BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9679
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E+ I Y + E EL + G +IYV KK DDGWY+G + G TGLFP ++VES
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVESI 72
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+R + Y E E+ R GD I + DDGW GT+QRTGRTG+ PA+++E
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
R+R + Y E E+ + GD I ++ DDGW GT++RTG TG+ PA++VE+
Sbjct: 5 RYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
P+ + + + + + Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++FV
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFV 59
Query: 120 ESF 122
+
Sbjct: 60 KEL 62
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T + FR + Y E+ + GD I + D+GW GT+QRTGRTG+ PA++VE+
Sbjct: 1 TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
++ + Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP ++V+
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
++ + Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP ++V+
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++FV
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFV 53
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 4/53 (7%)
Query: 69 RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
RC V Y P ++ ELEL+VGD+I V + ++GW++G L G+TG+FP++F+
Sbjct: 9 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFI 59
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+R + Y P +E ELELR GD + V ++ DDGW+ G +RT + G FP ++V
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
Y P ++ ELEL+VGD+I V + ++GW++G L G+TG+FP++F++
Sbjct: 26 SYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKEL 73
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
+ + Y P +E ELEL VGD+I V ++ ++GW+ GTL + GLFP++FV+
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNN--KLGLFPSNFVKEL 59
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
FR + + P + EL + GD+IY+ D W+KGT + GRTGL P+++V
Sbjct: 17 FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSK--GRTGLIPSNYV 66
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
+ + + + EL L GD++ +H+K+++GW+ G+L G+ G FPA++VE
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVEEL 62
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + S EL L+ GD++Y+HK+ D W +G + GR G+FPA++VE
Sbjct: 5 RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 54
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + S EL L+ GD++Y+HK+ D W +G + GR G+FPA++VE
Sbjct: 11 RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 60
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
FR + + P + EL GD+IY+ D W+KGT + GRTGL P+++V
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYV 59
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
FR + + P + EL GD+IY+ D W+KGT + GRTGL P+++V
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYV 55
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
V+ RF + +E EL + GD+IYV + + GW++GTL GRTG FP+++V
Sbjct: 13 VKARFN----FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYV 62
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
R + +E EL GD+I+V + + GW++GTL GRTG FP+++V
Sbjct: 12 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLN--GRTGWFPSNYV 60
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + NS+ EL + GD+I++ + + W +GT++ G TG+FP SFV+
Sbjct: 20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 71
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + NS+ EL + GD+I++ + + W +GT++ G TG+FP SFV+
Sbjct: 6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + E EL R G+ I + +K ++ WY+G + TGR G+FPAS+V+
Sbjct: 26 FKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + NS+ EL + GD+I++ + + W +GT++ G TG+FP SFV+
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 227
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + P +E EL + GD+I + + D+ WY+G L G++G FP ++VE
Sbjct: 15 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GQSGFFPINYVE 64
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y + EL+L+ G+ I V K DGW KG TGRTG+FP+ +V
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 10 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYV----HKKRDDGWYKGTLQRTGRTGLFPASFV 119
E + I PY P ++ ELEL GD I++ +GW GT TG +GL P +++
Sbjct: 17 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 74
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + P +E EL + GD+I + + D+ WY+G L G +G FP ++VE
Sbjct: 11 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINYVE 60
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
P + + + + P ++ EL R GDLI + + D+ WY+G L G++G FP S+V+
Sbjct: 10 PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLH--GQSGFFPLSYVQ 66
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
P + + +R I Y S E+ L GD++ V +K + GW+ Q + G PASF+E
Sbjct: 7 PIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLE 63
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
P + + +R I Y S E+ L GD++ V +K + GW+ Q + G PASF+E
Sbjct: 8 PIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLE 64
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 7 RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYYA 57
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + EL L+ GD++Y++K+ D WY+G + GR G+FP +++E
Sbjct: 11 RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRTYIE 60
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ +R + Y + EL+L GD++ V + +DGW+ T++R G+ G P S++E
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYLE 61
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
R + +E EL GD+I+V + + GW++GT GRTG FP+++V
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 58
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + P +LE+R GD+I + + ++ W+KG +Q R G FPA+FV+
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQD--RIGFFPANFVQ 60
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
R + +E EL GD+I+V + + GW++GT GRTG FP+++V
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 58
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y N+E EL G LI V K D W++G + G TGLFP+++V
Sbjct: 27 YAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYV 70
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
R + +E EL GD+I+V + + GW++GT GRTG FP+++V
Sbjct: 8 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 56
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 59 QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
+ VP + + + P + EL R GD I+V D W+KG G+TG+FP ++
Sbjct: 152 EQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNY 209
Query: 119 V 119
V
Sbjct: 210 V 210
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
P P + + +R I Y S E+ L GD++ V +K + GW+ Q + G P
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIP 59
Query: 116 ASFVE 120
ASF+E
Sbjct: 60 ASFLE 64
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y + EL + VG++I +K D GW++G Q GR GLFP +FV
Sbjct: 9 DYQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFV 53
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
P P + + +R I Y S E+ L GD++ V +K + GW+ Q + G P
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIP 59
Query: 116 ASFVE 120
ASF+E
Sbjct: 60 ASFLE 64
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y N+E EL G LI V K D W++G + G TGLFP+++V+
Sbjct: 43 YAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--GVTGLFPSNYVK 87
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
+ + + P + EL R GD I+V D W+KG G+TG+FP ++V +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTA 56
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 81 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
EL+ VGD I + +DGW +G+L+ GRTG+FP FV+
Sbjct: 29 ELDFEVGDKIRILATLEDGWLEGSLK--GRTGIFPYRFVK 66
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + + P + EL R GD I+V D W+KG G+TG+FP ++V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + + P + EL R GD I+V D W+KG G+TG+FP ++V
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 52
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + + P + EL R GD I+V D W+KG G+TG+FP ++V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ V +R + + P ++ EL L GD++++ K GW + +TGL P FV
Sbjct: 1 MAIVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 65 RERFRCIVPYP--PNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + R IV Y S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F+E
Sbjct: 4 KSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + P ++ EL + GD+I + + D+ WY+G + G +G FP ++VE
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 61 VPTVRERFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPAS 117
VPT RE + Y EL L++GD +++ + + GWY+G TL++ + G+FPAS
Sbjct: 5 VPTKREEKYGVAFYNYDARGADELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFPAS 63
Query: 118 FV 119
++
Sbjct: 64 YI 65
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFV 119
++ + I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +FV
Sbjct: 9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 63
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVE 120
++ + I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +FV+
Sbjct: 3 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 58
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + Y + +L+ GD+I + ++ D+ WY+G + G +G+FPAS VE
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVE 60
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVE 120
+ I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +FV+
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 62
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFV 119
+ I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +FV
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
+ + + Y + EL + GD I VH+K GW++G L G+ G PA++V+
Sbjct: 6 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQDI 59
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 69 RCIVPYP--PNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R IV Y S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F+E
Sbjct: 4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
+ + + Y + EL + GD I VH+K GW++G L G+ G PA++V+
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQDI 58
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
R R + Y + EL + GD L + ++ + GW +G L +G+ GL+PA++VE+
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD-SGQLGLYPANYVEAI 60
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E + + P + +L L+ GD + + +K WYKG+ GRTG+FPA++V+
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVK 55
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E R + + P ++ EL++ G++++V KK +D W T+ G+ GL P +++E
Sbjct: 8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNW--ATVMFNGQKGLVPCNYLE 60
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 81 ELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVE 120
EL LR GD++ ++ + D GW+KG + GR G FP+++VE
Sbjct: 23 ELSLREGDVVRIYSRIGGDQGWWKG--ETNGRIGWFPSTYVE 62
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ +++ E+ R G+ I + ++ D+ WY+G + T R G+FP ++V+
Sbjct: 16 FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 71 IVPYPPNS--EYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
IV Y ++ + EL +RVG++I V K +++GW +G L GR G+FP +FV+
Sbjct: 5 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVKEI 57
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ +++ E+ R G+ I + ++ D+ WY+G + T R G+FP ++V+
Sbjct: 15 FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
R R + + + EL + G+LI V D W++G R TGLFP++FV +
Sbjct: 7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRG--TGLFPSNFVTT 59
>pdb|2GQI|A Chain A, Solution Structure Of The Sh3 Domain Of Human Ras Gtpase-
Activating Protein 1
Length = 71
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 67 RFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R R I+PY P+++ E+ GD+ VH + +DGW T RT GL VE
Sbjct: 9 RVRAILPYTKVPDTD-EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+R + + P ++ EL L GD++++ K GW + +TGL P FV
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 71 IVPYPPNS--EYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
IV Y ++ + EL +RVG++I V K +++GW +G L GR G+FP +FV+
Sbjct: 4 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVKEI 56
>pdb|2J05|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J05|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.5 Angstrom
Resolution
pdb|2J06|A Chain A, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
pdb|2J06|B Chain B, Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom
Resolution
Length = 65
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 65 RERFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
R R R I+PY P+++ E+ GD VH + +DGW T RT GL VE
Sbjct: 5 RRRVRAILPYTKVPDTD-EISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEE 62
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y ++ EL G +I V K D W+KG + +G+ GLFP+++V+
Sbjct: 11 YTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVK 55
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPA 116
P T + R+ + EL L+ GD+I + +KK GW++G + GR G FP+
Sbjct: 2 PGTFGTAKARY----DFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPS 55
Query: 117 SFVE 120
++VE
Sbjct: 56 NYVE 59
>pdb|4FSS|A Chain A, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|B Chain B, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
pdb|4FSS|C Chain C, Crystal Structure Of A Ras P21 Protein Activator (Rasa1)
From Homo Sapiens At 2.25 A Resolution
Length = 62
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 65 RERFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
R R R I+PY P+++ E+ GD VH + +DGW T RT GL VE
Sbjct: 2 RRRVRAILPYTKVPDTD-EISFLKGDXFIVHNELEDGWXWVTNLRTDEQGLIVEDLVEE 59
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + Y +LE + GD+I V K ++ W +G + G+ G+FP FVE
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEG--ESKGKVGIFPKVFVE 58
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
R R + Y EL + GD L + + + GW KG L G+ GL+PA++VE+
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYVEA 484
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + + P EL + GD+I + K D W++G L R G+FP+++V
Sbjct: 8 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 56
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ Y + E+ D+I + DDGW++G + GR GLFPA++VE
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 70
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ Y + E+ D+I + DDGW++G + GR GLFPA++VE
Sbjct: 15 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 63
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y + E+ D+I + DDGW++G + GR GLFPA++VE
Sbjct: 18 YQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 62
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + + P EL + GD+I + K D W++G L R G+FP+++V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNN--RRGIFPSNYV 54
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
+ Y N EL + GD+I V K ++ W+ G++ + G+ G FPA+ V S
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANHVAS 61
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFV 119
+ + Y + EL LR GD + V + D+GW+ G L +GR G+FP+++V
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP-SGRVGVFPSNYV 87
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + + P EL + GD+I + K D W++G L R G+FP+++V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYV 54
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
I + P + E+ + GD+I V DG+ KG ++ GRTGL+P+
Sbjct: 447 AIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPS 493
>pdb|1WIE|A Chain A, Solution Structure Of The First Sh3 Domain Of Kiaa0318
Protein
Length = 96
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 77 NSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
N E EL L G +YV+ D DG+Y+G L G+ GL P++FV+
Sbjct: 35 NPEAELPLTAGKYLYVYGDMDEDGFYEGEL-LDGQRGLVPSNFVD 78
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 81 ELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVE 120
+L R GD+I + KK D + W+ G + GR G+FPA++VE
Sbjct: 19 DLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVE 58
>pdb|1PNJ|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
pdb|2PNI|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
Length = 86
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 9 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTGER 68
Query: 112 GLFPASFVE 120
G FP ++VE
Sbjct: 69 GDFPGTYVE 77
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 112 GLFPASFVE 120
G FP ++VE
Sbjct: 67 GDFPGTYVE 75
>pdb|1PHT|A Chain A, Phosphatidylinositol 3-Kinase P85-Alpha Subunit Sh3
Domain, Residues 1-85
Length = 85
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 112 GLFPASFVE 120
G FP ++VE
Sbjct: 67 GDFPGTYVE 75
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y E EL L G + V +K DGW++G+ G+ G FP+++V
Sbjct: 8 AYVAEREDELSLVKGSRVTVMEKCSDGWWRGSY--NGQIGWFPSNYV 52
>pdb|1PKS|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
pdb|1PKT|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
Length = 79
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 112 GLFPASFVE 120
G FP ++VE
Sbjct: 67 GDFPGTYVE 75
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 69 RCIVPYPPNSE---YELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
RC YP + E L G+LI + + D GW++G + G G FPAS+V+
Sbjct: 5 RCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGE-KEDGLRGWFPASYVQ 58
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y E EL L G + V +K DGW++G+ G+ G FP+++V
Sbjct: 13 YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYV 56
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y + EL D I + DD W+ G L++ G GLFP+++V
Sbjct: 10 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + +P N +L + G+++ + +K ++ W+ + GR G+ P +VE
Sbjct: 126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSAR-NKDGRVGMIPVPYVEKL 181
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y + EL D I + DD W+ G L++ G GLFP+++V
Sbjct: 9 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + +P N +L + G+++ + +K ++ W+ + GR G+ P +VE
Sbjct: 126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSAR-NKDGRVGMIPVPYVEKL 181
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y + EL D I + DD W+ G L++ G GLFP+++V
Sbjct: 13 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + Y EL D+I + K+ GW+ G L+ G+ GLFP ++V
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNYV 57
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y E EL L G + V +K DGW++G+ G+ G FP+++V
Sbjct: 26 YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYV 69
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 81 ELELRVGDLIYVHKKRDD--GWYKGTLQRTGRTGLFPASFV 119
+L + GD I V K D W++G L+ G+TG+FPA++V
Sbjct: 33 DLNFQAGDRITVISKTDSHFDWWEGKLR--GQTGIFPANYV 71
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y E EL L G + V + DGW++G+ G+ G FP+++V
Sbjct: 9 AYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYN--GQIGWFPSNYV 53
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 77 NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
S EL L+ GD+IY+ ++ GW G L + G P ++++
Sbjct: 13 GSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 190
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 79 EYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ EL G + VH ++ GW +GTL G+TGL P ++VE
Sbjct: 24 DSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENYVE 64
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 15 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 70
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 192
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 190
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 81 ELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFV 119
+L + GD+I + KK D + W+ G + G+ G+FPA++V
Sbjct: 19 DLAFKKGDVITILKKSDSQNDWWTG--RTNGKEGIFPANYV 57
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 62 PTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFP 115
P+ E R + + P N E E+ L+ GDL+ + K RD W+K + G G P
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK-VRTKNGNIGYIP 69
Query: 116 ASFVE 120
+++E
Sbjct: 70 YNYIE 74
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 57
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASFVE 120
PT + + + Y E EL +I +K+D GW++G G+ L FP+++VE
Sbjct: 3 PTFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY--GGKKQLWFPSNYVE 60
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 62 PTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFP 115
P+ E R + + P N E E+ L+ GDL+ + K RD W+K + G G P
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK-VRTKNGNIGYIP 69
Query: 116 ASFVE 120
+++E
Sbjct: 70 YNYIE 74
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 59
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 57
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y + EL R GD++ +H++ W++G + G GL P ++
Sbjct: 18 AYTGRTAQELSFRRGDVLRLHERASSDWWRG--EHNGMRGLIPHKYI 62
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 59
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine
Exchange Factor (Gef) 16
Length = 79
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 81 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
E+ L+ D++ V ++ +DGW G R G TG FP F
Sbjct: 33 EVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFA 70
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
Length = 68
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 68 FRCIVPYPPNSEYELELRV--GDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFV 119
F+ + +P S+YE +L I V D WY G Q + G+FP SFV
Sbjct: 8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 75 PPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPASFVE 120
P N E E+ L+ GDL+ + K RD W+K + G G P +++E
Sbjct: 18 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWK-VRTKNGNIGYIPYNYIE 67
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 68 FRCIVPYPPNSEYELELRV--GDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFV 119
F+ + +P S+YE +L I V D WY G Q + G+FP SFV
Sbjct: 9 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 65
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 56
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGKRGMIPVPYVEKY 57
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 69 RCIVPYP--PNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
CI Y +E +L GD L V +D WYK + GR G+ PA++V+
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK-NKVGREGIIPANYVQ 66
>pdb|2RQR|A Chain A, The Solution Structure Of Human Dock2 Sh3 Domain - Elmo1
Peptide Chimera Complex
Length = 119
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 81 ELELRVGDLIYVHKKRDDGWYKGTL-QRTGRTGLFPASFV 119
+L L++GD++ + + D WY+G L + G+FP SF+
Sbjct: 75 QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFI 113
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S EL ++ GD++ + + W+K ++ GR G PA++++
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNGRQGFVPAAYLKKL 61
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TGRTG P+++V
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E R + + N + +L + GD++ + K ++ W+ G+ G+ P +VE
Sbjct: 2 EYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAE-DMDGKRGMIPVPYVE 55
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 69 RCIVPYP--PNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
CI Y +E +L GD L V +D WYK + GR G+ PA++V+
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK-NKVGREGIIPANYVQ 66
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
+E + Y S E+ ++ GD++ + + W+K ++ GR G PA++V+
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNGRQGFVPAAYVKKL 56
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 67 RFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+F +P S EL L+ GD++++ + GW L + G P +++
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 67 RFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+F +P S EL L+ GD++++ + GW L + G P +++
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K + GR G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVN--GRQGFVPAAYVKKL 61
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E++ + PY S+ E+ G + V +K +GW+ ++ G+ G PAS+++
Sbjct: 8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWW--YIRYLGKEGWAPASYLK 61
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 67 RFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+F +P S EL L+ GD++++ + GW L + G P +++
Sbjct: 5 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 58
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 70 CIVPYP--PNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
CI Y +E +L GD L V +D WYK + GR G+ PA++V+
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK-NKVGREGIIPANYVQ 66
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 81 ELELRVGDLIYVHKKRDDGWYKGTL-QRTGRTGLFPASFV 119
+L L++GD++ + + D WY+G L + G+FP SF+
Sbjct: 33 QLSLQIGDVVRIQETCGD-WYRGYLIKHKXLQGIFPKSFI 71
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
E F I Y E +L G+ I + ++ W+ G +R G G PA+ V
Sbjct: 8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWG--ERAGCCGYIPANHV 59
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 82 LELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPASFVE 120
L +R GD+I V ++ DG +KG + T R G FP VE
Sbjct: 36 LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVE 78
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PAS+V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPASYVKKL 61
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASFVE 120
T + + + Y E EL +I +K+D GW++G G+ L FP+++VE
Sbjct: 1 TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY--GGKKQLWFPSNYVE 57
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 60 PVPTVRERFRCIVPYPP-NSEYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPAS 117
P+ + R R + I + ++ L + GDLI + + DGW+ G ++T G FP S
Sbjct: 2 PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61
Query: 118 FV 119
+
Sbjct: 62 YT 63
>pdb|2EGE|A Chain A, Solution Structure Of The Third Sh3 Domain From Human
Kiaa1666 Protein
Length = 75
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 82 LELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
L LR GD++ V+ DD G+Y G L G GL PA ++
Sbjct: 31 LALRAGDVVMVYGPMDDQGFYYGEL--GGHRGLVPAHLLD 68
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 60
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG 109
++ + + ++ EL R GD+ +V +K + W+ L G
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAG 54
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 69 RCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + Y + E+ + GD I V + GW K TG TGL P +++
Sbjct: 5 KVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 15 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 72
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 60
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
+E + Y + E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 1 KELVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 56
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S EL ++ GD++ + + W+K ++ R G PA++++
Sbjct: 4 TGKELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWK--VEVNDRQGFIPAAYLKKL 61
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVADRQGFVPAAYVKKL 61
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 61
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 3 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ Y P + +L+LR GD ++ ++ + W++ + G+ G P+++V
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRAR-DKNGQEGYIPSNYV 61
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S EL ++ GD++ + + W+K ++ R G PA++++
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYLKKL 61
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ Y P + +L+LR GD ++ ++ + W++ + G+ G P+++V
Sbjct: 6 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRAR-DKNGQEGYIPSNYV 54
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASFVE 120
PT + + + Y E EL +I +K++ GW++G G+ L FP+++VE
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPSNYVE 60
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG------RTGLFPA 116
T +E + Y S E+ ++ GD++ + + W+K ++ T R G PA
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPA 63
Query: 117 SFVESF 122
++V+
Sbjct: 64 AYVKKL 69
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG------RTGLFPA 116
T +E + Y S E+ ++ GD++ + + W+K ++ T R G PA
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPA 63
Query: 117 SFVESF 122
++V+
Sbjct: 64 AYVKKL 69
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
++R + P+ +LEL GD++ V + + GW G +RT +
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 112 GLFPASFVE 120
G FP ++VE
Sbjct: 73 GDFPGTYVE 81
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
+E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 1 KELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAAYVKKL 56
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The P85beta
Subunit Of Phosphatidylinositol 3-Kinase From H.Sapiens,
Northeast Structural Genomics Consortium Target Hr5531e
Length = 88
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
++R + P+ +LEL GD++ V + + GW G +RT +
Sbjct: 8 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 67
Query: 112 GLFPASFVE 120
G FP ++VE
Sbjct: 68 GDFPGTYVE 76
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGYVPAAYVKKL 61
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA +V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVNDRQGFVPAGYVKKL 61
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++V+
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK--VEVGDRQGFVPAAYVKKL 61
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 4 FVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++++
Sbjct: 4 TGKELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWK--IEVNDRQGFVPAAYLKKL 61
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 18 FVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y +E +L G+ + + W++ TG TG P+ ++
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRT----GLFPA 116
T +E + Y S E+ ++ GD++ + + W+K ++ T G+T G PA
Sbjct: 4 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPA 63
Query: 117 SFVESF 122
++V+
Sbjct: 64 AYVKKL 69
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y P+ + +L G+ + + ++ + W+K TG+ G P +FV
Sbjct: 21 YEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 65
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y P+ + +L G+ + + ++ + W+K TG+ G P +FV
Sbjct: 21 YEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 65
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
T +E + Y S E+ ++ GD++ + + W+K ++ R G PA++++
Sbjct: 4 TGKELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWK--VEVDDRQGFIPAAYLKKL 61
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y P+ + +L G+ + + ++ + W+K TG+ G P +FV
Sbjct: 13 YEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 57
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 108
CI+ Y +E E E+R GDL+ + + Y G + RT
Sbjct: 240 CILAY---TENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y P+ + +L G+ + + ++ + W+K TG+ G P +FV
Sbjct: 15 YEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 59
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y P+ + +L G+ + + ++ + W+K TG+ G P +FV
Sbjct: 15 YEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 59
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
F + Y + +L + G+ + + W++ TG++G P+++V
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 108
CI+ Y +E E E+R GDL+ + + Y G + RT
Sbjct: 240 CILHY---TENECEMRDGDLVLIDAGCEYKGYAGAITRT 275
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y P+ + +L G+ + + ++ + W+K TG+ G P +FV
Sbjct: 9 YEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,303,418
Number of Sequences: 62578
Number of extensions: 103072
Number of successful extensions: 449
Number of sequences better than 100.0: 210
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 210
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)