RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9673
(162 letters)
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 85.5 bits (212), Expect = 8e-23
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 6 LNDLLECSVCLDRLDTSS---KVLPCQHTFCKKCLEEIVSSH-KELRCPECRVLVECK-V 60
L ++LEC +C++ K+L C HT C++CLE++++S +RCP C + +
Sbjct: 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71
Query: 61 DELPPNVLLMRILEG 75
+L N+ +++
Sbjct: 72 TQLTDNLTVLKSGPS 86
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 69.2 bits (169), Expect = 2e-15
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 47/108 (43%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI--------------------- 130
++ D+V + K ++ W++ ++ G P S+++
Sbjct: 27 EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVA 86
Query: 131 --------------------------DNNWFYGEVNGTTGAFPMSYVQ 152
+ W+ + TG FP Y+Q
Sbjct: 87 IKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 54.2 bits (130), Expect = 6e-10
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
+++ + + V + K+ + W+ + TG FP Y+Q
Sbjct: 97 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG 137
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 65.4 bits (160), Expect = 4e-15
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+LNFK D++ L +I+ +W G V G TG FP+S+V+I
Sbjct: 34 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 66.1 bits (161), Expect = 6e-15
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
+ + +C C + + CQH CK CL+ + CP CR + +
Sbjct: 49 VEETFQCICCQELV-FRPITTVCQHNVCKDCLDR-SFRAQVFSCPACRYDLGRS-YAMQV 105
Query: 66 NVLLMRILEGLFP 78
N L +L LFP
Sbjct: 106 NQPLQTVLNQLFP 118
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 64.2 bits (157), Expect = 8e-15
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F++ D++ L +ID NW+ G ++G +G FP+SYVQ+
Sbjct: 29 ELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQV 67
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 64.2 bits (157), Expect = 9e-15
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
DL F K D+++LRR++D NW+ GE+NG +G FP S V++
Sbjct: 23 DLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 63.3 bits (155), Expect = 1e-14
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+LNFK D++ L +I+ +W G V G TG FP+S+V+I
Sbjct: 20 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 64.9 bits (158), Expect = 2e-14
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV-----DELP 64
+C +C++ L LPC HT CK C + V L CP CR V
Sbjct: 16 CQCGICMEIL-VEPVTLPCNHTLCKPCFQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSL 73
Query: 65 PNVLLMRILEGLFP 78
NV L I++ +P
Sbjct: 74 VNVELWTIIQKHYP 87
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 63.0 bits (154), Expect = 2e-14
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+FKK ++L + +W+ G NG G P Y+ +
Sbjct: 22 ELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 63.1 bits (154), Expect = 3e-14
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L FK+ DI+ L +ID NW+ G ++G +G FP++YV+I
Sbjct: 23 ELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 62.6 bits (153), Expect = 3e-14
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L +K DIV + +++D NW GE +G G FP +YV++
Sbjct: 17 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 62.6 bits (153), Expect = 4e-14
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L FK+ DI+ L +ID NW+ G ++G +G FP++YV++
Sbjct: 19 ELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 62.2 bits (152), Expect = 4e-14
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L +K DIV + ++ID NW+ GE +G G FP +Y+++
Sbjct: 23 ELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 64.3 bits (156), Expect = 6e-14
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
L C C + + C H CK CL+ + CP CR + + + P
Sbjct: 75 LEQSFMCVCCQELV-YQPVTTECFHNVCKDCLQRSF-KAQVFSCPACRHDLG-QNYIMIP 131
Query: 66 NVLLMRILEGLFP 78
N +L +L+ FP
Sbjct: 132 NEILQTLLDLFFP 144
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 61.8 bits (151), Expect = 7e-14
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
DL F++ DI+++ K++ W GE G G FP +V+
Sbjct: 21 DLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 61.6 bits (150), Expect = 9e-14
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+FKK ++L ++ ++W+ G NG G P Y+ +
Sbjct: 25 ELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 61.2 bits (149), Expect = 1e-13
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L+F++ D++ L + ++W+ GE NG G P Y+ +
Sbjct: 26 ELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAG 67
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 61.3 bits (149), Expect = 2e-13
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
+L+F+K + + L RK++ NW+ G + G G FP SYVQ+
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV 73
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 60.7 bits (148), Expect = 2e-13
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQI 130
+++F+K + + L R++D NW+ G + GT G FP++YV +
Sbjct: 23 EMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 60.4 bits (147), Expect = 4e-13
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 1 MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPECR 53
M L ++ + C +CL+ L T L C H+FC+ CL ++ + E CP CR
Sbjct: 8 MASGILVNVKEEVTCPICLELL-TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
Query: 54 VLVECKVDELPPNVLLMRILE 74
+ + + + PN + I+E
Sbjct: 67 --ISYQPENIRPNRHVANIVE 85
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 59.3 bits (144), Expect = 5e-13
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 8 DLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVD 61
L C C K+LPC HT C CLE ++CP C+ D
Sbjct: 5 QFLRCQQCQAEA-KCPKLLPCLHTLCSGCLE-----ASGMQCPICQAPWPLGAD 52
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 60.6 bits (147), Expect = 6e-13
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECK--VDEL 63
LN L C +C ++ ++ C H+FCK C+ + + K CP C V V + +
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY--CPICDVQVHKTRPLLNI 69
Query: 64 PPNVLLMRILEGLFP 78
+ L I+ L P
Sbjct: 70 RSDKTLQDIVYKLVP 84
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 59.2 bits (144), Expect = 7e-13
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQI 130
+++F+K + + L R++D NW+ G + GT G FP++YV +
Sbjct: 22 EMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 63.9 bits (154), Expect = 8e-13
Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 44/162 (27%)
Query: 9 LLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68
L E + + LP T K + E+R P ++ + LP VL
Sbjct: 71 LEERFGPDSKSSALAXTLP---TLPAKVYVGVKQEIAEMRIPALNAYMK-SLLSLPVWVL 126
Query: 69 LMRILEGLFPLVVSFIRFFLNIL------------------------------------- 91
+ + F L
Sbjct: 127 MDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGN 186
Query: 92 ---DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+LNFK D++ L +I+ +W G V G TG FP+S+V+I
Sbjct: 187 SKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228
Score = 29.2 bits (64), Expect = 0.58
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 91 LDLNFKKDDIVILRRKIDNNWFYGEVNGTT---GAFP 124
L+ + D+V L D + G FP
Sbjct: 287 LNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFP 323
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 59.3 bits (144), Expect = 9e-13
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 18 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 56
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 58.9 bits (143), Expect = 1e-12
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F+K+DI+ + + D + + GE+NG G FP +V++
Sbjct: 23 ELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 58.5 bits (142), Expect = 2e-12
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+FK+ DI+ +L + D NW+ E+NG G P +Y+++
Sbjct: 25 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 64
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 58.5 bits (142), Expect = 2e-12
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 1 MDEWTLNDL---LECSVCLDRLDTSSKVLPCQHTFCKKCL----EEIVSSHKELRCPECR 53
M L + + C +CL+ L C H+FC+ C+ E ++ + CP CR
Sbjct: 8 MASSVLEMIKEEVTCPICLELL-KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
Query: 54 VLVECKVDELPPNVLLMRILE 74
V L PN+ + I+E
Sbjct: 67 --VPYPFGNLKPNLHVANIVE 85
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 58.1 bits (141), Expect = 2e-12
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 21 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 58.1 bits (141), Expect = 2e-12
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+F++ I+ + +K D+ W+ G +NG TG FP +YV+
Sbjct: 33 ELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 57.5 bits (140), Expect = 3e-12
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
DL K D V L K+ W+ G NG TG FP +YV+
Sbjct: 18 DLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 57.6 bits (140), Expect = 3e-12
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F++ DI+ + D NW+ G G TG P +YV
Sbjct: 23 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 58.2 bits (141), Expect = 3e-12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L FK +I+I+ D NW+ GE + G FP ++V + N
Sbjct: 33 ELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLN 74
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 58.6 bits (142), Expect = 3e-12
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+F K ++ + K D +W+ GE+NG TG FP +YV++
Sbjct: 50 ELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 57.4 bits (139), Expect = 3e-12
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 43
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 57.7 bits (140), Expect = 4e-12
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+LN +K DIVI+ K + W++G +NG G FP +YV+
Sbjct: 23 ELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 57.8 bits (140), Expect = 4e-12
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L FK D++ + + +W++G+++ G FP S+V++ N
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 67
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 58.0 bits (140), Expect = 5e-12
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
++ ++ C +C+++L + C C C+ ++ + +CP CR ++ EL
Sbjct: 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA-QCPHCR--APLQLRELV 74
Query: 65 PNVLLMRILEGL 76
+ + L
Sbjct: 75 NCRWAEEVTQQL 86
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 57.3 bits (139), Expect = 6e-12
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCL-----EEIVSSHKELRCPECRVLVECKVDELP 64
+ C +CL+ L T L C H+ C+ C+ E + S + CP C + + L
Sbjct: 13 VTCPICLELL-TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG--ISYSFEHLQ 69
Query: 65 PNVLLMRILE 74
N L I+E
Sbjct: 70 ANQHLANIVE 79
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 56.4 bits (137), Expect = 7e-12
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L F++ DI+ + D NW+ G G TG P +YV
Sbjct: 19 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 56.5 bits (137), Expect = 8e-12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L FK +++ + D NW+ GE + TG FP ++V D +
Sbjct: 21 ELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 56.6 bits (137), Expect = 1e-11
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 33 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 71
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 56.2 bits (136), Expect = 1e-11
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 53
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 56.0 bits (136), Expect = 1e-11
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L FK+ D++ L K D NW+ G++N G FP +YV
Sbjct: 18 ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 57.1 bits (138), Expect = 1e-11
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
T++DLL C +C + + + + C H +C C+ + +S + CP C V +L
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTCC--VTVTEPDLK 73
Query: 65 PNVLLMRILEGL 76
N +L +++ L
Sbjct: 74 NNRILDELVKSL 85
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 56.7 bits (137), Expect = 1e-11
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L K DI+ + +++ W+ G +NG TG FP ++++
Sbjct: 34 ELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 72
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 55.7 bits (135), Expect = 1e-11
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L KK DI+ L + +W+ EVNG G P +Y++
Sbjct: 22 ELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 56.2 bits (136), Expect = 1e-11
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYVQI 130
L FK++DI+ + K N WF G++NG G+FP+ +V+I
Sbjct: 26 LLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 55.7 bits (135), Expect = 1e-11
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F++ D + + D NW+ G +G TG FP +YV
Sbjct: 18 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 58.1 bits (140), Expect = 2e-11
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
L + L+C +C + + L C H+FC C+ E +++ CP CR ++ K L
Sbjct: 61 LENELQCIICSEYF-IEAVTLNCAHSFCSYCINE--WMKRKIECPICRKDIKSKTYSLVL 117
Query: 66 NVLLMRILEGL 76
+ + +++ L
Sbjct: 118 DNCINKMVNNL 128
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 57.2 bits (138), Expect = 2e-11
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
L LL CS C + L + C+H FC C+ + + + CP C + +L
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVCY--TPAWIQDLKI 72
Query: 66 NVLLMRILE 74
N L +++
Sbjct: 73 NRQLDSMIQ 81
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 56.2 bits (136), Expect = 2e-11
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
+++F DDI+ ID+ W+ G G G FP +YV++
Sbjct: 33 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 72
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 55.8 bits (135), Expect = 2e-11
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L+ K DI+ + R + W+ G +NG TG FP +YV+
Sbjct: 27 LSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVRE 64
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 56.0 bits (135), Expect = 2e-11
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
++ KK DI+ L + +W+ EVN G P +YV+
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 45
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 55.7 bits (135), Expect = 2e-11
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
DL + DI+ L + +W+ G++ G FP ++VQ
Sbjct: 23 DLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 55.9 bits (135), Expect = 2e-11
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
L + CS+C L ++ + C HTFCK C+ RCP+C ++V
Sbjct: 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN--RCPKCNIVVH 61
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 55.3 bits (134), Expect = 2e-11
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
+++F DDI+ ID+ W+ G G G FP +YV++
Sbjct: 25 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 55.3 bits (134), Expect = 2e-11
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L +IV + +K ++NW NG G P +Y++
Sbjct: 23 ELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLE 60
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 55.4 bits (134), Expect = 2e-11
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQID 131
+L FK +I+ + D NW+ GE + G FP ++V D
Sbjct: 33 ELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTAD 72
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 55.9 bits (135), Expect = 2e-11
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L + DIV + R N + GEVNG G FP ++V+I
Sbjct: 34 ALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 55.9 bits (135), Expect = 2e-11
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKID--NNWFYGEVNGTTGAFPMSYVQIDN 132
DLNF+ D + + K D +W+ G++ G TG FP +YV +++
Sbjct: 33 DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 57.7 bits (139), Expect = 2e-11
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
L+ L C +CLD L + C H FC C+ + S CP CR + L P
Sbjct: 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKL-VSKRSLRP 108
Query: 66 NVLLMRILEGLFP 78
+ ++ ++P
Sbjct: 109 DPNFDALISKIYP 121
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 55.0 bits (133), Expect = 3e-11
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
L+F + + +++ R+ +W++GE G G P ++V
Sbjct: 23 QLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVG 60
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 55.5 bits (134), Expect = 3e-11
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQ-IDNNWFYGEVNGTTGAFPM 148
L+F + D+ ++ ++ W +G G +G FP VQ F +G+ P
Sbjct: 24 LLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQRSGSGPS 83
Query: 149 S 149
S
Sbjct: 84 S 84
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 55.5 bits (134), Expect = 3e-11
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+ K VI+ K + W+ G NG G FP +YV
Sbjct: 33 ELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 54.5 bits (132), Expect = 4e-11
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+F K D++ + R + W+ G NG TG FP +YV+
Sbjct: 22 ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 54.5 bits (132), Expect = 4e-11
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L K DI+ + +++ W+ G +NG TG FP ++++
Sbjct: 23 ELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 54.2 bits (131), Expect = 5e-11
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L + DIV + R N + GEVNG G FP ++V+I
Sbjct: 19 ALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 54.6 bits (132), Expect = 5e-11
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
LNF K DI+ + + NW++GEV+G G FP SYV+I
Sbjct: 26 HLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 54.2 bits (131), Expect = 6e-11
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+ DI+ + + ++ W+ E NG G P SY++
Sbjct: 24 ELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 53.8 bits (130), Expect = 6e-11
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+F K D++ + R + W+ G NG TG FP +YV+
Sbjct: 20 ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 54.7 bits (132), Expect = 6e-11
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+ D++ V +D++W GE G P++Y+++
Sbjct: 33 ELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 53.7 bits (130), Expect = 7e-11
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+F +DI+ + ++ + W+ G + G G FP +YV
Sbjct: 21 ELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 53.8 bits (130), Expect = 8e-11
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L K DI+ + +++ W+ G +N G FP ++V+
Sbjct: 23 ELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 53.7 bits (130), Expect = 8e-11
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L FK+ D +I+ +K W+ GE+NG G P +YVQ
Sbjct: 19 ELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 53.8 bits (130), Expect = 8e-11
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L K+ DI +I + ID W+ GE+NG G FP ++V++
Sbjct: 23 ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 54.1 bits (130), Expect = 9e-11
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
+ + EC++CL LPC+H FC C++ K RC CR E
Sbjct: 7 GNTAPSLTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGK--RCALCR--QEIPE 61
Query: 61 DELPPN 66
D L
Sbjct: 62 DFLDSG 67
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 54.4 bits (131), Expect = 1e-10
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
+ D L C +C D + + + C +++C +C+ + E CP C + D L
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ-NDVSPDALIA 68
Query: 66 NVLLMRILE 74
N L + +
Sbjct: 69 NKFLRQAVN 77
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 53.5 bits (129), Expect = 1e-10
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L + ++V + + + + GE NG G FP ++V++
Sbjct: 24 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL 62
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 53.4 bits (129), Expect = 1e-10
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L K DI+ + +++ W+ G +N G FP ++V+
Sbjct: 17 ELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 53.5 bits (129), Expect = 2e-10
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQ 129
+L+ ++ D+V + +I D W+ GE NG G FP +YV+
Sbjct: 23 ELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 52.7 bits (127), Expect = 2e-10
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L K+ DI +I + ID W+ GE+NG G FP ++V++
Sbjct: 25 ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 52.7 bits (127), Expect = 3e-10
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L K+ DI +I + ID W+ GE+NG G FP ++V++
Sbjct: 18 ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 52.7 bits (127), Expect = 3e-10
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGT---TGAFPMSYVQI 130
+L F + +++I+ + D W+ G + G G FP+S+V I
Sbjct: 26 ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 52.4 bits (126), Expect = 3e-10
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L KK DI+ + K + G +N G F YV +
Sbjct: 27 SLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDV 65
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 52.3 bits (126), Expect = 3e-10
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
++ F+K V + RK W+Y G G P SY++
Sbjct: 24 EIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 53.3 bits (128), Expect = 4e-10
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVN---GTTGAFPMSYVQI 130
+L + + + + WF + G G P+ +V I
Sbjct: 21 ELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 51.8 bits (125), Expect = 4e-10
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F+ ++V + + +W+ G ++ G FP +YV
Sbjct: 17 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 52.3 bits (126), Expect = 4e-10
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDD-IVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+F + + W G +NG TG P +YV+
Sbjct: 26 ELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 51.9 bits (125), Expect = 5e-10
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L+ + ++V + K ++ W++ + G P +Y++ N+
Sbjct: 24 ELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 51.1 bits (123), Expect = 7e-10
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDN 132
+L F ++D +I +D++W+ GE+ +G+ G FP +YV + N
Sbjct: 16 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 51.7 bits (124), Expect = 7e-10
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
+ D L C +C D + + + C +++C +C+ + E CP C
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 51.0 bits (123), Expect = 9e-10
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L +I+ RK D W+ G++NG G FP ++V+
Sbjct: 17 ELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 54.8 bits (131), Expect = 1e-09
Identities = 15/101 (14%), Positives = 32/101 (31%)
Query: 30 HTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRFFLN 89
+S + N+ L L + + +
Sbjct: 203 QMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYD 262
Query: 90 ILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L KK V++ +K+ N + E++G G+ P +Y++
Sbjct: 263 PTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRF 303
Score = 49.8 bits (118), Expect = 5e-08
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSY 150
DL F++ + + + K + +W+ GTTG P +YVQI + + +
Sbjct: 163 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGS 222
Query: 151 VQFVWY 156
Sbjct: 223 SGGGAE 228
Score = 27.1 bits (59), Expect = 2.9
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFP 124
N ++ ++ V +FP
Sbjct: 88 GNAVCHYLIERGEPKEDGTAAAGVKIANQSFP 119
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 52.0 bits (125), Expect = 1e-09
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKEL-RCPECRVLVECKVDELP 64
+ +LEC +CL+ + C H FCK C+ ++++ K +CP C+ + L
Sbjct: 18 MQKILECPICLELI-KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK--NDITKRSLQ 74
Query: 65 PNVLLMRILEGLFPLVVSF 83
+ +++E L ++ +F
Sbjct: 75 ESTRFSQLVEELLKIICAF 93
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 50.8 bits (122), Expect = 1e-09
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTT-----GAFPMSYVQID 131
DLNF+KD +I+ D W++GE + G FP S+V +
Sbjct: 23 DLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ 67
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 51.0 bits (122), Expect = 2e-09
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKI--DNNWFYGEVNGTTGAFPMSYVQ 129
+++F DI+ + K + W YG G G FP +YV+
Sbjct: 21 EMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 50.5 bits (121), Expect = 2e-09
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
L D EC +C+D + +LPC H+FC+KC+++ H+ CP CR+ +
Sbjct: 11 QLTDEEECCICMD--GRADLILPCAHSFCQKCIDKWSDRHRN--CPICRLQMT 59
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 50.3 bits (121), Expect = 2e-09
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
DL F + + +++ +K D W+ G + +G FP +YV+
Sbjct: 24 DLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKP 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 51.4 bits (123), Expect = 2e-09
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
L EC +CL L + PC H FCK C+ + + +CP ++L
Sbjct: 14 PLESKYECPICLMAL-REAVQTPCGHRFCKACIIKSIRD-AGHKCPVDN--EILLENQLF 69
Query: 65 PNVLLMRILEGLF 77
P+ R + L
Sbjct: 70 PDNFAKREILSLM 82
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 50.1 bits (120), Expect = 3e-09
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPECR 53
+ C +CLD L + C H FC KC+ +I +S +CP C+
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCK 64
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 49.7 bits (119), Expect = 3e-09
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 11 ECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
C +CL+ S LPC H FC C+ + + CP C+V VE
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLCKVPVE 51
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 49.4 bits (119), Expect = 3e-09
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNN-WFYGEVNGTTGAFPMSYVQ 129
+++ DI+ + R D + W YGE +G G FP SY +
Sbjct: 16 EISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 50.2 bits (120), Expect = 3e-09
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+++F V + K ++ W+Y G P Y+ +D N
Sbjct: 24 EISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDEN 65
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 49.6 bits (119), Expect = 3e-09
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDD-IVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
L+FK+ D I +L + + W YGE G FP SY ++
Sbjct: 24 LLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 49.5 bits (119), Expect = 4e-09
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
L + DIV + K W E TG P +V
Sbjct: 18 LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 57
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 51.2 bits (122), Expect = 4e-09
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
+L+ K+ DI+ IL +K W+ GE+ G G FP +YV+ D +
Sbjct: 21 ELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 49.6 bits (119), Expect = 4e-09
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIV-ILRR--KIDNNWFYGEVNGTTGAFPMSYVQI 130
+L F + DI+ IL + W+ ++G G P + +QI
Sbjct: 23 ELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 49.1 bits (118), Expect = 4e-09
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L F++ +I +I + + W+ GE+NG G FP ++
Sbjct: 22 ELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 48.9 bits (117), Expect = 6e-09
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
L+F + D++ +L + + W YGE + G FP SY ++
Sbjct: 23 LLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 48.8 bits (117), Expect = 6e-09
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 19 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 48.9 bits (117), Expect = 9e-09
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKID-NNWFYGEVNGTTGAFPMSYVQ 129
+L F DI+ + +ID + ++YGE+NG G P ++++
Sbjct: 30 ELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 52.1 bits (124), Expect = 9e-09
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56
+ + C +C + D K+ PC H C CL S + CP CR +
Sbjct: 324 LYCEMGSTFQLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQ-GCPFCRCEI 377
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 47.9 bits (115), Expect = 1e-08
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 17 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 48.4 bits (115), Expect = 1e-08
Identities = 12/59 (20%), Positives = 22/59 (37%)
Query: 7 NDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
+ + C++C L C C+ + S+ E RCP C ++ + P
Sbjct: 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSGP 71
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 48.2 bits (115), Expect = 1e-08
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
L + D+V + D ++YGE+ G G P +
Sbjct: 30 RLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 48.6 bits (116), Expect = 2e-08
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDNN-----WFYGEVN 140
DL+FKK + + + +W+ G +G P +YV ++ W++G++
Sbjct: 43 DLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQAEEWYFGKMG 98
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 47.6 bits (114), Expect = 2e-08
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
+L+ +K + + + K + W G G TG FP YV
Sbjct: 23 ELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 47.7 bits (114), Expect = 2e-08
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
+L + DD +++ + ++ W+ G G FP Y
Sbjct: 22 ELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 47.6 bits (114), Expect = 2e-08
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
+L ++ D V + ++ D+ WF G G FP +YV
Sbjct: 23 ELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 47.3 bits (113), Expect = 2e-08
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQIDNN 133
+L + DI+ + K + +W+YG + G G FP ++V +
Sbjct: 22 ELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL 64
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 47.3 bits (113), Expect = 2e-08
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIVILRRKIDNN---WFYGEVNGTTGAFPMSYVQI 130
+L+F+K DI+ + + W+ ++G G P + ++I
Sbjct: 19 ELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 47.2 bits (113), Expect = 3e-08
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVN--GTTGAFPMSYVQI 130
++F+ D ++ + ID+ W YG V G TG P +Y++
Sbjct: 23 VSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 129 QIDNNWFYGEVN--GTTGAFPMSYVQFV 154
ID+ W YG V G TG P +Y++FV
Sbjct: 36 PIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 47.2 bits (113), Expect = 3e-08
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
DL F+K D++ + +K D+ N+W+ G VNG G FP +YV
Sbjct: 19 DLPFRKGDVITILKKSDS---------------------QNDWWTGRVNGREGIFPANYV 57
Query: 152 QFV 154
+ V
Sbjct: 58 ELV 60
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 47.2 bits (112), Expect = 3e-08
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
+ C +C+D + C H FC +CL + + + CP CR
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCR 63
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 47.3 bits (113), Expect = 3e-08
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNG-TTGAFPMSYVQI 130
L F + ++ K W+ G+ FP +YV+
Sbjct: 24 LTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 46.9 bits (112), Expect = 3e-08
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 11 ECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
C +CL+ + TS VLPC H + C EE++ RCP C
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY--RCPLCS 50
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 47.3 bits (113), Expect = 3e-08
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQI 130
L + DIV + K W E TG P +V
Sbjct: 22 LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 61
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 46.8 bits (112), Expect = 3e-08
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
L + DD +++ + ++ W+ G G FP Y
Sbjct: 20 LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 46.9 bits (112), Expect = 4e-08
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGA-FPMSYVQ 129
+L F K I+ K + W+ G+ G FP +YV+
Sbjct: 22 ELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 47.0 bits (112), Expect = 4e-08
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVN--GTTGAFPMSYVQ 129
+L F+K D+V IL + +W+ + + G G ++
Sbjct: 33 ELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALR 73
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 46.4 bits (111), Expect = 5e-08
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L + +I+ +++ + W GE+NG G FP ++V+
Sbjct: 17 ELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 46.4 bits (111), Expect = 5e-08
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTG-AFPMSYVQ 129
+L F K I+ K D W+ G+ G FP +YV+
Sbjct: 19 ELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 47.2 bits (112), Expect = 5e-08
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFY-GEVNGTTGAFPMSYVQ 129
+L FK+ I+ + D + FY GE G P + V
Sbjct: 41 ELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVS 79
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 46.6 bits (111), Expect = 6e-08
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
L+F + D++ +L + + W YGE G FP SY ++
Sbjct: 24 LLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 49.6 bits (117), Expect = 6e-08
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
L + ++V + + + + GE NG G FP ++V++
Sbjct: 255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL 293
Score = 41.1 bits (95), Expect = 5e-05
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 150 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 47.6 bits (113), Expect = 7e-08
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGA---FPMSYVQIDN 132
+L+ + + + D WF + G P+SYV+I +
Sbjct: 19 ELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID 62
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 47.4 bits (112), Expect = 7e-08
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYVQI 130
L+ + D+V ++ +W+ G + G FP S++ I
Sbjct: 75 QLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHI 115
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 46.7 bits (111), Expect = 7e-08
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 2 DEWTLNDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
E + LEC VC + L S + LPC H F C+ + H CP CR
Sbjct: 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD--SCPVCR 59
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 46.0 bits (109), Expect = 9e-08
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
+ C +C+D + C H FC +CL + + + CP CR
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCR 58
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 45.9 bits (109), Expect = 1e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
T+ D +C C L S K C H FC+ C+ ++SS +C C+
Sbjct: 11 TVEDKYKCEKCHLVL-CSPKQTECGHRFCESCMAALLSSSSP-KCTACQ 57
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 49.2 bits (116), Expect = 1e-07
Identities = 18/104 (17%), Positives = 34/104 (32%)
Query: 27 PCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFPLVVSFIRF 86
+ E ++ + + V + + + +
Sbjct: 190 HGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPC 249
Query: 87 FLNILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+ L + DIV + R N + GEVNG G FP ++V+I
Sbjct: 250 AYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 293
Score = 40.8 bits (94), Expect = 7e-05
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV-NGTTGAFPMSYVQ 129
DL FKK +I+++ K + W+ +G G P+ YV+
Sbjct: 141 DLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVE 179
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 45.5 bits (108), Expect = 1e-07
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIV-SSHKELRCPEC 52
+ C +CLD L + C H FC KC+ +I +S +CP C
Sbjct: 21 VICPICLDIL-QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 46.0 bits (109), Expect = 1e-07
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGT------TGAFPMSYVQI 130
LN + D++ + + + + G ++ + G FP V++
Sbjct: 35 ALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV 79
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 45.6 bits (108), Expect = 1e-07
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
C +C + V C+H FC+ C E + RC C
Sbjct: 16 FRCFICRQAF-QNPVVTKCRHYFCESCALEHFRATP--RCYICD 56
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 45.3 bits (108), Expect = 2e-07
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYG-EVNGTTGAFPMSYVQ 129
DL FKK +I+++ K + W+ + G G P +Y++
Sbjct: 26 DLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 45.4 bits (108), Expect = 2e-07
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 92 DLNFKKDDIV-ILRR---KIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+ + + IL + W+ EVNG G P +Y++
Sbjct: 29 ELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIR 70
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 44.8 bits (106), Expect = 2e-07
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 9 LLECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
++ C +C+D + C H FC +CL + + + CP CR
Sbjct: 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCR 51
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 45.0 bits (107), Expect = 2e-07
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
+++F K D+ I+ ++++ W + G V+
Sbjct: 24 EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63
Score = 33.0 bits (76), Expect = 0.007
Identities = 4/28 (14%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 129 QIDNNWFYGEV--NGTTGAFPMSYVQFV 154
++++ W + G V+ V
Sbjct: 38 ELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 45.0 bits (107), Expect = 2e-07
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
DL+F K + + + +W+ G TG P +YV
Sbjct: 31 DLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 48.0 bits (113), Expect = 2e-07
Identities = 7/65 (10%), Positives = 21/65 (32%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLL 69
L C + + C H F + ++ + + CP+ + + + ++
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241
Query: 70 MRILE 74
+
Sbjct: 242 ELRCK 246
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 44.7 bits (106), Expect = 3e-07
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNG-----TTGAFPMSYVQI 130
L+ ++++ +K + W+ GE+ G FP S+V++
Sbjct: 24 LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 46.6 bits (110), Expect = 3e-07
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
L EC +CL L + PC H FCK C+ + + +CP + ++L
Sbjct: 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGH-KCPVDNEI--LLENQLF 69
Query: 65 PNVLLMRILEGLF 77
P+ R + L
Sbjct: 70 PDNFAKREILSLM 82
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 44.1 bits (105), Expect = 3e-07
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
L+ K + + +L + W + G P +Y+ N
Sbjct: 21 TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 44.1 bits (105), Expect = 4e-07
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIVILRRKID-NNWFYGEVN-GTTGAFPMSYVQI 130
+L+FK D + + D W G ++ G G +P +YV+
Sbjct: 19 ELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 44.2 bits (105), Expect = 4e-07
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYV 151
+L+F + I+ + K + Q D+ ++ GE NG G FP V
Sbjct: 24 ELSFPEGAIIRILNKEN--------------------QDDDGFWEGEFNGRIGVFPSVLV 63
Query: 152 QFV 154
+ +
Sbjct: 64 EEL 66
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 44.6 bits (106), Expect = 4e-07
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 7 NDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP 64
+ C +C + LPC H F K C+ + CP CR P
Sbjct: 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVCRC-------MFP 88
Query: 65 PNV 67
P +
Sbjct: 89 PPL 91
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 44.0 bits (104), Expect = 4e-07
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+ V + + W+ G NG G FP +YV
Sbjct: 17 ELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54
Score = 33.6 bits (77), Expect = 0.003
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 130 IDNNWFYGEVNGTTGAFPMSYVQ 152
+ W+ G NG G FP +YV
Sbjct: 32 CSDGWWRGSYNGQIGWFPSNYVL 54
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 46.6 bits (110), Expect = 5e-07
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 89 NILDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ-IDNN 133
+L F++ D + + D NW+ G +G TG FP +YV ++ N
Sbjct: 171 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRN 216
Score = 45.4 bits (107), Expect = 1e-06
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGE 138
+L+FK+ DI+ +L + D NW+ E+NG G P +Y+++ + ++
Sbjct: 16 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFG 63
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 43.7 bits (104), Expect = 5e-07
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
+L KK D++ + R+ + W G++ G P +Y++
Sbjct: 17 ELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 43.8 bits (104), Expect = 6e-07
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPM 148
+L KK DIV + R + W ++ G P +Y+ T P+
Sbjct: 19 ELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT--------PYKDTRNTVPV 69
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 43.5 bits (103), Expect = 6e-07
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHK-ELRCPEC 52
CSVCL+ L ++ C H FCK C+ + + CP C
Sbjct: 16 ASCSVCLEYL-KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 44.0 bits (104), Expect = 7e-07
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNN 133
+LNF+K + VI + + D W+ + G G P +YV + ++
Sbjct: 33 ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 77
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 45.1 bits (106), Expect = 8e-07
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELP- 64
L CS C + L C H +C CL I+SS + C C +
Sbjct: 28 LEAKYLCSACRNVL-RRPFQAQCGHRYCSFCLASILSSGPQ-NCAACVHEGIYEEGISIL 85
Query: 65 ------PNVLLMRILEGL 76
P+ R +E L
Sbjct: 86 ESSSAFPDNAARREVESL 103
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 43.4 bits (103), Expect = 8e-07
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
+L K D V IL K +W+ ++ +G +G P +++
Sbjct: 22 ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 63
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 43.5 bits (102), Expect = 8e-07
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 7 NDLLECSVCLDRLDTSSK---VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
D +EC +C++ L+ C + C+ C I + + CP CR
Sbjct: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACR 57
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 43.5 bits (103), Expect = 9e-07
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDN 132
DL+F K + + +W+ G TG P +YV +
Sbjct: 22 DLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 42.9 bits (102), Expect = 1e-06
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEV--NGTTGAFPMSYVQI 130
+L K D V IL K +W+ ++ +G +G P +++
Sbjct: 18 ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 42.8 bits (101), Expect = 1e-06
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV--NGTTGAFPMSYVQ 129
+++F K D+ I+ ++++ W + G V+
Sbjct: 22 EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 43.0 bits (102), Expect = 1e-06
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
+L+ KD+++ + W +G G P + + +
Sbjct: 23 ELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEAS 63
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 42.6 bits (101), Expect = 1e-06
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
+L + + + + W G +G P + ++ +
Sbjct: 23 ELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 44.1 bits (104), Expect = 1e-06
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPP 65
+ C +C L C+H FC+ C+ + CP CR D P
Sbjct: 20 FVKSISCQICEHILADP-VETSCKHLFCRICILRCLKVMGS-YCPSCRYPCF-PTDLESP 76
Query: 66 NVLLMRILEGL 76
+ IL L
Sbjct: 77 VKSFLNILNSL 87
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 43.1 bits (102), Expect = 1e-06
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDN 132
DL+F K + + + +W+ G TG P Y+ +
Sbjct: 21 DLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 42.8 bits (101), Expect = 1e-06
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 5 TLNDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDE 62
LN C+VCL+ ++ PC+H F +KCL + + K CP C + V ++ +
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLCNMPV-LQLAQ 67
Query: 63 LPP 65
L
Sbjct: 68 LSG 70
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 42.6 bits (101), Expect = 1e-06
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDD-IVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL F K D + I+ D NW+ + G G P +YVQ
Sbjct: 27 DLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 42.6 bits (101), Expect = 2e-06
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL +K D + + + W+ NG G P +YV
Sbjct: 24 DLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 42.3 bits (100), Expect = 2e-06
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 93 LNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
L + +I+ + + W G+ G G P YV+I
Sbjct: 27 LTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEI 66
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 41.9 bits (99), Expect = 3e-06
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 92 DLNFKKDDI--VILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNN 133
+LNF+K + VI + + D W+ + G G P +YV + ++
Sbjct: 22 ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 42.5 bits (100), Expect = 3e-06
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 11 ECSVCLDRLDTSS--KVLPCQHTFCKKCLEEIVSSH------KELRCPECRVLVECKVDE 62
C +CL + CQ FC CL++ V + CP+ C
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA----ACPKQG 62
Query: 63 LPPNVLLMRILE 74
+ ++
Sbjct: 63 HLQENEIECMVA 74
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 41.8 bits (99), Expect = 3e-06
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDN 132
DL ++ I+ K D +W+ G+ G P +YV
Sbjct: 18 DLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 43.6 bits (102), Expect = 4e-06
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
DL F++ + + + K + +W+ GTTG P +YVQI
Sbjct: 134 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI 173
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 42.2 bits (99), Expect = 5e-06
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIVILRRKIDNNWFY-GE-VNGTTGAFPMSYVQI 130
+L + + +D + FY GE ++G G P ++V
Sbjct: 39 ELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDF 79
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 41.2 bits (97), Expect = 5e-06
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 92 DLNFKKDDIVILRRKID-----NNWFYGEV-NGTTGAFPMSYVQI 130
++ KK D++ + K D ++W+ NG G P +Y++I
Sbjct: 24 EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 44.4 bits (103), Expect = 5e-06
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDD-IVILRRKIDNNWFYGEV-NGTTGAFPMSYVQI 130
+L+FK D + + + + W G + NG G +P +YV+
Sbjct: 444 ELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEA 484
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 41.2 bits (97), Expect = 6e-06
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 92 DLNFKKDDIVILRRKID-----NNWFYGEV-NGTTGAFPMSYVQI 130
++ KK D++ + K D ++W+ NG G P +Y++I
Sbjct: 31 EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 41.3 bits (97), Expect = 7e-06
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 93 LNFKKDDIVILRRK----IDNNWFYGEV--NGTTGAFPMSYVQIDNNWFYGEVNGTTG 144
L D + + W YG G +G P +Y+ + +G++G
Sbjct: 33 LELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSSG 90
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 41.4 bits (97), Expect = 8e-06
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 92 DLNFKKDDIVILRRKI-----DNNWFYGEV-NGTTGAFPMSYVQ 129
+L ++ D V + + D W+ G++ +G G FP +YV
Sbjct: 45 ELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 41.3 bits (97), Expect = 9e-06
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 92 DLNFKKDDIV-ILRRKIDNN---WFYGEVNG-TTGAFPMSYVQI 130
+++F+ D++ + ++ W ++G TTG P +YV+I
Sbjct: 33 EISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKI 76
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 40.8 bits (96), Expect = 9e-06
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
+++F++++I+ + I+ W+ NG TG P +YVQ+
Sbjct: 23 EISFEQNEILQVS--DIEGRWWKARRANGETGIIPSNYVQL 61
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 40.4 bits (95), Expect = 1e-05
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 92 DLNFKKDDIVILRRKIDNNW--------FYGEVNGTTGAFPMSYVQ 129
++ KK DI+ L + +W G+ G P +YV+
Sbjct: 17 EVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 41.4 bits (96), Expect = 1e-05
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 20/75 (26%)
Query: 11 ECSVCLDRLDTSS-----------------KVLPCQHTFCKKCLEEIVSS---HKELRCP 50
+C +C+++L +S ++ C H F CL + + L+CP
Sbjct: 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86
Query: 51 ECRVLVECKVDELPP 65
C+ + K P
Sbjct: 87 SCKTIYGEKTGTQPW 101
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 40.6 bits (95), Expect = 2e-05
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 92 DLNFKKDDIVILRRKID-----NNWFYGE-VNGTTGAFPMSYVQI 130
++ KK D++ + K D ++W+ NG G P +Y++I
Sbjct: 31 EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 40.1 bits (94), Expect = 2e-05
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 9/50 (18%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE---------VNGTTGAFPMSYVQIDN 132
DL+F+ D + + W+ G P +YV D+
Sbjct: 23 DLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS 72
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 40.1 bits (94), Expect = 2e-05
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDN 132
DL+F+K D +++ + W+ G P +YV +
Sbjct: 41 DLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD 82
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 39.7 bits (93), Expect = 2e-05
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
+L + D+ L + +W+ + NG G P SY+
Sbjct: 36 ELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 39.6 bits (92), Expect = 3e-05
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYG--EVNGTTGAFPMS 149
DL D++++ R E W G E G FP +
Sbjct: 27 DLELLPGDVLVVSRAALQALGVAE--------GGERCPQSVGWMPGLNERTRQRGDFPGT 78
Query: 150 YVQFV 154
YV+F+
Sbjct: 79 YVEFL 83
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 39.3 bits (92), Expect = 4e-05
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
+L ++++ L + +W+ + NG G P SY+
Sbjct: 35 ELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLV 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 41.3 bits (96), Expect = 4e-05
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
+ E + + C++C L C C+ + S+ E RCP C
Sbjct: 172 IRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 224
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 39.2 bits (91), Expect = 4e-05
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYG--EVNGTTGAFPMSYVQ 129
L DIV + + + ++NW+ G G FP + V
Sbjct: 34 FLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 38.8 bits (91), Expect = 5e-05
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQI 130
++ + + + ++ + W G G P SY+++
Sbjct: 23 TISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 38.4 bits (89), Expect = 6e-05
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 93 LNFKKDDIV-ILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129
L DIV + + + ++NW+ G G FP + V
Sbjct: 27 LRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 39.8 bits (92), Expect = 7e-05
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 10 LECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECK 59
+ C +C+D + C H FC +CL + S CP CR + K
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNANTCPTCRKKINHK 61
Score = 34.0 bits (77), Expect = 0.006
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSK------VLPCQHTFCKKCLEEIVSSHKELRCPECR 53
+ + + C +C+D + C H FC +CL + + + CP CR
Sbjct: 64 HPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCR 120
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 37.5 bits (88), Expect = 8e-05
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 93 LNFKKDDIVILRRKIDNNW---FYGEVNGTTGAFPMSYVQI 130
+ D + L + + + G TG P +Y++I
Sbjct: 18 ITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 37.9 bits (88), Expect = 1e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 2 DEWTLNDLLECSVCLDRLDTSSKVLPCQHT-FCKKCLEEIVSSHKELRCPECRVLVECKV 60
E + + +C VC + + +LPC+HT C C++ +CP CR V+
Sbjct: 8 VEPSEENSKDCVVCQNG-TVNWVLLPCRHTCLCDGCVKYFQ------QCPMCRQFVQESF 60
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 37.8 bits (88), Expect = 1e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVN 117
++ KK DI+ L + +W+ EVN
Sbjct: 37 EVTMKKGDILTLLNSTNKDWWKVEVN 62
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 37.8 bits (88), Expect = 1e-04
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTT----GAFPMSYVQIDNN 133
F++ + + + N W+Y ++ G P +Y++ N+
Sbjct: 25 TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS 70
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 37.7 bits (88), Expect = 1e-04
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 11 ECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECRVLVE 57
+C++CL L+ V LPC H F + C+++ + ++K +CP CRV +E
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPICRVDIE 62
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 37.7 bits (88), Expect = 1e-04
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDNN 133
+L ++ +++ ++ +W G G P Y+Q +
Sbjct: 29 ELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTS 72
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 37.7 bits (88), Expect = 1e-04
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 22/62 (35%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQ 152
+ ++ D+V++ ++ D W YGE +G TG FP + +
Sbjct: 34 VTLQQADVVLVLQQEDG-WLYGER---------------------LRDGETGWFPEDFAR 71
Query: 153 FV 154
F+
Sbjct: 72 FI 73
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 37.2 bits (87), Expect = 1e-04
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129
DL+FKK + + + + W+ + + G P +YV
Sbjct: 23 DLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVA 61
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 39.9 bits (92), Expect = 1e-04
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE-VNGTTGAFPMSYVQ 129
DL FKK DI+ +R K + W+ E G G P+ YV+
Sbjct: 152 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 190
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 37.4 bits (87), Expect = 1e-04
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGT-----TGAFPMSYVQ 129
+L+F+ D+ + RK + W+ ++ G P +Y+
Sbjct: 26 ELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 36.9 bits (86), Expect = 2e-04
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129
DL F+K + + + + W+ + G G P ++V
Sbjct: 22 DLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVA 60
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 37.3 bits (87), Expect = 2e-04
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 7 NDLLECSVCLDRLDTSSKV--LPCQHTFCKKCLEEIVSSHKELRCPECR 53
++ C VC+ ++ + LPC H F KC+++ + +++ CP CR
Sbjct: 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR--TCPICR 67
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 36.9 bits (85), Expect = 2e-04
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 8 DLLECSVCLDRLDTSSK----VLPCQHTFCKKCLEEIVSSHKELRCPECRVLV 56
D C C + V C HT C+ C++ + CPEC +
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAG-NCPECGTPL 53
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 38.3 bits (88), Expect = 5e-04
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGT--TGAFPMSYVQ 129
++ + DI+ + + + G TG +P V+
Sbjct: 458 EIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVR 497
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 38.4 bits (89), Expect = 5e-04
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN 133
L FK D++ + + W++G V G FP S+V++ N
Sbjct: 47 LGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN 87
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 37.8 bits (87), Expect = 5e-04
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEV---NGTTGAFPMSYVQI 130
L+ + D+V ++ +W+ G + G FP S++ I
Sbjct: 33 QLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHI 73
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 38.2 bits (89), Expect = 6e-04
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNN-----WFYGEVN 140
L+ K + + +L + W + G P +Y+ N+ W++G V+
Sbjct: 59 TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVS 113
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 35.9 bits (83), Expect = 6e-04
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 6 LNDLLECSVCLDRLDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECRVLVECKV 60
L + C +C+DR + + +PC H CK+C E + +CP C ++ K
Sbjct: 22 LQEEKLCKICMDR-NIAIVFVPCGHLVTCKQCAEAVD------KCPMCYTVITFKQ 70
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 36.2 bits (84), Expect = 6e-04
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDNN----WFYGEVN 140
DL+F+K D +++ + W+ G P +YV ++ G
Sbjct: 19 DLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSGGGTSGGGRHR 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 35.9 bits (83), Expect = 6e-04
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 5 TLNDLLECSVCLDRLDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECRVLVECKV 60
L + + C VC + + +S PC HT C+ C ++ CP CR VE
Sbjct: 14 KLKEAMLCMVCCEE-EINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEHVQ 63
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 37.4 bits (85), Expect = 8e-04
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 18/66 (27%)
Query: 92 DLNFKKDDIVI-----LRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAF 146
+L K D+V+ + D W G V+ + + ++ G F
Sbjct: 158 ELQLKAGDVVLVIPFQNPEEQDEGWLMG-------------VKESDWNQHKKLEKCRGVF 204
Query: 147 PMSYVQ 152
P ++ +
Sbjct: 205 PENFTE 210
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 36.0 bits (82), Expect = 0.001
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 12 CSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLM 70
C C + +++PC+H FC C + CP C V+ ++++ L M
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDK-MCPGCSDPVQ-RIEQCTRGSLFM 60
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 36.2 bits (83), Expect = 0.001
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 18/65 (27%)
Query: 93 LNFKKDDIVIL-----RRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFP 147
L K D+V++ + D W G V+ + + E+ G FP
Sbjct: 61 LQLKAGDVVLVIPFQNPEEQDEGWLMG-------------VKESDWNQHKELEKCRGVFP 107
Query: 148 MSYVQ 152
++ +
Sbjct: 108 ENFTE 112
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 34.4 bits (79), Expect = 0.001
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 7 NDLLECSVCLDRL-DTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECRVLVE 57
N L CS+C R D + H C C + + CP C+ ++
Sbjct: 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA--SCPICKKEIQ 55
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 34.1 bits (79), Expect = 0.002
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 6 LNDLLECSVCLDRLDTSSKV--LP-CQHTFCKKCLEEIVSSHKELRCPECR 53
++D +EC+VCL L+ + LP C H F +C++ + SH CP CR
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCR 50
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 36.3 bits (84), Expect = 0.002
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNW 134
+L F K I+ + K D +W+ GEV+G G FP +YV++ +
Sbjct: 18 ELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDM 60
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 34.4 bits (79), Expect = 0.003
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+ KK++ + L W TG P +YV+
Sbjct: 47 ELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVE 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.003
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 21/117 (17%)
Query: 2 DEWTLNDL-LECSVCLDRLDTS-SKVLPCQHTFCKKCLEEIVSSHKELRCPECRVL---- 55
+ N L C + L + L T L+ + E + L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-THISLDHHSMTLTP---DEVKSLLLKY 310
Query: 56 VECKVDELPPNVLLMRILEGLFPLVVSFI----RFFLNILDLNFKKDDIVILRRKID 108
++C+ +LP VL P +S I R L D N+K + L I+
Sbjct: 311 LDCRPQDLPREVL------TTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIE 360
Score = 29.8 bits (66), Expect = 0.38
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 38/160 (23%)
Query: 29 QHTFCKKCLEEIVSSHKELRCPECRVL-VECKVDELPPNVL----LMRIL------EGLF 77
+H C K I SS L E R + V PP+ L+ ++ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 78 PLVVSFIRFFL-------------NI-LDLNFKKDDIVILRRKIDNNWFYGEVNGTTGAF 123
+V ++ L +I L+L K ++ L R I +++ + +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 124 PMSYVQIDNNWF----Y----GEVNGTTGAFPMSYVQFVW 155
P +D ++ + E F M ++ F +
Sbjct: 466 P---PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Score = 27.1 bits (59), Expect = 3.4
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 32/121 (26%)
Query: 2 DEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKEL----RCPECRVLVE 57
+N L + S+ + S+ +P + K LE + H+ + P+
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF---- 459
Query: 58 CKVDELPPNV-----------LLMRILEGLFPLVVSFIRFFLNILDLNFKKDDIVILRRK 106
D +PP + L L F F LD F L +K
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL---FRMVF---LDFRF-------LEQK 506
Query: 107 I 107
I
Sbjct: 507 I 507
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 33.8 bits (78), Expect = 0.003
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDN 132
+L+ KK++ + L + W TG P +YV+ N
Sbjct: 23 ELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN 63
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 34.0 bits (78), Expect = 0.004
Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQ 129
F++ + + + + W+ G P V
Sbjct: 33 PPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVA 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 35.6 bits (81), Expect = 0.005
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 16/72 (22%)
Query: 11 ECSVCLDRLDTSSKV-------LPCQHTFCKKCLEE---------IVSSHKELRCPECRV 54
C++C +V C CLEE +CP C+
Sbjct: 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369
Query: 55 LVECKVDELPPN 66
+ L +
Sbjct: 370 KLSTSFAALLND 381
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 33.8 bits (77), Expect = 0.005
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSH----KELRCPE--CRVLVECKVDEL 63
C + + + K C HT+ + + ++ S K+ CP+ C + + +L
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCS-HTDIRKSDL 66
Query: 64 PPNVLLMRILE 74
+ L R +E
Sbjct: 67 IQDEALRRAIE 77
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 32.9 bits (75), Expect = 0.006
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 6 LNDLLECSVCLDR-LDTSSKVLPCQHTF-CKKCLEEIVSSHKELRCPECRVLVE 57
LN + C +C R + H C C +++ +K CP CR ++
Sbjct: 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK--PCPVCRQPIQ 56
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 33.6 bits (76), Expect = 0.007
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 7 NDLLECSVCLDRLDTSSKVLPC----QHTFCKKCLEEIVSSH---KELRCPEC 52
+ L C++C +RL+ + V C H FC C E + + E+ CP
Sbjct: 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 33.1 bits (75), Expect = 0.008
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYG--EVNGTTGAFPMS 149
D++ DI+ + + + + + W G E G G FP +
Sbjct: 21 DIDLHLGDILTVNKGSLVALGFSD--------GQEARPEEIGWLNGYNETTGERGDFPGT 72
Query: 150 YVQFV 154
YV+++
Sbjct: 73 YVEYI 77
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 32.6 bits (75), Expect = 0.008
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI---DNNWFY 136
+L+ KK++ + L W TG P +YV+ ++ +
Sbjct: 20 ELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKLEHHHHHH 67
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 32.7 bits (75), Expect = 0.008
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQ 129
+L+ K+ D++ + W + G G P + +
Sbjct: 24 ELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILT 61
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 34.1 bits (77), Expect = 0.014
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 93 LNFKKDDIVILRRK-----IDNNWFYG--EVNGTTGAFPMSYVQI 130
L+F K D++IL +++ W G E G FP V +
Sbjct: 593 LSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYV 637
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 31.5 bits (72), Expect = 0.019
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGEVNGTTGAFPMSYVQI 130
+L+ KDD++ + W +G +G P + + I
Sbjct: 17 ELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 33.8 bits (75), Expect = 0.019
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 4 WTLNDLLECSVCLDRLDTSSKVLPCQH-TFCKKCLEEIVSSHKELRCPECRVLVECKV 60
L + C VC+D+ + S +PC H C++C + +CP CR +++ V
Sbjct: 290 RRLQEERTCKVCMDK-EVSVVFIPCGHLVVCQECAPSLR------KCPICRGIIKGTV 340
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 31.4 bits (71), Expect = 0.027
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 12 CSVCLDRLDTSSKVL---PCQHTFCKKCLEEIVSSHKELRCPECR 53
C C V+ C H+F C+ V + RCP C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLCQ 71
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 31.5 bits (71), Expect = 0.036
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 91 LDLNFKKDDIVILRRKID----NNWFYGEVNGTTGAFPMSYVQ 129
LD++ + D+V + +K D N + + T G S+++
Sbjct: 32 LDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLK 74
>1hcx_A Major autolysin; choline-binding domain, cell WALL attachment; HET:
TPT DDQ; 2.6A {Streptococcus pneumoniae} SCOP: b.109.1.1
PDB: 1gvm_A* 2bml_A*
Length = 127
Score = 31.9 bits (73), Expect = 0.038
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY-GEVNGT--TGAFPMSYVQFVWY 156
KI + W+Y G TG +V+ + W+Y G + AF S WY
Sbjct: 52 KIADKWYYFNEEGAMKTG-----WVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWY 102
Score = 27.7 bits (62), Expect = 0.90
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TG 144
KI+ W+Y + +G + D NW++ + +G TG
Sbjct: 10 KINGTWYYFDSSGYMLADRW---RKHTDGNWYWFDNSGEMATG 49
Score = 27.3 bits (61), Expect = 1.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TG 144
+ D NW++ + +G TG + +I + W+Y G TG
Sbjct: 31 KHTDGNWYWFDNSGEMATG-----WKKIADKWYYFNEEGAMKTG 69
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A
{Streptococcus pneumoniae} SCOP: b.109.1.1
Length = 95
Score = 30.7 bits (70), Expect = 0.052
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY-GEVNGT--TGAFPMSYVQFVWY 156
KI + W+Y G TG +V+ + W+Y G + AF S WY
Sbjct: 20 KIADKWYYFNEEGAMKTG-----WVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWY 70
Score = 27.3 bits (61), Expect = 0.88
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 108 DNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TG 144
D NW++ + +G TG + +I + W+Y G TG
Sbjct: 2 DGNWYWFDNSGEMATG-----WKKIADKWYYFNEEGAMKTG 37
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 32.2 bits (72), Expect = 0.052
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKE--LRCPECRVLVECKVDELPPNV 67
L+C + R+ SK + C+H C L + S + +CP C+ ++ ++ L +
Sbjct: 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQ--IDIALENLAISE 307
Query: 68 LLMRILE 74
+ IL+
Sbjct: 308 FVDDILQ 314
>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex,
bacter toxin; HET: GLA GAL NAG; 2.00A {Clostridium
difficile}
Length = 255
Score = 32.1 bits (73), Expect = 0.058
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 106 KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNG 141
ID +Y N T Y I++ FY +G
Sbjct: 30 TIDGKKYY--FNTNTSIASTGYTIINDKHFYFNTDG 63
Score = 29.7 bits (67), Expect = 0.33
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 106 KIDNNWFYGEVNG---TTGAFPMSYVQIDNNWFY 136
ID +Y E N G Y IDN FY
Sbjct: 122 TIDGRRYYFEPNTAIGANG-----YKIIDNKNFY 150
Score = 29.0 bits (65), Expect = 0.64
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 105 RKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFY 136
R ID +Y N T + ID +Y
Sbjct: 8 RTIDGKKYY--FNTNTAEAATGWQTIDGKKYY 37
Score = 28.6 bits (64), Expect = 0.85
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY 136
+ N +Y N TG + I+ N +Y
Sbjct: 192 LHLLGNIYYFGNNSKAVTG-----WQTINGNMYY 220
Score = 28.2 bits (63), Expect = 1.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNG 141
+ +N +Y N TG +V ID +Y E N
Sbjct: 101 LYLHDNIYYFGNNSKAATG-----WVTIDGRRYYFEPNT 134
Score = 25.9 bits (57), Expect = 6.0
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 106 KIDNNWFY------GEVNGTTGAFPMS--YVQIDNNWFYGEVNGT--TG 144
K N + Y N A ++ + N +Y N TG
Sbjct: 162 KGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTG 210
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 32.4 bits (74), Expect = 0.060
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 92 DLNFKKDDIVILRRKIDNNWF-YGEVNGTTGAFPMSYVQIDNN-----WFYGEVN 140
DL+F+K D +++ + W G P +YV ++ WF+ ++
Sbjct: 24 DLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGIS 78
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium
difficile}
Length = 332
Score = 31.7 bits (72), Expect = 0.087
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 106 KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGT 142
I+ +Y N T Y I FY +G
Sbjct: 111 TINGKKYY--FNTNTSIASTGYTIISGKHFYFNTDGI 145
Score = 29.4 bits (66), Expect = 0.44
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 105 RKIDNNWFYGEVNG---TTGAFPMSYVQIDNNWFYGEVNG 141
R ID +Y N TG + I+ +Y N
Sbjct: 89 RTIDGKKYYFNTNTAVAVTG-----WQTINGKKYYFNTNT 123
Score = 29.0 bits (65), Expect = 0.71
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 105 RKIDNNWFYGEVNG---TTGAFPMSYVQIDNNWFY 136
ID N +Y E N G Y IDN FY
Sbjct: 202 VTIDGNRYYFEPNTAMGANG-----YKTIDNKNFY 231
Score = 28.6 bits (64), Expect = 0.75
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY 136
I+ FY +G G + N + Y
Sbjct: 18 TSINGKHFYFNTDGIMQIG-----VFKGPNGFEY 46
Score = 28.6 bits (64), Expect = 0.85
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNG 141
+ +N +Y N TG +V ID N +Y E N
Sbjct: 182 LYLHDNIYYFGNNSKAATG-----WVTIDGNRYYFEPNT 215
Score = 26.7 bits (59), Expect = 3.7
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 10/49 (20%)
Query: 106 KIDNNWFY--------GEVNGTTGAFPMSYVQIDNNWFYGEVNGT--TG 144
K N + Y + G + ++ ++ +Y + TG
Sbjct: 39 KGPNGFEYFAPANTDANNIEGQAILYQNKFLTLNGKKYYFGSDSKAVTG 87
Score = 26.3 bits (58), Expect = 4.6
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 7/34 (20%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY 136
I FY +G G + + + Y
Sbjct: 131 TIISGKHFYFNTDGIMQIG-----VFKGPDGFEY 159
Score = 26.0 bits (57), Expect = 6.6
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 8/39 (20%)
Query: 106 KIDNNWFY------GEVNGTTGAFPMS--YVQIDNNWFY 136
K N + Y N A ++ + +Y
Sbjct: 243 KGSNGFEYFAPANTDANNIEGQAIRYQNRFLHLLGKIYY 281
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 30.4 bits (68), Expect = 0.090
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 18/63 (28%)
Query: 93 LNFKKDDIVILRRKI---DNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGTTGAFPMS 149
L + +V + K+ ++ G V G +YG++ G FP S
Sbjct: 39 LTIHRGQVVYVFSKLKGRGRLFWGGSVQGD---------------YYGDLAARLGYFPSS 83
Query: 150 YVQ 152
V+
Sbjct: 84 IVR 86
>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme,
pneumococcal cell WALL degradation, hydrolase,
glycosidase, multimodular; HET: NAG AMV; 1.69A
{Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB:
2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A
Length = 339
Score = 31.5 bits (71), Expect = 0.092
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 105 RKIDNNWFYGEVNG---TTGAFPMSYVQIDNNWFYGEVNGT--TGAFPMSYVQFVWY 156
KI W+Y + G T+ +++ + W+Y + NG TG V WY
Sbjct: 224 EKIGGVWYYFDSKGYCLTSE-----WLKDNEKWYYLKDNGAMATGWV---LVGSEWY 272
Score = 30.3 bits (68), Expect = 0.27
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TG 144
K + W+Y + NG TG +V + + W+Y + +G TG
Sbjct: 246 KDNEKWYYLKDNGAMATG-----WVLVGSEWYYMDDSGAMVTG 283
Score = 30.0 bits (67), Expect = 0.28
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 106 KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNG---TTGAFPMSYVQFVWY 156
+ W++ + +I W+Y + G T+ WY
Sbjct: 204 QDSKGWWF--RRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWL---KDNEKWY 252
Score = 30.0 bits (67), Expect = 0.33
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY 136
+ + W+Y + +G TG +V+ NNW+Y
Sbjct: 266 LVGSEWYYMDDSGAMVTG-----WVKYKNNWYY 293
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Length = 209
Score = 31.2 bits (70), Expect = 0.10
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 18 RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVL 68
L T+ L + ++ + S E++CP+ KV + P L
Sbjct: 157 LLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQPEFL 207
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA,
exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A
{Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Length = 179
Score = 30.8 bits (69), Expect = 0.13
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 1 MDEWTLNDLLECSVCLD--RLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVEC 58
+ D+L+ V D RL T + + C C E+V L+CPEC + +
Sbjct: 109 SEAVGYLDILKARVIGDNLRLSTKEEEMGVLRALCSNCKTEMVREGDILKCPECGRVEKR 168
Query: 59 KV 60
K+
Sbjct: 169 KI 170
>2f6e_A Toxin A; beta solenoid, C-terminal repetitive domain, crops; 1.85A
{Clostridium difficile}
Length = 127
Score = 30.5 bits (69), Expect = 0.13
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 105 RKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGT--TGAF 146
+ I+ N +Y + A +ID ++ V+G G +
Sbjct: 85 QTINGNMYYFMPDTA-MAAAGGLFEIDGVIYFFGVDGVKAPGIY 127
Score = 27.0 bits (60), Expect = 1.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY 136
+ N +Y N TG + I+ N +Y
Sbjct: 65 LHLLGNIYYFGNNSKAVTG-----WQTINGNMYY 93
Score = 27.0 bits (60), Expect = 1.8
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 106 KIDNNWFY--------GEVNGTTGAFPMSYVQIDNNWFY 136
K N + Y + G + ++ + N +Y
Sbjct: 35 KGPNGFEYFAPANTDANNIEGQAIRYQNRFLHLLGNIYY 73
Score = 25.1 bits (55), Expect = 7.6
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 18/63 (28%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY-----GEVNGTTGAFPMSYVQFV---- 154
IDN FY NG G F + N + Y + N G +F+
Sbjct: 16 IIDNKNFYFR-NGLPQIGVF-----KGPNGFEYFAPANTDANNIEGQAIRYQNRFLHLLG 69
Query: 155 -WY 156
Y
Sbjct: 70 NIY 72
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus
pneumoniae}
Length = 94
Score = 29.5 bits (67), Expect = 0.14
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNG 141
+++ +W+Y NG+ + Q+ W+Y +G
Sbjct: 40 QVNGSWYYLNSNGSMKVNQW----FQVGGKWYYVNTSG 73
Score = 28.7 bits (65), Expect = 0.33
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNG 141
+ + W++ +G+ TG +VQ++ +W+Y NG
Sbjct: 20 QENGMWYFYNTDGSMATG-----WVQVNGSWYYLNSNG 52
Score = 28.0 bits (63), Expect = 0.52
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 107 IDNNWFYGEVNG--TTGAFPMSYVQIDNNWFYGEVNGT--TG 144
+ ++ + TTG + Q + W++ +G+ TG
Sbjct: 1 MGHHHHHHAKAVAPTTG-----WKQENGMWYFYNTDGSMATG 37
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 31.2 bits (70), Expect = 0.15
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TGAFPMSYVQFVWY 156
++ +Y E +G G + + N+W++ + +G+ G + WY
Sbjct: 460 EVAGQHYYLEDSGAMKQG-----WHKKANDWYFYKTDGSRAVGWI---KDKDKWY 506
Score = 30.4 bits (68), Expect = 0.22
Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNG 141
K N+W++ + +G+ G +++ + W++ + NG
Sbjct: 480 KKANDWYFYKTDGSRAVG-----WIKDKDKWYFLKENG 512
Score = 30.0 bits (67), Expect = 0.29
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TG 144
K W+Y + G TG +++ +Y E +G G
Sbjct: 440 KDKETWYYMDSTGVMKTG-----EIEVAGQHYYLEDSGAMKQG 477
Score = 30.0 bits (67), Expect = 0.33
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TG 144
+ W+Y +G G +V+ W+Y + G TG
Sbjct: 420 QYMGQWYYFAPSGEMKMG-----WVKDKETWYYMDSTGVMKTG 457
Score = 30.0 bits (67), Expect = 0.37
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 106 KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGT--TGAFPMSYVQFVWY 156
K +N+WFY +G A ++ +ID W+Y G + WY
Sbjct: 360 KWNNHWFYLTDSG---ASAKNWKKIDGIWYYFNKENQMEIG---WVQDKEQWY 406
Score = 29.3 bits (65), Expect = 0.64
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 106 KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGT 142
+I+ W+Y G + + +N+WFY +G
Sbjct: 339 EIEGEWYYFNQTGILLQN--QWKKWNNHWFYLTDSGA 373
Score = 28.9 bits (64), Expect = 0.73
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT--TG 144
+ W+Y +V+G+ TG ++Q W+Y +G G
Sbjct: 400 QDKEQWYYLDVDGSMKTG-----WLQYMGQWYYFAPSGEMKMG 437
Score = 25.8 bits (56), Expect = 8.2
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 107 IDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNGT 142
NW+Y + T G + + + +I+ W+Y G
Sbjct: 318 AYGNWWYQAPDST-GEYAVGWNEIEGEWYYFNQTGI 352
>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A
{Streptococcus pneumoniae} PDB: 2v04_A 2x8m_A* 2x8o_A*
2x8p_A* 2vyu_A
Length = 311
Score = 30.9 bits (70), Expect = 0.16
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNG 141
KID +Y G G Y++I + +
Sbjct: 27 HKIDGKTYYFGDIGEMVVGWQ---YLEIPGTGYRDNLFD 62
Score = 30.5 bits (69), Expect = 0.22
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 106 KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNG 141
+ W+Y ++ G + + N W+Y +G
Sbjct: 216 YVRGKWYY--LDNKNGDMKTGWQYLGNKWYYLRSSG 249
Score = 30.2 bits (68), Expect = 0.28
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGT 142
+ +Y + N TG ++ D NW+Y G
Sbjct: 111 LSAEKRTYYFDNNYAVKTG-----WIYEDGNWYYLNKLGN 145
Score = 28.6 bits (64), Expect = 0.85
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 106 KIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNG 141
+ W+Y +N G + Q++ W+Y +G
Sbjct: 257 QDGLTWYY--LNAGNGDMKTGWFQVNGKWYYAYSSG 290
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 106 KIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFY 136
K++ W+Y +G+ TG + + W+Y
Sbjct: 196 KVNGKWYYFGSSGSMATG-----WKYVRGKWYY 223
Score = 27.5 bits (61), Expect = 2.1
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNG 141
R W+Y + +G T + +++ W+Y +G
Sbjct: 175 RSKPAPWYYLDASGKMLTD-----WQKVNGKWYYFGSSG 208
Score = 27.1 bits (60), Expect = 2.7
Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 7/38 (18%)
Query: 106 KIDNNWFYGEVNG--TTGAFPMSYVQIDNNWFYGEVNG 141
+I + + + + W+Y +G
Sbjct: 50 EIPGTGYRDNLFDNQPVN-----EIGLQEKWYYFGQDG 82
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 30.9 bits (70), Expect = 0.19
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDN-----NWFYGEVN 140
DL+FKK + + + + +W+ G TG P +YV + W++G++
Sbjct: 18 DLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKIT 73
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 30.8 bits (69), Expect = 0.22
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 106 KIDNNWFYGEVNG--TTGAFPMSYVQIDNNWFYGEVNGT--TGAFPMSYVQ 152
K D +Y + +G V + + NG + +F S +
Sbjct: 974 KTDAGTYYYDGDGRMVRN----QTVSDGAMTYVLDENGKLVSESFDSSATE 1020
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.27
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 33 CKKCLEEIVSSHK--ELRCPEC-RVLVECKVDELP 64
CK +IV ++ C C VL + VD
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRS 61
Score = 25.8 bits (56), Expect = 6.4
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 46 ELRCPECR 53
L CPEC+
Sbjct: 21 VLTCPECK 28
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 30.0 bits (67), Expect = 0.34
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 103 LRRKIDNNWFY-GEVNGT--TGAFPMSYVQIDNNWFY 136
LR+ + Y G G +V I +Y
Sbjct: 26 LRQDSNGKLRYFDLTTGIQAKG----QFVTIGQETYY 58
Score = 30.0 bits (67), Expect = 0.41
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 7/43 (16%)
Query: 106 KIDNNWFY-GEVNGT--TGAF----PMSYVQIDNNWFYGEVNG 141
K D+ FY G + Y+ D Y +
Sbjct: 129 KYDDKLFYFESGKGNLVSTVAGDYQDGHYISQDGQTRYADKQN 171
Score = 28.5 bits (63), Expect = 1.1
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 11/54 (20%)
Query: 105 RKIDNNWFYGEVNGT--TGAFPMSYVQIDNNWFYGEVNGTTGAFPMSYVQFVWY 156
+ W Y + N T G I+ + + TG Y
Sbjct: 86 QDTKTAWVYRDQNNTILKGL-----QNINGTLQF--FDPYTGE--QLKGGVAKY 130
Score = 28.1 bits (62), Expect = 1.4
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 105 RKIDNNWFY-GEVNGT--TGAFPMSYVQIDNNWFY 136
+ I+ + G G + D+ FY
Sbjct: 106 QNINGTLQFFDPYTGEQLKGGV----AKYDDKLFY 136
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 29.6 bits (67), Expect = 0.42
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 92 DLNFKKDDIV-ILRRKIDNNWFYGE-VNGTTGAFPMSYVQIDN-----------NWFYGE 138
DL F K D++ I+ D NW+ + G G P +YVQ WF+G+
Sbjct: 27 DLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGK 86
Query: 139 VN 140
+
Sbjct: 87 IT 88
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural
genomics, PSI-2, protein structure initiative; NMR
{Escherichia coli} SCOP: g.41.18.1
Length = 101
Score = 28.0 bits (62), Expect = 0.65
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVEC 58
L C C LD + H C+ C E I + CP+C ++
Sbjct: 33 LHCPQCQHVLDQDN-----GHARCRSCGEFIE---MKALCPDCHQPLQV 73
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 28.7 bits (64), Expect = 0.84
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 92 DLNFKKDDIVILRRKIDNNWFYGE--VNGTTGAFPMSYVQIDNN-----WFYGEVN 140
DL+FKK + + + + +W+ G TG P +YV ++ W++G++
Sbjct: 101 DLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKIT 156
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 27.4 bits (60), Expect = 1.0
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECR 53
C C V H C CL ++S RCP C+
Sbjct: 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSN--RCPICK 68
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 28.3 bits (63), Expect = 1.2
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 1 MDEWTLNDLLECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPEC----RVLV 56
+ + D L + + L + P T+ +K +EE + R R
Sbjct: 200 RKKRDIPDYLCGKISFE-LMREPCITPSGITYDRKDIEEHLQ-----RVGHFNPVTR--S 251
Query: 57 ECKVDELPPNVLL 69
++L PN+ +
Sbjct: 252 PLTQEQLIPNLAM 264
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3
hydrolase desumoylating enzyme, cysteine protease; 1.60A
{Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A
2hl8_A 2hl9_A
Length = 221
Score = 27.8 bits (61), Expect = 1.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 75 GLFPLVVSFIRFFLNILDLNFKKDDIVILRRKI 107
G++ V + L+F D + +RR I
Sbjct: 181 GIY--VCMNTLYGSADAPLDFDYKDAIRMRRFI 211
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix
degradation; HET: MSE; 1.54A {Pseudoalteromonas
carrageenovora} SCOP: b.29.1.2
Length = 271
Score = 27.9 bits (62), Expect = 1.5
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 83 FIRFFLNILDLNFKKDDIVILRRKIDNNWFYGEVN-GTTGAFPMSYVQIDNNWFYGEVNG 141
I +++ D ++ DN +++ ++N + + Q N FY N
Sbjct: 203 KITWYV---------DGEIVGE--KDNLYWHRQMNLTLSQGLRAPHTQWKCNQFYPSANK 251
Query: 142 TTGAFPMSY 150
+ FP S
Sbjct: 252 SAEGFPTSM 260
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
nucleus, phosphorylation, chromatin regulator, UBL
conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
sapiens}
Length = 159
Score = 27.1 bits (60), Expect = 1.7
Identities = 4/53 (7%), Positives = 9/53 (16%), Gaps = 9/53 (16%)
Query: 26 LPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKVDELPPNVLLMRILEGLFP 78
+ H P + P ++ + P
Sbjct: 1 MGSSHHHHHHS---------SGLVPRGSTSYGIQKGNQPEGSMVFTVSRDSLP 44
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase,
glycosidase, choline-binding protein; 1.61A
{Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Length = 468
Score = 27.7 bits (61), Expect = 1.8
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 105 RKIDNNWFYGEVNGTTGAFPMSYVQIDNNWFYGEVNG--TTGAFPMSYVQFVWYL 157
+ I N W+Y + G M+ Q ++F +YL
Sbjct: 123 QLIGNKWYYFKKWGY-----MAKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFYL 172
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 27.2 bits (59), Expect = 2.8
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKE---LRCPECRVLVECKVDELPPN 66
L C + RL + + C H C + +++ CP C + + L +
Sbjct: 216 LMCPLGKMRLTIPCRAVTCTHLQC-FDAALYLQMNEKKPTWICPVCD--KKAAYESLILD 272
Query: 67 VLLMRILEGL 76
L M IL
Sbjct: 273 GLFMEILNDC 282
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 25.2 bits (55), Expect = 3.1
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 11 ECSVCLDRLDTSSKVLPC------QHTFCKKCLEEIVSSHKELRCPECR 53
+C C + + C H C K K+ +CP C
Sbjct: 8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 27.1 bits (59), Expect = 3.2
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 93 LNFKKDDIVILRRKIDNNWFYGEVNGTTGAF 123
++F+ D + ++ K +N+W+ G +
Sbjct: 62 ISFEAKDFLHVKEKFNNDWWIGRLVKEGCEI 92
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein,
structural genomics, PSI-2, protein structure
initiative; NMR {Salmonella typhimurium LT2}
Length = 81
Score = 25.7 bits (56), Expect = 3.3
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 10 LECSVCLDRLDTSSKVLPCQHTFCKKCLEEIVSSHKELRCPECRVLVEC 58
+ C VC L+ + C+ C ++ + CP+CR ++
Sbjct: 3 ITCPVCHHALERNG-----DTAHCETCAKDF---SLQALCPDCRQPLQV 43
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 26.1 bits (56), Expect = 4.8
Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 2/59 (3%)
Query: 3 EWTLNDLLECSVCLDRLDTSSKV-LPCQHTFCKKCLEEIVSSHKELRCPECRVLVECKV 60
C L S + L C CK C + C C + K+
Sbjct: 65 HLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH-PEEQGWLCDPCHLARVVKI 122
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol
protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A
2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Length = 238
Score = 26.3 bits (57), Expect = 5.5
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 75 GLFPLVVSFIRFFLNILDLNFKKDDIVILRRKI 107
G+F + +NF + + R+++
Sbjct: 198 GMF--ACKYADCITKDRPINFTQQHMPYFRKRM 228
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 25.9 bits (57), Expect = 6.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 93 LNFKKDDIVILRRKIDNNWF 112
L+F+ D++ + D W+
Sbjct: 23 LSFRFGDVLHVIDAGDEEWW 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.470
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,648,579
Number of extensions: 155064
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 362
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.9 bits)