Query psy9679
Match_columns 122
No_of_seqs 199 out of 1787
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 16:49:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 99.8 1E-18 2.2E-23 94.5 5.3 49 70-120 1-49 (49)
2 PF07653 SH3_2: Variant SH3 do 99.7 8.8E-17 1.9E-21 89.0 5.0 54 67-122 1-55 (55)
3 PF00018 SH3_1: SH3 domain; I 99.6 3.1E-16 6.8E-21 84.4 5.1 48 69-116 1-48 (48)
4 KOG1118|consensus 99.6 5.3E-16 1.2E-20 110.2 7.1 60 61-122 302-361 (366)
5 KOG0162|consensus 99.6 1.6E-15 3.6E-20 117.8 9.2 60 61-122 1047-1106(1106)
6 smart00326 SH3 Src homology 3 99.6 1.9E-14 4.1E-19 79.3 6.8 56 66-122 3-58 (58)
7 KOG2199|consensus 99.6 8.3E-16 1.8E-20 112.4 1.0 57 63-121 213-269 (462)
8 cd00174 SH3 Src homology 3 dom 99.5 5.2E-14 1.1E-18 76.6 6.3 52 68-120 2-53 (54)
9 KOG2070|consensus 99.5 4.9E-15 1.1E-19 111.0 2.7 56 65-122 17-72 (661)
10 KOG1029|consensus 99.5 1.8E-14 4E-19 112.5 4.0 55 65-121 1053-1107(1118)
11 KOG4225|consensus 99.4 5.6E-13 1.2E-17 98.7 7.9 56 67-122 434-489 (489)
12 KOG4226|consensus 99.4 4.6E-13 9.9E-18 94.3 6.8 54 66-121 108-161 (379)
13 KOG4225|consensus 99.4 2E-12 4.2E-17 95.8 8.2 56 65-122 230-285 (489)
14 KOG4348|consensus 99.3 5.1E-13 1.1E-17 99.2 1.3 58 63-122 98-155 (627)
15 KOG2996|consensus 99.3 1.9E-12 4.2E-17 99.0 3.6 57 63-121 803-861 (865)
16 KOG4348|consensus 99.3 2.6E-12 5.7E-17 95.4 3.5 56 65-122 261-318 (627)
17 KOG2856|consensus 99.2 5.9E-12 1.3E-16 91.7 3.8 56 66-122 415-471 (472)
18 KOG4226|consensus 99.2 1.1E-11 2.4E-16 87.4 3.6 58 64-122 190-249 (379)
19 KOG2546|consensus 99.2 6.5E-11 1.4E-15 87.6 6.6 55 66-122 424-478 (483)
20 KOG4792|consensus 99.2 4.7E-12 1E-16 87.1 0.5 56 65-121 124-179 (293)
21 KOG1702|consensus 99.2 4.3E-11 9.2E-16 81.2 4.4 58 65-122 207-264 (264)
22 KOG1029|consensus 99.1 2.1E-11 4.6E-16 95.7 2.2 56 65-122 693-750 (1118)
23 KOG1264|consensus 99.1 3.3E-11 7.1E-16 95.3 1.6 57 65-122 774-830 (1267)
24 KOG3655|consensus 99.1 3.7E-11 8E-16 89.9 1.0 58 64-122 426-483 (484)
25 KOG3523|consensus 99.0 1.4E-11 3E-16 94.5 -3.4 59 64-122 607-665 (695)
26 KOG0515|consensus 99.0 1.3E-10 2.9E-15 88.3 1.8 54 66-121 684-740 (752)
27 KOG3875|consensus 98.9 1E-10 2.2E-15 83.7 -0.8 57 66-122 269-330 (362)
28 KOG3601|consensus 98.8 3.8E-09 8.2E-14 72.1 2.9 57 63-121 161-217 (222)
29 KOG1843|consensus 98.7 7.5E-09 1.6E-13 76.6 2.0 54 66-121 417-472 (473)
30 KOG3775|consensus 98.6 1.6E-08 3.5E-13 74.3 2.1 58 65-122 262-319 (482)
31 KOG4278|consensus 98.6 1E-07 2.2E-12 74.9 5.2 55 65-121 90-145 (1157)
32 KOG2528|consensus 98.4 6.6E-08 1.4E-12 72.3 0.9 55 67-122 4-59 (490)
33 KOG3632|consensus 98.3 4.6E-07 9.9E-12 73.4 4.1 57 64-122 1137-1202(1335)
34 KOG4773|consensus 98.3 4.4E-08 9.6E-13 71.3 -1.7 57 63-121 173-229 (386)
35 KOG4792|consensus 98.3 5.8E-06 1.3E-10 57.4 8.0 55 65-121 227-283 (293)
36 KOG2222|consensus 98.2 1E-07 2.2E-12 72.5 -2.5 56 64-121 547-602 (848)
37 KOG3557|consensus 98.2 3.5E-07 7.5E-12 71.2 -0.2 56 64-121 499-554 (721)
38 KOG0197|consensus 98.1 7.7E-07 1.7E-11 67.8 0.8 57 65-121 11-68 (468)
39 KOG3771|consensus 98.1 8.3E-06 1.8E-10 61.7 6.0 59 59-119 394-453 (460)
40 KOG4429|consensus 98.1 1.1E-06 2.4E-11 63.0 0.8 54 66-121 364-417 (421)
41 KOG1451|consensus 98.0 8.4E-06 1.8E-10 63.4 4.4 56 65-122 756-812 (812)
42 KOG0609|consensus 98.0 1.5E-06 3.2E-11 66.7 0.3 55 65-119 214-278 (542)
43 KOG3725|consensus 97.8 3.2E-06 6.9E-11 59.8 -0.3 56 65-122 317-374 (375)
44 KOG4575|consensus 97.8 3.9E-05 8.5E-10 60.2 5.6 56 65-120 8-63 (874)
45 KOG3632|consensus 97.5 0.00078 1.7E-08 55.4 8.2 61 61-122 443-510 (1335)
46 KOG3601|consensus 97.4 1.4E-05 3E-10 54.8 -1.7 51 68-120 3-54 (222)
47 KOG3565|consensus 97.2 0.00047 1E-08 54.9 4.4 59 63-121 576-635 (640)
48 PF14603 hSH3: Helically-exten 97.2 0.00051 1.1E-08 40.9 3.3 41 78-119 29-69 (89)
49 KOG0199|consensus 97.2 0.00058 1.3E-08 54.9 4.4 52 69-120 378-430 (1039)
50 PF08239 SH3_3: Bacterial SH3 96.9 0.0023 5E-08 34.6 4.3 38 82-120 17-55 (55)
51 smart00287 SH3b Bacterial SH3 96.4 0.011 2.3E-07 32.7 4.7 37 82-119 25-61 (63)
52 KOG3812|consensus 96.0 0.0026 5.5E-08 47.0 0.9 50 67-116 60-117 (475)
53 KOG3705|consensus 95.9 0.0091 2E-07 45.2 3.3 55 67-121 511-565 (580)
54 PRK10884 SH3 domain-containing 95.4 0.024 5.3E-07 39.3 3.9 38 82-120 48-86 (206)
55 KOG0040|consensus 95.0 0.00029 6.3E-09 60.0 -7.6 55 65-121 968-1022(2399)
56 KOG2996|consensus 94.7 0.015 3.3E-07 45.9 1.2 42 80-121 625-667 (865)
57 PF06347 SH3_4: Bacterial SH3 94.6 0.11 2.4E-06 28.0 4.4 35 82-119 19-53 (55)
58 PRK13914 invasion associated s 92.5 0.27 5.8E-06 38.3 4.7 38 82-120 103-140 (481)
59 COG3103 SH3 domain protein [Si 91.9 0.4 8.7E-06 33.3 4.6 38 82-120 48-86 (205)
60 smart00743 Agenet Tudor-like d 91.8 0.33 7.2E-06 26.6 3.4 24 83-106 2-25 (61)
61 PF11302 DUF3104: Protein of u 90.0 0.51 1.1E-05 27.4 3.1 24 82-105 4-33 (75)
62 KOG4384|consensus 86.7 2.2 4.8E-05 31.9 5.3 57 63-121 134-192 (361)
63 PF12913 SH3_6: SH3 domain of 81.7 5.4 0.00012 21.6 4.2 34 81-116 20-54 (54)
64 KOG3580|consensus 71.3 8.1 0.00018 31.4 4.3 51 66-116 505-562 (1027)
65 PRK13545 tagH teichoic acids e 58.6 15 0.00032 29.5 3.6 36 86-122 374-414 (549)
66 PF05641 Agenet: Agenet domain 56.0 18 0.00038 20.2 2.8 23 84-106 1-26 (68)
67 KOG1314|consensus 50.7 18 0.00038 27.5 2.7 39 79-118 331-378 (414)
68 KOG3416|consensus 49.2 8.9 0.00019 24.6 0.9 33 82-114 60-92 (134)
69 PF03894 XFP: D-xylulose 5-pho 49.0 0.69 1.5E-05 31.3 -4.3 38 78-116 51-89 (179)
70 PRK03187 tgl transglutaminase; 44.2 32 0.00069 25.0 3.1 36 70-105 146-190 (272)
71 cd05705 S1_Rrp5_repeat_hs14 S1 40.7 68 0.0015 18.0 4.3 30 84-115 1-32 (74)
72 PF00575 S1: S1 RNA binding do 40.0 47 0.001 18.2 2.9 33 84-118 2-36 (74)
73 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 40.0 53 0.0012 18.8 3.3 32 84-117 4-37 (86)
74 COG3807 Uncharacterized protei 34.7 50 0.0011 22.0 2.7 22 92-115 136-157 (171)
75 smart00333 TUDOR Tudor domain. 31.0 84 0.0018 16.2 3.7 21 84-105 3-23 (57)
76 PF07828 PA-IL: PA-IL-like pro 30.1 47 0.001 21.0 1.9 16 80-95 16-31 (121)
77 COG3097 Uncharacterized protei 28.4 1E+02 0.0023 18.7 3.1 25 77-101 26-50 (106)
78 PF08121 Toxin_33: Waglerin fa 24.7 36 0.00079 14.4 0.5 7 10-16 13-19 (22)
79 cd04454 S1_Rrp4_like S1_Rrp4_l 24.5 1.4E+02 0.0031 16.8 4.1 33 85-119 5-39 (82)
80 cd05699 S1_Rrp5_repeat_hs7 S1_ 24.2 1.5E+02 0.0033 17.0 4.5 27 92-119 8-34 (72)
81 PF08460 SH3_5: Bacterial SH3 23.2 1.5E+02 0.0032 16.5 3.6 34 81-115 28-64 (65)
82 CHL00141 rpl24 ribosomal prote 22.2 1E+02 0.0022 18.1 2.3 19 81-99 6-24 (83)
83 PF15505 DUF4648: Domain of un 21.2 57 0.0012 21.7 1.2 38 69-106 2-39 (170)
84 PRK12281 rplX 50S ribosomal pr 21.2 1.1E+02 0.0024 17.6 2.3 18 82-99 5-22 (76)
85 COG0186 RpsQ Ribosomal protein 21.0 1.8E+02 0.0039 17.4 3.2 22 73-95 46-67 (87)
86 smart00739 KOW KOW (Kyprides, 20.4 97 0.0021 13.3 2.3 14 84-97 2-15 (28)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.76 E-value=1e-18 Score=94.55 Aligned_cols=49 Identities=49% Similarity=0.892 Sum_probs=45.1
Q ss_pred EeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679 70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 70 al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
|+|+|.++.++||+|++||+|.|+.+.+++||.|++ +|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence 789999999999999999999999999999999998 9999999999986
No 2
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.67 E-value=8.8e-17 Score=88.96 Aligned_cols=54 Identities=43% Similarity=0.812 Sum_probs=48.5
Q ss_pred EEEEeeeCCCCCCCceecCCCCEEEEE-EeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 67 RFRCIVPYPPNSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 67 ~~~al~dy~~~~~~eL~~~~gd~i~v~-~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
+++|++||.+..+++|+|++||+|.|+ ++..++||.|+. .|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEEC
Confidence 479999999999999999999999999 788889999999 899999999999874
No 3
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.65 E-value=3.1e-16 Score=84.41 Aligned_cols=48 Identities=35% Similarity=0.693 Sum_probs=44.5
Q ss_pred EEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecC
Q psy9679 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116 (122)
Q Consensus 69 ~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~ 116 (122)
+|+|+|.++..+||+|++||+|.|+++.+++||.++..+++++||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 689999999999999999999999999999999999986789999995
No 4
>KOG1118|consensus
Probab=99.64 E-value=5.3e-16 Score=110.22 Aligned_cols=60 Identities=32% Similarity=0.704 Sum_probs=55.4
Q ss_pred CCCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 61 ~~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
.....+.|+|+|||++..++||.|++||+|.|+...+.+||.|+. .|..|+||.|||+.+
T Consensus 302 s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~--~g~sG~FPvnYv~vl 361 (366)
T KOG1118|consen 302 SQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEK--HGESGMFPVNYVEVL 361 (366)
T ss_pred CcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhee--cCccCccccceeEEe
Confidence 444567899999999999999999999999999999999999999 899999999999874
No 5
>KOG0162|consensus
Probab=99.63 E-value=1.6e-15 Score=117.83 Aligned_cols=60 Identities=30% Similarity=0.713 Sum_probs=54.9
Q ss_pred CCCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 61 ~~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
.+...+.|.|+|||.+++.+||+|++||+|.++.++..|||.|+. .|++||||.+||.++
T Consensus 1047 ~~~k~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~--~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1047 KPPKNPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKL--NGKEGLFPGNYVTEY 1106 (1106)
T ss_pred CCCCCcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhcc--CCccccccccccccC
Confidence 334457899999999999999999999999999999999999997 999999999999864
No 6
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.56 E-value=1.9e-14 Score=79.34 Aligned_cols=56 Identities=43% Similarity=0.877 Sum_probs=51.5
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..++|+|+|.+...++|+|++||+|.|++....+||.+++.+ ++.||||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~-~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCC-CCEEEEchHHEEEC
Confidence 468999999999999999999999999999889999999963 99999999999864
No 7
>KOG2199|consensus
Probab=99.55 E-value=8.3e-16 Score=112.40 Aligned_cols=57 Identities=33% Similarity=0.676 Sum_probs=52.9
Q ss_pred CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
....++||||||++...+||+|++||||.|++..+..||+|++ .+..|+||.|||..
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~--~~~~GlFPsnfVT~ 269 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGEN--HRGIGLFPSNFVTA 269 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhcccc--CCcccccchhhhhh
Confidence 3466899999999999999999999999999999999999999 78899999999864
No 8
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.52 E-value=5.2e-14 Score=76.62 Aligned_cols=52 Identities=42% Similarity=0.863 Sum_probs=47.9
Q ss_pred EEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 68 ~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
++|+|+|.+...++|+|.+||+|.|++..+++||.+++. .++.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLL-GGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEccccCc
Confidence 689999999999999999999999999988999999996 3399999999986
No 9
>KOG2070|consensus
Probab=99.52 E-value=4.9e-15 Score=111.01 Aligned_cols=56 Identities=34% Similarity=0.686 Sum_probs=52.4
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
...++|-|.|.+.+.|||+|.+||+|.|....+.|||.|+. .|+.||||+|||.+|
T Consensus 17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTl--ng~TGWFPsnYV~ei 72 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTL--NGRTGWFPSNYVREI 72 (661)
T ss_pred ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccc--cCccCccchHHHHHH
Confidence 34789999999999999999999999999999999999999 999999999999753
No 10
>KOG1029|consensus
Probab=99.49 E-value=1.8e-14 Score=112.47 Aligned_cols=55 Identities=29% Similarity=0.666 Sum_probs=52.0
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
...+.|+|||.++.+|||+|++||+|.|+++++..||.|+. +|+.|+||+|||..
T Consensus 1053 v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~--ng~sGLFPSNYV~k 1107 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGER--NGKSGLFPSNYVQK 1107 (1118)
T ss_pred cceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccc--cCccccCccccccc
Confidence 45789999999999999999999999999999999999999 89999999999954
No 11
>KOG4225|consensus
Probab=99.43 E-value=5.6e-13 Score=98.69 Aligned_cols=56 Identities=48% Similarity=0.945 Sum_probs=52.9
Q ss_pred EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
.++|||.|.++.++||.|.+||+|.|++++++||+.|+..++|+.|.||.|||+.+
T Consensus 434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~ 489 (489)
T KOG4225|consen 434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL 489 (489)
T ss_pred cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCccccccC
Confidence 48999999999999999999999999999999999998877999999999999853
No 12
>KOG4226|consensus
Probab=99.42 E-value=4.6e-13 Score=94.33 Aligned_cols=54 Identities=31% Similarity=0.630 Sum_probs=50.9
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..+.+.|.|.++.++||++.+|+.|.|.++..+|||+|.. .|+.||||+|||.+
T Consensus 108 t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~--ng~VGWFPSNYv~E 161 (379)
T KOG4226|consen 108 TPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSY--NGQVGWFPSNYVTE 161 (379)
T ss_pred CceEEEEeeccccccccccccCcEEEEEEeccCcceeccc--CCeeccccccceeh
Confidence 3478889999999999999999999999999999999999 99999999999975
No 13
>KOG4225|consensus
Probab=99.38 E-value=2e-12 Score=95.83 Aligned_cols=56 Identities=36% Similarity=0.807 Sum_probs=52.7
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
...++|+|+|+++...||.|.+||+|.|+.+.+..|+.|+. .|+.|+||++|||.+
T Consensus 230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEh--hGr~GifP~sYvE~~ 285 (489)
T KOG4225|consen 230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEH--HGRVGIFPASYVEIL 285 (489)
T ss_pred cchhhheeccccCCccccccCCCCEEEEEeeccCceeeeee--cceecceechheeec
Confidence 34589999999999999999999999999999999999999 999999999999975
No 14
>KOG4348|consensus
Probab=99.31 E-value=5.1e-13 Score=99.16 Aligned_cols=58 Identities=36% Similarity=0.803 Sum_probs=54.0
Q ss_pred CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
.....|.++|.|.++.++||.|+.||+|.|+.....|||.|.. .|+.|+||+|||.++
T Consensus 98 ~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~L--ngk~GmFPsNFVkel 155 (627)
T KOG4348|consen 98 PQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKL--NGKVGMFPSNFVKEL 155 (627)
T ss_pred ccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhcee--cCcccccchhhceec
Confidence 3467899999999999999999999999999999999999999 899999999999864
No 15
>KOG2996|consensus
Probab=99.29 E-value=1.9e-12 Score=98.99 Aligned_cols=57 Identities=33% Similarity=0.645 Sum_probs=51.2
Q ss_pred CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
.....++|-|||-+.+-.||+|++||+|.++.+. +.|||+|+. .|+.||||++||++
T Consensus 803 ~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev--ngrvGwFPstYVee 861 (865)
T KOG2996|consen 803 KVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV--NGRVGWFPSTYVEE 861 (865)
T ss_pred ceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceeccee--cCcccccccccccc
Confidence 3455788899999999999999999999999875 689999999 99999999999986
No 16
>KOG4348|consensus
Probab=99.27 E-value=2.6e-12 Score=95.43 Aligned_cols=56 Identities=39% Similarity=0.828 Sum_probs=50.7
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..+|+++|.|++++++||.|++||+|.++.++ +.|||.|+. .|++|+||-|||+.+
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL--nGk~GvFPDNFv~lv 318 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGEL--NGKKGVFPDNFVELV 318 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeee--cCccccCCchhhhhc
Confidence 45899999999999999999999999987764 789999999 999999999998753
No 17
>KOG2856|consensus
Probab=99.24 E-value=5.9e-12 Score=91.74 Aligned_cols=56 Identities=36% Similarity=0.736 Sum_probs=50.1
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEE-eCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~-~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..++|||||.++..+||+|+.||.|..+. .+..||+.|+.. .|+.|++|+|||+-+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~-~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLD-SGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCcccccccccccc-CCcccccchhhhhcc
Confidence 68999999999999999999999998665 457899999995 699999999999853
No 18
>KOG4226|consensus
Probab=99.20 E-value=1.1e-11 Score=87.39 Aligned_cols=58 Identities=22% Similarity=0.486 Sum_probs=52.4
Q ss_pred cccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
....+.|||.|.+..+.||+|++||.+.|+++. ++.||++++. .|+.|++|.||++.+
T Consensus 190 vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~-~G~vGLVPrNYv~vl 249 (379)
T KOG4226|consen 190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNA-RGQVGLVPRNYVVVL 249 (379)
T ss_pred EEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhccc-CCccceeecceEEEe
Confidence 455789999999999999999999999999864 7889999998 899999999999864
No 19
>KOG2546|consensus
Probab=99.18 E-value=6.5e-11 Score=87.64 Aligned_cols=55 Identities=44% Similarity=0.879 Sum_probs=51.9
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..++++|||.+..++||+|.+|-+|.|+++.++|||+|.. ++..|+||.|||+.+
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~--~~VTglFpgnyve~~ 478 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQ--DGVTGLFPGNYVEPL 478 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEecCCcchhhee--cCcceeccCcccccc
Confidence 3588999999999999999999999999999999999999 899999999999864
No 20
>KOG4792|consensus
Probab=99.18 E-value=4.7e-12 Score=87.13 Aligned_cols=56 Identities=23% Similarity=0.631 Sum_probs=52.6
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..+++++|||.+.++.+|.|++||++.|+++....||.+++. .|++|++|..||+.
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns-~Gk~GmIPvpYVe~ 179 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNS-EGKRGMIPVPYVEK 179 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhcc-CCcccceechHHHh
Confidence 457889999999999999999999999999999999999998 99999999999975
No 21
>KOG1702|consensus
Probab=99.15 E-value=4.3e-11 Score=81.21 Aligned_cols=58 Identities=36% Similarity=0.663 Sum_probs=54.5
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
...++|+|||.+++++|.+|.-||.|.-+...++||..|+..++|..|..|+||+|.|
T Consensus 207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 4789999999999999999999999998889999999999999999999999999865
No 22
>KOG1029|consensus
Probab=99.12 E-value=2.1e-11 Score=95.68 Aligned_cols=56 Identities=34% Similarity=0.803 Sum_probs=50.9
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..+|+|||.|++...+|++|..||+|.|-... ..||..|+. .|+.||||.+||+.|
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel--~gktGWFPenyvEki 750 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGEL--RGKTGWFPENYVEKI 750 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCccccccee--ccccCcCcHHHHhhc
Confidence 56899999999999999999999999987654 789999999 899999999999864
No 23
>KOG1264|consensus
Probab=99.08 E-value=3.3e-11 Score=95.25 Aligned_cols=57 Identities=23% Similarity=0.508 Sum_probs=52.0
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
...|+|||||.+..++||+|-++-+|..+.+...|||+|... ....+|||+|||++|
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYG-g~iq~wfPsnyVeei 830 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYG-GRIQQWFPSNYVEEI 830 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccc-cceeeeccHHHhhhh
Confidence 357999999999999999999999999999999999999995 457899999999875
No 24
>KOG3655|consensus
Probab=99.06 E-value=3.7e-11 Score=89.90 Aligned_cols=58 Identities=29% Similarity=0.590 Sum_probs=53.7
Q ss_pred cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..+.++|+|||++.++.|++|..+|+|.+++..+.|||.|... +|+.|+||+|||+.|
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~p-dG~~glfPaNyV~li 483 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGP-DGEVGLFPANYVELI 483 (484)
T ss_pred cCCCccccccccccCCcccccCCccccccccccCCccccccCC-CCCcCcccccccccC
Confidence 4567899999999999999999999999999999999999996 899999999999864
No 25
>KOG3523|consensus
Probab=99.00 E-value=1.4e-11 Score=94.48 Aligned_cols=59 Identities=34% Similarity=0.686 Sum_probs=55.0
Q ss_pred cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..+.+.+...|.+..++||++..+|++.|+.+..+||+.|+.+++|.+||||..|+++|
T Consensus 607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI 665 (695)
T KOG3523|consen 607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEI 665 (695)
T ss_pred CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999998864
No 26
>KOG0515|consensus
Probab=99.00 E-value=1.3e-10 Score=88.33 Aligned_cols=54 Identities=22% Similarity=0.446 Sum_probs=48.3
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeC---CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~---~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..+.|+|||+++..|||+|++||.+.|+.++ +..||.+++ .|++|+||.||+..
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~l--ng~eGyVPRnylgL 740 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARL--NGEEGYVPRNYLGL 740 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhh--cCcccccchhhhhc
Confidence 4688999999999999999999999999874 456999997 99999999999753
No 27
>KOG3875|consensus
Probab=98.94 E-value=1e-10 Score=83.66 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=49.1
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeC-----CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-----~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
..++|+|||.+.++.||+|++||.+.|..++ +..||.....+.+..||||.|||+.|
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi 330 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII 330 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence 5789999999999999999999999987754 34588888766778899999999864
No 28
>KOG3601|consensus
Probab=98.79 E-value=3.8e-09 Score=72.06 Aligned_cols=57 Identities=26% Similarity=0.514 Sum_probs=52.4
Q ss_pred CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
....+..++|||.++.+.+|.|++||.+.|++..+.-||.|+. .|+.|+||++|+..
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~--lg~agiFpagyv~p 217 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSK--LGRAGIFPAGYVAP 217 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccc--cCceeeecCccccc
Confidence 4456889999999999999999999999999999999999999 79999999999853
No 29
>KOG1843|consensus
Probab=98.69 E-value=7.5e-09 Score=76.59 Aligned_cols=54 Identities=26% Similarity=0.573 Sum_probs=49.3
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..+.++|+|..+..++|.|++||+|.++++. ...||.|+. ++++|+||+|||+.
T Consensus 417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~--~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRG--NGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhc--cccccccccceecc
Confidence 3799999999999999999999999999876 467999999 89999999999974
No 30
>KOG3775|consensus
Probab=98.62 E-value=1.6e-08 Score=74.27 Aligned_cols=58 Identities=34% Similarity=0.695 Sum_probs=53.6
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
.+..++++.|.+..++||.+.+||-|.|....++-|..|.++|+|++|+||+.|+.+|
T Consensus 262 e~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~ev 319 (482)
T KOG3775|consen 262 EQTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEV 319 (482)
T ss_pred chhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEec
Confidence 3568999999999999999999999999988899999999999999999999998764
No 31
>KOG4278|consensus
Probab=98.56 E-value=1e-07 Score=74.91 Aligned_cols=55 Identities=15% Similarity=0.427 Sum_probs=47.2
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
...++|||||.+.++.+|++.+||.+.|+.-.. ..|..++.. +|+ ||||+||+..
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartK-NGq-GWVPSNyItP 145 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTK-NGQ-GWVPSNYITP 145 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeeccc-CCC-cccccccccc
Confidence 457999999999999999999999999998764 458888874 666 9999999865
No 32
>KOG2528|consensus
Probab=98.42 E-value=6.6e-08 Score=72.34 Aligned_cols=55 Identities=29% Similarity=0.642 Sum_probs=50.2
Q ss_pred EEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
.+|++|||......|+++..+|++.++..+ ..|||.|.+. .|.+|+||+.||+.+
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Ns-rge~GlfPa~yVeV~ 59 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNS-RGERGLFPASYVEVT 59 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCc-cCccCCCcccceeee
Confidence 679999999999999999999999988765 7899999998 899999999999864
No 33
>KOG3632|consensus
Probab=98.35 E-value=4.6e-07 Score=73.44 Aligned_cols=57 Identities=39% Similarity=0.642 Sum_probs=48.9
Q ss_pred cccEEEEeeeCCCCC--------CCceecCCCCEEEEEE-eCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 64 VRERFRCIVPYPPNS--------EYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 64 ~~~~~~al~dy~~~~--------~~eL~~~~gd~i~v~~-~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
....++|+|||++.. +.||.|++|+||.|+. ++.+|++.|+. .|+.|+||.|+|.++
T Consensus 1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~--ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL--NGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred cceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc--ccccccccccccccc
Confidence 356899999998742 3689999999999886 56789999999 899999999999764
No 34
>KOG4773|consensus
Probab=98.33 E-value=4.4e-08 Score=71.25 Aligned_cols=57 Identities=32% Similarity=0.631 Sum_probs=52.1
Q ss_pred CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
...+.+.+++||.+....||.|..||++.++.+++.+||.|+. .+.+||||.+|++.
T Consensus 173 ~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~--R~~~g~yp~sF~~~ 229 (386)
T KOG4773|consen 173 MAAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKV--RGLTGYYPDSFVKQ 229 (386)
T ss_pred hhhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeee--ccccccccHHhhhh
Confidence 3456789999999999999999999999999999999999999 89999999998864
No 35
>KOG4792|consensus
Probab=98.29 E-value=5.8e-06 Score=57.41 Aligned_cols=55 Identities=36% Similarity=0.562 Sum_probs=47.0
Q ss_pred ccEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 65 RERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 65 ~~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..+++++++-.+. +...|.+++||+|.|.++..+|-|+|++ +|+.|.||..||+.
T Consensus 227 Pa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEl--nGk~G~fPfThvrf 283 (293)
T KOG4792|consen 227 PAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGEL--NGKIGHFPFTHVRF 283 (293)
T ss_pred ChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeee--cCccccccceeEEe
Confidence 3467777776654 4456999999999999999999999999 99999999999975
No 36
>KOG2222|consensus
Probab=98.20 E-value=1e-07 Score=72.50 Aligned_cols=56 Identities=30% Similarity=0.554 Sum_probs=50.5
Q ss_pred cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
...+++|+.||...+++||-|+++|+|.++.+-+..-|.|+. +|-+||||+-||+.
T Consensus 547 ~~krakal~df~r~dddelgfrkndiitiisekdehcwvgel--nglrgwfpakfvel 602 (848)
T KOG2222|consen 547 GAKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGEL--NGLRGWFPAKFVEL 602 (848)
T ss_pred hhHHHHHHhhhhhccccccccccccEEEEeecCCcceeeecc--ccccccchHHHHHH
Confidence 456789999999999999999999999999888888899999 89999999988763
No 37
>KOG3557|consensus
Probab=98.17 E-value=3.5e-07 Score=71.22 Aligned_cols=56 Identities=18% Similarity=0.417 Sum_probs=48.9
Q ss_pred cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
....+.++|||.++...||++.+||++.|++.. ..||++++. .|+.|++|.|.+..
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~-~G~~GyvP~nIL~~ 554 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNG-HGRAGYVPSNILAP 554 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCc-cCCCCCcchhhhcc
Confidence 345899999999999999999999999988764 459999997 89999999987654
No 38
>KOG0197|consensus
Probab=98.12 E-value=7.7e-07 Score=67.75 Aligned_cols=57 Identities=18% Similarity=0.506 Sum_probs=51.0
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCE-EEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDL-IYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~-i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
...+.|+|||.+....+|+|..||+ ..+++..+..||.++....++.|++|.|||..
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~ 68 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVAR 68 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeec
Confidence 4579999999999999999999999 67788888899999887688999999999974
No 39
>KOG3771|consensus
Probab=98.10 E-value=8.3e-06 Score=61.66 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=43.7
Q ss_pred CCCCCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCe
Q psy9679 59 QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFV 119 (122)
Q Consensus 59 ~~~~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv 119 (122)
...+.....+.++|||.+++.++|+|..||+|.|+... .+.||.|.. .|..+-++.+|+
T Consensus 394 ~~~p~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~--mg~ke~~~~~~~ 453 (460)
T KOG3771|consen 394 DLPPGFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWL--MGVKESDWNGLF 453 (460)
T ss_pred cCCCCCccceeccccccccccccccccCCCEEEEecCCCccchhhHHH--hhhcccccccce
Confidence 44555667899999999999999999999999998854 455777766 454443444443
No 40
>KOG4429|consensus
Probab=98.07 E-value=1.1e-06 Score=63.01 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=49.9
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..|.++|+|.+...+||...+||++.+.++...|||.|+. .|..|.||+.|+++
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl--~gd~~hf~Aa~iEe 417 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRL--LGDFEHFHAAEIEE 417 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeee--ccccCCCcHHHHHH
Confidence 4689999999999999999999999888889999999999 78999999999875
No 41
>KOG1451|consensus
Probab=98.00 E-value=8.4e-06 Score=63.36 Aligned_cols=56 Identities=32% Similarity=0.696 Sum_probs=50.0
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEE-EEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~-v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
...+.++|...+....+++|..|.++. |.+...+||..|+. .|+.|++|.|||+.+
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL--nGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTL--NGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeeec--CCCcccCcccccCcC
Confidence 456788999999999999999999987 66678899999999 999999999999865
No 42
>KOG0609|consensus
Probab=98.00 E-value=1.5e-06 Score=66.65 Aligned_cols=55 Identities=22% Similarity=0.488 Sum_probs=45.5
Q ss_pred ccEEEEeeeCCCCCC-------CceecCCCCEEEEEEeCCCCeEEEEEcC---CCcEEEecCCCe
Q psy9679 65 RERFRCIVPYPPNSE-------YELELRVGDLIYVHKKRDDGWYKGTLQR---TGRTGLFPASFV 119 (122)
Q Consensus 65 ~~~~~al~dy~~~~~-------~eL~~~~gd~i~v~~~~~~gW~~g~~~~---~g~~G~~P~~yv 119 (122)
..+++|+|||++..+ ..|.|++||++.|+.++|..||.++... .+..|++|+...
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~ 278 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKEL 278 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHH
Confidence 468999999998765 3589999999999999999999998853 256789998654
No 43
>KOG3725|consensus
Probab=97.84 E-value=3.2e-06 Score=59.80 Aligned_cols=56 Identities=23% Similarity=0.438 Sum_probs=49.4
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
...++++|||++....||++-..|+|.|..-. +..|..|+. .+++|-+|..|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgEr--GnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGER--GNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhh--cCCCCCcchhHHHhc
Confidence 46799999999999999999999999987754 778999999 789999999998753
No 44
>KOG4575|consensus
Probab=97.84 E-value=3.9e-05 Score=60.15 Aligned_cols=56 Identities=29% Similarity=0.527 Sum_probs=44.7
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
...++|+|.+.++.+++|-|.+||+|.++.-.+.-||.+........|+||+|||.
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvh 63 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVH 63 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCccccee
Confidence 45799999999999999999999999888766554554544335567999999984
No 45
>KOG3632|consensus
Probab=97.47 E-value=0.00078 Score=55.44 Aligned_cols=61 Identities=41% Similarity=0.734 Sum_probs=50.1
Q ss_pred CCCcccEEEEeeeCCC------CCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 61 VPTVRERFRCIVPYPP------NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 61 ~~~~~~~~~al~dy~~------~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
.......+.|.|.|.+ ..+.||.+..|+.|+|... +.+|++.|+.. +|++|++|+|||+.+
T Consensus 443 ~~gk~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~-dgrrglvPsnFVe~v 510 (1335)
T KOG3632|consen 443 VEGKAQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELR-DGRRGLVPSNFVEVV 510 (1335)
T ss_pred ccCccceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeee-cccccCCCchheEEe
Confidence 3345668899999877 1246899999999999874 57899999997 999999999999863
No 46
>KOG3601|consensus
Probab=97.43 E-value=1.4e-05 Score=54.83 Aligned_cols=51 Identities=24% Similarity=0.405 Sum_probs=44.5
Q ss_pred EEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeE
Q psy9679 68 FRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 68 ~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
+.++++|.+...+||+|.+|+.|.+++.. +-.|.+.+. .|..|++|.||.+
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael--~g~~g~~P~Nai~ 54 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAEL--DGPEGFIPKNAIR 54 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhh--cCccccCcccccc
Confidence 46789999999999999999999988865 456888988 8999999999873
No 47
>KOG3565|consensus
Probab=97.22 E-value=0.00047 Score=54.91 Aligned_cols=59 Identities=22% Similarity=0.537 Sum_probs=51.3
Q ss_pred CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
.....+.|+|.|+++.++++++..|+++.+++.+ ++||-+++....+..|+||.+|++.
T Consensus 576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~ 635 (640)
T KOG3565|consen 576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDV 635 (640)
T ss_pred CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccc
Confidence 3456899999999999999999999999988876 7899999844488999999999874
No 48
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=97.19 E-value=0.00051 Score=40.88 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679 78 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119 (122)
Q Consensus 78 ~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv 119 (122)
+..+|.+++|+++.|++..+..-|.+++. .|+-|+++.+++
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~-~GKYGYV~~~~L 69 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNS-EGKYGYVLRSHL 69 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEET-TTEEEEEEGGGS
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCC-CCceeEEEHHHc
Confidence 35689999999999999999999999998 999999998876
No 49
>KOG0199|consensus
Probab=97.17 E-value=0.00058 Score=54.92 Aligned_cols=52 Identities=27% Similarity=0.273 Sum_probs=42.2
Q ss_pred EEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeE
Q psy9679 69 RCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 69 ~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
+|.-+|+...++.|-|++||.|.|++... ..||+|.+.++++.|.||.+-|.
T Consensus 378 ~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 378 VARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 34444555668899999999999998764 56999999999999999987664
No 50
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=96.94 E-value=0.0023 Score=34.55 Aligned_cols=38 Identities=32% Similarity=0.590 Sum_probs=30.3
Q ss_pred eecCCCCEEEEEEeCCCC-eEEEEEcCCCcEEEecCCCeE
Q psy9679 82 LELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~~g-W~~g~~~~~g~~G~~P~~yv~ 120 (122)
-.+..|+.|.++.....+ |++.+.. +++.||+...|++
T Consensus 17 ~~l~~g~~v~v~~~~~~~~W~~V~~~-~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDGNWYKVRTY-DGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT--EEEEEEE-TTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCcEEEEEECc-CCcEEEEEccccC
Confidence 356789999999887655 9999554 8889999999874
No 51
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=96.41 E-value=0.011 Score=32.68 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=29.9
Q ss_pred eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679 82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv 119 (122)
-.+..|+.+.++...+++|.+.+.. .|+.||++..++
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~-~g~~Gwi~~~~~ 61 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYG-SGQRGYVPGYVV 61 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcC-CCCEEEEEeeee
Confidence 4577899999998766589999874 699999977655
No 52
>KOG3812|consensus
Probab=96.03 E-value=0.0026 Score=47.04 Aligned_cols=50 Identities=22% Similarity=0.560 Sum_probs=39.2
Q ss_pred EEEEeeeCCCCCCC-------ceecCCCCEEEEEEeCCCCeEEEEEcCCC-cEEEecC
Q psy9679 67 RFRCIVPYPPNSEY-------ELELRVGDLIYVHKKRDDGWYKGTLQRTG-RTGLFPA 116 (122)
Q Consensus 67 ~~~al~dy~~~~~~-------eL~~~~gd~i~v~~~~~~gW~~g~~~~~g-~~G~~P~ 116 (122)
-+++.-+|.+.-.+ .++|...|+|.|.++-+++||.|+..+.| ..||+|+
T Consensus 60 AV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 60 AVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 35566678776543 48999999999999999999999876454 5699986
No 53
>KOG3705|consensus
Probab=95.89 E-value=0.0091 Score=45.16 Aligned_cols=55 Identities=35% Similarity=0.492 Sum_probs=46.8
Q ss_pred EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..+++++..++...|+.++.||+|.|-...=+|.-+|++.+.++.|+||+--|++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 4688999999999999999999999888776777788887789999999865543
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.44 E-value=0.024 Score=39.27 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=32.0
Q ss_pred eecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeE
Q psy9679 82 LELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
-.+..|+.|.|++..+ .+|.+.+.. .|+.||++..|+.
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~-~G~~GWV~~~~Ls 86 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDS-KGRTAWIPLKQLS 86 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeC-CCCEEeEEHHHhc
Confidence 4678999999998765 679999876 8999999998865
No 55
>KOG0040|consensus
Probab=95.04 E-value=0.00029 Score=60.05 Aligned_cols=55 Identities=24% Similarity=0.547 Sum_probs=48.6
Q ss_pred ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
...+.|+|||....+.+.+.++||++.++......||..++ ....|++|+.||+.
T Consensus 968 ~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~--~d~qg~vpa~yvk~ 1022 (2399)
T KOG0040|consen 968 KECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEV--NDRQGFVPAAYVKR 1022 (2399)
T ss_pred HHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchh--hhhcCcchHHHHHH
Confidence 34567899999999999999999999988888888999999 67789999999864
No 56
>KOG2996|consensus
Probab=94.66 E-value=0.015 Score=45.92 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=34.4
Q ss_pred CceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 80 YELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 80 ~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
.-|.+..||++.++..+ ...||.|++...+..||||++-|.+
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp 667 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKP 667 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCc
Confidence 34889999999877654 6779999998788899999987653
No 57
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=94.65 E-value=0.11 Score=27.99 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=27.4
Q ss_pred eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679 82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv 119 (122)
..+..|..+.|. .+..+|.+.+. +|..||+....+
T Consensus 19 ~~l~~g~~v~v~-~~~~~W~~V~~--~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVI-ECRGGWCKVRA--DGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEE-EccCCeEEEEE--CCeEEeEEeeec
Confidence 566778888777 44667999994 899999987654
No 58
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=92.49 E-value=0.27 Score=38.27 Aligned_cols=38 Identities=24% Similarity=0.539 Sum_probs=31.7
Q ss_pred eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679 82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
-.+..|+.|.|+.....||++.+.. +|+.||+-..|+.
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~-~GktGwV~~~YLs 140 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYN-DGKTGFVNGKYLT 140 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcC-CCCEEEEeccccc
Confidence 4688999999987567789999985 6999999888875
No 59
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=91.90 E-value=0.4 Score=33.27 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=32.0
Q ss_pred eecCCCCEEEEEEeCCC-CeEEEEEcCCCcEEEecCCCeE
Q psy9679 82 LELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~~-gW~~g~~~~~g~~G~~P~~yv~ 120 (122)
=+++.||.+.|+..... ||.+.+.. .|+.|||+..++.
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~-~g~t~wi~~~~lt 86 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDS-SGRTGWILSKNLT 86 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEec-CCceEEEechhhc
Confidence 47899999999988755 89999997 8999999986654
No 60
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=91.77 E-value=0.33 Score=26.58 Aligned_cols=24 Identities=25% Similarity=0.720 Sum_probs=20.5
Q ss_pred ecCCCCEEEEEEeCCCCeEEEEEc
Q psy9679 83 ELRVGDLIYVHKKRDDGWYKGTLQ 106 (122)
Q Consensus 83 ~~~~gd~i~v~~~~~~gW~~g~~~ 106 (122)
.|++|+.|.+....+++||.|+..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 478999999998888899999763
No 61
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=90.03 E-value=0.51 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.801 Sum_probs=18.5
Q ss_pred eecCCCCEEEEEEeC------CCCeEEEEE
Q psy9679 82 LELRVGDLIYVHKKR------DDGWYKGTL 105 (122)
Q Consensus 82 L~~~~gd~i~v~~~~------~~gW~~g~~ 105 (122)
|.++.||.+.|.... +..||.|..
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 778999999776543 567999865
No 62
>KOG4384|consensus
Probab=86.72 E-value=2.2 Score=31.94 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=46.0
Q ss_pred CcccEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679 63 TVRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121 (122)
Q Consensus 63 ~~~~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~ 121 (122)
..+..+++.-+|.++ +.++|.++.||+|.++.+..-|-|.|-+ .++.|-|+.-|+..
T Consensus 134 p~c~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~--~~kv~~f~~~~v~~ 192 (361)
T KOG4384|consen 134 PFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLL--NNKVGSFKFIYVDV 192 (361)
T ss_pred CccccccccccCCCCcccccchhhcccchhhccccCccccccccc--cCcccccccceecc
Confidence 344566777777654 6688999999999999999888899988 78899998888764
No 63
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=81.65 E-value=5.4 Score=21.64 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=22.2
Q ss_pred ceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecC
Q psy9679 81 ELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPA 116 (122)
Q Consensus 81 eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~ 116 (122)
+-.+..|+-|.|++.. +..|..++. ....||+++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t--~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQT--PFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE---SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEec--CCeeEeeeC
Confidence 4567888989888866 556888888 778899864
No 64
>KOG3580|consensus
Probab=71.34 E-value=8.1 Score=31.43 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=36.6
Q ss_pred cEEEEeeeCCCCCCCceecCCCCEEEEEEeC---CCC-eEEEEEcC---CCcEEEecC
Q psy9679 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDG-WYKGTLQR---TGRTGLFPA 116 (122)
Q Consensus 66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~---~~g-W~~g~~~~---~g~~G~~P~ 116 (122)
.+.+.-|.|+...+..|.|.+||++.|++-. ..| |+-.+..+ ...+|++|.
T Consensus 505 FyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPN 562 (1027)
T KOG3580|consen 505 FYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPN 562 (1027)
T ss_pred eEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCC
Confidence 3567778899999999999999999988743 333 55444322 345788885
No 65
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=58.62 E-value=15 Score=29.48 Aligned_cols=36 Identities=31% Similarity=0.661 Sum_probs=27.4
Q ss_pred CCCEEEEEEeC-----CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679 86 VGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFVESF 122 (122)
Q Consensus 86 ~gd~i~v~~~~-----~~gW~~g~~~~~g~~G~~P~~yv~~~ 122 (122)
=|+++.|.++. +-.|.+.... .|..||+-..|++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 414 (549)
T PRK13545 374 FGDIFTISDSNKNEKKDVEWIQITLS-NGEIGWISTKFIEPF 414 (549)
T ss_pred cCceEEEcccccccccCcceEEEEec-CCccceeeeeeeeec
Confidence 36777776643 4568888887 999999998888763
No 66
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=55.98 E-value=18 Score=20.22 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=13.4
Q ss_pred cCCCCEEEEEEeC---CCCeEEEEEc
Q psy9679 84 LRVGDLIYVHKKR---DDGWYKGTLQ 106 (122)
Q Consensus 84 ~~~gd~i~v~~~~---~~gW~~g~~~ 106 (122)
|++|+.|.|.... ...|+.++..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~ 26 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVL 26 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEE
Confidence 6889999998765 3348888763
No 67
>KOG1314|consensus
Probab=50.68 E-value=18 Score=27.48 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCceecCCCCEEEEEEeCCCCeEEEEE-------cC-CC-cEEEecCCC
Q psy9679 79 EYELELRVGDLIYVHKKRDDGWYKGTL-------QR-TG-RTGLFPASF 118 (122)
Q Consensus 79 ~~eL~~~~gd~i~v~~~~~~gW~~g~~-------~~-~g-~~G~~P~~y 118 (122)
+.-|++++||.|.+.. ...+|..|+. +. .. -+||||.+.
T Consensus 331 dprisL~p~d~i~~tr-~~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~ 378 (414)
T KOG1314|consen 331 DPRISLPPGDGIKATR-GFNHWLYGEEILSEMFNESRERKIRGWFPRNC 378 (414)
T ss_pred CcccccCCCcceeeee-eeecccchhhhhhHHHhhcchhhhcccccccc
Confidence 3458999999996554 3567888832 21 11 579999876
No 68
>KOG3416|consensus
Probab=49.22 E-value=8.9 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=19.5
Q ss_pred eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEe
Q psy9679 82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 114 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~ 114 (122)
-.|+.||+|.+...-..-|--+..+..|+.|++
T Consensus 60 ~~~~PGDIirLt~Gy~Si~qg~LtL~~GK~Ge~ 92 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGGYASIFQGCLTLYVGKGGEV 92 (134)
T ss_pred cccCCccEEEecccchhhhcCceEEEecCCceE
Confidence 468999999887755443333333334555543
No 69
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=49.04 E-value=0.69 Score=31.34 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=26.1
Q ss_pred CCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecC
Q psy9679 78 SEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPA 116 (122)
Q Consensus 78 ~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~ 116 (122)
+.++..-..|.++.++.+. ..||..|-.+ +|+.|+|++
T Consensus 51 ~~~~~~~~~G~V~e~LSEh~c~G~leGY~L-tGrhglf~s 89 (179)
T PF03894_consen 51 DDDEHLAPGGRVMEVLSEHQCQGWLEGYLL-TGRHGLFAS 89 (179)
T ss_dssp TT-TTEESS-SEEE-S-HHHHHHHHHHHHH-TT-EEEEEE
T ss_pred cchhhcccCCeeeeecCHHHHHHHHHHHHh-cCCcccccc
Confidence 3456667778999888765 6789999877 999999974
No 70
>PRK03187 tgl transglutaminase; Provisional
Probab=44.23 E-value=32 Score=25.01 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=23.5
Q ss_pred EeeeCCCCCCCce------ecCCCCEEEEEEeC---CCCeEEEEE
Q psy9679 70 CIVPYPPNSEYEL------ELRVGDLIYVHKKR---DDGWYKGTL 105 (122)
Q Consensus 70 al~dy~~~~~~eL------~~~~gd~i~v~~~~---~~gW~~g~~ 105 (122)
-|||+.-..+-+| .+..||++..-..+ +..||+|++
T Consensus 146 ~Ly~W~~d~dL~i~t~~g~~~~PGD~vYFkNPd~~p~tp~WqGeN 190 (272)
T PRK03187 146 YLYDWHYDRDLKLITKTGGDFLPGDCVYFKNPDFNPATPEWQGEN 190 (272)
T ss_pred EEEecCCCCCcceEEecCCCCCCCcEEEecCCCCCCCCCccccee
Confidence 4566655333333 66789999876644 346999987
No 71
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=40.67 E-value=68 Score=18.05 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=19.2
Q ss_pred cCCCCEEE--EEEeCCCCeEEEEEcCCCcEEEec
Q psy9679 84 LRVGDLIY--VHKKRDDGWYKGTLQRTGRTGLFP 115 (122)
Q Consensus 84 ~~~gd~i~--v~~~~~~gW~~g~~~~~g~~G~~P 115 (122)
++.|+++. |..-.+.|.|.- .. .+..|++|
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~-l~-~~v~G~v~ 32 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFR-LS-SSIVGRVL 32 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEE-eC-CCCEEEEE
Confidence 46777775 455556776643 32 67888887
No 72
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=40.04 E-value=47 Score=18.24 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=21.3
Q ss_pred cCCCCEEE--EEEeCCCCeEEEEEcCCCcEEEecCCC
Q psy9679 84 LRVGDLIY--VHKKRDDGWYKGTLQRTGRTGLFPASF 118 (122)
Q Consensus 84 ~~~gd~i~--v~~~~~~gW~~g~~~~~g~~G~~P~~y 118 (122)
++.|+++. |.+....|.+. ... .+..|++|.+.
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V-~l~-~~~~g~ip~~~ 36 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFV-DLG-NGIEGFIPISE 36 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEE-EES-TSSEEEEEGGG
T ss_pred CCCCCEEEEEEEEEECCEEEE-EEC-CcEEEEEEeeh
Confidence 46788886 45555555444 443 68899998643
No 73
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=39.95 E-value=53 Score=18.75 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred cCCCCEEE--EEEeCCCCeEEEEEcCCCcEEEecCC
Q psy9679 84 LRVGDLIY--VHKKRDDGWYKGTLQRTGRTGLFPAS 117 (122)
Q Consensus 84 ~~~gd~i~--v~~~~~~gW~~g~~~~~g~~G~~P~~ 117 (122)
++.||++. |.+..+.| |..... .+..|++|.+
T Consensus 4 p~~GdiV~g~V~~i~~~g-~~v~i~-~~~~G~l~~s 37 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKR-WKVDIN-SPYDAVLPLS 37 (86)
T ss_pred CCCCCEEEEEEEEECCCE-EEEECC-CCeEEEEEHH
Confidence 36788885 55655555 444443 5788888854
No 74
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.66 E-value=50 Score=22.01 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.9
Q ss_pred EEEeCCCCeEEEEEcCCCcEEEec
Q psy9679 92 VHKKRDDGWYKGTLQRTGRTGLFP 115 (122)
Q Consensus 92 v~~~~~~gW~~g~~~~~g~~G~~P 115 (122)
-+++++.+|.+.+. .|..||+-
T Consensus 136 sl~~C~g~wC~~~~--~g~~GWi~ 157 (171)
T COG3807 136 SLKKCKGQWCRLTA--KGYSGWIS 157 (171)
T ss_pred EecccccceEEEEc--cCccceee
Confidence 45678888999998 88899874
No 75
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=31.04 E-value=84 Score=16.24 Aligned_cols=21 Identities=29% Similarity=0.756 Sum_probs=12.9
Q ss_pred cCCCCEEEEEEeCCCCeEEEEE
Q psy9679 84 LRVGDLIYVHKKRDDGWYKGTL 105 (122)
Q Consensus 84 ~~~gd~i~v~~~~~~gW~~g~~ 105 (122)
++.|+.+.+.- .+.-|++++.
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I 23 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARI 23 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEE
Confidence 45666665555 5556777765
No 76
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=30.09 E-value=47 Score=21.03 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=11.4
Q ss_pred CceecCCCCEEEEEEe
Q psy9679 80 YELELRVGDLIYVHKK 95 (122)
Q Consensus 80 ~eL~~~~gd~i~v~~~ 95 (122)
.-|.+++||+|.|+.+
T Consensus 16 TGl~lk~GD~IsIvA~ 31 (121)
T PF07828_consen 16 TGLILKAGDIISIVAS 31 (121)
T ss_dssp EEEEE-TT-EEEEEEE
T ss_pred eeEEEcCCCEEEEEEe
Confidence 4589999999998763
No 77
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.45 E-value=1e+02 Score=18.74 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=19.5
Q ss_pred CCCCceecCCCCEEEEEEeCCCCeE
Q psy9679 77 NSEYELELRVGDLIYVHKKRDDGWY 101 (122)
Q Consensus 77 ~~~~eL~~~~gd~i~v~~~~~~gW~ 101 (122)
.+..|-.|+.|+++.|..-.+++..
T Consensus 26 RD~SEShf~~g~vlrV~r~Ed~~~f 50 (106)
T COG3097 26 RDKSESHFKPGDVLRVGRFEDDRYF 50 (106)
T ss_pred eccchhcCCCCCEEEEEEecCCcEE
Confidence 4567889999999999887766543
No 78
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=24.68 E-value=36 Score=14.37 Aligned_cols=7 Identities=71% Similarity=1.697 Sum_probs=5.0
Q ss_pred CCCCCCC
Q psy9679 10 IHYVPRP 16 (122)
Q Consensus 10 ~~~~~~p 16 (122)
-||+|||
T Consensus 13 chyiprp 19 (22)
T PF08121_consen 13 CHYIPRP 19 (22)
T ss_pred ccccCCC
Confidence 4777777
No 79
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=24.54 E-value=1.4e+02 Score=16.76 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=20.6
Q ss_pred CCCCEEE--EEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679 85 RVGDLIY--VHKKRDDGWYKGTLQRTGRTGLFPASFV 119 (122)
Q Consensus 85 ~~gd~i~--v~~~~~~gW~~g~~~~~g~~G~~P~~yv 119 (122)
+.||++. |.+..++ +|..... .+..|++|.+.+
T Consensus 5 ~~GdiV~G~V~~v~~~-~~~V~i~-~~~~g~l~~~~~ 39 (82)
T cd04454 5 DVGDIVIGIVTEVNSR-FWKVDIL-SRGTARLEDSSA 39 (82)
T ss_pred CCCCEEEEEEEEEcCC-EEEEEeC-CCceEEeechhc
Confidence 6788885 5555555 4555553 567788876543
No 80
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=24.20 E-value=1.5e+02 Score=16.98 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=18.9
Q ss_pred EEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679 92 VHKKRDDGWYKGTLQRTGRTGLFPASFV 119 (122)
Q Consensus 92 v~~~~~~gW~~g~~~~~g~~G~~P~~yv 119 (122)
|+++..++ ...+....+-+|++|..++
T Consensus 8 V~EKt~D~-l~v~l~~~~l~a~l~~~HL 34 (72)
T cd05699 8 VLKKTLNG-LEVAILPEEIRAFLPTMHL 34 (72)
T ss_pred EEEEcCCc-EEEEecCCCcEEEEEcccc
Confidence 67777666 5566655678888887665
No 81
>PF08460 SH3_5: Bacterial SH3 domain; InterPro: IPR013667 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; GO: 0016787 hydrolase activity; PDB: 1R77_B.
Probab=23.20 E-value=1.5e+02 Score=16.46 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=16.4
Q ss_pred ceecCCCCEEEE---EEeCCCCeEEEEEcCCCcEEEec
Q psy9679 81 ELELRVGDLIYV---HKKRDDGWYKGTLQRTGRTGLFP 115 (122)
Q Consensus 81 eL~~~~gd~i~v---~~~~~~gW~~g~~~~~g~~G~~P 115 (122)
.-.+.+|+.|.- +..+ .-.|..-....|+++++|
T Consensus 28 ~~~~~~G~~V~YD~~~~~d-Gy~Wisy~~~sG~r~Yva 64 (65)
T PF08460_consen 28 VGTYPKGQSVNYDQVIKAD-GYVWISYISYSGQRRYVA 64 (65)
T ss_dssp EEEE-TT-EEEEEEEEEET-TEEEEEEE-TT--EEEEE
T ss_pred EEEECCCCEEEEEEEEEeC-CEEEEEEECCCCeEEEEE
Confidence 356788888863 3333 334544443378888875
No 82
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=22.23 E-value=1e+02 Score=18.10 Aligned_cols=19 Identities=21% Similarity=0.606 Sum_probs=13.5
Q ss_pred ceecCCCCEEEEEEeCCCC
Q psy9679 81 ELELRVGDLIYVHKKRDDG 99 (122)
Q Consensus 81 eL~~~~gd~i~v~~~~~~g 99 (122)
.+.++.||.|.|+...+.|
T Consensus 6 ~~~I~~GD~V~Vi~G~dKG 24 (83)
T CHL00141 6 KMHVKIGDTVKIISGSDKG 24 (83)
T ss_pred eCcccCCCEEEEeEcCCCC
Confidence 3578889999888754443
No 83
>PF15505 DUF4648: Domain of unknown function (DUF4648)
Probab=21.23 E-value=57 Score=21.68 Aligned_cols=38 Identities=21% Similarity=0.059 Sum_probs=28.4
Q ss_pred EEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEc
Q psy9679 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 106 (122)
Q Consensus 69 ~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~ 106 (122)
++.-||.+..+.||--..+|...|+-.+...-+.|+..
T Consensus 2 VieSDly~~rPLELLPHR~Dr~dv~~~e~~~~rfGrlq 39 (170)
T PF15505_consen 2 VIESDLYPHRPLELLPHRSDRRDVLCREGEERRFGRLQ 39 (170)
T ss_pred eeeccccCCCchhccccccchhcccccccccccccccc
Confidence 45568888889999999999998877665544556654
No 84
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=21.20 E-value=1.1e+02 Score=17.61 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=12.9
Q ss_pred eecCCCCEEEEEEeCCCC
Q psy9679 82 LELRVGDLIYVHKKRDDG 99 (122)
Q Consensus 82 L~~~~gd~i~v~~~~~~g 99 (122)
+.+++||.|.|+...+.|
T Consensus 5 ~~I~kGD~V~Vi~G~dKG 22 (76)
T PRK12281 5 LKVKKGDMVKVIAGDDKG 22 (76)
T ss_pred ccccCCCEEEEeEcCCCC
Confidence 567888988888755444
No 85
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=20.95 E-value=1.8e+02 Score=17.41 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=17.4
Q ss_pred eCCCCCCCceecCCCCEEEEEEe
Q psy9679 73 PYPPNSEYELELRVGDLIYVHKK 95 (122)
Q Consensus 73 dy~~~~~~eL~~~~gd~i~v~~~ 95 (122)
.|.+.+ .+...+.||++.+.+.
T Consensus 46 K~~aHd-e~~~~k~GD~V~I~Et 67 (87)
T COG0186 46 KYHAHD-ECNEAKVGDIVRIAET 67 (87)
T ss_pred eeEeec-ccccCCCCCEEEEEEc
Confidence 466666 6788999999988774
No 86
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=20.35 E-value=97 Score=13.26 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=10.2
Q ss_pred cCCCCEEEEEEeCC
Q psy9679 84 LRVGDLIYVHKKRD 97 (122)
Q Consensus 84 ~~~gd~i~v~~~~~ 97 (122)
|..||.+.|+.-..
T Consensus 2 ~~~G~~V~I~~G~~ 15 (28)
T smart00739 2 FEVGDTVRVIAGPF 15 (28)
T ss_pred CCCCCEEEEeECCC
Confidence 57889998887443
Done!