 18 k~lD~lLRC~IC~eyf~-ip~itpCsHtfCSlCIR~~L~~~p--~CP~C~~~~~--Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFN-IPMITPCSHTFCSLCIRKFLSYKP--QCPTCCVTVT--ESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred hhhHHHHHHhHHHHHhc-CceeccccchHHHHHHHHHhccCC--CCCceecccc--hhhhhhhhHHHHHHHHHHHHH
Confidence 34667899999999999 999999999999999999999765 8999999998 678899999999988876533
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.39 E-value=3.1e-13 Score=78.21 Aligned_cols=61 Identities=21% Similarity=0.429 Sum_probs=52.8
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhh
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILE 74 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e 74 (162)
++.|+||.+.+. +|++++|||+||..|+.+++..+. .||.|+..+. ..++.+|..+++.++
T Consensus 1 ~~~Cpi~~~~~~-~Pv~~~~G~v~~~~~i~~~~~~~~--~cP~~~~~~~--~~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMK-DPVILPSGQTYERRAIEKWLLSHG--TDPVTGQPLT--HEDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCC-CCEECCCCCEEeHHHHHHHHHHCC--CCCCCcCCCC--hhhceeCHHHHHHHH
Confidence 468999999999 889999999999999999998644 8999999986 567888888877665
No 11
>KOG4792|consensus
Probab=99.38 E-value=1.7e-13 Score=95.57 Aligned_cols=77 Identities=32% Similarity=0.636 Sum_probs=68.2
Q ss_pred eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEEe-------------------------
Q psy9673 82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI------------------------- 130 (162)
Q Consensus 82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~~------------------------- 130 (162)
..++++|+ ..+|.|++|+++.+.++.++.||..+ ..|+.|++|.+||+.
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~ 204 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGG 204 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCC
Confidence 34566776 77899999999999999999999998 689999999999986
Q ss_pred --------------------------------------------------------cCCeEEEEECCeEEeecCCCeEec
Q psy9673 131 --------------------------------------------------------DNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 131 --------------------------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
-.+-|+|+++|+.|.||.+||+..
T Consensus 205 g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 205 GAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT 284 (293)
T ss_pred CCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence 669999999999999999999998
Q ss_pred cCCC
Q psy9673 155 WYLP 158 (162)
Q Consensus 155 ~~~~ 158 (162)
.+-.
T Consensus 285 d~~~ 288 (293)
T KOG4792|consen 285 DVQN 288 (293)
T ss_pred ccCC
Confidence 6543
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.34 E-value=5.4e-13 Score=91.89 Aligned_cols=50 Identities=28% Similarity=0.757 Sum_probs=42.8
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhc--------------CCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS--------------HKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~--------------~~~~~Cp~Cr~~~~ 57 (162)
.+++.|+||++.+. +|++++|||.||..||..|+.. ++...||+||..+.
T Consensus 16 ~~~~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 46789999999998 8899999999999999999752 12358999999886
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.28 E-value=1.4e-12 Score=70.00 Aligned_cols=41 Identities=37% Similarity=1.042 Sum_probs=35.4
Q ss_pred cccccccccc--CCCEEcccCCccchhcHHHHHhcCCCccccccc
Q psy9673 11 ECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53 (162)
Q Consensus 11 ~C~iC~~~~~--~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr 53 (162)
.|+||++.+. +.++.++|+|.||..|+.+|+..+. .||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC--cCCccC
Confidence 5999999994 3678889999999999999999755 899997
No 14
>KOG1118|consensus
Probab=99.28 E-value=1.4e-12 Score=94.70 Aligned_cols=61 Identities=33% Similarity=0.643 Sum_probs=49.2
Q ss_pred cccceeeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCC
Q psy9673 76 LFPLVVSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSY 150 (162)
Q Consensus 76 ~~~~~~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~ 150 (162)
+.....++++++|+ ..+|.|..||+|.+.+.+|+ +||+|+..|++|+||.||
T Consensus 301 ~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIde-----------------------nWyeG~~~g~sG~FPvnY 357 (366)
T KOG1118|consen 301 ASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDE-----------------------NWYEGEKHGESGMFPVNY 357 (366)
T ss_pred cCcccchhheeeeccCCCCCCccCcccCceeeehhhcCc-----------------------chhhheecCccCccccce
Confidence 34455778999998 78999999999999988665 667777778888888888
Q ss_pred eEeccCCCC
Q psy9673 151 VQFVWYLPI 159 (162)
Q Consensus 151 ~~~~~~~~~ 159 (162)
|+++.+++.
T Consensus 358 v~vlvpl~~ 366 (366)
T KOG1118|consen 358 VEVLVPLPQ 366 (366)
T ss_pred eEEeccCCC
Confidence 888888763
No 15
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.27 E-value=5.1e-12 Score=69.23 Aligned_cols=39 Identities=44% Similarity=0.894 Sum_probs=27.3
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v 128 (162)
.++|+|.+||+|.++.+.+++||.|+.+|+.|+||++||
T Consensus 10 ~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV 48 (49)
T PF14604_consen 10 PDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYV 48 (49)
T ss_dssp TTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGE
T ss_pred cCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhC
Confidence 679999999999999887776666665555555555555
No 16
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-12 Score=94.20 Aligned_cols=70 Identities=26% Similarity=0.444 Sum_probs=61.5
Q ss_pred CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV 80 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~ 80 (162)
|...+.|-||.++|. .|..++|||+||..||.+++..+. .||+||.+.. ...++.+..+..+++.+...+
T Consensus 22 LDs~lrC~IC~~~i~-ip~~TtCgHtFCslCIR~hL~~qp--~CP~Cr~~~~--esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 22 LDSMLRCRICDCRIS-IPCETTCGHTFCSLCIRRHLGTQP--FCPVCREDPC--ESRLRGSSGSREINESHARNR 91 (391)
T ss_pred chhHHHhhhhhheee-cceecccccchhHHHHHHHhcCCC--CCccccccHH--hhhcccchhHHHHHHhhhhcc
Confidence 456789999999999 999999999999999999999766 8999999886 568888888888888887655
No 17
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.25 E-value=3.6e-12 Score=66.52 Aligned_cols=38 Identities=45% Similarity=1.225 Sum_probs=32.0
Q ss_pred cccccccccCCC-EEcccCCccchhcHHHHHhcCCCcccccc
Q psy9673 12 CSVCLDRLDTSS-KVLPCQHTFCKKCLEEIVSSHKELRCPEC 52 (162)
Q Consensus 12 C~iC~~~~~~~p-~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~C 52 (162)
|+||++.+. +| +.++|||+||..|+.++++.+ ..||.|
T Consensus 1 C~iC~~~~~-~~~~~~~CGH~fC~~C~~~~~~~~--~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-DPVVVTPCGHSFCKECIEKYLEKN--PKCPVC 39 (39)
T ss_dssp ETTTTSB-S-SEEEECTTSEEEEHHHHHHHHHCT--SB-TTT
T ss_pred CCCCCCccc-CcCEECCCCCchhHHHHHHHHHCc--CCCcCC
Confidence 899999999 56 789999999999999999873 489987
No 18
>KOG4226|consensus
Probab=99.24 E-value=1.1e-11 Score=88.99 Aligned_cols=68 Identities=28% Similarity=0.512 Sum_probs=57.9
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEEe--------------------------------------
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI-------------------------------------- 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~~-------------------------------------- 130 (162)
.++|.++..+.+-+++. ...||+.+ ..++.|++|+|||+.
T Consensus 18 ~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~ 96 (379)
T KOG4226|consen 18 DQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTSARDASPSPSTDA 96 (379)
T ss_pred chhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCCCccccCCCCCccc
Confidence 66888888888877766 44788887 567899999999995
Q ss_pred ------------------------------------------cCCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673 131 ------------------------------------------DNNWFYGEVNGTTGAFPMSYVQFVWYLP 158 (162)
Q Consensus 131 ------------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~~~~~ 158 (162)
.++||.|+.+|.+|+||+|||....+.+
T Consensus 97 ~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~ 166 (379)
T KOG4226|consen 97 EYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSA 166 (379)
T ss_pred cCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhcccc
Confidence 7899999999999999999999887654
No 19
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.23 E-value=1.3e-12 Score=73.61 Aligned_cols=62 Identities=31% Similarity=0.769 Sum_probs=34.1
Q ss_pred cCCCccccccccccccCCCE-EcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhh
Q psy9673 5 TLNDLLECSVCLDRLDTSSK-VLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRIL 73 (162)
Q Consensus 5 ~~~~~l~C~iC~~~~~~~p~-~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~ 73 (162)
.++..+.|++|.+++. .|+ +..|.|.||..|+.+.+.. .||+|..+.- .+++..|..+.+|+
T Consensus 3 ~le~lLrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw--~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAW--IQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--S-S-B---SSS--B-TTTGGGGTTT----B-SSS--B-S---SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhc-CCceeccCccHHHHHHhHHhcCC----CCCCcCChHH--HHHHHhhhhhhccC
Confidence 4567899999999999 664 6789999999999875542 5999999886 67888998887664
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.22 E-value=6e-12 Score=66.46 Aligned_cols=40 Identities=35% Similarity=1.154 Sum_probs=35.5
Q ss_pred cccccccccCCCE-EcccCCccchhcHHHHHhcCCCcccccc
Q psy9673 12 CSVCLDRLDTSSK-VLPCQHTFCKKCLEEIVSSHKELRCPEC 52 (162)
Q Consensus 12 C~iC~~~~~~~p~-~~~C~H~fC~~Cl~~~~~~~~~~~Cp~C 52 (162)
|+||++.+. .+. +++|||+||..|+.+++...+...||.|
T Consensus 1 C~iC~~~~~-~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE-DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS-SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc-CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999 656 9999999999999999996566789987
No 21
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.21 E-value=9.2e-12 Score=68.58 Aligned_cols=47 Identities=36% Similarity=0.967 Sum_probs=39.3
Q ss_pred CccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
++..|.||++... .++.++|||. ||..|+.+++.... .||+||+++.
T Consensus 1 ~~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~--~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKK--KCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTS--BBTTTTBB-S
T ss_pred CcCCCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCC--CCCcCChhhc
Confidence 3678999999988 7899999999 99999999998444 8999999875
No 22
>KOG4225|consensus
Probab=99.20 E-value=1.1e-11 Score=94.01 Aligned_cols=47 Identities=34% Similarity=0.710 Sum_probs=41.8
Q ss_pred Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEec--CCCCceeeeeEEe
Q psy9673 84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQI 130 (162)
Q Consensus 84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~--~~~G~~P~~~v~~ 130 (162)
+.+.|+ ..++++++|+.|.++.+.+.+|++|... ++.|+||.+||++
T Consensus 307 a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev 360 (489)
T KOG4225|consen 307 AIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEV 360 (489)
T ss_pred ccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhh
Confidence 556666 6789999999999999999999999977 6789999999997
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.19 E-value=1.4e-11 Score=88.35 Aligned_cols=49 Identities=24% Similarity=0.729 Sum_probs=40.5
Q ss_pred CCccccccccccccCC-------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTS-------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~-------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.++.+|+||++.+..+ +++++|+|.||..|+.+|+..+. .||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~--tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN--TCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC--CCCCCCCEee
Confidence 3468999999987633 25668999999999999998655 8999999875
No 24
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.18 E-value=9.6e-12 Score=73.93 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=53.5
Q ss_pred CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP 78 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~ 78 (162)
+.|.|+|+.+++. +|+++++||+|+..+|.+|+... ...||.++..+. ...+.+|..++..++.+..
T Consensus 3 ~~f~CpIt~~lM~-dPVi~~~G~tyer~~I~~~l~~~-~~~~P~t~~~l~--~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 3 DEFLCPITGELMR-DPVILPSGHTYERSAIERWLEQN-GGTDPFTRQPLS--ESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp GGGB-TTTSSB-S-SEEEETTSEEEEHHHHHHHHCTT-SSB-TTT-SB-S--GGGSEE-HHHHHHHHHHHH
T ss_pred cccCCcCcCcHhh-CceeCCcCCEEcHHHHHHHHHcC-CCCCCCCCCcCC--cccceECHHHHHHHHHHHH
Confidence 5789999999999 99999999999999999999972 348999999988 6689999999998887754
No 25
>KOG0823|consensus
Probab=99.13 E-value=2.1e-11 Score=85.56 Aligned_cols=49 Identities=31% Similarity=0.793 Sum_probs=42.8
Q ss_pred CccccccccccccCCCEEcccCCccchhcHHHHHhcC-CCccccccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~ 57 (162)
..+.|.||++.-+ +|+++.|||.||.-||.+|+..+ ....||+|+..++
T Consensus 46 ~~FdCNICLd~ak-dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLAK-DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CceeeeeeccccC-CCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 4678999999999 99999999999999999999854 3457899999775
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.13 E-value=2.2e-11 Score=64.36 Aligned_cols=38 Identities=39% Similarity=1.142 Sum_probs=22.7
Q ss_pred cccccccccC---CCEEcccCCccchhcHHHHHhcC--CCcccc
Q psy9673 12 CSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSH--KELRCP 50 (162)
Q Consensus 12 C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~--~~~~Cp 50 (162)
|+||.+ +.+ .|++++|||+||..|+.++...+ +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 752 38999999999999999988854 456776
No 27
>KOG0317|consensus
Probab=99.12 E-value=2.7e-11 Score=87.48 Aligned_cols=48 Identities=33% Similarity=0.805 Sum_probs=43.6
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+....|.+|++... .|.-+||||.||..||..|...+. .||+||..++
T Consensus 237 ~a~~kC~LCLe~~~-~pSaTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRS-NPSATPCGHIFCWSCILEWCSEKA--ECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCC-CCCcCcCcchHHHHHHHHHHcccc--CCCcccccCC
Confidence 45678999999999 889999999999999999999776 6999999886
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.09 E-value=5.7e-11 Score=63.57 Aligned_cols=42 Identities=33% Similarity=1.081 Sum_probs=35.3
Q ss_pred ccccccccc--cCCCEEcccCCccchhcHHHHHhcCCCcccccccc
Q psy9673 11 ECSVCLDRL--DTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 11 ~C~iC~~~~--~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
.|++|.+.+ ...+.+++|||+||..|+.... .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 489999999 3368999999999999999877 34458999974
No 29
>KOG2199|consensus
Probab=99.07 E-value=2e-11 Score=91.56 Aligned_cols=48 Identities=33% Similarity=0.607 Sum_probs=33.8
Q ss_pred eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673 81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128 (162)
Q Consensus 81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v 128 (162)
..+++++|| ..||+|+.||+|.|++..+.+||.|+..+..|+||+|||
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfV 267 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFV 267 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhh
Confidence 456788998 889999999999999997775544444444444444433
No 30
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.05 E-value=3.5e-10 Score=63.50 Aligned_cols=40 Identities=45% Similarity=0.804 Sum_probs=24.8
Q ss_pred cceeeccCCCEEEEe-EecCCCeEEEEecCCCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVILR-RKIDNNWFYGEVNGTTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~v~-~~~~~~w~~g~~~~~~G~~P~~~v~ 129 (162)
+.+|+|++||+|.+. ++.+++||.|+.+|+.|+||.+||+
T Consensus 13 ~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~ 53 (55)
T PF07653_consen 13 PDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVE 53 (55)
T ss_dssp TTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEE
Confidence 678999999999998 6656555555554444444444443
No 31
>KOG2070|consensus
Probab=99.04 E-value=1.8e-10 Score=88.74 Aligned_cols=41 Identities=34% Similarity=0.707 Sum_probs=38.8
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
.++|+|.+||+|.|....+.|||+|+++|+.||||+|||..
T Consensus 31 nDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~e 71 (661)
T KOG2070|consen 31 NDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVRE 71 (661)
T ss_pred CceeccccCCEEEEEEeccCcceeccccCccCccchHHHHH
Confidence 88999999999999999999999999999999999999974
No 32
>KOG0320|consensus
Probab=99.02 E-value=1.2e-10 Score=78.63 Aligned_cols=50 Identities=26% Similarity=0.842 Sum_probs=41.2
Q ss_pred CCCccccccccccccCC-CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDTS-SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~-p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-+....||||++-+... |+.+.|||.||..||++.+.... .||+|++-+.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~--~CP~C~kkIt 178 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN--KCPTCRKKIT 178 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC--CCCCcccccc
Confidence 34567899999999743 46689999999999999998665 8999998554
No 33
>PHA02926 zinc finger-like protein; Provisional
Probab=98.99 E-value=2.3e-10 Score=80.05 Aligned_cols=51 Identities=24% Similarity=0.649 Sum_probs=40.1
Q ss_pred CCccccccccccccCC--------CEEcccCCccchhcHHHHHhcCC----Cccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTS--------SKVLPCQHTFCKKCLEEIVSSHK----ELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~--------p~~~~C~H~fC~~Cl~~~~~~~~----~~~Cp~Cr~~~~ 57 (162)
.++..|+||++....+ .++.+|+|+||..|+..|...+. ...||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3578999999987422 35668999999999999997531 347999999875
No 34
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.98 E-value=3.5e-10 Score=60.43 Aligned_cols=44 Identities=36% Similarity=1.024 Sum_probs=35.0
Q ss_pred ccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
.|+||.+.+.......+|||.||..|+.+|+.. +...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 489999999634444459999999999999886 33479999875
No 35
>KOG2996|consensus
Probab=98.95 E-value=3.8e-10 Score=88.63 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=31.5
Q ss_pred ceeeccCCCEEEEeEecCC-CeEEEEec--CCCCceeeeeEEe
Q psy9673 91 LDLNFKKDDIVILRRKIDN-NWFYGEVN--GTTGAFPMSYVQI 130 (162)
Q Consensus 91 ~el~~~~gd~i~v~~~~~~-~w~~g~~~--~~~G~~P~~~v~~ 130 (162)
..+.++.||++.++...+. .||.|+.. +..|+||++-|.+
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp 667 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKP 667 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCc
Confidence 4678999999988776554 79999954 4579999987775
No 36
>KOG2177|consensus
Probab=98.90 E-value=3.8e-10 Score=84.50 Aligned_cols=70 Identities=39% Similarity=0.796 Sum_probs=58.0
Q ss_pred ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccccce
Q psy9673 4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLV 80 (162)
Q Consensus 4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~~~ 80 (162)
..+.+++.|+||+++|. +|++++|+|+||..|+...+. ....||.||. .. ..+..|..+..+++.+....
T Consensus 8 ~~~~~~~~C~iC~~~~~-~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~---~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFR-EPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP-PS---RNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hhccccccChhhHHHhh-cCccccccchHhHHHHHHhcC--CCcCCcccCC-ch---hccCccHHHHHHHHHHHhcC
Confidence 44578999999999999 779999999999999999887 4468999996 33 26668888888888877654
No 37
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.85 E-value=2e-09 Score=55.53 Aligned_cols=39 Identities=44% Similarity=1.155 Sum_probs=33.1
Q ss_pred cccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccc
Q psy9673 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC 52 (162)
Q Consensus 12 C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~C 52 (162)
|+||++... .++.++|+|.||..|+..|+.. ....||.|
T Consensus 1 C~iC~~~~~-~~~~~~C~H~~c~~C~~~~~~~-~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-DPVVLPCGHTFCRSCIRKWLKS-GNNTCPIC 39 (39)
T ss_pred CCcCccCCC-CcEEecCCChHHHHHHHHHHHh-CcCCCCCC
Confidence 789999976 8899999999999999999873 33479886
No 38
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.83 E-value=2.4e-09 Score=63.55 Aligned_cols=41 Identities=29% Similarity=0.826 Sum_probs=32.7
Q ss_pred ccccccccccC------------CCEEcccCCccchhcHHHHHhcCCCccccccc
Q psy9673 11 ECSVCLDRLDT------------SSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53 (162)
Q Consensus 11 ~C~iC~~~~~~------------~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr 53 (162)
.|+||++.|.+ .....+|||.|+..||.+|+..+. .||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--cCCCCC
Confidence 49999999931 124557999999999999998666 899997
No 39
>KOG2164|consensus
Probab=98.79 E-value=2.2e-09 Score=83.27 Aligned_cols=48 Identities=25% Similarity=0.666 Sum_probs=41.4
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcC---CCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH---KELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~---~~~~Cp~Cr~~~~ 57 (162)
+..||||++... -|..+.|||.||..||..++... +...||+|+..+.
T Consensus 186 ~~~CPICL~~~~-~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPS-VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCC-cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 789999999998 67777899999999999998753 3468999999876
No 40
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.2e-09 Score=78.28 Aligned_cols=48 Identities=33% Similarity=0.785 Sum_probs=41.7
Q ss_pred CCccccccccccccC------------CCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 7 NDLLECSVCLDRLDT------------SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~------------~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
.+|..|.||++.+.- .|+.++|||.++..|++.|++.++ +||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 567889999999531 258999999999999999999877 899999985
No 41
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=98.71 E-value=2.6e-08 Score=54.41 Aligned_cols=34 Identities=35% Similarity=0.788 Sum_probs=26.9
Q ss_pred CCCceeeeeEEecCCeEEEEECCeEEeecCCCeE
Q psy9673 119 TTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQ 152 (162)
Q Consensus 119 ~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~ 152 (162)
+.|-+-...-+.+++||.|+.+|+.|+||++|||
T Consensus 16 ~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 16 KKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp -TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred cCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 3455444444569999999999999999999997
No 42
>KOG4628|consensus
Probab=98.67 E-value=1.1e-08 Score=76.85 Aligned_cols=47 Identities=26% Similarity=0.817 Sum_probs=40.4
Q ss_pred cccccccccccC--CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~--~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..|+||+|.|.. ..+.|||.|.|+..|+..|+...+ ..||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r-~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR-TFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC-ccCCCCCCcCC
Confidence 489999999953 578899999999999999999764 26999999764
No 43
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.1e-09 Score=73.73 Aligned_cols=50 Identities=32% Similarity=0.630 Sum_probs=40.8
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..+..|+||++... .|..++|||.||..||...+..++.-.||+||+-..
T Consensus 213 ~~d~kC~lC~e~~~-~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPE-VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccC-CcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 35788999999999 889999999999999998444434345999999654
No 44
>KOG3601|consensus
Probab=98.64 E-value=5.7e-09 Score=72.50 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=34.3
Q ss_pred cceeeccCCCEEEEeEecCC-CeEEEEecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~-~w~~g~~~~~~G~~P~~~v~~ 130 (162)
..||.|.+|+++.+++..++ +|+..++.|..|++|.||.+.
T Consensus 14 ~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 14 RDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred cccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 56899999998888887766 788899999999999988843
No 45
>KOG2996|consensus
Probab=98.63 E-value=2.8e-08 Score=78.40 Aligned_cols=49 Identities=35% Similarity=0.651 Sum_probs=33.7
Q ss_pred eEeeeec-----cceeeccCCCEEEEeEecCC--CeEEEEecCCCCceeeeeEEec
Q psy9673 83 FIRFFLN-----ILDLNFKKDDIVILRRKIDN--NWFYGEVNGTTGAFPMSYVQID 131 (162)
Q Consensus 83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~--~w~~g~~~~~~G~~P~~~v~~~ 131 (162)
.+.+-|+ ..+|++..||++.++++... |||.|+.+|+.||||++||+.+
T Consensus 807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence 3455566 66899999999999888653 5666666666666666666543
No 46
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.61 E-value=8.5e-08 Score=53.72 Aligned_cols=40 Identities=40% Similarity=0.819 Sum_probs=30.9
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEec-CCCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~-~~~G~~P~~~v~ 129 (162)
..++.+.+||.+.+....+.+||.++.. ++.|+||.+|++
T Consensus 16 ~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 56 (58)
T smart00326 16 PDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56 (58)
T ss_pred CCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEE
Confidence 6789999999999998877777777655 666666666654
No 47
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.61 E-value=6.6e-08 Score=52.58 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=29.4
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEec--CCCCceee
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPM 125 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~--~~~G~~P~ 125 (162)
..+|+|.+||.+.|+++.+++||.++.. ++.|+||+
T Consensus 11 ~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 11 PDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp TTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 7899999999999999999888888864 46677774
No 48
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=3.5e-08 Score=73.05 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=36.5
Q ss_pred cccccccccc--ccCCC--EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDR--LDTSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~--~~~~p--~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+-.||+|... +...- .+.+|||.||..|+.+.+.. +...||.|+.++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccc
Confidence 4679999994 44221 33379999999999998765 3358999999886
No 49
>KOG2660|consensus
Probab=98.57 E-value=1.4e-08 Score=74.95 Aligned_cols=69 Identities=26% Similarity=0.616 Sum_probs=51.7
Q ss_pred cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccccc--ccCCCcchhhhhhhhc
Q psy9673 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECK--VDELPPNVLLMRILEG 75 (162)
Q Consensus 5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~--~~~l~~n~~l~~i~e~ 75 (162)
.+.....|.+|.++|.++..+..|-|+||..||.+++.... .||.|...+-.. ...+.....++.|+-.
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~--~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK--YCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc--cCCccceeccCccccccCCcchHHHHHHHH
Confidence 34677899999999996666677999999999999998744 899999976311 3455555565555433
No 50
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.53 E-value=1.7e-07 Score=51.71 Aligned_cols=40 Identities=40% Similarity=0.767 Sum_probs=30.7
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecC-CCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNG-TTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~-~~G~~P~~~v~ 129 (162)
..++.+.+||.+.+....+++||.++..+ +.|+||.+|++
T Consensus 13 ~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 13 PDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred CCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 56889999999999988777777777554 66676666654
No 51
>KOG0311|consensus
Probab=98.49 E-value=1.2e-08 Score=75.81 Aligned_cols=53 Identities=26% Similarity=0.619 Sum_probs=42.9
Q ss_pred ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..+.-++.|+||++++...-.+..|+|.||..||...+...+ ..||.||+.+.
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn-~ecptcRk~l~ 90 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN-NECPTCRKKLV 90 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC-CCCchHHhhcc
Confidence 446678999999999984444556999999999988877644 48999999874
No 52
>KOG3632|consensus
Probab=98.49 E-value=1.1e-07 Score=78.88 Aligned_cols=66 Identities=29% Similarity=0.637 Sum_probs=59.8
Q ss_pred cceeeccCCCEEEEeEecC-CCeEEEEecCCCCceeeeeEEe--------------------------------------
Q psy9673 90 ILDLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYVQI-------------------------------------- 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~-~~w~~g~~~~~~G~~P~~~v~~-------------------------------------- 130 (162)
..+|.|+.|++|.|....| ++++.|+.+|+.|.||.|+|..
T Consensus 1160 EeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~lPsv~~~e~~~gs~~s~g~~k~ 1239 (1335)
T KOG3632|consen 1160 EEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGLLPSVPTEEMRKGSAFSDGQQKM 1239 (1335)
T ss_pred hhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhccCCCCCchhhhcccccCCCCccc
Confidence 6789999999998876655 5899999999999999999986
Q ss_pred --------------------------------------------cCCeEEEEECCeEEeecCCCeEecc
Q psy9673 131 --------------------------------------------DNNWFYGEVNGTTGAFPMSYVQFVW 155 (162)
Q Consensus 131 --------------------------------------------~~~w~~g~~~g~~g~~p~~~~~~~~ 155 (162)
+++.+.|+++|+.|++|++|++...
T Consensus 1240 vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1240 VPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAPN 1308 (1335)
T ss_pred cCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCCC
Confidence 8899999999999999999999874
No 53
>KOG4159|consensus
Probab=98.47 E-value=6.7e-08 Score=74.33 Aligned_cols=51 Identities=33% Similarity=0.762 Sum_probs=43.9
Q ss_pred ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..+..++.|.||...+. +|++++|||+||..||.+.+... ..||.||..+.
T Consensus 79 ~~~~sef~c~vc~~~l~-~pv~tpcghs~c~~Cl~r~ld~~--~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALY-PPVVTPCGHSFCLECLDRSLDQE--TECPLCRDELV 129 (398)
T ss_pred ccccchhhhhhhHhhcC-CCccccccccccHHHHHHHhccC--CCCcccccccc
Confidence 34467899999999999 88999999999999999977643 48999999875
No 54
>KOG0802|consensus
Probab=98.46 E-value=5.3e-08 Score=78.54 Aligned_cols=47 Identities=34% Similarity=0.849 Sum_probs=41.8
Q ss_pred CccccccccccccCC----CEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 8 DLLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~----p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
.+..|+||.+.+... +..++|+|.||..|+.+|++..+ +||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q--tCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ--TCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC--cCCcchhhh
Confidence 477899999999843 89999999999999999999866 899999954
No 55
>KOG0978|consensus
Probab=98.45 E-value=2.4e-08 Score=80.92 Aligned_cols=56 Identities=27% Similarity=0.791 Sum_probs=45.6
Q ss_pred cCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCC
Q psy9673 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64 (162)
Q Consensus 5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~ 64 (162)
.++..|.|++|..-.. +.+++.|+|.||..|+...+...+ ..||.|.+.|. +.++.
T Consensus 639 ~yK~~LkCs~Cn~R~K-d~vI~kC~H~FC~~Cvq~r~etRq-RKCP~Cn~aFg--anDv~ 694 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWK-DAVITKCGHVFCEECVQTRYETRQ-RKCPKCNAAFG--ANDVH 694 (698)
T ss_pred HHHhceeCCCccCchh-hHHHHhcchHHHHHHHHHHHHHhc-CCCCCCCCCCC--ccccc
Confidence 4567899999998888 778899999999999998776533 37999999997 44443
No 56
>KOG0162|consensus
Probab=98.44 E-value=1.1e-07 Score=76.81 Aligned_cols=48 Identities=33% Similarity=0.703 Sum_probs=43.4
Q ss_pred eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673 82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129 (162)
Q Consensus 82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~ 129 (162)
+.++++|+ .++|+|..|++|.+..++.++||.|.++|++||||.+||.
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~ 1104 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVT 1104 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccc
Confidence 56788888 7899999999999999999999999999999999999885
No 57
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.2e-07 Score=68.00 Aligned_cols=47 Identities=30% Similarity=0.842 Sum_probs=39.0
Q ss_pred ccccccccccc--CCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~--~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.+|+||++.|. ++-+++||.|.|+..|+..|+...+ ..||+||.+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~-~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-NKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc-ccCCccCCCCC
Confidence 57999999994 2578899999999999999998422 26999998765
No 58
>KOG2856|consensus
Probab=98.23 E-value=2.2e-07 Score=69.63 Aligned_cols=47 Identities=28% Similarity=0.528 Sum_probs=31.8
Q ss_pred eeEeeeec-----cceeeccCCCEEEEeEecCC-CeEEEEec-CCCCceeeeeE
Q psy9673 82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDN-NWFYGEVN-GTTGAFPMSYV 128 (162)
Q Consensus 82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~-~w~~g~~~-~~~G~~P~~~v 128 (162)
..++++|+ .++|+|+.||.+..+...|+ +|..|+++ |+.|++|+|||
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYV 468 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYV 468 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhh
Confidence 56788998 88999999999977766665 55555544 44444444444
No 59
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.22 E-value=1.1e-06 Score=52.89 Aligned_cols=50 Identities=24% Similarity=0.512 Sum_probs=38.1
Q ss_pred CccccccccccccC-----------CC-EEcccCCccchhcHHHHHhcC-CCccccccccccc
Q psy9673 8 DLLECSVCLDRLDT-----------SS-KVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~-----------~p-~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~ 57 (162)
++-.|.||...|.. -| +.-.|+|.|+..||.+|++++ +...||+||++.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 46678888888852 13 333699999999999999864 2359999999765
No 60
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=98.22 E-value=2.7e-06 Score=47.55 Aligned_cols=36 Identities=36% Similarity=0.652 Sum_probs=27.5
Q ss_pred CCCceeeee-EEecCCeEEEEECCeEEeecCCCeEec
Q psy9673 119 TTGAFPMSY-VQIDNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 119 ~~G~~P~~~-v~~~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
+.|-+-.-+ -+.+++||.|+.+|+.|+||++||+++
T Consensus 19 ~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 19 KKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp -TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred ecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 345444444 345789999999999999999999973
No 61
>KOG2879|consensus
Probab=98.21 E-value=9.4e-07 Score=63.86 Aligned_cols=51 Identities=27% Similarity=0.561 Sum_probs=41.5
Q ss_pred CCCccccccccccccCCCEEc-ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDTSSKVL-PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p~~~-~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
...+.+|++|.+.-. -|.+. +|||.||+.|+........++.||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~Pt-iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPT-IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCC-CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 456778999998887 55554 5999999999998887666789999988654
No 62
>KOG0824|consensus
Probab=98.21 E-value=5.3e-07 Score=65.95 Aligned_cols=47 Identities=26% Similarity=0.651 Sum_probs=40.0
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.-+|+||+..-. .|+.+.|+|.||+.||+...... ...|++||.++.
T Consensus 7 ~~eC~IC~nt~n-~Pv~l~C~HkFCyiCiKGsy~nd-k~~CavCR~pid 53 (324)
T KOG0824|consen 7 KKECLICYNTGN-CPVNLYCFHKFCYICIKGSYKND-KKTCAVCRFPID 53 (324)
T ss_pred CCcceeeeccCC-cCccccccchhhhhhhcchhhcC-CCCCceecCCCC
Confidence 457999999998 88999999999999999766543 247999999986
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.21 E-value=3.4e-07 Score=63.07 Aligned_cols=46 Identities=24% Similarity=0.571 Sum_probs=40.0
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.+.|.||...|. .|+++.|||.||..|..+-++... .|-+|.+...
T Consensus 196 PF~C~iCKkdy~-spvvt~CGH~FC~~Cai~~y~kg~--~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYE-SPVVTECGHSFCSLCAIRKYQKGD--ECGVCGKATY 241 (259)
T ss_pred ceeehhchhhcc-chhhhhcchhHHHHHHHHHhccCC--cceecchhhc
Confidence 467999999999 899999999999999988777544 8999988654
No 64
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.15 E-value=8.4e-07 Score=49.84 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=30.6
Q ss_pred CCccccccccccccCCCEE-cccCCccchhcHHHHHhcCCCccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPE 51 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~-~~C~H~fC~~Cl~~~~~~~~~~~Cp~ 51 (162)
...+.|||.+..|. +|+. ..|+|+|-...|..+++..+...||+
T Consensus 9 ~~~~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45688999999999 5555 58999999999999996666779998
No 65
>KOG1039|consensus
Probab=98.08 E-value=9.9e-07 Score=66.72 Aligned_cols=50 Identities=26% Similarity=0.765 Sum_probs=39.7
Q ss_pred CccccccccccccCCC-------EEcccCCccchhcHHHHHhcCC-----Cccccccccccc
Q psy9673 8 DLLECSVCLDRLDTSS-------KVLPCQHTFCKKCLEEIVSSHK-----ELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p-------~~~~C~H~fC~~Cl~~~~~~~~-----~~~Cp~Cr~~~~ 57 (162)
.+..|.||++.....+ ++.+|.|+||..|+..|....+ +..||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4778999999997333 2256999999999999986544 479999999764
No 66
>KOG2070|consensus
Probab=98.00 E-value=3.3e-06 Score=65.77 Aligned_cols=36 Identities=31% Similarity=0.601 Sum_probs=28.8
Q ss_pred CCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673 119 TTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 119 ~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
..|.+-..--..+++||+|-++|+.|+||+|||..+
T Consensus 37 ~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~ei 72 (661)
T KOG2070|consen 37 SKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREI 72 (661)
T ss_pred ccCCEEEEEEeccCcceeccccCccCccchHHHHHH
Confidence 345555444446999999999999999999999876
No 67
>KOG1843|consensus
Probab=97.95 E-value=4.3e-06 Score=63.63 Aligned_cols=46 Identities=37% Similarity=0.714 Sum_probs=30.3
Q ss_pred eEeeeec-----cceeeccCCCEEEEeEecCC--CeEEEEecCCCCceeeeeE
Q psy9673 83 FIRFFLN-----ILDLNFKKDDIVILRRKIDN--NWFYGEVNGTTGAFPMSYV 128 (162)
Q Consensus 83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~--~w~~g~~~~~~G~~P~~~v 128 (162)
.+.++|+ ..++.|++||+|.++++.+. +||.|+.++.+|+||+|||
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv 470 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYV 470 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhcccccccccccee
Confidence 5566666 77899999999999888765 3444444444444444444
No 68
>KOG0515|consensus
Probab=97.90 E-value=5.2e-06 Score=65.32 Aligned_cols=44 Identities=25% Similarity=0.647 Sum_probs=33.8
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQF 153 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~ 153 (162)
.++|+|..||.++|+++.+. .+.+||+.+++|+.|++|-||+-+
T Consensus 697 ~DELsf~eGd~lTvirr~d~--------------------~eteWWwa~lng~eGyVPRnylgL 740 (752)
T KOG0515|consen 697 EDELSFDEGDELTVIRRDDE--------------------VETEWWWARLNGEEGYVPRNYLGL 740 (752)
T ss_pred cccccccCCceeEEEecCCc--------------------chhhhhhHhhcCcccccchhhhhc
Confidence 88999999999999999764 355677777777777777776643
No 69
>KOG1264|consensus
Probab=97.90 E-value=3.6e-06 Score=69.16 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=42.8
Q ss_pred eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCC-CCceeeeeEEe
Q psy9673 82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGT-TGAFPMSYVQI 130 (162)
Q Consensus 82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~-~G~~P~~~v~~ 130 (162)
-.++++|+ .++|+|.++-+|+...+.+.+||.|.++|+ .+|||+|||+.
T Consensus 775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVee 829 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEE 829 (1267)
T ss_pred hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhh
Confidence 34677887 889999999999999999989999999875 69999999986
No 70
>KOG1813|consensus
Probab=97.88 E-value=4.6e-06 Score=60.95 Aligned_cols=45 Identities=22% Similarity=0.576 Sum_probs=38.8
Q ss_pred cccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+-|-||.+.|. .|+++.|+|.||..|-...++... .|.+|.+.+.
T Consensus 242 f~c~icr~~f~-~pVvt~c~h~fc~~ca~~~~qk~~--~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFY-RPVVTKCGHYFCEVCALKPYQKGE--KCYVCSQQTH 286 (313)
T ss_pred ccccccccccc-cchhhcCCceeehhhhccccccCC--cceecccccc
Confidence 46999999999 889999999999999887776443 7999988664
No 71
>KOG1734|consensus
Probab=97.85 E-value=3.3e-06 Score=60.98 Aligned_cols=59 Identities=27% Similarity=0.555 Sum_probs=44.7
Q ss_pred CccccccccccccCC---------CEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchh
Q psy9673 8 DLLECSVCLDRLDTS---------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~---------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~ 68 (162)
++.-|+||..-+... .-.++|+|+|+..||+.|-.-++..+||.|+..+. .+.++.|..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd--l~rmfsnpW 290 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD--LKRMFSNPW 290 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh--HhhhccCcc
Confidence 456699999888522 35789999999999999976555559999999775 445555543
No 72
>KOG0804|consensus
Probab=97.82 E-value=6.5e-06 Score=63.38 Aligned_cols=48 Identities=40% Similarity=0.854 Sum_probs=39.4
Q ss_pred CCCccccccccccccCCC---EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p---~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+.+.-.||||++.+.... .++.|.|+|+-.|+..|... +||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC----cChhhhhhcC
Confidence 456779999999997443 66779999999999998873 7999998654
No 73
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.81 E-value=7e-06 Score=48.18 Aligned_cols=49 Identities=29% Similarity=0.576 Sum_probs=23.5
Q ss_pred cccccccccccc-CC--CEEc----ccCCccchhcHHHHHhcC----CC-----ccccccccccc
Q psy9673 9 LLECSVCLDRLD-TS--SKVL----PCQHTFCKKCLEEIVSSH----KE-----LRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~-~~--p~~~----~C~H~fC~~Cl~~~~~~~----~~-----~~Cp~Cr~~~~ 57 (162)
++.|+||..++. +. |.+. .|+..|+..||.+|+... .. ..||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999999865 21 2222 599999999999998731 11 26999999876
No 74
>KOG2546|consensus
Probab=97.81 E-value=3.1e-06 Score=64.67 Aligned_cols=25 Identities=40% Similarity=0.842 Sum_probs=23.6
Q ss_pred cCCeEEEEECCeEEeecCCCeEecc
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQFVW 155 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~~~ 155 (162)
|++||||..+|..|+||.|||+++-
T Consensus 455 ddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 455 DDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred CCcchhheecCcceeccCccccccc
Confidence 8999999999999999999999863
No 75
>KOG0297|consensus
Probab=97.80 E-value=1.3e-05 Score=62.21 Aligned_cols=50 Identities=36% Similarity=0.859 Sum_probs=42.9
Q ss_pred cCCCccccccccccccCCCEE-cccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 5 TLNDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 5 ~~~~~l~C~iC~~~~~~~p~~-~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.+++++.|++|..++. +|.. +.|||.||..|+..++..++ .||.|+....
T Consensus 17 ~~~~~l~C~~C~~vl~-~p~~~~~cgh~fC~~C~~~~~~~~~--~cp~~~~~~~ 67 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLR-DPVQTTTCGHRFCAGCLLESLSNHQ--KCPVCRQELT 67 (391)
T ss_pred CCcccccCcccccccc-CCCCCCCCCCcccccccchhhccCc--CCcccccccc
Confidence 3577899999999999 6666 59999999999999998744 8999988764
No 76
>KOG2546|consensus
Probab=97.77 E-value=8.3e-06 Score=62.41 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=42.4
Q ss_pred eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
+..++|+ .++++|.++-+|-++++.|++||+|-.+|-.|+||-|||+.
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~ 477 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEP 477 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccc
Confidence 3445665 77999999999999999999999999999999999999974
No 77
>KOG4172|consensus
Probab=97.66 E-value=7.2e-06 Score=44.61 Aligned_cols=47 Identities=26% Similarity=0.612 Sum_probs=37.2
Q ss_pred ccccccccccccCCCEEcccCC-ccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+.+|.||.+--. +.++.-||| -.|..|-.+.+... ...||+||++++
T Consensus 7 ~dECTICye~pv-dsVlYtCGHMCmCy~Cg~rl~~~~-~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV-DSVLYTCGHMCMCYACGLRLKKAL-HGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc-hHHHHHcchHHhHHHHHHHHHHcc-CCcCcchhhHHH
Confidence 368999999887 667888999 46889988777632 238999999876
No 78
>KOG3601|consensus
Probab=97.65 E-value=1.4e-05 Score=55.85 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=30.5
Q ss_pred Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673 84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128 (162)
Q Consensus 84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v 128 (162)
.+++|+ +.++.|.+|+.+.++++.+..||.|...|+.|+||++||
T Consensus 166 qQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv 215 (222)
T KOG3601|consen 166 QQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYV 215 (222)
T ss_pred hhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccc
Confidence 445555 778889999999998886665555555555555555544
No 79
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.64 E-value=4.2e-05 Score=41.59 Aligned_cols=43 Identities=26% Similarity=0.668 Sum_probs=33.6
Q ss_pred ccccccccc-cCCCEEcccC-----CccchhcHHHHHhcCCCccccccc
Q psy9673 11 ECSVCLDRL-DTSSKVLPCQ-----HTFCKKCLEEIVSSHKELRCPECR 53 (162)
Q Consensus 11 ~C~iC~~~~-~~~p~~~~C~-----H~fC~~Cl~~~~~~~~~~~Cp~Cr 53 (162)
.|-||++.. .+.+.+.||. |.++..|+.+|+..++...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 378998722 2257888986 679999999999877667899984
No 80
>KOG1702|consensus
Probab=97.63 E-value=7.3e-05 Score=52.09 Aligned_cols=46 Identities=33% Similarity=0.736 Sum_probs=35.7
Q ss_pred Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEe--cCCCCceeeeeEE
Q psy9673 84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129 (162)
Q Consensus 84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~ 129 (162)
-+++|+ .++++|..||.|.....++++|-+|+. .|..|..|+||++
T Consensus 210 yra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie 262 (264)
T KOG1702|consen 210 YRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIE 262 (264)
T ss_pred chhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhhee
Confidence 345665 678999999999888888999999884 5566777777765
No 81
>KOG3655|consensus
Probab=97.61 E-value=1.8e-05 Score=61.39 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=36.3
Q ss_pred eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673 82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
..+.++|+ ..+++|..++.|.+++..+++||.|.. | .|.+|+||+|||+++
T Consensus 428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~-------p---------------dG~~glfPaNyV~li 483 (484)
T KOG3655|consen 428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQG-------P---------------DGEVGLFPANYVELI 483 (484)
T ss_pred CCccccccccccCCcccccCCccccccccccCCccccccC-------C---------------CCCcCcccccccccC
Confidence 34566666 567888899999888888888877764 1 356667777777654
No 82
>KOG3523|consensus
Probab=97.55 E-value=1.1e-05 Score=64.22 Aligned_cols=41 Identities=34% Similarity=0.604 Sum_probs=37.4
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~~ 130 (162)
++++.++.+|++.|+.+.++||++|+ .+|..||||.+|++.
T Consensus 622 ~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~vee 664 (695)
T KOG3523|consen 622 PDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEE 664 (695)
T ss_pred CceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHH
Confidence 88999999999999999999999998 478899999988864
No 83
>KOG4792|consensus
Probab=97.55 E-value=0.00011 Score=52.09 Aligned_cols=44 Identities=32% Similarity=0.485 Sum_probs=40.1
Q ss_pred eeccceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 87 FLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 87 ~~~~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
.||...|.++.||++.|.++.-++-|+|+++|+.|.||..||+.
T Consensus 240 AYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf 283 (293)
T KOG4792|consen 240 AYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRF 283 (293)
T ss_pred ccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEe
Confidence 34577889999999999999999999999999999999999975
No 84
>KOG1002|consensus
Probab=97.53 E-value=2.4e-05 Score=61.67 Aligned_cols=50 Identities=30% Similarity=0.810 Sum_probs=42.2
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhc---CCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS---HKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~---~~~~~Cp~Cr~~~~ 57 (162)
.....|.+|.+.-. +++..+|.|.||..|+.+++.. ....+||+|-..++
T Consensus 534 k~~~~C~lc~d~ae-d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAE-DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhh-hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 45678999999998 8899999999999999988763 23379999988765
No 85
>KOG4185|consensus
Probab=97.50 E-value=4.9e-05 Score=57.04 Aligned_cols=67 Identities=30% Similarity=0.732 Sum_probs=53.7
Q ss_pred ccccccccccccC-----CCEEcccCCccchhcHHHHHhcCCCccccccccccc---ccccCCCcchhhhhhhhcc
Q psy9673 9 LLECSVCLDRLDT-----SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE---CKVDELPPNVLLMRILEGL 76 (162)
Q Consensus 9 ~l~C~iC~~~~~~-----~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~---~~~~~l~~n~~l~~i~e~~ 76 (162)
.+.|-||.+.|+. .|+++.|||+||..|+...+.+ ....||.||.+.. .....+..|+.+..++...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 5679999999963 3899999999999999987775 4467899999842 4466778888888877765
No 86
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=97.48 E-value=0.0001 Score=40.86 Aligned_cols=24 Identities=38% Similarity=0.977 Sum_probs=22.1
Q ss_pred cCCeEEEEEC-CeEEeecCCCeEec
Q psy9673 131 DNNWFYGEVN-GTTGAFPMSYVQFV 154 (162)
Q Consensus 131 ~~~w~~g~~~-g~~g~~p~~~~~~~ 154 (162)
+++||.++.. |+.|+||++|++.+
T Consensus 34 ~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 34 DDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred CCCeEEEEeCCCCEEEEchHHEEEC
Confidence 7899999998 99999999999864
No 87
>KOG4265|consensus
Probab=97.47 E-value=6e-05 Score=56.71 Aligned_cols=46 Identities=35% Similarity=0.855 Sum_probs=37.7
Q ss_pred ccccccccccccCCCEEcccCC-ccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
--+|-||+.... +..++||.| -.|..|.+...-.++ .||+||.++.
T Consensus 290 gkeCVIClse~r-dt~vLPCRHLCLCs~Ca~~Lr~q~n--~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESR-DTVVLPCRHLCLCSGCAKSLRYQTN--NCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCc-ceEEecchhhehhHhHHHHHHHhhc--CCCccccchH
Confidence 468999999999 889999999 459999876553333 7999999875
No 88
>KOG4367|consensus
Probab=97.47 E-value=5.8e-05 Score=58.24 Aligned_cols=37 Identities=30% Similarity=0.818 Sum_probs=32.6
Q ss_pred CCCccccccccccccCCCEEcccCCccchhcHHHHHhc
Q psy9673 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS 43 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~ 43 (162)
++++|.|+||..+|. +|++++|+|..|..|....+.+
T Consensus 1 meeelkc~vc~~f~~-epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYR-EPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred CcccccCceehhhcc-CceEeecccHHHHHHHHhhccc
Confidence 367999999999999 9999999999999998866553
No 89
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.47 E-value=4.5e-05 Score=56.08 Aligned_cols=44 Identities=32% Similarity=0.853 Sum_probs=35.8
Q ss_pred cccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccc
Q psy9673 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
|.|++|..++.++-.+-.|+|.||..||...+... .+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds-Df~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS-DFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc-cccCCCccc
Confidence 88999999999444444799999999999777643 368999976
No 90
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.45 E-value=3.1e-05 Score=64.80 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=39.5
Q ss_pred CCccccccccccccCC------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTS------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
...-+|+||..++.-- .+-..|.|.|+.+|+..|..+.+.-.||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4456899999998511 12224999999999999999877779999997653
No 91
>KOG1785|consensus
Probab=97.44 E-value=4.7e-05 Score=58.08 Aligned_cols=46 Identities=30% Similarity=0.782 Sum_probs=39.4
Q ss_pred ccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.|.||-+-=+ +..+-+|||..|..|+..|..+...-.||.||..++
T Consensus 371 LCKICaendK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 5899998877 778889999999999999986543458999999875
No 92
>KOG3875|consensus
Probab=97.43 E-value=3.2e-05 Score=57.09 Aligned_cols=57 Identities=28% Similarity=0.522 Sum_probs=37.0
Q ss_pred eeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673 82 SFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFV 154 (162)
Q Consensus 82 ~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~ 154 (162)
..++++|+ +.|++|+.||++.|..+.+.. | ++.+||..+. +|.+|++|.|||+.+
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~----------~--------~~~~gW~lat~dg~~tG~iP~NYvkIi 330 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQ----------G--------VRCEGWLLATRDGGTTGLIPINYVKII 330 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccC----------C--------CCCcceeeeeccCCeeeeeehhhhhhh
Confidence 34677777 889999999999998886641 0 1233444444 466666666666655
Q ss_pred cC
Q psy9673 155 WY 156 (162)
Q Consensus 155 ~~ 156 (162)
.-
T Consensus 331 ~r 332 (362)
T KOG3875|consen 331 GR 332 (362)
T ss_pred hc
Confidence 43
No 93
>KOG1451|consensus
Probab=97.29 E-value=0.00019 Score=57.38 Aligned_cols=40 Identities=30% Similarity=0.669 Sum_probs=24.9
Q ss_pred cceeeccCCCEEE-EeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVI-LRRKIDNNWFYGEVNGTTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~-v~~~~~~~w~~g~~~~~~G~~P~~~v~ 129 (162)
+.++.|..|.++. +.....+||..|+++|+.|++|+|||+
T Consensus 770 ~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve 810 (812)
T KOG1451|consen 770 HSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVE 810 (812)
T ss_pred cccccccCcceeeeecccCCCCceeeecCCCcccCcccccC
Confidence 5567777777663 333445566666666666666666664
No 94
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.26 E-value=0.00012 Score=43.07 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=26.4
Q ss_pred ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 27 PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-|.|.|+..||.+|+..++ .||+++++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~--~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKG--VCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCC--CCCCCCceeE
Confidence 4999999999999999877 8999999875
No 95
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=97.23 E-value=0.0003 Score=38.36 Aligned_cols=24 Identities=38% Similarity=0.852 Sum_probs=21.1
Q ss_pred ecCCeEEEEECC-eEEeecCCCeEe
Q psy9673 130 IDNNWFYGEVNG-TTGAFPMSYVQF 153 (162)
Q Consensus 130 ~~~~w~~g~~~g-~~g~~p~~~~~~ 153 (162)
.+++||.++..+ +.|+||.+||++
T Consensus 30 ~~~~w~~~~~~~~~~G~vP~~~v~~ 54 (54)
T cd00174 30 SDDGWWEGRLLGGKRGLFPSNYVEE 54 (54)
T ss_pred CCCCeEEEEECCCCEEEEccccCcC
Confidence 378999999976 999999999873
No 96
>KOG2222|consensus
Probab=97.16 E-value=7.3e-05 Score=58.53 Aligned_cols=48 Identities=29% Similarity=0.576 Sum_probs=41.7
Q ss_pred eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
+++++.+ ..++.|.++|+|++.+.-|+.-|.|+++|-+||||+-||++
T Consensus 550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvel 602 (848)
T KOG2222|consen 550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVEL 602 (848)
T ss_pred HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHH
Confidence 3445554 67899999999999999999999999999999999999986
No 97
>KOG1941|consensus
Probab=97.14 E-value=0.00013 Score=55.53 Aligned_cols=48 Identities=35% Similarity=0.845 Sum_probs=39.3
Q ss_pred CccccccccccccCC---CEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673 8 DLLECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
-.|.|..|.+.+--. ---+||.|+|+.+|+.+++.+...-+||-||+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 467899999998422 234689999999999999988777899999953
No 98
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.14 E-value=0.00023 Score=39.07 Aligned_cols=45 Identities=29% Similarity=0.581 Sum_probs=33.8
Q ss_pred CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
....|-.|...-. ..++++|||..|..|....--+ .||.|.+++.
T Consensus 6 ~~~~~~~~~~~~~-~~~~~pCgH~I~~~~f~~~rYn----gCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGT-KGTVLPCGHLICDNCFPGERYN----GCPFCGTPFE 50 (55)
T ss_pred cceeEEEcccccc-ccccccccceeeccccChhhcc----CCCCCCCccc
Confidence 3445666665555 6788999999999998754442 6999999886
No 99
>KOG3655|consensus
Probab=97.13 E-value=0.00012 Score=56.95 Aligned_cols=16 Identities=31% Similarity=0.918 Sum_probs=9.9
Q ss_pred ecCCeEEEEECCeEEeec
Q psy9673 130 IDNNWFYGEVNGTTGAFP 147 (162)
Q Consensus 130 ~~~~w~~g~~~g~~g~~p 147 (162)
+|++||.| -|..|-++
T Consensus 458 vdegww~g--~~pdG~~g 473 (484)
T KOG3655|consen 458 VDEGWWTG--QGPDGEVG 473 (484)
T ss_pred cCCccccc--cCCCCCcC
Confidence 38899975 45555433
No 100
>KOG3002|consensus
Probab=97.06 E-value=0.00035 Score=52.28 Aligned_cols=61 Identities=25% Similarity=0.595 Sum_probs=45.6
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccccccccCCCcchhhhhhhhccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLF 77 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~ 77 (162)
-+.|.||||.+.+..+.....=||.-|..|-.+... .||.||.++. . ..++.++++++...
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~-----~CP~Cr~~~g----~-~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSN-----KCPTCRLPIG----N-IRCRAMEKVAEAVL 106 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhhcc-----cCCccccccc----c-HHHHHHHHHHHhce
Confidence 467899999999995556666789999999865333 7999999886 2 25666777766554
No 101
>KOG3725|consensus
Probab=96.98 E-value=6.3e-05 Score=54.28 Aligned_cols=53 Identities=21% Similarity=0.528 Sum_probs=36.1
Q ss_pred eeeEeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673 81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
..+++.+|+ +.++++-.+++|.|..-.. .|.+|..|+-+|+.|.+|.+|+|++
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpG---------------------MD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPG---------------------MDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCC---------------------CChHHhhhhhcCCCCCcchhHHHhc
Confidence 345677777 7778888888887765422 2556777777777777777777754
No 102
>KOG0828|consensus
Probab=96.94 E-value=0.00027 Score=55.40 Aligned_cols=51 Identities=29% Similarity=0.770 Sum_probs=38.2
Q ss_pred CCCccccccccccccC-----C-----------CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDT-----S-----------SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~-----~-----------p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.+....|+||+..+.- + =+++||.|.|+..|+.+|+...+ ..||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 3455679999977631 1 23459999999999999998432 47999998765
No 103
>KOG1493|consensus
Probab=96.91 E-value=0.00021 Score=41.72 Aligned_cols=47 Identities=26% Similarity=0.638 Sum_probs=34.0
Q ss_pred cccccccccc-----------CCCEEc-ccCCccchhcHHHHHhcC-CCccccccccccc
Q psy9673 11 ECSVCLDRLD-----------TSSKVL-PCQHTFCKKCLEEIVSSH-KELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~-----------~~p~~~-~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~~ 57 (162)
.|.||.--|. +-|.+. -|.|.|+..||.+|+... +...||+||+..+
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 5667666553 224444 399999999999999753 2358999999764
No 104
>KOG0827|consensus
Probab=96.89 E-value=0.00046 Score=52.58 Aligned_cols=45 Identities=27% Similarity=0.730 Sum_probs=32.6
Q ss_pred cccccccccccCC---CEEcccCCccchhcHHHHHhcCCC-cccccccc
Q psy9673 10 LECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKE-LRCPECRV 54 (162)
Q Consensus 10 l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~-~~Cp~Cr~ 54 (162)
..|.||.+.+... ..+-.|||+|+..|+..|+.-..+ ..||.|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 3699996655421 122239999999999999985444 48999994
No 105
>KOG1118|consensus
Probab=96.82 E-value=0.00047 Score=51.04 Aligned_cols=18 Identities=44% Similarity=0.999 Sum_probs=15.2
Q ss_pred EEEecCCCCceeeeeEEe
Q psy9673 113 YGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 113 ~g~~~~~~G~~P~~~v~~ 130 (162)
.|+..|.+|+||.|||++
T Consensus 343 eG~~~g~sG~FPvnYv~v 360 (366)
T KOG1118|consen 343 EGEKHGESGMFPVNYVEV 360 (366)
T ss_pred hheecCccCccccceeEE
Confidence 467778899999999975
No 106
>KOG1264|consensus
Probab=96.79 E-value=0.00059 Score=56.71 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=27.8
Q ss_pred CceeeeeEEecCCeEEEEECCe-EEeecCCCeEeccC
Q psy9673 121 GAFPMSYVQIDNNWFYGEVNGT-TGAFPMSYVQFVWY 156 (162)
Q Consensus 121 G~~P~~~v~~~~~w~~g~~~g~-~g~~p~~~~~~~~~ 156 (162)
|.+-.|-.+..++||.|.+||+ +++||+||||.+..
T Consensus 796 ~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 796 GAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred cceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 3444445555778999999965 89999999999865
No 107
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.75 E-value=0.00078 Score=36.14 Aligned_cols=44 Identities=30% Similarity=0.807 Sum_probs=21.0
Q ss_pred cccccccccC-CCEEc--ccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 12 CSVCLDRLDT-SSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 12 C~iC~~~~~~-~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
|++|.+.+.. +.... +||+.+|..|..+.+... ...||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~-~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE-GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS--SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc-CCCCCCCCCCC
Confidence 6888888832 22223 588899999999988632 23899999864
No 108
>KOG2930|consensus
Probab=96.70 E-value=0.00071 Score=41.93 Aligned_cols=27 Identities=22% Similarity=0.554 Sum_probs=24.3
Q ss_pred ccCCccchhcHHHHHhcCCCccccccccc
Q psy9673 27 PCQHTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
.|.|.|+.-||.+|+..++ .||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~--vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN--VCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcC--cCCCcCcc
Confidence 4999999999999999877 89999774
No 109
>KOG0825|consensus
Probab=96.70 E-value=0.00031 Score=57.96 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=36.3
Q ss_pred ccccccccccccCCC--EEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p--~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.-.|++|+..+.+.- .-..|+|.||..|+..|-...+ +||+||..|.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 446888887775332 2246999999999999988666 8999999874
No 110
>KOG2856|consensus
Probab=96.64 E-value=0.00042 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.948 Sum_probs=20.7
Q ss_pred CeEEEEEC-CeEEeecCCCeEec
Q psy9673 133 NWFYGEVN-GTTGAFPMSYVQFV 154 (162)
Q Consensus 133 ~w~~g~~~-g~~g~~p~~~~~~~ 154 (162)
+|..||++ |++|+||+||||-+
T Consensus 449 GWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 449 GWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred ccccccccCCcccccchhhhhcc
Confidence 99999998 99999999999864
No 111
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=96.63 E-value=0.0043 Score=33.31 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=17.9
Q ss_pred eEEecCCeEEEEEC--CeEEeecC
Q psy9673 127 YVQIDNNWFYGEVN--GTTGAFPM 148 (162)
Q Consensus 127 ~v~~~~~w~~g~~~--g~~g~~p~ 148 (162)
.-..+++||.|+.. |+.|+||+
T Consensus 25 ~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 25 LEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEG
T ss_pred EEecCCCEEEEEECCCCcEEEeeC
Confidence 33347799999995 79999996
No 112
>KOG4692|consensus
Probab=96.63 E-value=0.0011 Score=50.15 Aligned_cols=48 Identities=25% Similarity=0.568 Sum_probs=39.4
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.++..|+||.---. ..+..||+|.-|+.||.+.+-+.+ .|-.|+.++.
T Consensus 420 sEd~lCpICyA~pi-~Avf~PC~H~SC~~CI~qHlmN~k--~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI-NAVFAPCSHRSCYGCITQHLMNCK--RCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccc-hhhccCCCCchHHHHHHHHHhcCC--eeeEecceee
Confidence 35677999987666 568889999999999999887544 8999988775
No 113
>KOG1645|consensus
Probab=96.61 E-value=0.00074 Score=51.81 Aligned_cols=48 Identities=29% Similarity=0.708 Sum_probs=37.9
Q ss_pred ccccccccccccCC----CEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 9 LLECSVCLDRLDTS----SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 9 ~l~C~iC~~~~~~~----p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
-..||||++.+..+ -+.+.|||.|-..|+++|+.......||.|....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 35799999998532 3556799999999999999744456899998754
No 114
>KOG4575|consensus
Probab=96.60 E-value=0.0029 Score=51.27 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=37.2
Q ss_pred Eeeeec-----cceeeccCCCEEEEeEecCCCeEEEEecCC--CCceeeeeEEe
Q psy9673 84 IRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQI 130 (162)
Q Consensus 84 ~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~~~~~--~G~~P~~~v~~ 130 (162)
.+++|. .+++.|..||+|.++...+..||.+...++ .|+||+|||..
T Consensus 11 vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhc 64 (874)
T KOG4575|consen 11 VRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHC 64 (874)
T ss_pred EEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceee
Confidence 566676 778999999999999987777777775543 69999999953
No 115
>KOG3039|consensus
Probab=96.60 E-value=0.0014 Score=47.16 Aligned_cols=48 Identities=21% Similarity=0.419 Sum_probs=39.3
Q ss_pred CccccccccccccCC---CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 8 DLLECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.-..||+|.+.|.+. .++.+|||.||+.|+.+.+... ..||+|..+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D--~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD--MVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc--ccccCCCCcCc
Confidence 345699999999753 5666899999999999987743 48999999886
No 116
>KOG4275|consensus
Probab=96.34 E-value=0.00071 Score=49.73 Aligned_cols=42 Identities=31% Similarity=0.770 Sum_probs=34.4
Q ss_pred ccccccccccccCCCEEcccCCc-cchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~-fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
...|.||++.-. +-+.++|||. -|..|-.++- .||+||+.+.
T Consensus 300 ~~LC~ICmDaP~-DCvfLeCGHmVtCt~CGkrm~------eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR-DCVFLECGHMVTCTKCGKRMN------ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc-ceEEeecCcEEeehhhccccc------cCchHHHHHH
Confidence 567999999998 7799999994 5889976633 5999999764
No 117
>KOG0826|consensus
Probab=96.31 E-value=0.0024 Score=47.76 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=38.5
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.-.||||+....++.+..--|-.||+.|+-.++.+.+ .||+-..+..
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~--~CPVT~~p~~ 346 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG--HCPVTGYPAS 346 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC--CCCccCCcch
Confidence 4469999999996655556799999999999999776 8999876654
No 118
>KOG1001|consensus
Probab=96.31 E-value=0.0015 Score=54.24 Aligned_cols=46 Identities=35% Similarity=0.852 Sum_probs=39.4
Q ss_pred cccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..|.+|.+ .. .++.+.|+|.||..|+...........||.||..+.
T Consensus 455 ~~c~ic~~-~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 54 889999999999999999887655457999999764
No 119
>KOG1451|consensus
Probab=96.27 E-value=0.0016 Score=52.27 Aligned_cols=24 Identities=38% Similarity=0.918 Sum_probs=22.6
Q ss_pred cCCeEEEEECCeEEeecCCCeEec
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
..+|..|.++|+.|++|.||||++
T Consensus 789 e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 789 EDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred CCCceeeecCCCcccCcccccCcC
Confidence 779999999999999999999975
No 120
>KOG1571|consensus
Probab=96.24 E-value=0.0035 Score=47.51 Aligned_cols=46 Identities=35% Similarity=0.702 Sum_probs=35.5
Q ss_pred CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+.....|.||.+-.. ..+.+||||.-| |..-.... ..||+||..+.
T Consensus 302 ~~~p~lcVVcl~e~~-~~~fvpcGh~cc--ct~cs~~l---~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPK-SAVFVPCGHVCC--CTLCSKHL---PQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCcc-ceeeecCCcEEE--chHHHhhC---CCCchhHHHHH
Confidence 445667999999999 679999999877 77654432 35999999765
No 121
>KOG0162|consensus
Probab=96.23 E-value=0.002 Score=53.15 Aligned_cols=23 Identities=39% Similarity=0.914 Sum_probs=21.6
Q ss_pred cCCeEEEEECCeEEeecCCCeEe
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQF 153 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~ 153 (162)
-++||.|+.+|+.|+||.+||++
T Consensus 1083 pSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1083 PSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred CCcchhhccCCcccccccccccc
Confidence 67999999999999999999975
No 122
>KOG4278|consensus
Probab=96.21 E-value=0.011 Score=48.75 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=54.7
Q ss_pred eeeEeeeec-----cceeeccCCCEEEEeEecCC-CeEEEEecCCCCceeeeeEEe-----cCCeEEEEECCe-------
Q psy9673 81 VSFIRFFLN-----ILDLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQI-----DNNWFYGEVNGT------- 142 (162)
Q Consensus 81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~~-~w~~g~~~~~~G~~P~~~v~~-----~~~w~~g~~~g~------- 142 (162)
...-.++|| ...|++.+|+.+.|+.-..+ .|.+.+..+.+||+|+||+.+ .-.|++|-+...
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSLeKhsWYHGpvSRsaaEy~Ls 169 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRSAAEYILS 169 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccchhhcccccCccccchhhhhhh
Confidence 344567888 66788999999988877655 599988766669999999997 347998877321
Q ss_pred EEeecCCCeEeccCCC
Q psy9673 143 TGAFPMSYVQFVWYLP 158 (162)
Q Consensus 143 ~g~~p~~~~~~~~~~~ 158 (162)
.||=-+..|+..+..|
T Consensus 170 SgInGSFLVRESEsSp 185 (1157)
T KOG4278|consen 170 SGINGSFLVRESESSP 185 (1157)
T ss_pred cCcccceEEeeccCCC
Confidence 3444444555554444
No 123
>KOG1843|consensus
Probab=96.20 E-value=0.00088 Score=51.44 Aligned_cols=24 Identities=42% Similarity=0.926 Sum_probs=21.9
Q ss_pred cCCeEEEEECCeEEeecCCCeEec
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
-+.||.|+.+|+.|+||+|||++.
T Consensus 450 ~~dwwtgr~~~~egifPanyv~~~ 473 (473)
T KOG1843|consen 450 ANDWWTGRGNGYEGIFPANYVSLS 473 (473)
T ss_pred hhhHHHhhccccccccccceeccC
Confidence 569999999999999999999863
No 124
>KOG1814|consensus
Probab=96.20 E-value=0.0016 Score=50.10 Aligned_cols=48 Identities=35% Similarity=0.924 Sum_probs=35.6
Q ss_pred CCccccccccccccC--CCEEcccCCccchhcHHHHHhc---CC---Ccccccccc
Q psy9673 7 NDLLECSVCLDRLDT--SSKVLPCQHTFCKKCLEEIVSS---HK---ELRCPECRV 54 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~--~p~~~~C~H~fC~~Cl~~~~~~---~~---~~~Cp~Cr~ 54 (162)
...+.|.||.+.... .-+-+||+|.||..|+..+... .+ ...||.+.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 456789999998853 4577899999999999988763 22 246666654
No 125
>KOG4773|consensus
Probab=96.15 E-value=0.0008 Score=50.61 Aligned_cols=41 Identities=34% Similarity=0.665 Sum_probs=37.6
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
..+|.+..|+++.+..+.+.+||.|+..|..|++|.+|+++
T Consensus 189 ~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ 229 (386)
T KOG4773|consen 189 KLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQ 229 (386)
T ss_pred cceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhh
Confidence 66888999999999999999999999999999999999886
No 126
>KOG2817|consensus
Probab=96.15 E-value=0.0039 Score=47.79 Aligned_cols=51 Identities=22% Similarity=0.563 Sum_probs=38.9
Q ss_pred CCCccccccccccc--cCCCEEcccCCccchhcHHHHHhcC-CCcccccccccc
Q psy9673 6 LNDLLECSVCLDRL--DTSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLV 56 (162)
Q Consensus 6 ~~~~l~C~iC~~~~--~~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~ 56 (162)
+...+-|||=.+-- .++|+.+.|||+.+..-+.+...++ .++.||.|....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 45678899755555 3479999999999999998865543 248999997754
No 127
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.12 E-value=0.003 Score=41.16 Aligned_cols=49 Identities=20% Similarity=0.555 Sum_probs=37.0
Q ss_pred ccccccccccccCCCEEc---ccCCccchhcHHHHHhcCC-Cccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVL---PCQHTFCKKCLEEIVSSHK-ELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~---~C~H~fC~~Cl~~~~~~~~-~~~Cp~Cr~~~~ 57 (162)
.-+|.||++...++-..- -||-..|..|-...+.... ...||+|+.+++
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 347999999987332222 2999999999987776532 359999999987
No 128
>KOG4739|consensus
Probab=96.07 E-value=0.0019 Score=46.40 Aligned_cols=44 Identities=25% Similarity=0.737 Sum_probs=31.5
Q ss_pred cccccccccccC-CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDT-SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..|..|...-+. +-.++.|+|+||..|...... . .||+|++++.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~--~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--D--VCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc--c--ccccccceee
Confidence 457777765543 345668999999999764222 2 7999999874
No 129
>KOG3775|consensus
Probab=96.03 E-value=0.0083 Score=45.81 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=37.6
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~~ 130 (162)
+++|.+..||-|.|....++-|++|. ..|++|+||+.|+..
T Consensus 276 pDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~e 318 (482)
T KOG3775|consen 276 PDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHE 318 (482)
T ss_pred cceeeeecCCeeEeeecccchhhccccccccccccccceeEEe
Confidence 88999999999999999999999998 468899999999875
No 130
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.00 E-value=0.0063 Score=32.01 Aligned_cols=40 Identities=18% Similarity=0.687 Sum_probs=23.6
Q ss_pred cccccccccCCCEEcc---cCCccchhcHHHHHhcCCCcccccc
Q psy9673 12 CSVCLDRLDTSSKVLP---CQHTFCKKCLEEIVSSHKELRCPEC 52 (162)
Q Consensus 12 C~iC~~~~~~~p~~~~---C~H~fC~~Cl~~~~~~~~~~~Cp~C 52 (162)
|.+|.++.. .-..-+ |+-.++..|+..++...+...||.|
T Consensus 1 C~~C~~iv~-~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT-QGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-S-SSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHe-eeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888887 444444 8889999999999987655579987
No 131
>KOG3800|consensus
Probab=95.99 E-value=0.005 Score=45.33 Aligned_cols=46 Identities=28% Similarity=0.730 Sum_probs=33.6
Q ss_pred ccccccccccC-C---CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLDT-S---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~-~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.||+|...... + ..+-+|+|..|.+|+.+.+.. +...||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhh
Confidence 48888754421 2 233489999999999998875 3458999998764
No 132
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.91 E-value=0.0057 Score=33.31 Aligned_cols=46 Identities=22% Similarity=0.557 Sum_probs=23.0
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHH---hcCCCccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV---SSHKELRCPECRVL 55 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~---~~~~~~~Cp~Cr~~ 55 (162)
.|.|++-...+..+.+...|.|.-|..- ..++ ...+.+.||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 3789999999986777778999877543 2232 23455899999763
No 133
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.81 E-value=0.0047 Score=46.67 Aligned_cols=49 Identities=24% Similarity=0.653 Sum_probs=38.0
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
++...|.||-+-+. -..++||+|..|.-|-.+...--..+.|+.||..-
T Consensus 59 Een~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 45667999999887 77899999999999987644322334899999854
No 134
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.78 E-value=0.0071 Score=44.64 Aligned_cols=49 Identities=24% Similarity=0.480 Sum_probs=38.2
Q ss_pred CCCccccccccccccC---CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
....+.|||....|.. -..+.+|||+|+..++.... ....||+|..++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence 3567789999999852 13455899999999999874 2237999999986
No 135
>KOG2528|consensus
Probab=95.59 E-value=0.0063 Score=47.40 Aligned_cols=48 Identities=23% Similarity=0.498 Sum_probs=36.6
Q ss_pred eEeeeec-----cceeeccCCCEEEEeEecC-CCeEEEE-ecCCCCceeeeeEEe
Q psy9673 83 FIRFFLN-----ILDLNFKKDDIVILRRKID-NNWFYGE-VNGTTGAFPMSYVQI 130 (162)
Q Consensus 83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~-~~w~~g~-~~~~~G~~P~~~v~~ 130 (162)
.++++|+ +.+++...++.+.+.+... ++|++|. ..|..|+||++||++
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV 58 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEV 58 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceee
Confidence 3556666 6678888888887766654 4898887 577889999988887
No 136
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.59 E-value=0.0056 Score=38.70 Aligned_cols=33 Identities=30% Similarity=0.668 Sum_probs=26.5
Q ss_pred CCccccccccccccC-CCEEcccCCccchhcHHH
Q psy9673 7 NDLLECSVCLDRLDT-SSKVLPCQHTFCKKCLEE 39 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~ 39 (162)
.+.-.|++|...+.+ .-.+.||||.|+..|+.|
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 456679999999964 356679999999999754
No 137
>KOG2114|consensus
Probab=95.52 E-value=0.0062 Score=50.96 Aligned_cols=43 Identities=35% Similarity=0.793 Sum_probs=35.7
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
...|..|...+.-+.+...|||+|+..|+.+ +...||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~-----~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLED-----KEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhcc-----CcccCCccchhh
Confidence 4579999999986778889999999999982 445899998743
No 138
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.42 E-value=0.017 Score=38.98 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=39.8
Q ss_pred ccCCCccccccccccccCCCEEcccCC-----ccchhcHHHHHhcCCCccccccccccc
Q psy9673 4 WTLNDLLECSVCLDRLDTSSKVLPCQH-----TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H-----~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+....+..|=||.+.-. + ...||.+ ..+.+|+.+|+..++...|+.|+..+.
T Consensus 3 ~~s~~~~~CRIC~~~~~-~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD-V-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CcCCCCCeeEecCCCCC-C-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34456778999998864 2 3456665 338999999999888889999999874
No 139
>KOG3161|consensus
Probab=95.37 E-value=0.004 Score=50.58 Aligned_cols=62 Identities=29% Similarity=0.596 Sum_probs=42.4
Q ss_pred CCCccccccccccccC---CCEEcccCCccchhcHHHHHhcCCCcccccccc---cccccccCCCcchhhhhh
Q psy9673 6 LNDLLECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV---LVECKVDELPPNVLLMRI 72 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~---~~~~~~~~l~~n~~l~~i 72 (162)
+.+.+.|+||...|.. .|+.+-|||+.|..|+...... .|| |.. .........+.|+.+...
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~----scp-~~~De~~~~~~~~e~p~n~alL~~ 75 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA----SCP-TKRDEDSSLMQLKEEPRNYALLRR 75 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc----cCC-CCccccchhcChhhcchhHHHHHh
Confidence 3467889999777732 5899999999999999876653 577 433 222335566677665443
No 140
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.09 E-value=0.018 Score=30.88 Aligned_cols=41 Identities=24% Similarity=0.755 Sum_probs=26.4
Q ss_pred cccccccccCC-CEEcccCCc-----cchhcHHHHHhcCCCcccccc
Q psy9673 12 CSVCLDRLDTS-SKVLPCQHT-----FCKKCLEEIVSSHKELRCPEC 52 (162)
Q Consensus 12 C~iC~~~~~~~-p~~~~C~H~-----fC~~Cl~~~~~~~~~~~Cp~C 52 (162)
|-||++.-.+. +.+.||... .+..|+.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 56788776533 577887753 488999999987666678877
No 141
>KOG1702|consensus
Probab=95.02 E-value=0.025 Score=39.78 Aligned_cols=25 Identities=52% Similarity=1.193 Sum_probs=22.7
Q ss_pred ecCCeEEEEE--CCeEEeecCCCeEec
Q psy9673 130 IDNNWFYGEV--NGTTGAFPMSYVQFV 154 (162)
Q Consensus 130 ~~~~w~~g~~--~g~~g~~p~~~~~~~ 154 (162)
+|++|-.|.. .|..|+.|+||+|.+
T Consensus 238 iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 238 IDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccCCceeeEEEeccccCCCchhheeeC
Confidence 4899999998 799999999999975
No 142
>KOG2932|consensus
Probab=94.97 E-value=0.013 Score=43.62 Aligned_cols=42 Identities=29% Similarity=0.756 Sum_probs=28.9
Q ss_pred ccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
.|.-|---+..--+.++|.|.||++|... ...+.||.|-..+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~----~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS----DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc----CccccCcCcccHH
Confidence 46666544433457789999999999753 2235899997765
No 143
>KOG3632|consensus
Probab=94.86 E-value=0.019 Score=48.96 Aligned_cols=41 Identities=32% Similarity=0.757 Sum_probs=36.2
Q ss_pred cceeeccCCCEEEEeEecCC-CeEEEEecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDN-NWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~-~w~~g~~~~~~G~~P~~~v~~ 130 (162)
..++.|..||+|.|..++|+ +.++|+++|..|++|++|.+-
T Consensus 1265 eAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1265 EAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEA 1306 (1335)
T ss_pred ceeeccccCCeEEeeccccCCcccccccCCccCccccccccC
Confidence 45788999999999888766 799999999999999999864
No 144
>KOG4445|consensus
Probab=94.85 E-value=0.0083 Score=44.48 Aligned_cols=50 Identities=28% Similarity=0.596 Sum_probs=38.2
Q ss_pred CccccccccccccCC--CEEcccCCccchhcHHHHHhc---------------------CCCccccccccccc
Q psy9673 8 DLLECSVCLDRLDTS--SKVLPCQHTFCKKCLEEIVSS---------------------HKELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~--p~~~~C~H~fC~~Cl~~~~~~---------------------~~~~~Cp~Cr~~~~ 57 (162)
..-.|.||+.=|... -.++.|-|-|+..|+.+++.. .....||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 456899999888543 477889999999999888651 11248999999774
No 145
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.80 E-value=0.0099 Score=42.70 Aligned_cols=55 Identities=33% Similarity=0.803 Sum_probs=38.4
Q ss_pred CCcccCCCccccccccccc--cCCCEEc--c-cCCccchhcHHHHHhcCCCcccc--cccccc
Q psy9673 1 MDEWTLNDLLECSVCLDRL--DTSSKVL--P-CQHTFCKKCLEEIVSSHKELRCP--ECRVLV 56 (162)
Q Consensus 1 ~~~~~~~~~l~C~iC~~~~--~~~p~~~--~-C~H~fC~~Cl~~~~~~~~~~~Cp--~Cr~~~ 56 (162)
|++.+-..+..||||.... .++.+.+ | |-|..|.+|+.+.++.+. ..|| -|.+-+
T Consensus 2 ~DE~~~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp-AqCP~~gC~kIL 63 (314)
T COG5220 2 MDEYEEMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP-AQCPYKGCGKIL 63 (314)
T ss_pred cchhhhhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC-CCCCCccHHHHH
Confidence 4444555677999998644 4332222 4 999999999999998643 5799 676644
No 146
>KOG4773|consensus
Probab=94.53 E-value=0.027 Score=42.66 Aligned_cols=28 Identities=36% Similarity=0.770 Sum_probs=25.0
Q ss_pred cCCeEEEEECCeEEeecCCCeEeccCCC
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQFVWYLP 158 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~~ 158 (162)
+..||.|...|..|+||.+|++.+..-|
T Consensus 207 ek~W~~gk~R~~~g~yp~sF~~~ld~fp 234 (386)
T KOG4773|consen 207 EKYWLLGKVRGLTGYYPDSFVKQLDDFP 234 (386)
T ss_pred ccceeeeeeccccccccHHhhhhhccCc
Confidence 7799999999999999999999985544
No 147
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=94.46 E-value=0.076 Score=29.08 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=26.3
Q ss_pred eccCCCEEEEeEecCCC-eEEE-EecCCCCceeeeeEE
Q psy9673 94 NFKKDDIVILRRKIDNN-WFYG-EVNGTTGAFPMSYVQ 129 (162)
Q Consensus 94 ~~~~gd~i~v~~~~~~~-w~~g-~~~~~~G~~P~~~v~ 129 (162)
.+..|+.+.+......+ |++. ..++..||++..|++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 36778888888887665 8888 567777888777763
No 148
>KOG0197|consensus
Probab=94.41 E-value=0.018 Score=45.63 Aligned_cols=58 Identities=29% Similarity=0.716 Sum_probs=47.0
Q ss_pred eEeeeec-----cceeeccCCCE-EEEeEecCCCeEEEEe--cCCCCceeeeeEEe-----------cCCeEEEEEC
Q psy9673 83 FIRFFLN-----ILDLNFKKDDI-VILRRKIDNNWFYGEV--NGTTGAFPMSYVQI-----------DNNWFYGEVN 140 (162)
Q Consensus 83 ~~~~~~~-----~~el~~~~gd~-i~v~~~~~~~w~~g~~--~~~~G~~P~~~v~~-----------~~~w~~g~~~ 140 (162)
...++|+ +.+|+|..|+. ..+.+..+..||..+. .+..|.+|+|||.. +++|+-|.+.
T Consensus 13 ~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~is 89 (468)
T KOG0197|consen 13 IVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKIS 89 (468)
T ss_pred eEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhcccc
Confidence 3445555 78999999999 7888888889999773 57789999999984 6799988874
No 149
>KOG0609|consensus
Probab=94.10 E-value=0.023 Score=45.45 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=32.8
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecC-----CCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNG-----TTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~-----~~G~~P~~~v~ 129 (162)
...++|++||++.+.++.|..||.+...| ..|++|+...+
T Consensus 235 Eagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q 279 (542)
T KOG0609|consen 235 EAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ 279 (542)
T ss_pred hcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence 45678999999999999999999988543 46999986554
No 150
>KOG1940|consensus
Probab=94.02 E-value=0.026 Score=41.72 Aligned_cols=44 Identities=30% Similarity=0.766 Sum_probs=35.9
Q ss_pred cccccccccccc---CCCEEcccCCccchhcHHHHHhcCCCcccccccc
Q psy9673 9 LLECSVCLDRLD---TSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 9 ~l~C~iC~~~~~---~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
...||+|.+.+. ..+..++|||....+|+....-. + +.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 344999999884 25788899999999999886664 3 89999988
No 151
>PHA03096 p28-like protein; Provisional
Probab=94.01 E-value=0.025 Score=42.23 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=31.6
Q ss_pred cccccccccccCC-------CEEcccCCccchhcHHHHHhcCC-Ccccccccc
Q psy9673 10 LECSVCLDRLDTS-------SKVLPCQHTFCKKCLEEIVSSHK-ELRCPECRV 54 (162)
Q Consensus 10 l~C~iC~~~~~~~-------p~~~~C~H~fC~~Cl~~~~~~~~-~~~Cp~Cr~ 54 (162)
-.|.||++..... -....|.|.||..|+..|..... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 4699999987532 23346999999999999987532 235666655
No 152
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.99 E-value=0.023 Score=30.19 Aligned_cols=32 Identities=31% Similarity=0.823 Sum_probs=21.8
Q ss_pred EEcccC-CccchhcHHHHHhcCCCccccccccccc
Q psy9673 24 KVLPCQ-HTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 24 ~~~~C~-H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-...|. |-.|..|+...+.... .||+|..+++
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~--~C~iC~~~LP 46 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSD--RCPICGKPLP 46 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSS--EETTTTEE--
T ss_pred CeeeecchhHHHHHHHHHhcccc--CCCcccCcCc
Confidence 445566 7889999998888555 8999999876
No 153
>KOG4362|consensus
Probab=93.85 E-value=0.015 Score=47.90 Aligned_cols=51 Identities=33% Similarity=0.850 Sum_probs=41.1
Q ss_pred CCCccccccccccccCCCEEcccCCccchhcHHHHHhcCC-Cccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~-~~~Cp~Cr~~~~ 57 (162)
+.-+++|+||...+. .|..+.|-|.||..|+...+.... ...||+|+....
T Consensus 18 ~~k~lEc~ic~~~~~-~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 18 MQKILECPICLEHVK-EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HhhhccCCceeEEee-ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 345789999999999 789999999999999876555332 458999997664
No 154
>KOG4429|consensus
Probab=93.60 E-value=0.022 Score=42.24 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=30.0
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~ 129 (162)
..++....|+++.+..+..++||.+++.|.-|.||+.|++
T Consensus 377 ddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iE 416 (421)
T KOG4429|consen 377 DDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIE 416 (421)
T ss_pred ccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHH
Confidence 5567788888888888877777777777777777766654
No 155
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.44 E-value=0.024 Score=37.26 Aligned_cols=34 Identities=26% Similarity=0.665 Sum_probs=27.2
Q ss_pred ccccccccccccC--CCEEcccC------CccchhcHHHHHh
Q psy9673 9 LLECSVCLDRLDT--SSKVLPCQ------HTFCKKCLEEIVS 42 (162)
Q Consensus 9 ~l~C~iC~~~~~~--~p~~~~C~------H~fC~~Cl~~~~~ 42 (162)
..+|.||.+.+.+ ..+.++|+ |.||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6789999999975 35555665 6799999999954
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.25 E-value=0.047 Score=41.34 Aligned_cols=48 Identities=27% Similarity=0.706 Sum_probs=33.1
Q ss_pred CccccccccccccC-C--CEEcccCCccchhcHHHHHhc-CCCccccccccccc
Q psy9673 8 DLLECSVCLDRLDT-S--SKVLPCQHTFCKKCLEEIVSS-HKELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~-~--p~~~~C~H~fC~~Cl~~~~~~-~~~~~Cp~Cr~~~~ 57 (162)
++..||+|.+-+.. + -.-.+||-..|..|.....+. .+ .||.||....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lng--rcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNG--RCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccC--CChHhhhhcc
Confidence 44559999998852 2 223468877788887665543 23 7999999764
No 157
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.19 E-value=0.059 Score=40.37 Aligned_cols=51 Identities=22% Similarity=0.513 Sum_probs=38.7
Q ss_pred CCCcccccccccccc--CCCEEcccCCccchhcHHHHHhcC-CCcccccccccc
Q psy9673 6 LNDLLECSVCLDRLD--TSSKVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLV 56 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~--~~p~~~~C~H~fC~~Cl~~~~~~~-~~~~Cp~Cr~~~ 56 (162)
+...+.|||=.+.-. ++|+.+.|||..-...+.+..+++ .++.||.|....
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~ 386 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMS 386 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence 466788998666653 479999999999999988755543 257999996643
No 158
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=92.83 E-value=0.29 Score=27.47 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=26.0
Q ss_pred eccCCCEEEEeEecCCCeEEEEec-CCCCceeeeeE
Q psy9673 94 NFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYV 128 (162)
Q Consensus 94 ~~~~gd~i~v~~~~~~~w~~g~~~-~~~G~~P~~~v 128 (162)
.+..|+.+.+.....++|...+.. |..||+|..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 467788888887755588888865 77888876654
No 159
>KOG0298|consensus
Probab=92.45 E-value=0.032 Score=48.92 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=40.3
Q ss_pred CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
....|.+|.+++.+.-.+..|||.+|..|...|+..+. .||.|....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s--~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS--RCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc--cCcchhhhh
Confidence 34579999999987778889999999999999998766 899998643
No 160
>PHA02862 5L protein; Provisional
Probab=92.16 E-value=0.13 Score=34.28 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=35.3
Q ss_pred cccccccccccCCCEEcccCC-----ccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDTSSKVLPCQH-----TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~~C~H-----~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..|=||.+.-. +. ..||.+ --+..|+.+|+...+...|+.|+..+.
T Consensus 3 diCWIC~~~~~-e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD-ER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCC-CC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35889998765 32 466664 348899999999877789999999874
No 161
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=92.15 E-value=0.069 Score=24.78 Aligned_cols=9 Identities=22% Similarity=0.678 Sum_probs=4.7
Q ss_pred ccccccccc
Q psy9673 12 CSVCLDRLD 20 (162)
Q Consensus 12 C~iC~~~~~ 20 (162)
||-|...+.
T Consensus 3 CP~C~~~V~ 11 (26)
T PF10571_consen 3 CPECGAEVP 11 (26)
T ss_pred CCCCcCCch
Confidence 555555554
No 162
>KOG3970|consensus
Probab=92.10 E-value=0.13 Score=36.83 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=37.6
Q ss_pred cccccccccccc-CCCEEcccCCccchhcHHHHHhcC------CCcccccccccc
Q psy9673 9 LLECSVCLDRLD-TSSKVLPCQHTFCKKCLEEIVSSH------KELRCPECRVLV 56 (162)
Q Consensus 9 ~l~C~iC~~~~~-~~p~~~~C~H~fC~~Cl~~~~~~~------~~~~Cp~Cr~~~ 56 (162)
.-.|.+|.-.+. .+.+.+-|-|.|+..|+.++..+- ..+.||.|...+
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 446999998884 367888999999999999887631 136899998765
No 163
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=91.77 E-value=0.023 Score=32.96 Aligned_cols=41 Identities=24% Similarity=0.597 Sum_probs=23.2
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
++.||.|...+... =+|.+|..|-..+... ..||.|..+++
T Consensus 1 e~~CP~C~~~L~~~-----~~~~~C~~C~~~~~~~---a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ-----GGHYHCEACQKDYKKE---AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE-----TTEEEETTT--EEEEE---EE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe-----CCEEECccccccceec---ccCCCcccHHH
Confidence 46799999887622 1788899998765443 37999998875
No 164
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.55 E-value=0.1 Score=40.24 Aligned_cols=30 Identities=27% Similarity=0.811 Sum_probs=23.4
Q ss_pred cCCccchhcHHHHHhcCC-----------Cccccccccccc
Q psy9673 28 CQHTFCKKCLEEIVSSHK-----------ELRCPECRVLVE 57 (162)
Q Consensus 28 C~H~fC~~Cl~~~~~~~~-----------~~~Cp~Cr~~~~ 57 (162)
|....|..|+-+|+.+++ ...||.||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 555679999999987543 358999999874
No 165
>KOG1100|consensus
Probab=91.41 E-value=0.08 Score=37.75 Aligned_cols=39 Identities=36% Similarity=0.795 Sum_probs=30.5
Q ss_pred cccccccccCCCEEcccCC-ccchhcHHHHHhcCCCccccccccccc
Q psy9673 12 CSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 12 C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
|-.|.+.=. ...++||.| .+|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~-~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREA-TVLLLPCRHLCLCGICDES------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCc-eEEeecccceEeccccccc------CccCCCCcChhh
Confidence 888888777 678899998 789999643 226999988654
No 166
>KOG1952|consensus
Probab=90.86 E-value=0.12 Score=43.77 Aligned_cols=48 Identities=31% Similarity=0.804 Sum_probs=36.2
Q ss_pred CCccccccccccccCCCEEcc---cCCccchhcHHHHHhcC-----CCcccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLP---CQHTFCKKCLEEIVSSH-----KELRCPECRV 54 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~---C~H~fC~~Cl~~~~~~~-----~~~~Cp~Cr~ 54 (162)
....+|.||.+.+....-+-+ |-|+|+..||.+|..+. ..+.||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 345689999999964333333 66999999999998742 3489999984
No 167
>KOG2222|consensus
Probab=90.80 E-value=0.067 Score=42.52 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=26.5
Q ss_pred eeeEEecCCeEEEEECCeEEeecCCCeEecc
Q psy9673 125 MSYVQIDNNWFYGEVNGTTGAFPMSYVQFVW 155 (162)
Q Consensus 125 ~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~~ 155 (162)
.-..+.||+=|-|+++|-.|+||+.|||++.
T Consensus 574 tiisekdehcwvgelnglrgwfpakfvelld 604 (848)
T KOG2222|consen 574 TIISEKDEHCWVGELNGLRGWFPAKFVELLD 604 (848)
T ss_pred EEeecCCcceeeeccccccccchHHHHHHHH
Confidence 3345559999999999999999999999874
No 168
>KOG1428|consensus
Probab=90.65 E-value=0.19 Score=45.40 Aligned_cols=50 Identities=20% Similarity=0.570 Sum_probs=37.5
Q ss_pred Cccccccccccc-c-CCCEEcccCCccchhcHHHHHhcC--C------Cccccccccccc
Q psy9673 8 DLLECSVCLDRL-D-TSSKVLPCQHTFCKKCLEEIVSSH--K------ELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~-~-~~p~~~~C~H~fC~~Cl~~~~~~~--~------~~~Cp~Cr~~~~ 57 (162)
.+..|-||.-.- . .+.+.+.|+|.|+..|..+.+.++ + -+.||+|...+.
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 456788997554 2 256888999999999999888753 1 158999988764
No 169
>KOG1812|consensus
Probab=90.43 E-value=0.11 Score=40.55 Aligned_cols=46 Identities=30% Similarity=0.795 Sum_probs=30.9
Q ss_pred cccccccc-ccccC--CCEEcccCCccchhcHHHHHhcC----CCcccccccc
Q psy9673 9 LLECSVCL-DRLDT--SSKVLPCQHTFCKKCLEEIVSSH----KELRCPECRV 54 (162)
Q Consensus 9 ~l~C~iC~-~~~~~--~p~~~~C~H~fC~~Cl~~~~~~~----~~~~Cp~Cr~ 54 (162)
...|.||. +.... ...+..|+|.||..|+.+++..+ ..+.||.-+-
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C 198 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGC 198 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCC
Confidence 45799999 44431 12356799999999999887732 3356655433
No 170
>KOG3039|consensus
Probab=90.28 E-value=0.21 Score=36.23 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.8
Q ss_pred cCCCccccccccccccCCCEEcccCCccchhcHHHHHh
Q psy9673 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS 42 (162)
Q Consensus 5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~ 42 (162)
.+++...|++|+.-+. +|++++=||.||..||.+++-
T Consensus 39 siK~FdcCsLtLqPc~-dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCR-DPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeeccccc-CCccCCCCeeeeHHHHHHHHH
Confidence 3456668899999999 899999999999999987765
No 171
>KOG3268|consensus
Probab=90.17 E-value=0.2 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=24.6
Q ss_pred ccCCccchhcHHHHHhc----CCC-----ccccccccccc
Q psy9673 27 PCQHTFCKKCLEEIVSS----HKE-----LRCPECRVLVE 57 (162)
Q Consensus 27 ~C~H~fC~~Cl~~~~~~----~~~-----~~Cp~Cr~~~~ 57 (162)
.||..|+.-|+..|++. +++ -.||.|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 59999999999999872 222 27999988775
No 172
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.68 E-value=0.32 Score=32.94 Aligned_cols=34 Identities=18% Similarity=0.711 Sum_probs=21.6
Q ss_pred CccccccccccccCCCEEcc------------cCCcc-chhcHHHHHh
Q psy9673 8 DLLECSVCLDRLDTSSKVLP------------CQHTF-CKKCLEEIVS 42 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~------------C~H~f-C~~Cl~~~~~ 42 (162)
++..||||++.-= ..++|- |+.+| +..||.++..
T Consensus 1 ed~~CpICme~PH-NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPH-NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCC-ceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 4678999999876 445553 33222 4577776654
No 173
>KOG4575|consensus
Probab=89.55 E-value=0.21 Score=41.00 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=16.7
Q ss_pred ecCCeEEEEE---CCeEEeecCCCeEec
Q psy9673 130 IDNNWFYGEV---NGTTGAFPMSYVQFV 154 (162)
Q Consensus 130 ~~~~w~~g~~---~g~~g~~p~~~~~~~ 154 (162)
+.++||+|.+ ..-.|+||+|||-.+
T Consensus 38 I~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 38 IEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred eccceeeeeeeecccccccCcccceeec
Confidence 3555555544 356999999999443
No 174
>KOG3523|consensus
Probab=89.28 E-value=0.036 Score=45.01 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=28.5
Q ss_pred CceeeeeEEecCCeEEEEE--CCeEEeecCCCeEeccC
Q psy9673 121 GAFPMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVWY 156 (162)
Q Consensus 121 G~~P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~~ 156 (162)
|.++..+-+..++|.+|+= +|-.|+||..||+.+..
T Consensus 630 ~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 630 ADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred hhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 4444445555899999987 69999999999998754
No 175
>KOG3812|consensus
Probab=89.09 E-value=0.11 Score=39.54 Aligned_cols=36 Identities=22% Similarity=0.577 Sum_probs=30.4
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEe---cCCCCceee
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPM 125 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~---~~~~G~~P~ 125 (162)
...++|...|.+.+..+-+++||.|++ ....||+|+
T Consensus 79 g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 79 GHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred CceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 446789999999999999999999994 345699996
No 176
>KOG2034|consensus
Probab=88.80 E-value=0.21 Score=42.50 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=29.4
Q ss_pred CCCccccccccccccC-CCEEcccCCccchhcHHHHHh
Q psy9673 6 LNDLLECSVCLDRLDT-SSKVLPCQHTFCKKCLEEIVS 42 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~~~~ 42 (162)
++..-.|.+|..-+.. +-.+.+|||.|+..|+.+.+.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3556689999988854 456679999999999987765
No 177
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=88.33 E-value=1.4 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=24.7
Q ss_pred eeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128 (162)
Q Consensus 93 l~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v 128 (162)
..+..|..+.+... ..+|.+.+.+|..||++.+.+
T Consensus 19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 44666777777743 668888888888888876543
No 178
>KOG1815|consensus
Probab=88.25 E-value=0.23 Score=39.61 Aligned_cols=36 Identities=25% Similarity=0.706 Sum_probs=30.3
Q ss_pred CccccccccccccCCCEEcccCCccchhcHHHHHhc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS 43 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~ 43 (162)
.+.+|.||.+.+......+.|||.||..|+..++..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 457899999999744677789999999999998874
No 179
>KOG2528|consensus
Probab=88.02 E-value=0.16 Score=39.87 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=22.6
Q ss_pred cCCeEEEEE-CCeEEeecCCCeEecc
Q psy9673 131 DNNWFYGEV-NGTTGAFPMSYVQFVW 155 (162)
Q Consensus 131 ~~~w~~g~~-~g~~g~~p~~~~~~~~ 155 (162)
.++||+|.- .|..|+||+.|||.+.
T Consensus 35 ~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 35 IEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred ccccccCCCccCccCCCcccceeeec
Confidence 679999998 6999999999999874
No 180
>KOG0199|consensus
Probab=87.06 E-value=0.94 Score=38.33 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=37.7
Q ss_pred eeEeeeec---cceeeccCCCEEEEeEecCC-CeEEEE--ecCCCCceeeeeEEe
Q psy9673 82 SFIRFFLN---ILDLNFKKDDIVILRRKIDN-NWFYGE--VNGTTGAFPMSYVQI 130 (162)
Q Consensus 82 ~~~~~~~~---~~el~~~~gd~i~v~~~~~~-~w~~g~--~~~~~G~~P~~~v~~ 130 (162)
..++..|+ ++.|-++.||.|.|++.... .||+|. .+++.|.||.+-|..
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 34556666 78899999999998887664 688885 467789999887763
No 181
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=86.98 E-value=0.17 Score=27.86 Aligned_cols=40 Identities=28% Similarity=0.613 Sum_probs=23.1
Q ss_pred CccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
+.+.||.|.+.++ .. .+..-|............||+|...
T Consensus 1 ~~f~CP~C~~~~~-~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFS-ES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccC-HH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 3578999998655 21 1223333333333345789999764
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.90 E-value=0.74 Score=32.85 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=26.6
Q ss_pred eccCCCEEEEeEecC-CCeEEEE-ecCCCCceeeeeEE
Q psy9673 94 NFKKDDIVILRRKID-NNWFYGE-VNGTTGAFPMSYVQ 129 (162)
Q Consensus 94 ~~~~gd~i~v~~~~~-~~w~~g~-~~~~~G~~P~~~v~ 129 (162)
.+..|+.+.++...+ .+|...+ .+|+.||++..|+.
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls 86 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLS 86 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhc
Confidence 477888888887765 4788887 46777888877764
No 183
>KOG3579|consensus
Probab=86.47 E-value=0.38 Score=35.70 Aligned_cols=45 Identities=31% Similarity=0.691 Sum_probs=30.7
Q ss_pred CccccccccccccCCCE-Ecc--cCCccchhcHHHHHhcCC---Ccccccc
Q psy9673 8 DLLECSVCLDRLDTSSK-VLP--CQHTFCKKCLEEIVSSHK---ELRCPEC 52 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~-~~~--C~H~fC~~Cl~~~~~~~~---~~~Cp~C 52 (162)
.-|.|.+|.+.|.+.-. ..+ =.|.||.-|-++.++.++ ...||.=
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG 317 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG 317 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC
Confidence 45899999999984322 222 369999999988776532 3455543
No 184
>KOG3113|consensus
Probab=86.06 E-value=0.52 Score=34.40 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=34.4
Q ss_pred CCccccccccccccCC---CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTS---SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~---p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+..+.|||-.-.+... ....+|||.|-.+.+.+... . .|++|.+.++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika--s--~C~~C~a~y~ 158 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA--S--VCHVCGAAYQ 158 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh--c--cccccCCccc
Confidence 3456788866666422 34558999999988887654 2 7999999886
No 185
>KOG4429|consensus
Probab=85.83 E-value=0.24 Score=36.97 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=29.6
Q ss_pred ecCCCCceeeeeEEecCCeEEEEECCeEEeecCCCeEec
Q psy9673 116 VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 116 ~~~~~G~~P~~~v~~~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
++|..|-+-...-.-.++||-+++.|+.|-||+.|+|..
T Consensus 380 l~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 380 LGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred cCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 455556555433334889999999999999999999853
No 186
>KOG3899|consensus
Probab=85.35 E-value=0.4 Score=35.74 Aligned_cols=30 Identities=30% Similarity=0.844 Sum_probs=22.9
Q ss_pred cCCccchhcHHHHHhc-----------CCCccccccccccc
Q psy9673 28 CQHTFCKKCLEEIVSS-----------HKELRCPECRVLVE 57 (162)
Q Consensus 28 C~H~fC~~Cl~~~~~~-----------~~~~~Cp~Cr~~~~ 57 (162)
|....|.+|+.+|... .++..||.||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5667789999988763 23468999999774
No 187
>KOG3771|consensus
Probab=85.10 E-value=0.45 Score=37.69 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=24.9
Q ss_pred eeeEeeeec-----cceeeccCCCEEEEeEecC-CCeEEEEecCC
Q psy9673 81 VSFIRFFLN-----ILDLNFKKDDIVILRRKID-NNWFYGEVNGT 119 (162)
Q Consensus 81 ~~~~~~~~~-----~~el~~~~gd~i~v~~~~~-~~w~~g~~~~~ 119 (162)
...++++|+ .++|.|+.|+.|.|....+ +.||.|.+.|.
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ 444 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGV 444 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhh
Confidence 344566666 8899999999997776432 24444444443
No 188
>KOG3775|consensus
Probab=84.79 E-value=0.54 Score=36.34 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=22.2
Q ss_pred cCCeEEEEE--CCeEEeecCCCeEecc
Q psy9673 131 DNNWFYGEV--NGTTGAFPMSYVQFVW 155 (162)
Q Consensus 131 ~~~w~~g~~--~g~~g~~p~~~~~~~~ 155 (162)
|+-|++|-- .|..|+||+.|+-.+.
T Consensus 294 dD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 294 DDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred cchhhccccccccccccccceeEEecC
Confidence 889999988 6999999999987763
No 189
>KOG2169|consensus
Probab=82.82 E-value=1.1 Score=37.42 Aligned_cols=72 Identities=21% Similarity=0.409 Sum_probs=48.9
Q ss_pred cCCCccccccccccccCCCEEcccCCccchhcHHHHHh--cCCCcccccccccccccccCCCcchhhhhhhhcccc
Q psy9673 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS--SHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP 78 (162)
Q Consensus 5 ~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~--~~~~~~Cp~Cr~~~~~~~~~l~~n~~l~~i~e~~~~ 78 (162)
.+.-.|.|+++.-.+.-+.+-..|.|.-|..-..-... ...++.||+|.+... -..+.....+..++.....
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~--~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP--FEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc--ccchhhhHHHHHHHhhccC
Confidence 45567889998877775677777888777665432111 245789999999776 4566666666666666555
No 190
>KOG2199|consensus
Probab=81.77 E-value=0.37 Score=37.43 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.1
Q ss_pred EEEECCeEEeecCCCeEeccCCCCCC
Q psy9673 136 YGEVNGTTGAFPMSYVQFVWYLPIIN 161 (162)
Q Consensus 136 ~g~~~g~~g~~p~~~~~~~~~~~~~~ 161 (162)
.|++++.+|+||+|||....+.++++
T Consensus 252 KG~~~~~~GlFPsnfVT~~le~~~~e 277 (462)
T KOG2199|consen 252 KGENHRGIGLFPSNFVTADLEEPKIE 277 (462)
T ss_pred ccccCCcccccchhhhhhhhcccchh
Confidence 48889999999999999988766655
No 191
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.91 E-value=1.9 Score=25.13 Aligned_cols=43 Identities=26% Similarity=0.656 Sum_probs=30.0
Q ss_pred ccccccccccC---CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.|--|-..+-. +..+..=.|+||..|....+. + .||-|+..+.
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~--g--~CPnCGGelv 52 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH--G--LCPNCGGELV 52 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc--C--cCCCCCchhh
Confidence 35556666632 344444458999999987665 4 7999999876
No 192
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=80.29 E-value=3.3 Score=22.90 Aligned_cols=44 Identities=30% Similarity=0.716 Sum_probs=31.2
Q ss_pred cccccccccccCCC-EEcccC--CccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDTSS-KVLPCQ--HTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~~p-~~~~C~--H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-.|--|...+..+. --..|. .+||..|....+. + .||-|+..+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~--~--~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN--G--VCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc--C--cCcCCCCccc
Confidence 35777888885322 223354 6999999998775 3 7999998876
No 193
>KOG4278|consensus
Probab=80.13 E-value=1.1 Score=37.50 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.4
Q ss_pred cCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQFVWYL 157 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~ 157 (162)
+++|.+++..+-+|++|+||.-++-.|
T Consensus 123 NgEWcEartKNGqGWVPSNyItPvNSL 149 (1157)
T KOG4278|consen 123 NGEWCEARTKNGQGWVPSNYITPVNSL 149 (1157)
T ss_pred CCcceeecccCCCccccccccccccch
Confidence 789999999655699999999887443
No 194
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=79.80 E-value=1.4 Score=24.24 Aligned_cols=31 Identities=26% Similarity=0.666 Sum_probs=22.9
Q ss_pred ccccccccccc--cCCCEEcc-cCCccchhcHHH
Q psy9673 9 LLECSVCLDRL--DTSSKVLP-CQHTFCKKCLEE 39 (162)
Q Consensus 9 ~l~C~iC~~~~--~~~p~~~~-C~H~fC~~Cl~~ 39 (162)
.-.|++|.+.| .++.++-+ ||-.++..|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34699999999 43444444 999999999754
No 195
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3875|consensus
Probab=78.11 E-value=1 Score=33.95 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=16.2
Q ss_pred CCeEEE-Ee-cCCCCceeeeeEEe
Q psy9673 109 NNWFYG-EV-NGTTGAFPMSYVQI 130 (162)
Q Consensus 109 ~~w~~g-~~-~~~~G~~P~~~v~~ 130 (162)
..||.. +. ++..|+||.|||++
T Consensus 306 ~~gW~lat~dg~~tG~iP~NYvkI 329 (362)
T KOG3875|consen 306 CEGWLLATRDGGTTGLIPINYVKI 329 (362)
T ss_pred CcceeeeeccCCeeeeeehhhhhh
Confidence 445554 45 56789999999976
No 197
>KOG4185|consensus
Probab=78.11 E-value=0.37 Score=36.15 Aligned_cols=45 Identities=29% Similarity=0.687 Sum_probs=36.7
Q ss_pred ccccccccccc-C----CCEEcc--------cCCccchhcHHHHHhcCCCccccccccc
Q psy9673 10 LECSVCLDRLD-T----SSKVLP--------CQHTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 10 l~C~iC~~~~~-~----~p~~~~--------C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
..|.+|...+. + .|.++. |||+.|..|+...+.... ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 45889988886 2 377777 999999999998887655 789999874
No 198
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=77.99 E-value=1.8 Score=30.82 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=29.8
Q ss_pred eeccCCCEEEEeEecCC-CeEEEEe-cCCCCceeeeeEEe
Q psy9673 93 LNFKKDDIVILRRKIDN-NWFYGEV-NGTTGAFPMSYVQI 130 (162)
Q Consensus 93 l~~~~gd~i~v~~~~~~-~w~~g~~-~~~~G~~P~~~v~~ 130 (162)
-..+.|+.+.|...... +|...++ +|+.||||..++..
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~ 87 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS 87 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence 35788999988888665 7999985 67889999766654
No 199
>KOG1812|consensus
Probab=77.20 E-value=1.3 Score=34.77 Aligned_cols=37 Identities=19% Similarity=0.467 Sum_probs=26.5
Q ss_pred ccccccccccccC----CCEEcccCCccchhcHHHHHhcCC
Q psy9673 9 LLECSVCLDRLDT----SSKVLPCQHTFCKKCLEEIVSSHK 45 (162)
Q Consensus 9 ~l~C~iC~~~~~~----~p~~~~C~H~fC~~Cl~~~~~~~~ 45 (162)
-..|+.|.-.+.- -.++..|||-||+.|...|...++
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~ 346 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNG 346 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCc
Confidence 3468888877631 145556999999999988877544
No 200
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=77.10 E-value=1.2 Score=25.45 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=9.4
Q ss_pred ccchhcHHHHHhc
Q psy9673 31 TFCKKCLEEIVSS 43 (162)
Q Consensus 31 ~fC~~Cl~~~~~~ 43 (162)
.||..||.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 201
>PLN02436 cellulose synthase A
Probab=77.05 E-value=1.9 Score=37.96 Aligned_cols=46 Identities=24% Similarity=0.698 Sum_probs=33.3
Q ss_pred cccccccccc----CCCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLD----TSSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~----~~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-|.||.+.+- .++.+. .|+-..|..|.+- -...++..||.|+...+
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 6999999973 135544 3888889999953 33334568999999875
No 202
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=76.18 E-value=2.9 Score=24.79 Aligned_cols=47 Identities=23% Similarity=0.586 Sum_probs=19.0
Q ss_pred ccccccccccc----CCCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLD----TSSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~----~~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..|.||.+.+- .++.++ .|+-..|..|..--... +...||.|+..+.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke-g~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE-GNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT-S-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc-CcccccccCCCcc
Confidence 46999998873 134444 47778899998744443 4458999998775
No 203
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=74.90 E-value=1.2 Score=23.82 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=28.0
Q ss_pred ccccccccccCCCEEc--ccCCccchhcHHHHHh----cCCCcccccccc
Q psy9673 11 ECSVCLDRLDTSSKVL--PCQHTFCKKCLEEIVS----SHKELRCPECRV 54 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~--~C~H~fC~~Cl~~~~~----~~~~~~Cp~Cr~ 54 (162)
.|.||...-.....+. .|+..|+..|+..... ....+.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3788888444333433 4888899999864433 123578888853
No 204
>PLN02189 cellulose synthase
Probab=74.63 E-value=2.4 Score=37.24 Aligned_cols=46 Identities=24% Similarity=0.642 Sum_probs=32.9
Q ss_pred ccccccccccC----CCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLDT----SSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~----~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.|.||.+.+.. ++.+. .|+-..|..|.+- -...++..||.|+...+
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 69999999742 34444 3777789999953 33334568999999876
No 205
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=74.39 E-value=2.5 Score=37.33 Aligned_cols=46 Identities=24% Similarity=0.669 Sum_probs=33.6
Q ss_pred cccccccccc----CCCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLD----TSSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~----~~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-|.||.+.+- .++.+. .|+-..|..|.+ +-...++..||.|+..++
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 6999999873 135544 488888999994 444445568999999875
No 206
>KOG0515|consensus
Probab=74.35 E-value=0.69 Score=37.49 Aligned_cols=34 Identities=21% Similarity=0.626 Sum_probs=25.8
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYV 128 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v 128 (162)
.+++. +|.-.+..+..||..+++|++|.+|.||.
T Consensus 705 Gd~lT-----virr~d~~eteWWwa~lng~eGyVPRnyl 738 (752)
T KOG0515|consen 705 GDELT-----VIRRDDEVETEWWWARLNGEEGYVPRNYL 738 (752)
T ss_pred CceeE-----EEecCCcchhhhhhHhhcCcccccchhhh
Confidence 45555 33444455889999999999999999987
No 207
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=74.29 E-value=2.1 Score=20.82 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=7.5
Q ss_pred Cccccccccc
Q psy9673 46 ELRCPECRVL 55 (162)
Q Consensus 46 ~~~Cp~Cr~~ 55 (162)
...||+|++.
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 3589999774
No 208
>KOG3565|consensus
Probab=74.21 E-value=0.72 Score=38.50 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=23.5
Q ss_pred cceeeccCCCEEEEeEecC-CCeEEEE--ecCCCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVILRRKID-NNWFYGE--VNGTTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~-~~w~~g~--~~~~~G~~P~~~v~ 129 (162)
...++...|+++.++.... ++|-+++ .++..|.+|.+|++
T Consensus 592 ~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~ 634 (640)
T KOG3565|consen 592 EGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLD 634 (640)
T ss_pred CCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccc
Confidence 4566777777776655543 4666666 44445555555553
No 209
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=73.22 E-value=3 Score=35.75 Aligned_cols=72 Identities=17% Similarity=0.408 Sum_probs=50.7
Q ss_pred CCccccccccccc-cCCCEEcccCCc-----cchhcHHHHHhcCCCccccccccccc-------ccccCCCcchhhhhhh
Q psy9673 7 NDLLECSVCLDRL-DTSSKVLPCQHT-----FCKKCLEEIVSSHKELRCPECRVLVE-------CKVDELPPNVLLMRIL 73 (162)
Q Consensus 7 ~~~l~C~iC~~~~-~~~p~~~~C~H~-----fC~~Cl~~~~~~~~~~~Cp~Cr~~~~-------~~~~~l~~n~~l~~i~ 73 (162)
+++..|-||...- .+.|.--||.++ .+.+|+.+|+..++...|-.|..+++ .-++.+|-...+.++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPfsiL~rk~a 89 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFSILIRKVA 89 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccceehhHHHHH
Confidence 4667899998665 335666677654 38899999999888889999999764 2245555566666665
Q ss_pred hcccc
Q psy9673 74 EGLFP 78 (162)
Q Consensus 74 e~~~~ 78 (162)
....+
T Consensus 90 ~t~~~ 94 (1175)
T COG5183 90 DTGWK 94 (1175)
T ss_pred HHHHH
Confidence 55544
No 210
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=72.73 E-value=2.8 Score=26.55 Aligned_cols=28 Identities=29% Similarity=0.822 Sum_probs=20.8
Q ss_pred CCccchhcHHHHHhc-------CCCcccccccccc
Q psy9673 29 QHTFCKKCLEEIVSS-------HKELRCPECRVLV 56 (162)
Q Consensus 29 ~H~fC~~Cl~~~~~~-------~~~~~Cp~Cr~~~ 56 (162)
.-.||..||...... ...+.||.||..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 667999998766542 3458999999843
No 211
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=72.60 E-value=0.64 Score=20.79 Aligned_cols=7 Identities=43% Similarity=1.298 Sum_probs=3.7
Q ss_pred ccccccc
Q psy9673 48 RCPECRV 54 (162)
Q Consensus 48 ~Cp~Cr~ 54 (162)
.||.|+.
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 4555554
No 212
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=71.65 E-value=7.1 Score=23.07 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=18.5
Q ss_pred eeeccCCCEEEEeEec------CCCeEEEE
Q psy9673 92 DLNFKKDDIVILRRKI------DNNWFYGE 115 (162)
Q Consensus 92 el~~~~gd~i~v~~~~------~~~w~~g~ 115 (162)
.|..+.||.+.+.... +.+||.|.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEE
Confidence 4678889988886654 56899987
No 213
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=71.53 E-value=0.84 Score=29.48 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=30.6
Q ss_pred Cccccccccccc---cC-CCEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673 8 DLLECSVCLDRL---DT-SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 8 ~~l~C~iC~~~~---~~-~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
.+-.|.+|...| .+ ...-..|+|.+|..|-.. ......+.|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHH
Confidence 456899998765 22 233446999999999765 223355789999764
No 214
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=71.37 E-value=7.4 Score=21.55 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=19.4
Q ss_pred eccCCCEEEEeEecCCCeEEEEec
Q psy9673 94 NFKKDDIVILRRKIDNNWFYGEVN 117 (162)
Q Consensus 94 ~~~~gd~i~v~~~~~~~w~~g~~~ 117 (162)
.|..|+.+.+....+..||.|.+-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 477899998888778889999753
No 215
>KOG4718|consensus
Probab=71.28 E-value=1.9 Score=30.74 Aligned_cols=46 Identities=17% Similarity=0.522 Sum_probs=34.7
Q ss_pred cccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-.|.+|..+.....+--+|+=.++..|+..++++.. .||.|....+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~--~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRD--ICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccC--cCCchhcccC
Confidence 369999999873333345776788899999998754 8999977554
No 216
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=68.06 E-value=3.9 Score=24.89 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=22.9
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYV 128 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v 128 (162)
..+|...+|+++.|....++.-+-.+ ..|+=|.+|.+++
T Consensus 30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L 69 (89)
T PF14603_consen 30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHL 69 (89)
T ss_dssp TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHc
Confidence 45889999999999988887655555 4566666666555
No 217
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=67.57 E-value=4.2 Score=35.84 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=33.7
Q ss_pred cccccccccccC----CCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDT----SSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~----~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.-|.||.+.+-. ++.+. .|+-..|..|.+ +-...++..||.|+....
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 359999998731 35544 488888999994 333345568999999876
No 218
>PLN02400 cellulose synthase
Probab=67.19 E-value=3.3 Score=36.60 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=33.2
Q ss_pred ccccccccccC----CCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLDT----SSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~----~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-|.||.+.+-. ++.+. .|+-..|..|.+ +-...++..||.|+...+
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 69999998731 35544 477788999984 333335568999999876
No 219
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.17 E-value=2.8 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=13.6
Q ss_pred cccccccCCCEEcccCCccchh
Q psy9673 14 VCLDRLDTSSKVLPCQHTFCKK 35 (162)
Q Consensus 14 iC~~~~~~~p~~~~C~H~fC~~ 35 (162)
||+.--. ..+...|||+||..
T Consensus 62 i~qs~~~-rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQK-RVIRCECGHSFGDY 82 (165)
T ss_pred EEecccc-cEEEEeccccccCh
Confidence 4544333 45666899999964
No 220
>PLN02195 cellulose synthase A
Probab=66.93 E-value=4.8 Score=35.26 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=33.9
Q ss_pred cccccccccccC----CCEEc--ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDT----SSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~----~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.-|.||.+.+.. ++.+. .|+-..|..|.+ +-...++..||.|+...+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 369999997732 34444 488888999994 444445568999999876
No 221
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=66.83 E-value=8.3 Score=31.21 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=24.6
Q ss_pred eccCCCEEEEeEecCCCeEEEEec-CCCCceeeeeEE
Q psy9673 94 NFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYVQ 129 (162)
Q Consensus 94 ~~~~gd~i~v~~~~~~~w~~g~~~-~~~G~~P~~~v~ 129 (162)
.+..|+.+.++...+.+|+..+.+ |+.||+-..|+.
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs 140 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLT 140 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEeccccc
Confidence 467778777765455677777764 677777666663
No 222
>KOG0825|consensus
Probab=65.48 E-value=3.6 Score=35.18 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=33.3
Q ss_pred ccccccccccccCC---CEEcc---cCCccchhcHHHHHhc----CCCcccccccccc
Q psy9673 9 LLECSVCLDRLDTS---SKVLP---CQHTFCKKCLEEIVSS----HKELRCPECRVLV 56 (162)
Q Consensus 9 ~l~C~iC~~~~~~~---p~~~~---C~H~fC~~Cl~~~~~~----~~~~~Cp~Cr~~~ 56 (162)
...|.+|.-.++++ --..+ |+|.||..||..|... .....|+.|...+
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 45688888888731 22233 9999999999988753 2334678887766
No 223
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=65.09 E-value=5.3 Score=25.44 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=10.3
Q ss_pred CCccccccccccc
Q psy9673 45 KELRCPECRVLVE 57 (162)
Q Consensus 45 ~~~~Cp~Cr~~~~ 57 (162)
..++||.|+..+.
T Consensus 25 ~PivCP~CG~~~~ 37 (108)
T PF09538_consen 25 DPIVCPKCGTEFP 37 (108)
T ss_pred CCccCCCCCCccC
Confidence 4568999998776
No 224
>KOG2807|consensus
Probab=64.35 E-value=5.7 Score=30.32 Aligned_cols=42 Identities=26% Similarity=0.620 Sum_probs=25.7
Q ss_pred cccccccccccCCCEEc--ccCCccchhcHHHHHhcCCCccccccc
Q psy9673 10 LECSVCLDRLDTSSKVL--PCQHTFCKKCLEEIVSSHKELRCPECR 53 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr 53 (162)
..|-.|++.+....... .|.+.||..|=. +.+..--.||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv--~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDV--FIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchH--HHHhhhhcCCCcC
Confidence 34888876665343333 588999999943 2221222688885
No 225
>KOG0040|consensus
Probab=63.27 E-value=0.22 Score=44.89 Aligned_cols=41 Identities=32% Similarity=0.606 Sum_probs=30.7
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
+.+.+.+.||+.++....+.+||..+.+-+.|++|+.||+.
T Consensus 982 prev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~ 1022 (2399)
T KOG0040|consen 982 PREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKR 1022 (2399)
T ss_pred HHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHH
Confidence 56777889999888888787777777776667766666653
No 226
>KOG3557|consensus
Probab=61.76 E-value=2.2 Score=35.37 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=32.6
Q ss_pred eEeeeec-----cceeeccCCCEEEEeEecCCCeEEEE-ecCCCCceeeeeEEe
Q psy9673 83 FIRFFLN-----ILDLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130 (162)
Q Consensus 83 ~~~~~~~-----~~el~~~~gd~i~v~~~~~~~w~~g~-~~~~~G~~P~~~v~~ 130 (162)
.++..|+ ..+++..+++++.|+.... +||..+ -.|+.|.+|.|....
T Consensus 502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~R-~WW~~kn~~G~~GyvP~nIL~~ 554 (721)
T KOG3557|consen 502 WVLVLYDFQARNSSELSVKKGEVLEVLDDGR-KWWKVKNGHGRAGYVPSNILAP 554 (721)
T ss_pred eeeeehhhhcccchhhhhhhhhhhhhhhccc-cceeccCccCCCCCcchhhhcc
Confidence 4566676 6788888888887776633 566555 567778888776654
No 227
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=61.38 E-value=4.8 Score=23.00 Aligned_cols=32 Identities=16% Similarity=0.560 Sum_probs=14.9
Q ss_pred CccccccccccccCCC---EEcccCCccchhcHHH
Q psy9673 8 DLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEE 39 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p---~~~~C~H~fC~~Cl~~ 39 (162)
+.-.|.+|...|.--. -=-.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 3457999999885211 1115999999999753
No 228
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=61.32 E-value=2.2 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=20.1
Q ss_pred cccc--cccccccC------CCEEc-ccCCccchhcHHHH
Q psy9673 10 LECS--VCLDRLDT------SSKVL-PCQHTFCKKCLEEI 40 (162)
Q Consensus 10 l~C~--iC~~~~~~------~p~~~-~C~H~fC~~Cl~~~ 40 (162)
..|| -|...+.. ..+.- .|++.||..|...|
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 3477 67655531 13344 58999999998765
No 229
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=61.11 E-value=5.1 Score=21.79 Aligned_cols=40 Identities=23% Similarity=0.669 Sum_probs=19.1
Q ss_pred cccccccccCCC------EEc---ccCCccchhcHHHHHhcCCCccccccc
Q psy9673 12 CSVCLDRLDTSS------KVL---PCQHTFCKKCLEEIVSSHKELRCPECR 53 (162)
Q Consensus 12 C~iC~~~~~~~p------~~~---~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr 53 (162)
|--|+..|...+ ... .|++.||..|= .+.+..--.||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD--~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD--VFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH--HTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC--hhhhccccCCcCCC
Confidence 556777776321 122 48899999993 33333334788773
No 230
>KOG2231|consensus
Probab=59.43 E-value=6.3 Score=33.16 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=35.6
Q ss_pred ccccccccccCCCEEcccCC-ccchhcHHHHHhcCC----Cccccccccccc
Q psy9673 11 ECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHK----ELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~----~~~Cp~Cr~~~~ 57 (162)
.|+||-.-+. =+..-+||| ..|..|..+...... ...||+|+..+.
T Consensus 2 ~c~ic~~s~~-~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPD-FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcc-ccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5899988877 667778999 999999987755332 457899999664
No 231
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=59.41 E-value=1.4 Score=21.27 Aligned_cols=25 Identities=32% Similarity=0.765 Sum_probs=10.9
Q ss_pred CccchhcHHHHHhcC--CCcccccccc
Q psy9673 30 HTFCKKCLEEIVSSH--KELRCPECRV 54 (162)
Q Consensus 30 H~fC~~Cl~~~~~~~--~~~~Cp~Cr~ 54 (162)
|.||..|-.+..... ....||.|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 667777765433321 2246777754
No 232
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=59.15 E-value=3.2 Score=33.64 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=30.2
Q ss_pred CCCccccccccccccCCCEEcccCCccchhcHHHHHhc----------CCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSS----------HKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~----------~~~~~Cp~Cr~~~~ 57 (162)
|.+.+.|..|..+-...-+.-.=-.-||..|+...-.. +.=+.||.|..++.
T Consensus 2 l~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred cccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 45677888888766422111122235888888654221 01268999988775
No 233
>PF14353 CpXC: CpXC protein
Probab=58.65 E-value=7.7 Score=25.21 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=9.6
Q ss_pred Cccccccccccc
Q psy9673 46 ELRCPECRVLVE 57 (162)
Q Consensus 46 ~~~Cp~Cr~~~~ 57 (162)
.++||.|+..+.
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 468999999764
No 234
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=58.08 E-value=8.7 Score=19.51 Aligned_cols=24 Identities=21% Similarity=0.667 Sum_probs=14.0
Q ss_pred cccccccccCCCEEcc-cCCccchh
Q psy9673 12 CSVCLDRLDTSSKVLP-CQHTFCKK 35 (162)
Q Consensus 12 C~iC~~~~~~~p~~~~-C~H~fC~~ 35 (162)
|.+|.....-.|..-. |+..||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 4556655442255555 77888763
No 235
>KOG0197|consensus
Probab=57.27 E-value=1.7 Score=34.82 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=29.9
Q ss_pred ecCCCCce-eeeeEEecCCeEEEEE--CCeEEeecCCCeEeccCCCC
Q psy9673 116 VNGTTGAF-PMSYVQIDNNWFYGEV--NGTTGAFPMSYVQFVWYLPI 159 (162)
Q Consensus 116 ~~~~~G~~-P~~~v~~~~~w~~g~~--~g~~g~~p~~~~~~~~~~~~ 159 (162)
+.-..|.. ...--..+..||..+. .|+.|++|+|||....+.+.
T Consensus 28 Lsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~ 74 (468)
T KOG0197|consen 28 LSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPA 74 (468)
T ss_pred cccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCC
Confidence 33444554 3333334689999888 49999999999998754443
No 236
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=56.94 E-value=8.9 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=13.1
Q ss_pred cccccccccCCCEE-cccCCccchhcH
Q psy9673 12 CSVCLDRLDTSSKV-LPCQHTFCKKCL 37 (162)
Q Consensus 12 C~iC~~~~~~~p~~-~~C~H~fC~~Cl 37 (162)
|+.|.+.+.....+ ..-+..|+..|+
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf 27 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF 27 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc
Confidence 45555555533333 244555555555
No 237
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=56.90 E-value=6.7 Score=21.32 Aligned_cols=32 Identities=22% Similarity=0.552 Sum_probs=21.4
Q ss_pred cccccccccccC---CCEEcccCCccchhcHHHHH
Q psy9673 10 LECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIV 41 (162)
Q Consensus 10 l~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~ 41 (162)
..|.+|...|.. ..--..||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 357888776641 22333699999999986543
No 238
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=56.51 E-value=2.2 Score=19.52 Aligned_cols=7 Identities=43% Similarity=1.303 Sum_probs=3.5
Q ss_pred ccccccc
Q psy9673 48 RCPECRV 54 (162)
Q Consensus 48 ~Cp~Cr~ 54 (162)
.||.|++
T Consensus 18 fC~~CG~ 24 (26)
T PF13248_consen 18 FCPNCGA 24 (26)
T ss_pred cChhhCC
Confidence 4555544
No 239
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=56.34 E-value=9.6 Score=18.41 Aligned_cols=36 Identities=14% Similarity=0.498 Sum_probs=20.6
Q ss_pred ccccccccccCC-CEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 11 ECSVCLDRLDTS-SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 11 ~C~iC~~~~~~~-p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
.|..|.+.+... ..+..=+..|+..|+ .|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf----------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECF----------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCC----------CCcccCCcC
Confidence 377788777632 333334556666553 466676554
No 240
>PF12773 DZR: Double zinc ribbon
Probab=55.93 E-value=7.4 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.619 Sum_probs=16.3
Q ss_pred ccchhcHHHHHh-cCCCccccccccccc
Q psy9673 31 TFCKKCLEEIVS-SHKELRCPECRVLVE 57 (162)
Q Consensus 31 ~fC~~Cl~~~~~-~~~~~~Cp~Cr~~~~ 57 (162)
.||..|-..... ......||.|+..+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 477777655441 223457888887654
No 241
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=55.77 E-value=7 Score=23.99 Aligned_cols=36 Identities=17% Similarity=0.597 Sum_probs=25.0
Q ss_pred cccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-.|-+|...+. + =||.||..|-.. .+ .|.+|++.+.
T Consensus 45 ~~C~~CK~~v~-q-----~g~~YCq~CAYk----kG--iCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVH-Q-----PGAKYCQTCAYK----KG--ICAMCGKKIL 80 (90)
T ss_pred ccccccccccc-c-----CCCccChhhhcc----cC--cccccCCeec
Confidence 36777776665 2 267899999532 24 7999999763
No 243
>KOG0824|consensus
Probab=55.77 E-value=4.9 Score=30.29 Aligned_cols=49 Identities=27% Similarity=0.710 Sum_probs=35.9
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.+.-.|-+|...+.-+...-.|.|.||.-|...+..... .|+.|+.-..
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~--~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGN--DCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhh--ccchhhcCcC
Confidence 345568889988874445556999999999988877554 6888877443
No 244
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.82 E-value=4.8 Score=21.93 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=5.6
Q ss_pred cccccccccc
Q psy9673 48 RCPECRVLVE 57 (162)
Q Consensus 48 ~Cp~Cr~~~~ 57 (162)
.||+|+.++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999999886
No 245
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=53.62 E-value=8.3 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=16.9
Q ss_pred ccccccccccccCC--CEEcccCCcc
Q psy9673 9 LLECSVCLDRLDTS--SKVLPCQHTF 32 (162)
Q Consensus 9 ~l~C~iC~~~~~~~--p~~~~C~H~f 32 (162)
.+.||+|..-+... ....+.+|+|
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCC
Confidence 37899999999533 3444566887
No 246
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.31 E-value=10 Score=24.31 Aligned_cols=41 Identities=22% Similarity=0.530 Sum_probs=24.0
Q ss_pred ccccccccccCCCE-------------EcccCCccchhcHHHHHhcCCCccccccc
Q psy9673 11 ECSVCLDRLDTSSK-------------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53 (162)
Q Consensus 11 ~C~iC~~~~~~~p~-------------~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr 53 (162)
.|--|+..|...+. -..|.+.||..|=. +....--.||-|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~--fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDV--FVHESLHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccch--hhhhhccCCcCCC
Confidence 48888887763322 23588888888843 2211222588774
No 247
>KOG3799|consensus
Probab=53.30 E-value=7.4 Score=25.71 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=18.3
Q ss_pred CCccccccccccccCCCEEcccCCccchhcHHH
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEE 39 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~ 39 (162)
.++..|.||...-..+ .||| .|.+|-.+
T Consensus 63 ~ddatC~IC~KTKFAD----G~GH-~C~YCq~r 90 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD----GCGH-NCSYCQTR 90 (169)
T ss_pred CcCcchhhhhhccccc----ccCc-ccchhhhh
Confidence 5678899999765523 3777 45555444
No 248
>KOG2066|consensus
Probab=52.83 E-value=6.1 Score=33.73 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=26.6
Q ss_pred cccccccccccc------CCCEEcccCCccchhcHHHHHhc
Q psy9673 9 LLECSVCLDRLD------TSSKVLPCQHTFCKKCLEEIVSS 43 (162)
Q Consensus 9 ~l~C~iC~~~~~------~~p~~~~C~H~fC~~Cl~~~~~~ 43 (162)
+-.|..|.+... ...+++.|||.|+..|+....-+
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~ 824 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR 824 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh
Confidence 346888887775 35678899999999999765543
No 249
>KOG2068|consensus
Probab=52.70 E-value=8.9 Score=29.31 Aligned_cols=46 Identities=35% Similarity=0.781 Sum_probs=32.7
Q ss_pred ccccccccccc-CC--CEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLD-TS--SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~-~~--p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
-.|++|.+... ++ ..-.+|++..|..|+.......+ .||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~--~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDG--RCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCC--CCCccCCccc
Confidence 47999998772 22 22245788888888877666544 8999998765
No 250
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.18 E-value=8.1 Score=32.72 Aligned_cols=49 Identities=24% Similarity=0.630 Sum_probs=34.1
Q ss_pred CccccccccccccCC-------C--EEcccCCcc--------------------chhcHHHHHh------cCCCcccccc
Q psy9673 8 DLLECSVCLDRLDTS-------S--KVLPCQHTF--------------------CKKCLEEIVS------SHKELRCPEC 52 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~-------p--~~~~C~H~f--------------------C~~Cl~~~~~------~~~~~~Cp~C 52 (162)
+.-.|.-|++.+.++ | .-+.||..| |..|.+++.. +.+...||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 455799999888632 2 223588777 9999887654 2345799999
Q ss_pred cccc
Q psy9673 53 RVLV 56 (162)
Q Consensus 53 r~~~ 56 (162)
+-.+
T Consensus 180 GP~~ 183 (750)
T COG0068 180 GPHL 183 (750)
T ss_pred CCCe
Confidence 8855
No 251
>KOG2462|consensus
Probab=51.90 E-value=8.7 Score=28.60 Aligned_cols=51 Identities=22% Similarity=0.558 Sum_probs=35.1
Q ss_pred CCccccccccccccCC--------CEEcccCCccchhcHH-HHHhcC--------CCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTS--------SKVLPCQHTFCKKCLE-EIVSSH--------KELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~--------p~~~~C~H~fC~~Cl~-~~~~~~--------~~~~Cp~Cr~~~~ 57 (162)
...+.|.+|-..|..- .=.++|.+.+|.+-.. .|+-++ +.+.||.|++.|.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFA 226 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFA 226 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhc
Confidence 3456788888887521 2235888888888876 555432 2489999999886
No 252
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=51.80 E-value=2.3 Score=31.91 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=20.4
Q ss_pred CccccccccccccCCCEEcc-----cCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLP-----CQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~-----C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
+.-.||||...-. -..+.. -.+.+|..|-.+|.-... .||.|...-
T Consensus 171 ~~g~CPvCGs~P~-~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~--~Cp~Cg~~~ 221 (290)
T PF04216_consen 171 QRGYCPVCGSPPV-LSVLRGGEREGKRYLHCSLCGTEWRFVRI--KCPYCGNTD 221 (290)
T ss_dssp T-SS-TTT---EE-EEEEE------EEEEEETTT--EEE--TT--S-TTT---S
T ss_pred cCCcCCCCCCcCc-eEEEecCCCCccEEEEcCCCCCeeeecCC--CCcCCCCCC
Confidence 3468999997653 212222 246679999988865433 799997753
No 253
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=51.60 E-value=40 Score=18.54 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=21.5
Q ss_pred ceeeccCCCEEEEeEecC-CCeEEEEecCCCCceee
Q psy9673 91 LDLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPM 125 (162)
Q Consensus 91 ~el~~~~gd~i~v~~~~~-~~w~~g~~~~~~G~~P~ 125 (162)
++-.+..|.-+.|+.... ..|...+...-.||+++
T Consensus 19 Q~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 19 QNSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hhcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 345577888777776654 47988888877888764
No 254
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=51.59 E-value=5 Score=18.88 Aligned_cols=25 Identities=16% Similarity=0.624 Sum_probs=10.1
Q ss_pred ccccccccccCCCEEcccCCccchhc
Q psy9673 11 ECSVCLDRLDTSSKVLPCQHTFCKKC 36 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H~fC~~C 36 (162)
.|+.|...+. +.....=...||..|
T Consensus 3 ~C~rC~~~~~-~~~~~~r~~~~C~rC 27 (30)
T PF06827_consen 3 KCPRCWNYIE-DIGINGRSTYLCPRC 27 (30)
T ss_dssp B-TTT--BBE-EEEETTEEEEE-TTT
T ss_pred cCccCCCcce-EeEecCCCCeECcCC
Confidence 4677777765 433333333455555
No 255
>KOG2979|consensus
Probab=50.83 E-value=7.9 Score=28.53 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=34.2
Q ss_pred ccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
.+.||+=...+.++.+...|||.|=..-+...+.-.....||+-+.+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 45688754455536666789999988888887775456789987765
No 256
>KOG0309|consensus
Probab=50.71 E-value=9.2 Score=32.71 Aligned_cols=40 Identities=23% Similarity=0.521 Sum_probs=27.1
Q ss_pred cccccccccccC-CCEEcccCCccchhcHHHHHhcCCCccccc
Q psy9673 10 LECSVCLDRLDT-SSKVLPCQHTFCKKCLEEIVSSHKELRCPE 51 (162)
Q Consensus 10 l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~ 51 (162)
+.|.+|--.... .-+-..|+|..+..|...|+..+. .||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd--~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD--VCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC--cCCC
Confidence 456666533321 123335999999999999999766 6774
No 257
>KOG3565|consensus
Probab=49.42 E-value=4.7 Score=33.86 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=23.4
Q ss_pred cCCeEEEE--ECCeEEeecCCCeEeccC
Q psy9673 131 DNNWFYGE--VNGTTGAFPMSYVQFVWY 156 (162)
Q Consensus 131 ~~~w~~g~--~~g~~g~~p~~~~~~~~~ 156 (162)
+++|-+++ .+|..|.||.+|++..+.
T Consensus 611 g~gwt~~r~~~~~~~g~~Ptsyl~~~~~ 638 (640)
T KOG3565|consen 611 GDGWTRGRLEPNGEKGYVPTSYLDVTET 638 (640)
T ss_pred cCCCCCCCCCCCCcCCCCCccccccccc
Confidence 78999999 789999999999998764
No 258
>KOG2113|consensus
Probab=49.10 E-value=11 Score=28.73 Aligned_cols=44 Identities=11% Similarity=-0.158 Sum_probs=32.1
Q ss_pred CCccccccccccccCCCEEcccCC-ccchhcHHHHHhcCCCccccccccc
Q psy9673 7 NDLLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~p~~~~C~H-~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
-..+.|.+|.+-+. .....+|+| .||.+|.. +. -..+||+|...
T Consensus 341 ~s~~~~~~~~~~~~-st~~~~~~~n~~~~~~a~--~s--~~~~~~~c~~~ 385 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLL-STIWSGGNMNLSPGSLAS--AS--ASPTSSTCDHN 385 (394)
T ss_pred hhhcccccccCcee-eeEeecCCcccChhhhhh--cc--cCCcccccccc
Confidence 34678999988877 557788998 68988876 22 22489999653
No 259
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=48.93 E-value=4.6 Score=20.20 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=7.2
Q ss_pred ccccccccccc
Q psy9673 10 LECSVCLDRLD 20 (162)
Q Consensus 10 l~C~iC~~~~~ 20 (162)
..||-|...|.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 45777776665
No 260
>KOG3842|consensus
Probab=48.81 E-value=19 Score=27.57 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=29.5
Q ss_pred CccccccccccccC----------------CC--EEcccCCccchhcHHHHHhcC----C----Cccccccccccc
Q psy9673 8 DLLECSVCLDRLDT----------------SS--KVLPCQHTFCKKCLEEIVSSH----K----ELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~----------------~p--~~~~C~H~fC~~Cl~~~~~~~----~----~~~Cp~Cr~~~~ 57 (162)
.+.+||+|+.+-.- +| .-.|||| .|.+=...++.+. + ...||.|...+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 46789999865320 11 1237999 5555555555531 1 258999988765
No 261
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.65 E-value=7.5 Score=23.79 Aligned_cols=13 Identities=31% Similarity=0.887 Sum_probs=11.5
Q ss_pred ccchhcHHHHHhc
Q psy9673 31 TFCKKCLEEIVSS 43 (162)
Q Consensus 31 ~fC~~Cl~~~~~~ 43 (162)
.||..|+..|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999874
No 262
>KOG3705|consensus
Probab=48.58 E-value=19 Score=28.54 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=25.7
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEE--ecCCCCceeeeeEE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~--~~~~~G~~P~~~v~ 129 (162)
+.++.++.||.+-|...-=++...|. ..++.|+||+.=|+
T Consensus 523 ~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvr 564 (580)
T KOG3705|consen 523 NKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVR 564 (580)
T ss_pred ccccCcccCCeeeecccccccccccccccccccCCCccceee
Confidence 77888999999977554333434443 24567888875443
No 263
>KOG3053|consensus
Probab=47.21 E-value=8.8 Score=28.33 Aligned_cols=51 Identities=20% Similarity=0.504 Sum_probs=36.1
Q ss_pred CCccccccccccccCC---CEEcccCC-----ccchhcHHHHHhcC------CCccccccccccc
Q psy9673 7 NDLLECSVCLDRLDTS---SKVLPCQH-----TFCKKCLEEIVSSH------KELRCPECRVLVE 57 (162)
Q Consensus 7 ~~~l~C~iC~~~~~~~---p~~~~C~H-----~fC~~Cl~~~~~~~------~~~~Cp~Cr~~~~ 57 (162)
+.+..|=||+..=++. ..+-||.+ =.+..|+.+|..++ +...||.|+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4567899999887643 23446653 34789999998743 2368999999764
No 264
>KOG1244|consensus
Probab=47.16 E-value=5 Score=29.85 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=31.4
Q ss_pred ccccccccccCCCEEc---ccCCccchhcHHHHHhc--CCCccccccccccc
Q psy9673 11 ECSVCLDRLDTSSKVL---PCQHTFCKKCLEEIVSS--HKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~---~C~H~fC~~Cl~~~~~~--~~~~~Cp~Cr~~~~ 57 (162)
.|+||.-.=. +-.++ .|...|+++||..-+.. .++++|.+|-..+.
T Consensus 283 ~csicgtsen-ddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 283 YCSICGTSEN-DDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred eeccccCcCC-CceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 4677775444 32333 47788899999887764 46789999966553
No 265
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=47.06 E-value=3.8 Score=22.72 Aligned_cols=31 Identities=32% Similarity=0.606 Sum_probs=17.7
Q ss_pred ccccc--ccccccCC----C--EEcc-cCCccchhcHHHH
Q psy9673 10 LECSV--CLDRLDTS----S--KVLP-CQHTFCKKCLEEI 40 (162)
Q Consensus 10 l~C~i--C~~~~~~~----p--~~~~-C~H~fC~~Cl~~~ 40 (162)
..||- |...+... . ++-+ |++.||..|...|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47877 88888421 2 4445 9999999997654
No 266
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=46.61 E-value=12 Score=19.33 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=11.1
Q ss_pred ccccccCCCEEcc-cCCccchhcH
Q psy9673 15 CLDRLDTSSKVLP-CQHTFCKKCL 37 (162)
Q Consensus 15 C~~~~~~~p~~~~-C~H~fC~~Cl 37 (162)
|..... -|..-+ |+..||..-.
T Consensus 6 C~~~~~-~~~~C~~C~~~FC~~Hr 28 (43)
T PF01428_consen 6 CKKKDF-LPFKCKHCGKSFCLKHR 28 (43)
T ss_dssp T--BCT-SHEE-TTTS-EE-TTTH
T ss_pred CcCccC-CCeECCCCCcccCcccc
Confidence 666655 455565 8888887654
No 267
>KOG1074|consensus
Probab=46.20 E-value=16 Score=31.70 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=11.5
Q ss_pred CCCcccccccccccc
Q psy9673 6 LNDLLECSVCLDRLD 20 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~ 20 (162)
..+-.+|-||+++++
T Consensus 602 ~TdPNqCiiC~rVlS 616 (958)
T KOG1074|consen 602 RTDPNQCIICLRVLS 616 (958)
T ss_pred cCCccceeeeeeccc
Confidence 345678999998887
No 268
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.99 E-value=11 Score=27.40 Aligned_cols=23 Identities=26% Similarity=0.742 Sum_probs=17.2
Q ss_pred chhcHHHHHhcCCCccccccccccc
Q psy9673 33 CKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 33 C~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
|.+|....-.+. ..||+|++-..
T Consensus 197 C~sC~qqIHRNA--PiCPlCK~KsR 219 (230)
T PF10146_consen 197 CQSCHQQIHRNA--PICPLCKAKSR 219 (230)
T ss_pred hHhHHHHHhcCC--CCCcccccccc
Confidence 888987765544 59999988654
No 269
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.93 E-value=9.2 Score=25.95 Aligned_cols=23 Identities=30% Similarity=0.969 Sum_probs=18.6
Q ss_pred CccchhcHHHHHhcCCCccccccccccc
Q psy9673 30 HTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 30 H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+.||..|-.+... .||-|..++.
T Consensus 28 ~~fC~kCG~~tI~-----~Cp~C~~~Ir 50 (158)
T PF10083_consen 28 EKFCSKCGAKTIT-----SCPNCSTPIR 50 (158)
T ss_pred HHHHHHhhHHHHH-----HCcCCCCCCC
Confidence 5699999887766 6999988875
No 270
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=45.64 E-value=15 Score=24.03 Aligned_cols=13 Identities=8% Similarity=-0.033 Sum_probs=9.2
Q ss_pred CCccccccccccc
Q psy9673 45 KELRCPECRVLVE 57 (162)
Q Consensus 45 ~~~~Cp~Cr~~~~ 57 (162)
..+.||.|+..+.
T Consensus 25 ~p~vcP~cg~~~~ 37 (129)
T TIGR02300 25 RPAVSPYTGEQFP 37 (129)
T ss_pred CCccCCCcCCccC
Confidence 4567888887664
No 271
>KOG3896|consensus
Probab=45.44 E-value=5.8 Score=30.46 Aligned_cols=52 Identities=27% Similarity=0.601 Sum_probs=31.5
Q ss_pred CCCccccccccccccCCCEEcccCCccchhcHHHHHh-------c--CCCccccccccccc
Q psy9673 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS-------S--HKELRCPECRVLVE 57 (162)
Q Consensus 6 ~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~-------~--~~~~~Cp~Cr~~~~ 57 (162)
+.+.+.|--|.++-...-++-.-...||.+|+...-. + .+-+.||.|...++
T Consensus 21 l~~L~FCRyC~klrc~~Cv~hEvdshfCp~CLEn~ps~EArlKKn~CAnCfDCP~C~htLS 81 (449)
T KOG3896|consen 21 LPDLVFCRYCFKLRCDDCVLHEVDSHFCPRCLENSPSPEARLKKNKCANCFDCPKCAHTLS 81 (449)
T ss_pred ccceeeeecccccccccccccccccccchhhccCCCchHHHhhhccccccccCcchhhhhh
Confidence 4566678777766653322223334599999865322 1 11268999988775
No 272
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=45.07 E-value=8.5 Score=28.81 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=21.9
Q ss_pred cCCccchhcHHHHHhcCC--Cccccccccccc
Q psy9673 28 CQHTFCKKCLEEIVSSHK--ELRCPECRVLVE 57 (162)
Q Consensus 28 C~H~fC~~Cl~~~~~~~~--~~~Cp~Cr~~~~ 57 (162)
=.|.||..|-.+.....+ ...||.|+..+-
T Consensus 109 ~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~f 140 (279)
T COG2816 109 RSHRFCGRCGTKTYPREGGWARVCPKCGHEHF 140 (279)
T ss_pred hhCcCCCCCCCcCccccCceeeeCCCCCCccC
Confidence 468999999887655432 358999998653
No 273
>KOG0827|consensus
Probab=44.26 E-value=2 Score=33.46 Aligned_cols=45 Identities=20% Similarity=0.544 Sum_probs=35.4
Q ss_pred ccccccccccC---CCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 11 ECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 11 ~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
+|+||.+.|.. .-..+-|||.+...||..|+.... .||.|+..+.
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~--kl~~~~rel~ 245 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR--KLPSCRRELP 245 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH--HhHHHHhhhh
Confidence 58898888852 234457999999999999998754 7999988764
No 274
>KOG3557|consensus
Probab=44.17 E-value=7.5 Score=32.44 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=23.8
Q ss_pred cCCeEEEEE-CCeEEeecCCCeEeccCCCC
Q psy9673 131 DNNWFYGEV-NGTTGAFPMSYVQFVWYLPI 159 (162)
Q Consensus 131 ~~~w~~g~~-~g~~g~~p~~~~~~~~~~~~ 159 (162)
.-.||+.+. .|+.|++|.|-+..+.+.-+
T Consensus 531 ~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~ 560 (721)
T KOG3557|consen 531 GRKWWKVKNGHGRAGYVPSNILAPLQPEHT 560 (721)
T ss_pred cccceeccCccCCCCCcchhhhccCCCccc
Confidence 338999998 59999999999988866543
No 275
>KOG0314|consensus
Probab=43.08 E-value=7.8 Score=31.01 Aligned_cols=48 Identities=25% Similarity=0.607 Sum_probs=34.9
Q ss_pred cCCCccccccc-cccccCCCEEc--ccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 5 TLNDLLECSVC-LDRLDTSSKVL--PCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 5 ~~~~~l~C~iC-~~~~~~~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
.+.+.+.|++| .+.+. +..++ .|..+||..|+...+... .++.|.+.-
T Consensus 215 ~~~e~~~c~~~~~~~~~-~~~l~~~~~~~~~~~~~i~~~l~~~---~~~~c~~~~ 265 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVML-DAALLSKCCLKSFCDKCIRDALISK---SMCVCGASN 265 (448)
T ss_pred cCCccccCceecchhhH-HHHHhhhhhcccCCccccccccccc---cCCcchhhc
Confidence 35678899999 66665 43444 488999999999877765 467776644
No 276
>PF15616 TerY-C: TerY-C metal binding domain
Probab=43.00 E-value=15 Score=24.23 Aligned_cols=45 Identities=24% Similarity=0.427 Sum_probs=30.9
Q ss_pred ccCCCccccccccccccCCCEEcccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 4 WTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 4 ~~~~~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
++|...-.||-|...+- -++..||+.||..= ....+||-|.....
T Consensus 72 seL~g~PgCP~CGn~~~--fa~C~CGkl~Ci~g-------~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 72 SELIGAPGCPHCGNQYA--FAVCGCGKLFCIDG-------EGEVTCPWCGNEGS 116 (131)
T ss_pred HHhcCCCCCCCCcChhc--EEEecCCCEEEeCC-------CCCEECCCCCCeee
Confidence 34455578999987753 24558999998432 23468999998654
No 277
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=42.14 E-value=11 Score=17.18 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=3.9
Q ss_pred cccccccc
Q psy9673 49 CPECRVLV 56 (162)
Q Consensus 49 Cp~Cr~~~ 56 (162)
||+|.+.+
T Consensus 4 CPiC~~~v 11 (26)
T smart00734 4 CPVCFREV 11 (26)
T ss_pred CCCCcCcc
Confidence 55554443
No 278
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=40.49 E-value=26 Score=19.66 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=6.9
Q ss_pred CCcccccccc
Q psy9673 45 KELRCPECRV 54 (162)
Q Consensus 45 ~~~~Cp~Cr~ 54 (162)
..+.||.|+.
T Consensus 47 ~~Y~CP~CGF 56 (59)
T PRK14890 47 NPYTCPKCGF 56 (59)
T ss_pred CceECCCCCC
Confidence 4568888864
No 279
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=39.14 E-value=16 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.564 Sum_probs=13.5
Q ss_pred ccccccccccCCCEEcccCCccchhcH
Q psy9673 11 ECSVCLDRLDTSSKVLPCQHTFCKKCL 37 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl 37 (162)
.|.-|..... +-.+|+|.+|..|-
T Consensus 44 ~C~~Cg~~~~---~~~SCk~R~CP~C~ 67 (111)
T PF14319_consen 44 RCEDCGHEKI---VYNSCKNRHCPSCQ 67 (111)
T ss_pred ecCCCCceEE---ecCcccCcCCCCCC
Confidence 4555554443 44567777776664
No 280
>KOG4384|consensus
Probab=38.77 E-value=15 Score=28.39 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=32.6
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEecCCCCceeeeeEEe
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~~~~~G~~P~~~v~~ 130 (162)
.+++....|++|.+..+..-+-|.|-++++.|.|+.-||..
T Consensus 152 ~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~ 192 (361)
T KOG4384|consen 152 TDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDV 192 (361)
T ss_pred ccchhhcccchhhccccCccccccccccCcccccccceecc
Confidence 66788888999988888777777777888888887777765
No 281
>KOG4451|consensus
Probab=38.10 E-value=22 Score=25.82 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=17.0
Q ss_pred chhcHHHHHhcCCCccccccccccc
Q psy9673 33 CKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 33 C~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
|.+|....-.+. ..||+|++-..
T Consensus 252 ClsChqqIHRNA--PiCPlCKaKsR 274 (286)
T KOG4451|consen 252 CLSCHQQIHRNA--PICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHhcCC--CCCcchhhccc
Confidence 788887765544 48999998654
No 282
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=38.09 E-value=16 Score=16.46 Aligned_cols=8 Identities=38% Similarity=0.953 Sum_probs=3.9
Q ss_pred cccccccc
Q psy9673 49 CPECRVLV 56 (162)
Q Consensus 49 Cp~Cr~~~ 56 (162)
||.|+..|
T Consensus 5 C~~CgR~F 12 (25)
T PF13913_consen 5 CPICGRKF 12 (25)
T ss_pred CCCCCCEE
Confidence 44554444
No 283
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.40 E-value=16 Score=23.85 Aligned_cols=22 Identities=36% Similarity=1.026 Sum_probs=16.3
Q ss_pred ccchhcHHHHHhcCCCccccccccccc
Q psy9673 31 TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 31 ~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.||..|-..... .||.|.+++.
T Consensus 29 afcskcgeati~-----qcp~csasir 50 (160)
T COG4306 29 AFCSKCGEATIT-----QCPICSASIR 50 (160)
T ss_pred HHHhhhchHHHh-----cCCccCCccc
Confidence 588888766554 5999988764
No 284
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.00 E-value=10 Score=28.86 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=28.5
Q ss_pred ccccccccccccCCCEEc----ccC--CccchhcHHHHHhcCCCccccccccc
Q psy9673 9 LLECSVCLDRLDTSSKVL----PCQ--HTFCKKCLEEIVSSHKELRCPECRVL 55 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~----~C~--H~fC~~Cl~~~~~~~~~~~Cp~Cr~~ 55 (162)
.-.||||...-. -.++. .=| +.+|..|-.+|--..- .||.|...
T Consensus 184 ~~~CPvCGs~P~-~s~~~~~~~~~G~RyL~CslC~teW~~~R~--~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPV-ASMVRQGGKETGLRYLSCSLCATEWHYVRV--KCSHCEES 233 (305)
T ss_pred CCcCCCCCChhh-hhhhcccCCCCCceEEEcCCCCCcccccCc--cCCCCCCC
Confidence 448999997653 11111 123 5678899888866443 79999763
No 285
>KOG0040|consensus
Probab=36.94 E-value=5.3 Score=36.82 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.4
Q ss_pred cCCeEEEEECCeEEeecCCCeEeccCC
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQFVWYL 157 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~~~~~ 157 (162)
+-.||..+.+.+.|++|+.||+.+.+-
T Consensus 1000 nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 1000 NKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred ccccccchhhhhcCcchHHHHHHhccC
Confidence 569999999999999999999988654
No 286
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=36.86 E-value=13 Score=25.15 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=16.9
Q ss_pred cchhcHHHHHhc--CCCcccccccccc
Q psy9673 32 FCKKCLEEIVSS--HKELRCPECRVLV 56 (162)
Q Consensus 32 fC~~Cl~~~~~~--~~~~~Cp~Cr~~~ 56 (162)
|+..||.+-+.. .+.+.||.|...-
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 567777766654 2457899998643
No 287
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.79 E-value=11 Score=20.21 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=9.3
Q ss_pred ccccccccccc
Q psy9673 47 LRCPECRVLVE 57 (162)
Q Consensus 47 ~~Cp~Cr~~~~ 57 (162)
+.||+|+.+|.
T Consensus 13 KICpvCqRPFs 23 (54)
T COG4338 13 KICPVCQRPFS 23 (54)
T ss_pred hhhhhhcCchH
Confidence 58999999885
No 288
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.58 E-value=17 Score=18.86 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=9.7
Q ss_pred Cccccccccccc
Q psy9673 46 ELRCPECRVLVE 57 (162)
Q Consensus 46 ~~~Cp~Cr~~~~ 57 (162)
+..|++|..+|+
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 358999999885
No 289
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=35.04 E-value=24 Score=19.43 Aligned_cols=10 Identities=20% Similarity=0.856 Sum_probs=6.7
Q ss_pred cccccccccc
Q psy9673 10 LECSVCLDRL 19 (162)
Q Consensus 10 l~C~iC~~~~ 19 (162)
+.||+|..--
T Consensus 5 i~CP~CgnKT 14 (55)
T PF14205_consen 5 ILCPICGNKT 14 (55)
T ss_pred EECCCCCCcc
Confidence 4688887544
No 290
>KOG4443|consensus
Probab=34.51 E-value=22 Score=29.94 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=36.6
Q ss_pred cCCCccccccccccccCCCE----EcccCCccchhcHHHHHhcC---CCccccccccccc
Q psy9673 5 TLNDLLECSVCLDRLDTSSK----VLPCQHTFCKKCLEEIVSSH---KELRCPECRVLVE 57 (162)
Q Consensus 5 ~~~~~l~C~iC~~~~~~~p~----~~~C~H~fC~~Cl~~~~~~~---~~~~Cp~Cr~~~~ 57 (162)
.+...+.|++|...=...+. .-.|+-.++..|+..|+++. +.+.||-|+...-
T Consensus 14 ~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~ 73 (694)
T KOG4443|consen 14 AIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEA 73 (694)
T ss_pred hhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeee
Confidence 34556778888866653332 23588889999999887642 4478999988653
No 291
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=34.16 E-value=22 Score=25.99 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=30.0
Q ss_pred cccccc-ccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccc
Q psy9673 9 LLECSV-CLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 9 ~l~C~i-C~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
+++||| |+-++- +.....|.|.|=+.-|...++-.-+..||.-..
T Consensus 189 ~nrCpitl~p~~~-pils~kcnh~~e~D~I~~~lq~~~trvcp~~~C 234 (275)
T COG5627 189 SNRCPITLNPDFY-PILSSKCNHKPEMDLINKKLQVECTRVCPRLIC 234 (275)
T ss_pred cccCCcccCcchh-HHHHhhhcccccHHHHHHHhcCCceeecchhhc
Confidence 467998 555554 545567999998888887776433446776443
No 292
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=34.13 E-value=18 Score=17.92 Aligned_cols=24 Identities=25% Similarity=0.681 Sum_probs=11.0
Q ss_pred chhcHHHHHhc------CCCcccccccccc
Q psy9673 33 CKKCLEEIVSS------HKELRCPECRVLV 56 (162)
Q Consensus 33 C~~Cl~~~~~~------~~~~~Cp~Cr~~~ 56 (162)
|..|+.++... .+...|+.|+-.+
T Consensus 2 C~~C~~Ey~~p~~RR~~~~~isC~~CGPr~ 31 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFHYQFISCTNCGPRY 31 (35)
T ss_dssp -HHHHHHHCSTTSTTTT-TT--BTTCC-SC
T ss_pred CHHHHHHHcCCCCCcccCcCccCCCCCCCE
Confidence 56666665431 1235788886544
No 293
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.05 E-value=8.4 Score=18.89 Aligned_cols=8 Identities=38% Similarity=1.140 Sum_probs=6.5
Q ss_pred cccccccc
Q psy9673 48 RCPECRVL 55 (162)
Q Consensus 48 ~Cp~Cr~~ 55 (162)
.||+|+++
T Consensus 20 ~CP~Cg~~ 27 (34)
T cd00729 20 KCPICGAP 27 (34)
T ss_pred cCcCCCCc
Confidence 79999875
No 294
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=33.77 E-value=14 Score=21.73 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=5.4
Q ss_pred cccccccccccc
Q psy9673 9 LLECSVCLDRLD 20 (162)
Q Consensus 9 ~l~C~iC~~~~~ 20 (162)
.|.|-.|..+..
T Consensus 9 vlrC~aCf~~t~ 20 (73)
T PF08772_consen 9 VLRCHACFKITK 20 (73)
T ss_dssp EEE-SSS--EES
T ss_pred eEEccccccCcC
Confidence 356666766665
No 295
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=33.31 E-value=39 Score=20.72 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=10.6
Q ss_pred HHHhcCCCccccccccccc
Q psy9673 39 EIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 39 ~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.|+-.++ .|..|++.++
T Consensus 53 S~l~lrG--rCr~C~~~I~ 69 (92)
T PF06750_consen 53 SYLLLRG--RCRYCGAPIP 69 (92)
T ss_pred HHHHhCC--CCcccCCCCC
Confidence 3444455 7888877654
No 296
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=33.30 E-value=14 Score=29.06 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred EEcccCCccchhcHHHHHhc-CCCcccccccccc
Q psy9673 24 KVLPCQHTFCKKCLEEIVSS-HKELRCPECRVLV 56 (162)
Q Consensus 24 ~~~~C~H~fC~~Cl~~~~~~-~~~~~Cp~Cr~~~ 56 (162)
+.+.|||.+-..=+-..... .....||+|+..-
T Consensus 305 VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 305 VYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ----------------------------------
T ss_pred eeccccceeeecccccccccccccccCCCccccC
Confidence 45679998865433211111 1245899998853
No 297
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=33.02 E-value=15 Score=15.61 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=7.5
Q ss_pred cccccccccc
Q psy9673 48 RCPECRVLVE 57 (162)
Q Consensus 48 ~Cp~Cr~~~~ 57 (162)
.|+.|...+.
T Consensus 2 ~C~~C~~~f~ 11 (23)
T PF00096_consen 2 KCPICGKSFS 11 (23)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCccC
Confidence 5888887765
No 298
>KOG1609|consensus
Probab=32.98 E-value=36 Score=25.55 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=36.3
Q ss_pred cccccccccccCC---CEEcccCC-----ccchhcHHHHHhcCCCccccccccccc
Q psy9673 10 LECSVCLDRLDTS---SKVLPCQH-----TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~~~---p~~~~C~H-----~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
..|-||....... +...+|.. ..+..|+..|...++...|.+|.....
T Consensus 79 ~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 79 PICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5689999866411 46677664 347899999999878889999988664
No 299
>KOG1829|consensus
Probab=32.97 E-value=13 Score=30.91 Aligned_cols=23 Identities=43% Similarity=0.954 Sum_probs=17.5
Q ss_pred ccCCccchhcHHHHHhcCCCcccccccc
Q psy9673 27 PCQHTFCKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
.|++.|+..|+.+ ....||.|-.
T Consensus 536 ~C~avfH~~C~~r-----~s~~CPrC~R 558 (580)
T KOG1829|consen 536 TCLAVFHKKCLRR-----KSPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHhc-----cCCCCCchHH
Confidence 4999999999876 2234999965
No 300
>PRK04023 DNA polymerase II large subunit; Validated
Probab=32.95 E-value=28 Score=30.97 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=29.2
Q ss_pred CccccccccccccCCCEEcccCC-----ccchhcHHHHHhcCCCccccccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQH-----TFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H-----~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
....|+-|..... ...--.||. .||..|-.. . ....||-|.....
T Consensus 625 g~RfCpsCG~~t~-~frCP~CG~~Te~i~fCP~CG~~--~--~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETF-YRRCPFCGTHTEPVYRCPRCGIE--V--EEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCC-cccCCCCCCCCCcceeCccccCc--C--CCCcCCCCCCCCC
Confidence 3457999988764 323234884 489999432 2 2347999999764
No 301
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=32.65 E-value=11 Score=24.94 Aligned_cols=22 Identities=32% Similarity=0.780 Sum_probs=14.3
Q ss_pred chhcHHHHHhcCCCcccccccc
Q psy9673 33 CKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 33 C~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
|..|-...+...+...||+|..
T Consensus 31 Cp~Cg~PLF~KdG~v~CPvC~~ 52 (131)
T COG1645 31 CPKCGTPLFRKDGEVFCPVCGY 52 (131)
T ss_pred CcccCCcceeeCCeEECCCCCc
Confidence 5556555555556677888874
No 302
>KOG0269|consensus
Probab=32.58 E-value=44 Score=28.76 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=30.2
Q ss_pred cccccccccccCCCEEc--ccCCccchhcHHHHHhcCCCccccc--cccc
Q psy9673 10 LECSVCLDRLDTSSKVL--PCQHTFCKKCLEEIVSSHKELRCPE--CRVL 55 (162)
Q Consensus 10 l~C~iC~~~~~~~p~~~--~C~H~fC~~Cl~~~~~~~~~~~Cp~--Cr~~ 55 (162)
-.|.+|...+. ....- -|||.-+..|+..|+.... .||. |...
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s--~ca~~~C~~~ 826 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKAS--PCAKSICPHL 826 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCC--CCccccCCcc
Confidence 36888887776 32222 3999999999999998654 5666 5553
No 303
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.15 E-value=26 Score=25.28 Aligned_cols=38 Identities=24% Similarity=0.567 Sum_probs=19.8
Q ss_pred ccccccccccCCCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
.|.+|...+. .. ....|..|...+..-. ..|+.|..+.
T Consensus 7 ~C~~C~~~~~-~~-----~~~lC~~C~~~l~~~~--~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLA-LS-----HWGICSVCSRALRTLK--TCCPQCGLPA 44 (227)
T ss_pred cCccCCCccC-CC-----CCcccHHHHhhCCccc--CcCccCCCcC
Confidence 5888887664 21 1235666665432111 2577776543
No 304
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=31.61 E-value=18 Score=19.74 Aligned_cols=13 Identities=23% Similarity=0.818 Sum_probs=6.5
Q ss_pred CCccccccccccc
Q psy9673 45 KELRCPECRVLVE 57 (162)
Q Consensus 45 ~~~~Cp~Cr~~~~ 57 (162)
+..+||+|.+.+.
T Consensus 23 ~PatCP~C~a~~~ 35 (54)
T PF09237_consen 23 QPATCPICGAVIR 35 (54)
T ss_dssp --EE-TTT--EES
T ss_pred CCCCCCcchhhcc
Confidence 3469999999775
No 305
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.51 E-value=16 Score=18.76 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=13.7
Q ss_pred ccCCccchhcHHHHHhcCCCcccccccc
Q psy9673 27 PCQHTFCKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
.|||.|=...- +.......||.|+.
T Consensus 10 ~Cg~~fe~~~~---~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQS---ISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEE---cCCCCCCcCCCCCC
Confidence 46666643221 12234468999988
No 306
>KOG1356|consensus
Probab=31.33 E-value=17 Score=31.43 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=23.8
Q ss_pred cccccccccccCCC-EEcccCCccchhcHHHHH
Q psy9673 10 LECSVCLDRLDTSS-KVLPCQHTFCKKCLEEIV 41 (162)
Q Consensus 10 l~C~iC~~~~~~~p-~~~~C~H~fC~~Cl~~~~ 41 (162)
-.|..|..-+.+.- +-..|++.+|..|+..|.
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 46888888776322 333599999999999884
No 307
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=30.70 E-value=18 Score=15.10 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=5.5
Q ss_pred cccccccccc
Q psy9673 48 RCPECRVLVE 57 (162)
Q Consensus 48 ~Cp~Cr~~~~ 57 (162)
.|+.|...+.
T Consensus 2 ~C~~C~~~~~ 11 (24)
T PF13894_consen 2 QCPICGKSFR 11 (24)
T ss_dssp E-SSTS-EES
T ss_pred CCcCCCCcCC
Confidence 5888877664
No 308
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.41 E-value=23 Score=27.10 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=29.1
Q ss_pred CccccccccccccCCCEE-c--ccC--CccchhcHHHHHhcCCCcccccccc
Q psy9673 8 DLLECSVCLDRLDTSSKV-L--PCQ--HTFCKKCLEEIVSSHKELRCPECRV 54 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~-~--~C~--H~fC~~Cl~~~~~~~~~~~Cp~Cr~ 54 (162)
..-.||||...-. -.++ . .=| +-+|..|-.+|--... .||.|..
T Consensus 186 ~~~~CPvCGs~P~-~s~v~~~~~~G~RyL~CslC~teW~~~R~--~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPV-SSVVQIGTTQGLRYLHCNLCESEWHVVRV--KCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcch-hheeeccCCCCceEEEcCCCCCcccccCc--cCCCCCC
Confidence 4568999997753 1111 1 223 4579999888866443 7999986
No 309
>PRK00420 hypothetical protein; Validated
Probab=29.97 E-value=16 Score=23.48 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=8.0
Q ss_pred CCccccccccccc
Q psy9673 45 KELRCPECRVLVE 57 (162)
Q Consensus 45 ~~~~Cp~Cr~~~~ 57 (162)
+...||.|+..+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 4456777777553
No 310
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=29.20 E-value=27 Score=18.87 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=9.0
Q ss_pred CCcccccccccc
Q psy9673 45 KELRCPECRVLV 56 (162)
Q Consensus 45 ~~~~Cp~Cr~~~ 56 (162)
..+.||+|++.-
T Consensus 33 ~~w~CP~C~a~K 44 (50)
T cd00730 33 DDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCCCCCcH
Confidence 357999998753
No 311
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=28.83 E-value=13 Score=23.83 Aligned_cols=9 Identities=44% Similarity=1.353 Sum_probs=6.7
Q ss_pred ccccccccc
Q psy9673 47 LRCPECRVL 55 (162)
Q Consensus 47 ~~Cp~Cr~~ 55 (162)
+.||.|+..
T Consensus 87 ~~CP~Cgs~ 95 (115)
T TIGR00100 87 YRCPKCHGI 95 (115)
T ss_pred ccCcCCcCC
Confidence 579999764
No 312
>PRK01343 zinc-binding protein; Provisional
Probab=28.16 E-value=28 Score=19.39 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.6
Q ss_pred Cccccccccccc
Q psy9673 46 ELRCPECRVLVE 57 (162)
Q Consensus 46 ~~~Cp~Cr~~~~ 57 (162)
...||+|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 458999999764
No 313
>KOG3771|consensus
Probab=27.03 E-value=14 Score=29.58 Aligned_cols=24 Identities=8% Similarity=-0.156 Sum_probs=19.0
Q ss_pred cCCeEEEEECCeEEeecCCCeEec
Q psy9673 131 DNNWFYGEVNGTTGAFPMSYVQFV 154 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~p~~~~~~~ 154 (162)
.++||+|.+.|..+-+|-.|+++.
T Consensus 433 ~~e~~eg~~mg~ke~~~~~~~~~~ 456 (460)
T KOG3771|consen 433 PEEQDEGWLMGVKESDWNGLFPLN 456 (460)
T ss_pred ccchhhHHHhhhcccccccceecc
Confidence 778999999888877777777654
No 314
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.84 E-value=29 Score=22.20 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=14.9
Q ss_pred chhcHHHHHhcCCCccccccccccc
Q psy9673 33 CKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 33 C~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
|..|-....--+..-.|..|+.++.
T Consensus 72 CP~C~K~TKmLGr~D~CM~C~~pLT 96 (114)
T PF11023_consen 72 CPNCGKQTKMLGRVDACMHCKEPLT 96 (114)
T ss_pred CCCCCChHhhhchhhccCcCCCcCc
Confidence 5556544422223347999999875
No 315
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.64 E-value=35 Score=19.19 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=20.1
Q ss_pred ccCCccchhcHHHHHhcCCCcccccccccccccccCCC
Q psy9673 27 PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64 (162)
Q Consensus 27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~~~~l~ 64 (162)
.|.--=|.-=++.-+.......||+|+.+...+.+.+|
T Consensus 20 ~Ct~e~C~gWmR~nFs~~~~p~CPlC~s~M~~~~r~Lp 57 (59)
T PF14169_consen 20 ECTSEDCNGWMRDNFSFEEEPVCPLCKSPMVSGTRMLP 57 (59)
T ss_pred EeCCCCCCcccccccccCCCccCCCcCCccccceeecc
Confidence 45554443222222233344699999987764444443
No 316
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=26.50 E-value=15 Score=23.53 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=6.1
Q ss_pred cccccccc
Q psy9673 47 LRCPECRV 54 (162)
Q Consensus 47 ~~Cp~Cr~ 54 (162)
+.||.|+.
T Consensus 87 ~~CP~Cgs 94 (113)
T PRK12380 87 AQCPHCHG 94 (113)
T ss_pred ccCcCCCC
Confidence 46999975
No 317
>PLN02248 cellulose synthase-like protein
Probab=26.42 E-value=45 Score=30.11 Aligned_cols=29 Identities=28% Similarity=0.754 Sum_probs=24.5
Q ss_pred ccCCccchhcHHHHHhcCCCccccccccccc
Q psy9673 27 PCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 27 ~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
.|+...|..|....+...+ .||-|+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGG--ICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCC--CCCCCccccc
Confidence 4677789999999888766 8999999885
No 318
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=26.37 E-value=43 Score=17.47 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=12.4
Q ss_pred cccccccccCCCEEcccCCccchhc
Q psy9673 12 CSVCLDRLDTSSKVLPCQHTFCKKC 36 (162)
Q Consensus 12 C~iC~~~~~~~p~~~~C~H~fC~~C 36 (162)
|..|...-. -=+-+.|++.+|..-
T Consensus 2 C~~C~~~~~-l~~CL~C~~~~c~~~ 25 (50)
T smart00290 2 CSVCGTIEN-LWLCLTCGQVGCGRY 25 (50)
T ss_pred cccCCCcCC-eEEecCCCCcccCCC
Confidence 555553332 224456777777543
No 319
>KOG1701|consensus
Probab=26.31 E-value=26 Score=27.89 Aligned_cols=35 Identities=17% Similarity=0.485 Sum_probs=23.4
Q ss_pred CccccccccccccCCCEEcccCCccchhcHHHHHh
Q psy9673 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS 42 (162)
Q Consensus 8 ~~l~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~ 42 (162)
+-|.|..|...|..+....-=+-.||..|....+.
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tle 335 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLE 335 (468)
T ss_pred cceehHhhhhhhccccccccCCcccchHHHHHHHH
Confidence 55678888888865555555666677777655544
No 320
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=25.82 E-value=21 Score=19.92 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=6.2
Q ss_pred ccccccccccc
Q psy9673 47 LRCPECRVLVE 57 (162)
Q Consensus 47 ~~Cp~Cr~~~~ 57 (162)
..||.|++.+.
T Consensus 3 v~CP~C~k~~~ 13 (57)
T PF03884_consen 3 VKCPICGKPVE 13 (57)
T ss_dssp EE-TTT--EEE
T ss_pred ccCCCCCCeec
Confidence 36999999876
No 321
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=24.88 E-value=20 Score=22.25 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=6.6
Q ss_pred Ccccccccccc
Q psy9673 46 ELRCPECRVLV 56 (162)
Q Consensus 46 ~~~Cp~Cr~~~ 56 (162)
...|+.|+...
T Consensus 16 ~~~C~~C~~~~ 26 (104)
T TIGR01384 16 VYVCPSCGYEK 26 (104)
T ss_pred eEECcCCCCcc
Confidence 45677776543
No 322
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=24.51 E-value=39 Score=21.60 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=9.2
Q ss_pred CEEcccCCccch
Q psy9673 23 SKVLPCQHTFCK 34 (162)
Q Consensus 23 p~~~~C~H~fC~ 34 (162)
.+...|||.||.
T Consensus 24 ~vkc~CGh~f~d 35 (112)
T PF08882_consen 24 VVKCDCGHEFCD 35 (112)
T ss_pred eeeccCCCeecC
Confidence 345579999996
No 323
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.50 E-value=26 Score=17.34 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy9673 47 LRCPECRVLVE 57 (162)
Q Consensus 47 ~~Cp~Cr~~~~ 57 (162)
+.||-|.+.+.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 36888888765
No 324
>KOG3726|consensus
Probab=24.46 E-value=39 Score=28.65 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=27.9
Q ss_pred ccccccccccC---CCEEcccCCccchhcHHHHHhcCCCcccccccccc
Q psy9673 11 ECSVCLDRLDT---SSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56 (162)
Q Consensus 11 ~C~iC~~~~~~---~p~~~~C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~ 56 (162)
.|-+|+.-=.. -+.++.|+-.||..|...+-+ .|++|....
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~~-----~~~vC~~~~ 699 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYAS-----ISEVCGPDA 699 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhhhhhhhc-----cCcccCchh
Confidence 47777743221 256678999999999876544 699997643
No 325
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.81 E-value=25 Score=22.63 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=12.0
Q ss_pred cchhcHHHHHhcCCCc-cccccccc
Q psy9673 32 FCKKCLEEIVSSHKEL-RCPECRVL 55 (162)
Q Consensus 32 fC~~Cl~~~~~~~~~~-~Cp~Cr~~ 55 (162)
+|..|-..+-.....+ .||.|+..
T Consensus 73 ~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 73 ECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred EhhhCCCccccCCccCCcCcCCCCC
Confidence 4555543332221122 49999864
No 326
>PF12907 zf-met2: Zinc-binding
Probab=23.76 E-value=22 Score=18.25 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy9673 47 LRCPECRVLVE 57 (162)
Q Consensus 47 ~~Cp~Cr~~~~ 57 (162)
+.|++|+.++.
T Consensus 2 i~C~iC~qtF~ 12 (40)
T PF12907_consen 2 IICKICRQTFM 12 (40)
T ss_pred cCcHHhhHHHH
Confidence 47999998764
No 327
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.33 E-value=72 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.7
Q ss_pred cCCeEEEEECCeEEee
Q psy9673 131 DNNWFYGEVNGTTGAF 146 (162)
Q Consensus 131 ~~~w~~g~~~g~~g~~ 146 (162)
++.|..-+..|..|..
T Consensus 141 ~g~wC~~~~~g~~GWi 156 (171)
T COG3807 141 KGQWCRLTAKGYSGWI 156 (171)
T ss_pred ccceEEEEccCcccee
Confidence 8899999998888865
No 328
>PHA02945 interferon resistance protein; Provisional
Probab=23.16 E-value=1.8e+02 Score=17.84 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=26.4
Q ss_pred CCCEE--EEeEecCCCeEE--EEecCCCCceeeeeEEecCCeEEEE
Q psy9673 97 KDDIV--ILRRKIDNNWFY--GEVNGTTGAFPMSYVQIDNNWFYGE 138 (162)
Q Consensus 97 ~gd~i--~v~~~~~~~w~~--g~~~~~~G~~P~~~v~~~~~w~~g~ 138 (162)
.|+++ .+.. .+.+-+- -++.|.+|++|.+-++..++|..-|
T Consensus 11 ~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~r 55 (88)
T PHA02945 11 VGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKYR 55 (88)
T ss_pred CCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEeee
Confidence 46644 4444 3433222 2357889999998888888888763
No 329
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=22.85 E-value=30 Score=15.54 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=8.9
Q ss_pred CCccccccccccc
Q psy9673 45 KELRCPECRVLVE 57 (162)
Q Consensus 45 ~~~~Cp~Cr~~~~ 57 (162)
..+.|+.|...+.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
Confidence 3468888877653
No 330
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=22.66 E-value=19 Score=22.44 Aligned_cols=47 Identities=15% Similarity=0.352 Sum_probs=14.4
Q ss_pred ccccccccccc-CCC--EEcccCCccchhcHHHHHh--cCCCccccccccccc
Q psy9673 10 LECSVCLDRLD-TSS--KVLPCQHTFCKKCLEEIVS--SHKELRCPECRVLVE 57 (162)
Q Consensus 10 l~C~iC~~~~~-~~p--~~~~C~H~fC~~Cl~~~~~--~~~~~~Cp~Cr~~~~ 57 (162)
-.|++|...+. .++ .+..=||.| .+|....+. .-+...|++|+..+-
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EEE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccCCeeEcCCCCCEEe
Confidence 46999999773 233 334557987 456544432 122368999998653
No 331
>COG4640 Predicted membrane protein [Function unknown]
Probab=22.54 E-value=28 Score=27.49 Aligned_cols=24 Identities=25% Similarity=0.757 Sum_probs=13.5
Q ss_pred cchhcHHHHHhcCCCccccccccccc
Q psy9673 32 FCKKCLEEIVSSHKELRCPECRVLVE 57 (162)
Q Consensus 32 fC~~Cl~~~~~~~~~~~Cp~Cr~~~~ 57 (162)
||..|-..-.+ ....|+.|+.++.
T Consensus 3 fC~kcG~qk~E--d~~qC~qCG~~~t 26 (465)
T COG4640 3 FCPKCGSQKAE--DDVQCTQCGHKFT 26 (465)
T ss_pred ccccccccccc--ccccccccCCcCC
Confidence 66667543222 2334777777764
No 332
>KOG2789|consensus
Probab=22.33 E-value=24 Score=27.87 Aligned_cols=32 Identities=25% Similarity=0.645 Sum_probs=23.8
Q ss_pred ccccccccccccC-CCEEcccCCccchhcHHHH
Q psy9673 9 LLECSVCLDRLDT-SSKVLPCQHTFCKKCLEEI 40 (162)
Q Consensus 9 ~l~C~iC~~~~~~-~p~~~~C~H~fC~~Cl~~~ 40 (162)
..+|+||+-++-- .-.+..|.-+.|..|+.+.
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheecc
Confidence 3589999987742 2345569999999998654
No 333
>COG4951 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.16 E-value=29 Score=26.01 Aligned_cols=17 Identities=18% Similarity=0.308 Sum_probs=11.2
Q ss_pred CeEEEEECCeEEeecCC
Q psy9673 133 NWFYGEVNGTTGAFPMS 149 (162)
Q Consensus 133 ~w~~g~~~g~~g~~p~~ 149 (162)
--|..+..||+|++|+.
T Consensus 67 ~rw~s~~~GKsgysPa~ 83 (361)
T COG4951 67 LRWESKTSGKSGYSPAC 83 (361)
T ss_pred hhccccccCccCcCchh
Confidence 44666667777777763
No 334
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=22.13 E-value=52 Score=16.33 Aligned_cols=10 Identities=40% Similarity=0.787 Sum_probs=7.4
Q ss_pred cccccccccc
Q psy9673 10 LECSVCLDRL 19 (162)
Q Consensus 10 l~C~iC~~~~ 19 (162)
..|++|...+
T Consensus 9 ~~C~~C~~~~ 18 (36)
T PF11781_consen 9 EPCPVCGSRW 18 (36)
T ss_pred CcCCCCCCeE
Confidence 4588888875
No 335
>KOG1314|consensus
Probab=22.09 E-value=51 Score=25.74 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=31.5
Q ss_pred cceeeccCCCEEEEeEecCCCeEEEEe-------cC----CCCceeeee-EEecCCeEE
Q psy9673 90 ILDLNFKKDDIVILRRKIDNNWFYGEV-------NG----TTGAFPMSY-VQIDNNWFY 136 (162)
Q Consensus 90 ~~el~~~~gd~i~v~~~~~~~w~~g~~-------~~----~~G~~P~~~-v~~~~~w~~ 136 (162)
...+++++||.|.+..- -..|.+|+. ++ .+||||.+. ++.-+.|.+
T Consensus 331 dprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e~~~~ 388 (414)
T KOG1314|consen 331 DPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKCEKDYE 388 (414)
T ss_pred CcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhccccccccccccccccCC
Confidence 55678889999877666 457888831 22 369999987 666555544
No 336
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=22.06 E-value=34 Score=14.78 Aligned_cols=8 Identities=25% Similarity=1.078 Sum_probs=3.6
Q ss_pred cccccccc
Q psy9673 12 CSVCLDRL 19 (162)
Q Consensus 12 C~iC~~~~ 19 (162)
|.+|...+
T Consensus 3 C~~C~~~f 10 (25)
T PF12874_consen 3 CDICNKSF 10 (25)
T ss_dssp ETTTTEEE
T ss_pred CCCCCCCc
Confidence 44444444
No 337
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.63 E-value=44 Score=19.00 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=8.8
Q ss_pred ccccccccccc
Q psy9673 47 LRCPECRVLVE 57 (162)
Q Consensus 47 ~~Cp~Cr~~~~ 57 (162)
..||.|++.+.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 47999999763
No 338
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=21.56 E-value=40 Score=15.64 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=5.0
Q ss_pred cccccccccc
Q psy9673 48 RCPECRVLVE 57 (162)
Q Consensus 48 ~Cp~Cr~~~~ 57 (162)
.||.|...+.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 3888888765
No 339
>KOG1769|consensus
Probab=21.36 E-value=1.1e+02 Score=19.11 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=30.2
Q ss_pred Ccchhhhhhhhccccce---eeeEeeeec---------cceeeccCCCEEEEeEe
Q psy9673 64 PPNVLLMRILEGLFPLV---VSFIRFFLN---------ILDLNFKKDDIVILRRK 106 (162)
Q Consensus 64 ~~n~~l~~i~e~~~~~~---~~~~~~~~~---------~~el~~~~gd~i~v~~~ 106 (162)
..+..+.+|.+.|...+ ...-+.+|+ +.++.++.||.|.+...
T Consensus 38 kr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 38 KRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred ecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEee
Confidence 44566777777776654 445667777 77888999998866544
No 340
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=20.90 E-value=32 Score=27.09 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=8.7
Q ss_pred cccccccccccc
Q psy9673 47 LRCPECRVLVEC 58 (162)
Q Consensus 47 ~~Cp~Cr~~~~~ 58 (162)
..|| |+..+..
T Consensus 260 ~~Cp-CG~~i~~ 270 (374)
T TIGR00375 260 ANCP-CGGRIKK 270 (374)
T ss_pred CCCC-CCCccee
Confidence 4799 9998763
No 341
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=20.82 E-value=1.4e+02 Score=16.84 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=12.5
Q ss_pred ccCCCEEEEeEecCC---CeEEEEe
Q psy9673 95 FKKDDIVILRRKIDN---NWFYGEV 116 (162)
Q Consensus 95 ~~~gd~i~v~~~~~~---~w~~g~~ 116 (162)
|+.|+.+.|....+. .|+.+.+
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 578999988877643 3666663
No 342
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=20.55 E-value=38 Score=14.96 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=5.6
Q ss_pred cccccccccc
Q psy9673 11 ECSVCLDRLD 20 (162)
Q Consensus 11 ~C~iC~~~~~ 20 (162)
.|.+|...|.
T Consensus 3 ~C~~C~~~F~ 12 (27)
T PF13912_consen 3 ECDECGKTFS 12 (27)
T ss_dssp EETTTTEEES
T ss_pred CCCccCCccC
Confidence 4556655554
No 343
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=20.43 E-value=24 Score=24.01 Aligned_cols=12 Identities=25% Similarity=1.113 Sum_probs=10.0
Q ss_pred Cccccccccccc
Q psy9673 46 ELRCPECRVLVE 57 (162)
Q Consensus 46 ~~~Cp~Cr~~~~ 57 (162)
.+.||.|+..+.
T Consensus 128 ~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 128 NFTCPRCGAMLD 139 (158)
T ss_pred CCcCCCCCCEee
Confidence 479999999875
No 344
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.37 E-value=65 Score=23.86 Aligned_cols=23 Identities=17% Similarity=0.736 Sum_probs=14.6
Q ss_pred ccccccccccCCCEEcccCCccchhcHHHHHh
Q psy9673 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVS 42 (162)
Q Consensus 11 ~C~iC~~~~~~~p~~~~C~H~fC~~Cl~~~~~ 42 (162)
.|+||. ..-.+.+|..|+...+.
T Consensus 1 ~C~iC~---------~~~~~~~C~~C~~~~L~ 23 (302)
T PF10186_consen 1 QCPICH---------NSRRRFYCANCVNNRLL 23 (302)
T ss_pred CCCCCC---------CCCCCeECHHHHHHHHH
Confidence 488888 12334578888865533
No 345
>PF11809 DUF3330: Domain of unknown function (DUF3330); InterPro: IPR021767 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=20.36 E-value=34 Score=19.72 Aligned_cols=36 Identities=19% Similarity=0.536 Sum_probs=23.5
Q ss_pred ccccccccccccCCCEEcccC----Cccch-hcHHHHHhcC
Q psy9673 9 LLECSVCLDRLDTSSKVLPCQ----HTFCK-KCLEEIVSSH 44 (162)
Q Consensus 9 ~l~C~iC~~~~~~~p~~~~C~----H~fC~-~Cl~~~~~~~ 44 (162)
.+.|-+|...+......++=+ +.||. .|..+|....
T Consensus 11 ~~sC~vC~KEIPl~~a~t~E~~eYV~hFCGLeCY~~w~a~~ 51 (70)
T PF11809_consen 11 TTSCCVCCKEIPLDAAFTPEAAEYVEHFCGLECYQRWQARA 51 (70)
T ss_pred cchHHHHhhhCChhhccCcchHHHHHHHhhHHHHHHHHHHH
Confidence 378999988885444445433 33664 7888887643
No 346
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=20.14 E-value=22 Score=22.24 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=17.0
Q ss_pred cCCccchhcHHHHHhcCCCccccccccccccc
Q psy9673 28 CQHTFCKKCLEEIVSSHKELRCPECRVLVECK 59 (162)
Q Consensus 28 C~H~fC~~Cl~~~~~~~~~~~Cp~Cr~~~~~~ 59 (162)
|+|.-=..|....-...+...|-.|...+...
T Consensus 28 Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e~e 59 (104)
T COG4888 28 CGHEKVSSCTVKKTVNIGTAVCGNCGLSFECE 59 (104)
T ss_pred cCCeeeeEEEEEecCceeEEEcccCcceEEEe
Confidence 33333334443333333456899998887633
Done!