RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9679
(122 letters)
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 92.2 bits (230), Expect = 2e-26
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+R + + P ++ EL L GD++++ K GW + +TGL P FV
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 92.4 bits (230), Expect = 3e-26
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ V +R + + P ++ EL L GD++++ K GW + +TGL P FV
Sbjct: 1 MAIVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 91.1 bits (227), Expect = 7e-26
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 88.1 bits (219), Expect = 1e-24
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ R I + P E ELEL V D + V + +D WY+ RTG G+FPA +
Sbjct: 6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 85.7 bits (213), Expect = 7e-24
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+R + Y E E+ R GD I + DDGW GT+QRTGRTG+ PA+++E
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 83.8 bits (208), Expect = 7e-23
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+R + Y P +E ELELR GD + V ++ DDGW+ G +RT + G FP ++V
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 83.2 bits (206), Expect = 1e-22
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 64 VRERFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+R R R I+PY + E+ GD+ VH + +DGW T RT GL VE
Sbjct: 4 MRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 81.4 bits (201), Expect = 1e-21
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRT 111
E + I PY P ++ ELEL GD I++ +GW GT TG +
Sbjct: 7 GSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCS 66
Query: 112 GLFPASFVE 120
GL P +++
Sbjct: 67 GLLPENYIT 75
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 80.1 bits (198), Expect = 2e-21
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 42 SASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWY 101
S+ S +++ PQ + E+ L+ D++ V ++ +DGW
Sbjct: 2 SSGSSGWQGLSSKGDLPQ--------VEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWL 52
Query: 102 KGTLQRTGRTGLFPASFVE 120
G R G TG FP F
Sbjct: 53 YGERLRDGETGWFPEDFAR 71
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 78.1 bits (193), Expect = 8e-21
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 60 PVPTVRERFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPAS 117
P+ + R R + I + ++ L + GDLI + + DGW+ G ++T G FP S
Sbjct: 2 PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61
Query: 118 FVE 120
+
Sbjct: 62 YTR 64
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 75.7 bits (187), Expect = 8e-20
Identities = 23/61 (37%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
P+ + + + + + Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++FV
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFV 59
Query: 120 E 120
+
Sbjct: 60 K 60
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 81.1 bits (199), Expect = 2e-19
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
I + P + E+ + GD+I V DG+ KG ++ GRTGL+P+ V
Sbjct: 442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVR 497
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 74.2 bits (183), Expect = 4e-19
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
F + Y + EL+L+ G+ I V K DGW KG TGRTG+FP+ +V
Sbjct: 8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 74.8 bits (184), Expect = 4e-19
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 51 PNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
+ + R R + Y P ++ ELEL+VGD+I V + ++GW++G L G+
Sbjct: 4 GGQQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GK 61
Query: 111 TGLFPASFVE 120
TG+FP++F++
Sbjct: 62 TGMFPSNFIK 71
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 73.5 bits (181), Expect = 7e-19
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 62 PTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ R R I+PY E+ GD+ VH + +DGW T RT GL VE
Sbjct: 4 GSSGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 72.2 bits (178), Expect = 2e-18
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E R + + P ++ EL++ G++++V KK +D W G+ GL P +++E
Sbjct: 8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF--NGQKGLVPCNYLE 60
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 72.1 bits (177), Expect = 4e-18
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASF 118
+ E + Y + +L L G LI + KK GW++G LQ + + G FPAS
Sbjct: 4 GSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASH 63
Query: 119 VES 121
V+
Sbjct: 64 VKL 66
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 71.2 bits (175), Expect = 5e-18
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 65 RERFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFVE 120
+++ + I P+ +++ L GD+I + + DGW G + G FP+S+ +
Sbjct: 6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 70.7 bits (174), Expect = 7e-18
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + +R + Y + EL+L GD++ V + +DGW+ G+ G P S++E
Sbjct: 5 SSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER--NGQRGFVPGSYLE 61
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 70.8 bits (174), Expect = 8e-18
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 65 RERFRCIVPYPP-NSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
++ + I P+ N++ L GD++ + + DGW G T G FP+S+ +
Sbjct: 7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 72.0 bits (176), Expect = 8e-18
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 25 SSSTQHNHRKSNSLDASSASSPV--ASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYEL 82
SS H+H S + S + V A + + + P + + Y EL
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDEL 61
Query: 83 ELRVGDLIYV-----HKKRDDGWYKGTLQR--------TGRTGLFPASFVE 120
+L+ GD++ V +++D+GW G + G+FP +F E
Sbjct: 62 QLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTE 112
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 71.0 bits (174), Expect = 1e-17
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 44 SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
SS + DP + + + Y E EL L G + V +K DGW++G
Sbjct: 2 SSGSSGDP------GERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG 55
Query: 104 TLQRTGRTGLFPASFVE 120
+ G+ G FP+++V
Sbjct: 56 SYN--GQVGWFPSNYVT 70
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 70.3 bits (173), Expect = 1e-17
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ R + S EL L+ GD++Y+HK+ D W +G GR G+FPA++VE
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVE 54
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 70.3 bits (173), Expect = 1e-17
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 57 KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
VR +F + +E EL GD+I+V + + GW++GT GRTG FP+
Sbjct: 2 SANSQLVVRAKF----NFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPS 55
Query: 117 SFVE 120
++V
Sbjct: 56 NYVR 59
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 69.5 bits (171), Expect = 2e-17
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
P P + + Y EL D+I + K+ GW+ G L+ G+ GLFP +
Sbjct: 2 PLGSPQCKALY----AYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNN 55
Query: 118 FVE 120
+V
Sbjct: 56 YVT 58
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 69.6 bits (171), Expect = 2e-17
Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + Y P +E ELEL+VGD+I ++++ ++GW+ GTL + GLFP++FV+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 54
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 69.3 bits (170), Expect = 3e-17
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 49 SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 108
S ++ P P + E+ I Y + E EL + G +IYV KK DDGWY+G +
Sbjct: 2 SSGSSGDPPWAPRSYL-EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN-- 58
Query: 109 GRTGLFPASFVE 120
G TGLFP ++VE
Sbjct: 59 GVTGLFPGNYVE 70
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 68.8 bits (169), Expect = 4e-17
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 57 KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
+ + V F Y +LE + GD+I V K ++ W +G + G+ G+FP
Sbjct: 1 QLKKGSQVEALF----SYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPK 54
Query: 117 SFVE 120
FVE
Sbjct: 55 VFVE 58
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 68.8 bits (169), Expect = 4e-17
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ R + Y P ++ ELEL+VGD+I V + ++GW++G L G+TG+FP++F++
Sbjct: 4 GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIK 60
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 69.8 bits (171), Expect = 4e-17
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 41 SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
+S + P PV V + Y N+E EL G LI V K D W
Sbjct: 14 ASHVKLLGPSSERATPAFHPVCQVIAMY----DYAANNEDELSFSKGQLINVMNKDDPDW 69
Query: 101 YKGTLQRTGRTGLFPASFVE 120
++G + G TGLFP+++V+
Sbjct: 70 WQGEIN--GVTGLFPSNYVK 87
Score = 28.1 bits (63), Expect = 0.28
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 103 GTLQRTGRTGLFPASFVE 120
G+ +G+ G FPAS V+
Sbjct: 1 GSSGSSGQKGWFPASHVK 18
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 68.8 bits (169), Expect = 5e-17
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 55 KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 114
P+ P P + + + + P ++ EL R GDLI + + D+ WY+G L G++G F
Sbjct: 4 DPEFMP-PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFF 60
Query: 115 PASFVE 120
P S+V+
Sbjct: 61 PLSYVQ 66
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 69.2 bits (169), Expect = 5e-17
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR---------------DDGW 100
P ++R + P+ +LEL GD++ V + GW
Sbjct: 2 PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61
Query: 101 YKGTLQRTGRTGLFPASFVE 120
G +RT + G FP ++VE
Sbjct: 62 MPGLNERTRQRGDFPGTYVE 81
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 68.5 bits (168), Expect = 7e-17
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 57 KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
+ + + + +E EL + GD+IYV + + GW++GTL GRTG FP+
Sbjct: 2 SSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPS 59
Query: 117 SFVE 120
++V
Sbjct: 60 NYVR 63
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 67.9 bits (167), Expect = 7e-17
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ FR + + P + EL GD+IY+ D W+KGT + GRTGL P+++V
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 56
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 67.9 bits (167), Expect = 8e-17
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 64 VRERFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + R + NS+ EL + GD+I++ + + W +GT++ G TG+FP SFV+
Sbjct: 1 LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 68.4 bits (168), Expect = 8e-17
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ +++ E+ R G+ I + ++ D+ WY+G + T R G+FP ++V+
Sbjct: 8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 67.9 bits (167), Expect = 8e-17
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 69 RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
IV Y + EL + VG++I +K D GW++G + GR GLFP +FV
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNFVR 54
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 68.5 bits (168), Expect = 8e-17
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 44 SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
+ V ++ P F + NS+ EL + GD+I++ + + W +G
Sbjct: 2 NHKVHH-HHHHHMDRMAAPRAEALF----DFTGNSKLELNFKAGDVIFLLSRINKDWLEG 56
Query: 104 TLQRTGRTGLFPASFVE 120
T++ G TG+FP SFV+
Sbjct: 57 TVR--GATGIFPLSFVK 71
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 71.2 bits (174), Expect = 1e-16
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
P P + + +R I Y S E+ L GD++ V +K + GW+ ++ + G P
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGWIP 59
Query: 116 ASFVE 120
ASF+E
Sbjct: 60 ASFLE 64
Score = 56.5 bits (136), Expect = 3e-11
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 47 VASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 106
+ + + + E + I Y E+ L G+ + V K DGW+
Sbjct: 63 LEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 122
Query: 107 RTGRTGLFPASFVE 120
TG FP+ +++
Sbjct: 123 --DVTGYFPSMYLQ 134
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 67.6 bits (166), Expect = 1e-16
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y + EL D I + DD W+ G L++ G GLFP+++V
Sbjct: 9 YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 67.6 bits (166), Expect = 1e-16
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
VR +F + +E EL GD+I+V + + GW++GT GRTG FP+++V
Sbjct: 3 LGSVVRAKF----NFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYV 56
Query: 120 E 120
Sbjct: 57 R 57
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 67.8 bits (166), Expect = 1e-16
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 58 PQPVPTVRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
R R + P+ L+L+ GD+I + K G + G L + G F
Sbjct: 2 SSGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFK 59
Query: 116 ASFVE 120
+V+
Sbjct: 60 FIYVD 64
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 67.8 bits (165), Expect = 2e-16
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 112 GLFPASFVE 120
G FP ++VE
Sbjct: 67 GDFPGTYVE 75
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 67.8 bits (166), Expect = 2e-16
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 44 SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
SS + P + ++ + + E EL R G+ I + +K ++ WY+G
Sbjct: 2 SSGSSGKP--PTYQVLEYGEAVAQY----TFKGDLEVELSFRKGEHICLIRKVNENWYEG 55
Query: 104 TLQRTGRTGLFPASFVE 120
+ TGR G+FPAS+V+
Sbjct: 56 RITGTGRQGIFPASYVQ 72
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 66.8 bits (164), Expect = 2e-16
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
P V+ + Y + EL + GD I VH+K GW++G L G+ G PA++V
Sbjct: 2 PGIQVKALY----DYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELN--GKRGWVPANYV 55
Query: 120 E 120
+
Sbjct: 56 Q 56
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 67.0 bits (164), Expect = 2e-16
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 52 NNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 111
++ + R I + + EL + G++I V D W+KG
Sbjct: 4 HHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--QGI 61
Query: 112 GLFPASFVES 121
GLFP++FV +
Sbjct: 62 GLFPSNFVTA 71
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 67.0 bits (164), Expect = 3e-16
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 69 RCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ I P + + L L VGD++ V + +G ++G + GR GLFP + V+
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 56
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 66.5 bits (163), Expect = 3e-16
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
P + + Y + E+ D+I + DDGW++G + GR GLFPA+
Sbjct: 2 PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPAN 59
Query: 118 FVE 120
+VE
Sbjct: 60 YVE 62
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 66.5 bits (163), Expect = 3e-16
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 67 RFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
F +P S EL L+ GD+IY+ ++ GW G L + G P ++++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 67.1 bits (164), Expect = 4e-16
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 49 SDPNNRKPKPQPVPTVRERFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQ 106
+ P P + I P + + L L VGD++ V + +G ++G +
Sbjct: 1 GSSGSSGPLPST-QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN 59
Query: 107 RTGRTGLFPASFVE 120
GR GLFP + V+
Sbjct: 60 --GRKGLFPFTHVK 71
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 66.6 bits (163), Expect = 4e-16
Identities = 13/65 (20%), Positives = 24/65 (36%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
T F + Y +E +L G+ + + W++ TG TG P
Sbjct: 6 TLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIP 65
Query: 116 ASFVE 120
+++V
Sbjct: 66 SNYVA 70
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 66.1 bits (162), Expect = 5e-16
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ +++ E+ R G+ I + ++ D+ WY+G + T R G+FP ++V+
Sbjct: 15 FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 66.2 bits (162), Expect = 5e-16
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
+ V F Y + EL R GD++ +H++ W++G G GL P
Sbjct: 5 SSGEGVVEAVACF----AYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIP 58
Query: 116 ASFVE 120
++
Sbjct: 59 HKYIT 63
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 65.6 bits (161), Expect = 6e-16
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ P + +L L+ GD + + +K WYKG+ GRTG+FPA++V+
Sbjct: 10 QFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN--GRTGIFPANYVK 55
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 66.3 bits (162), Expect = 7e-16
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 40 ASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG 99
SS SS + Q V + R + + + EL + G++I V D
Sbjct: 1 GSSGSSG---------SEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDAN 51
Query: 100 WYKGTLQRTGRTGLFPASFVE 120
W+KG GLFP++FV
Sbjct: 52 WWKGENH--RGIGLFPSNFVT 70
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 67.1 bits (164), Expect = 7e-16
Identities = 14/81 (17%), Positives = 32/81 (39%)
Query: 40 ASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG 99
+S +S +S P + F + Y + +L + G+ + +
Sbjct: 2 SSGSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGD 61
Query: 100 WYKGTLQRTGRTGLFPASFVE 120
W++ TG++G P+++V
Sbjct: 62 WWEARSIATGKSGYIPSNYVV 82
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 65.8 bits (161), Expect = 8e-16
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + + + EL L GD++ +H+K+++GW+ G+L G+ G FPA++VE
Sbjct: 4 GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYVE 60
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 65.4 bits (160), Expect = 9e-16
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ E++ + Y EL L+ G+++ V +K + GW+ + G PA+++E
Sbjct: 5 SSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS--EEQGWVPATYLE 61
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 66.0 bits (161), Expect = 9e-16
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 44 SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK-----RDD 98
SS V N + + + Y + EL LR GD + V + D+
Sbjct: 8 SSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDE 67
Query: 99 GWYKGTLQRTGRTGLFPASFVE 120
GW+ G L GR G+FP+++V
Sbjct: 68 GWWTGQLPS-GRVGVFPSNYVA 88
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 65.3 bits (160), Expect = 9e-16
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
P R + + P ++ EL + GD+I + + D+ WY+G + G +G FP ++VE
Sbjct: 4 PCCRGLY----DFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 65.3 bits (160), Expect = 9e-16
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ FR + + P + EL GD+IY+ D W+KGT + GRTGL P+++V
Sbjct: 8 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 60
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 65.3 bits (160), Expect = 1e-15
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
T +E + Y S EL ++ GD++ + + W+K + GR G PA++++
Sbjct: 3 ETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLK 59
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 65.4 bits (160), Expect = 1e-15
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGL 113
+ + + F PY ++ EL ++ GD++ + K D GW++G L GR G+
Sbjct: 4 SRTKSKDYCKVIF----PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGV 57
Query: 114 FPASFVE 120
FP +FV+
Sbjct: 58 FPDNFVK 64
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 64.9 bits (159), Expect = 1e-15
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 57 KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLF 114
R F PY +E EL R G++I++ K + GW+KG L G+ G+F
Sbjct: 2 AMGAKEYCRTLF----PYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVF 55
Query: 115 PASFVE 120
P +F
Sbjct: 56 PDNFAV 61
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 65.3 bits (160), Expect = 1e-15
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + EL L+ GD++Y++K+ D WY+G GR G+FP +++E
Sbjct: 8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTYIE 60
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 65.0 bits (159), Expect = 1e-15
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 69 RCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R I PN+ + L L VG+L+ V K G ++G G+ G FP + V
Sbjct: 10 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 61
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 64.9 bits (159), Expect = 1e-15
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + + P EL + GD+I + K D W++G L R G+FP+++V
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVC 55
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 64.9 bits (159), Expect = 1e-15
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
P + Y + +L+ GD+I + ++ D+ WY+G + G +G+FPAS
Sbjct: 4 GSSGPRAKALC----NYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN--GVSGIFPAS 57
Query: 118 FVE 120
VE
Sbjct: 58 SVE 60
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 65.1 bits (159), Expect = 2e-15
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 41 SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
SS SS + N T + Y + E+ D+I + DDGW
Sbjct: 2 SSGSSGTYDEYEN-----DLGITAVALY----DYQAAGDDEISFDPDDIITNIEMIDDGW 52
Query: 101 YKGTLQRTGRTGLFPASFVE 120
++G + GR GLFPA++VE
Sbjct: 53 WRGVCK--GRYGLFPANYVE 70
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 64.2 bits (157), Expect = 3e-15
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 59 QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
VR + + + EL + G+LI V D W++G TGLFP++F
Sbjct: 3 HMARRVRALY----DFEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNF 56
Query: 119 VES 121
V +
Sbjct: 57 VTT 59
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 64.3 bits (157), Expect = 3e-15
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ E++ + PY S+ E+ G + V +K +GW+ G+ G PAS+++
Sbjct: 5 SSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPASYLK 61
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 64.3 bits (157), Expect = 3e-15
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + F + Y +E +L G+ + + W++ TG TG P+ ++
Sbjct: 1 MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLA 60
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 63.7 bits (156), Expect = 4e-15
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + E EL R G+++ V + W+ G L + GLFPA++V
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVA 54
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 63.9 bits (156), Expect = 4e-15
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ T +E + Y S E+ ++ GD++ + + W+K + R G PA++V+
Sbjct: 1 MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVK 58
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 63.8 bits (156), Expect = 4e-15
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
P R + + P +E EL + GD+I + + D+ WY+G L G +G FP +
Sbjct: 4 GSSGPCCRALY----DFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPIN 57
Query: 118 FVE 120
+VE
Sbjct: 58 YVE 60
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 63.9 bits (156), Expect = 4e-15
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 59 QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPAS 117
R + I +++ EL G++I V + D W+ G ++ + R G+FP S
Sbjct: 4 GSSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVS 63
Query: 118 FVE 120
FV
Sbjct: 64 FVH 66
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 63.8 bits (156), Expect = 5e-15
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + P +LE+R GD+I + + ++ W+KG +Q R G FPA+FV+
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFVQ 60
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 68.5 bits (166), Expect = 5e-15
Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 2/110 (1%)
Query: 11 HYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRC 70
YV + A S S+ + P A N + R
Sbjct: 185 PYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQ 244
Query: 71 IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ L L VG+L+ V K G ++G G+ G FP + V
Sbjct: 245 KRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 292
Score = 54.2 bits (129), Expect = 6e-10
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 1 MLVNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQP 60
++N +G P P S S + ++ +SL A + +P
Sbjct: 60 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 61 ----------VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
E R + + N E +L + GD++ + K ++ W+ G+
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGK 178
Query: 111 TGLFPASFVE 120
G+ P +VE
Sbjct: 179 RGMIPVPYVE 188
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 63.1 bits (154), Expect = 7e-15
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
+ E + + + +L + G+++ V +K+ DGW+ + G GL P +
Sbjct: 3 ESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRT 61
Query: 118 FVE 120
++E
Sbjct: 62 YLE 64
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 63.0 bits (154), Expect = 7e-15
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ P + EL R GD I+V D W+KG G+TG+FP ++V
Sbjct: 10 DFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVT 55
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 63.1 bits (154), Expect = 8e-15
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 66 ERFRCIVPYPPN-SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+F +P + S EL L+ GD++++ + GW L + G P +++
Sbjct: 3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 62.5 bits (153), Expect = 8e-15
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
I Y + E+ + GD+I V + D GW G G GLFP S+ +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYCK 54
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 62.7 bits (153), Expect = 1e-14
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 59 QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
V T + Y N EL + GD+I V K ++ W+ G++ + G+ G FPA+
Sbjct: 1 HQVDTA-PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANH 58
Query: 119 VES 121
V S
Sbjct: 59 VAS 61
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 62.2 bits (152), Expect = 1e-14
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEKY 57
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 62.2 bits (152), Expect = 1e-14
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
+F Y S EL + G + ++ + + W++G G GL P
Sbjct: 3 LGSPEFAIAKF----DYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQ 56
Query: 118 FVE 120
++
Sbjct: 57 YIV 59
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 62.7 bits (153), Expect = 1e-14
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
+ + + + EL R D+I + ++D+ + G L G G FPA
Sbjct: 4 GSSGRRAKALL----DFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAK 57
Query: 118 FVE 120
FVE
Sbjct: 58 FVE 60
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 62.3 bits (152), Expect = 1e-14
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTG 112
V V+ + Y ++ EL G +I + K DDG+++G GR G
Sbjct: 3 SGSSGVCFVKALY----DYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN--GRIG 56
Query: 113 LFPASFVE 120
+FP+ VE
Sbjct: 57 VFPSVLVE 64
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 62.2 bits (152), Expect = 2e-14
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ Y + EL +RVG++I V K +++GW +G L GR G+FP +FV+
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVK 55
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 62.8 bits (153), Expect = 2e-14
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 44 SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
SP + N+ P + + + Y +L + GD + V ++ W+K
Sbjct: 4 GSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKA 62
Query: 104 TLQRTGRTGLFPASFVE 120
T + G P+++V
Sbjct: 63 RSLATRKEGYIPSNYVA 79
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 61.8 bits (151), Expect = 2e-14
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
ER + S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F+E
Sbjct: 3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 62.3 bits (152), Expect = 2e-14
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASF 118
T + + + + EL G + VH ++ GW +GTL G+TGL P ++
Sbjct: 5 SSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENY 62
Query: 119 VE 120
VE
Sbjct: 63 VE 64
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 62.4 bits (152), Expect = 2e-14
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 76 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
+ L LR GD++ V+ D G+Y G L G GL PA ++
Sbjct: 25 GQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLVPAHLLD 68
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 67.1 bits (162), Expect = 2e-14
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 24 SSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELE 83
S TQ + ++++ S ++ ++ R R + Y EL
Sbjct: 387 SYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELS 446
Query: 84 LRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
+ GD + + D+ GW KG L G+ GL+PA++VE
Sbjct: 447 FKAGDELTKMEDEDEQGWCKGRLDN-GQVGLYPANYVE 483
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 61.5 bits (150), Expect = 3e-14
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVE 120
+ + I PY ++ EL ++ GD++ + K D GW++G L GR G+FP +FV+
Sbjct: 3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 57
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 62.0 bits (151), Expect = 3e-14
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 52 NNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 111
++ T +E + Y S E+ ++ GD++ + + W+K + R
Sbjct: 4 SHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQ 61
Query: 112 GLFPASFVE 120
G PA++V+
Sbjct: 62 GFVPAAYVK 70
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 61.5 bits (150), Expect = 3e-14
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + Y EL G LI+ K GW+KG T FP+++VE
Sbjct: 8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNYVE 61
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 61.5 bits (150), Expect = 3e-14
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASFVE 120
T + + + Y E EL +I +K+D GW++G G+ L FP+++VE
Sbjct: 1 TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYG--GKKQLWFPSNYVE 57
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 61.6 bits (150), Expect = 3e-14
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR---TGRTG 112
+P+ V +F PY + E +L I V D WY G Q G
Sbjct: 2 SEPEVPFKVVAQF----PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEG 57
Query: 113 LFPASFVE 120
+FP SFV
Sbjct: 58 IFPKSFVA 65
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 61.5 bits (150), Expect = 3e-14
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFP 115
+ F PY ++ EL ++ GD++ + K D GW++G L GR G+FP
Sbjct: 4 GSSGDYCKVIF----PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFP 57
Query: 116 ASFVE 120
+FV+
Sbjct: 58 DNFVK 62
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 61.2 bits (149), Expect = 5e-14
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASFVE 120
PT + + + Y E EL +I +K++ GW++G G+ L FP+++VE
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG--GKKQLWFPSNYVE 60
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 60.7 bits (148), Expect = 5e-14
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
R R + Y + EL + GD + + D GW +G L G+ GL+PA++VE
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS-GQLGLYPANYVE 58
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 61.6 bits (150), Expect = 5e-14
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
+ + + + + EL + GD+I V + W+ G + G FP
Sbjct: 5 SSGDSIVSAEAVW----DHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFP 58
Query: 116 ASFVE 120
ASFV
Sbjct: 59 ASFVR 63
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 62.4 bits (151), Expect = 5e-14
Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 15 RPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERF-RCIVP 73
R +D + + ++ ++ D S SS + ++ +ER I
Sbjct: 8 RLLDLENIQIPDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYN 67
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFVE 120
+ + +L L++GD++ + + WY+G L + G+FP SF+
Sbjct: 68 FQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 114
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 61.3 bits (149), Expect = 5e-14
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+E + Y S E+ ++ GD++ + + W+K + R G PA++V+
Sbjct: 2 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVK 55
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 61.2 bits (149), Expect = 5e-14
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFP 115
T R+ + EL LR GD++ ++ + D GW+KG GR G FP
Sbjct: 4 GSSGGTAVARY----NFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFP 57
Query: 116 ASFVE 120
+++VE
Sbjct: 58 STYVE 62
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 61.2 bits (149), Expect = 6e-14
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 57 KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFP 115
P P + R + Y + L + D+I + K + W+ G L G+ G FP
Sbjct: 2 GPLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFP 59
Query: 116 ASFVE 120
VE
Sbjct: 60 VDHVE 64
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 60.8 bits (148), Expect = 6e-14
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y + EL + G + ++++ D W++G G GL P ++
Sbjct: 18 YVGRTARELSFKKGASLLLYQRASDDWWEGRHN--GIDGLIPHQYIV 62
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 61.2 bits (149), Expect = 6e-14
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
F + Y +L G+ + + W++ TG TG P+++V
Sbjct: 7 TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVA 61
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 60.5 bits (147), Expect = 9e-14
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 76 PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
+ E EL GD+I V + D DG+Y G L G+ GL P++F+E
Sbjct: 25 VDVEAELTFCTGDIITVFGEIDEDGFYYGELN--GQKGLVPSNFLE 68
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 59.9 bits (146), Expect = 1e-13
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVE 57
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 64.5 bits (156), Expect = 1e-13
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 4 NPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPT 63
N G VP + E + +S+ +S + S + + P
Sbjct: 187 NALGT-TGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPR 245
Query: 64 VRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + PN +L ++ G + V +K +G YK L G+ G P +++
Sbjct: 246 LPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYLR 302
Score = 57.5 bits (138), Expect = 3e-11
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 36 NSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK 95
+ A + P E + E +L G+ + + K
Sbjct: 119 PDIPALLNHFKMRVLTEASLLAAYKKPI-IEVVVGTFKFTGERETDLPFEQGERLEILSK 177
Query: 96 RDDGWYKGTLQRTGRTGLFPASFVE 120
+ W++ G TGL PA++V+
Sbjct: 178 TNQDWWEARN-ALGTTGLVPANYVQ 201
Score = 25.6 bits (55), Expect = 5.2
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 78 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
E LI + ++DG ++ FP
Sbjct: 84 EADEGNAVCHYLIERGEPKEDGTAAAGVK--IANQSFP 119
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 61.1 bits (148), Expect = 1e-13
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 51 PNNRKPKPQPVPTVRERFRCIVPYPP------NSEYELELRVGDLIYVHKKRD-DGWYKG 103
+ Q Y P N E EL L G +YV+ D DG+Y+G
Sbjct: 3 SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62
Query: 104 TLQRTGRTGLFPASFVE 120
L G+ GL P++FV+
Sbjct: 63 EL-LDGQRGLVPSNFVD 78
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 60.0 bits (146), Expect = 1e-13
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E F I Y E +L G+ I + ++ W+ G G G PA+ V
Sbjct: 8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANHVG 60
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 60.0 bits (146), Expect = 1e-13
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
++R + S+ EL ++ GD +Y+ K+ W+ L +G++GL PA F+E
Sbjct: 6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 60.1 bits (146), Expect = 2e-13
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 40 ASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--D 97
SS SS + + + R + Y + EL L ++I V D
Sbjct: 1 GSSGSSGLNDLKE---------SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMD 51
Query: 98 DGWYKGTLQRTGRTGLFPASFVE 120
W G + G P +++E
Sbjct: 52 SDWLMGERG--NQKGKVPITYLE 72
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 59.6 bits (145), Expect = 2e-13
Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ ++ + Y P + +L+LR GD ++ ++ + W++ + G+ G P+++V
Sbjct: 3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYV 61
Query: 120 E 120
Sbjct: 62 T 62
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 63.9 bits (154), Expect = 2e-13
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 3/118 (2%)
Query: 3 VNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVP 62
V + + S H + + + A S +
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSG-SPGAAITPLPSTQNG 236
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
V + + L L VGD++ V + +G ++G + GR GLFP + V+
Sbjct: 237 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVK 292
Score = 52.3 bits (124), Expect = 3e-09
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 51 PNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
+ P E R + +P N +L + G+++ + +K ++ W+ + GR
Sbjct: 111 GSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARN-KDGR 169
Query: 111 TGLFPASFVESF 122
G+ P +VE
Sbjct: 170 VGMIPVPYVEKL 181
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 59.9 bits (145), Expect = 2e-13
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 58 PQPVPTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ----RTGRTG 112
VP + R + + + L +R GD+I V ++ DG +KG + T R G
Sbjct: 11 SGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIG 70
Query: 113 LFPASFVE 120
FP VE
Sbjct: 71 YFPPGIVE 78
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 60.2 bits (146), Expect = 3e-13
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASFVE 120
+ EL VG+ +++ + W+ R G GL P FV
Sbjct: 14 FKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 58.7 bits (143), Expect = 3e-13
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
+ + Y + E+ + GD I + + GW K TG TGL P +++
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 60.9 bits (147), Expect = 3e-13
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPA 116
P T + R+ + EL L+ GD+I + +KK GW++G + GR G FP+
Sbjct: 2 PGTFGTAKARY----DFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPS 55
Query: 117 SFVE 120
++VE
Sbjct: 56 NYVE 59
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 58.9 bits (143), Expect = 4e-13
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 48 ASDPNNRKPKPQPVPTVRERFRCIV--PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGT 104
S ++ + + + CI + EL R GD++ + + WY+
Sbjct: 1 GSSGSSGRMPTRRWAPGTQ---CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVK 57
Query: 105 LQRTGRTGLFPASFVE 120
+G+ GL A +
Sbjct: 58 HHTSGQEGLLAAGALR 73
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 57.9 bits (141), Expect = 7e-13
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVE 120
+ + + +L R GD+I + KK D + W+ G + GR G+FPA++VE
Sbjct: 4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVE 58
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 58.1 bits (141), Expect = 7e-13
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
+ + + L D+I V ++ + W+ G + G G FP
Sbjct: 5 SSGVENLKAQALC----SWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFP 57
Query: 116 ASFVE 120
S+V+
Sbjct: 58 KSYVK 62
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 58.3 bits (141), Expect = 7e-13
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ Y + E+ G + V +K++ GW+ G P+ ++
Sbjct: 9 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG--ELEGWAPSHYLV 61
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 58.0 bits (141), Expect = 8e-13
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E + + PY +L G+ I V +K D W+ G++ R+G+FP+++V+
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVK 60
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 58.2 bits (141), Expect = 9e-13
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 52 NNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 111
+ P P P + + YP R G+ + V + GW+K TGR
Sbjct: 4 GSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRE 62
Query: 112 GLFPASFVE 120
P V
Sbjct: 63 SYIPGICVA 71
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 58.3 bits (141), Expect = 1e-12
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVE 120
+ +R + P+ + E+ GD+I V +K + GW G+ Q G G FP ++VE
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVE 60
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 57.7 bits (140), Expect = 1e-12
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 55 KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGL 113
+ ++ + ++ EL + GD++ V +++ D WYK L G+ G
Sbjct: 3 RRASVGSMEAIAKY----DFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGF 56
Query: 114 FPASFVE 120
P +++E
Sbjct: 57 IPKNYIE 63
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 57.8 bits (140), Expect = 1e-12
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 41 SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-- 98
SS SS + R V + + +L + GD I V K D
Sbjct: 2 SSGSSG-----HERVGNLNQPIEVTALY----SFEGQQPGDLNFQAGDRITVISKTDSHF 52
Query: 99 GWYKGTLQRTGRTGLFPASFVE 120
W++G L+ G+TG+FPA++V
Sbjct: 53 DWWEGKLR--GQTGIFPANYVT 72
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 57.4 bits (139), Expect = 1e-12
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT------GRTGLFPASF 118
+E + Y S E+ ++ GD++ + + W+K ++ T R G PA++
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60
Query: 119 VE 120
V+
Sbjct: 61 VK 62
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 57.3 bits (139), Expect = 1e-12
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLF 114
R + P+ EL GD++ + ++ +GW+K L GR GL
Sbjct: 4 GSSGLLARALY----DNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLA 57
Query: 115 PASFVE 120
PA+ ++
Sbjct: 58 PANRLQ 63
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 57.4 bits (139), Expect = 2e-12
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 49 SDPNNRKPKPQPVPTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-----DGWYK 102
S+ + P + R + + P N E E+ L+ GDL+ + K+D W+K
Sbjct: 2 SEFGSEPIDPSKLEFARALY----DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57
Query: 103 GTLQRTGRTGLFPASFVE 120
+ G G P +++E
Sbjct: 58 VRT-KNGNIGYIPYNYIE 74
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 57.6 bits (139), Expect = 2e-12
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 45 SPVASDPNNRKPKPQPVPTVRERF----RCIVPYPPNSEYELELRVGDLIYVHKKRD-DG 99
S +S + + P F + P P +E EL + G +I V+ +D DG
Sbjct: 2 SSGSSGTDPGAEEL-PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG 60
Query: 100 WYKGTLQRTGRTGLFPASFVE 120
+Y+G R GL P + V
Sbjct: 61 FYRGET--CARLGLIPCNMVS 79
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 56.2 bits (136), Expect = 3e-12
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 81 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E+ ++ GD++ + + W+K + R G PA++V+
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVK 42
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 59.3 bits (143), Expect = 4e-12
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 27 STQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRV 86
N L S+ V+ + + VP + + + P + EL R
Sbjct: 120 LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRR 179
Query: 87 GDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
GD I+V D W+KG G+TG+FP ++V
Sbjct: 180 GDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVT 211
Score = 45.8 bits (108), Expect = 3e-07
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
+ ++ EL + GD++ V + D WYK L G+ G P +++E
Sbjct: 8 DFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIE 54
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 58.6 bits (141), Expect = 5e-12
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 58 PQPVPTVRERF-RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFP 115
+ER I + + +L L++GD++ + + WY+G L + G+FP
Sbjct: 9 APWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFP 67
Query: 116 ASFVE 120
SF+
Sbjct: 68 KSFIH 72
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 56.4 bits (136), Expect = 7e-12
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 49 SDPNNRKPKPQPVPTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-----DGWYK 102
S+ + P + R + + P N E E+ L+ GDL+ + K+D W+K
Sbjct: 2 SEFGSEPIDPSKLEFARALY----DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57
Query: 103 GTLQRTGRTGLFPASFVE 120
+ G G P +++E
Sbjct: 58 VRT-KNGNIGYIPYNYIE 74
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 59.6 bits (143), Expect = 7e-12
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 29 QHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGD 88
+ + R + + NS+ EL + GD
Sbjct: 138 SPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGD 197
Query: 89 LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+I++ + + W +GT++ G TG+FP SFV+
Sbjct: 198 VIFLLSRINKDWLEGTVR--GATGIFPLSFVK 227
Score = 29.6 bits (65), Expect = 0.22
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 62 PTVRERFRCIVPYPPNSEYELELR--VGDLIYVHKKRDDGWYKGTLQRT-GRTGLFP 115
P +++ + L R GDL+ + D + + LFP
Sbjct: 267 PLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFP 323
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 55.5 bits (134), Expect = 7e-12
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
PY E+ ++ GD++ + + W+K + R G PA++V+
Sbjct: 8 PYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVK 52
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 55.0 bits (133), Expect = 1e-11
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQRTGRTGLFPASFVE 120
S EL R GD++ V ++ DGW+ +L GR G+ P + ++
Sbjct: 11 DNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLK 59
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 56.5 bits (136), Expect = 1e-11
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPASFVE 120
+ + EL++ G+ + + D W+ + R G GL P S+V
Sbjct: 12 FKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 55.5 bits (134), Expect = 1e-11
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 48 ASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 107
+S + + + Y N EL LR + + + W++ R
Sbjct: 2 SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-R 60
Query: 108 TGRTGLFPASFVE 120
G G P+S++
Sbjct: 61 NGHEGYVPSSYLV 73
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 55.5 bits (134), Expect = 1e-11
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFV 119
+ + Y ++ L GDLI + + GW G+ GR+GLFPA V
Sbjct: 5 SSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--GRSGLFPADIV 62
Query: 120 E 120
+
Sbjct: 63 Q 63
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 55.1 bits (133), Expect = 1e-11
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 75 PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFVE 120
P N E E+ L+ GDL+ + K+D W+K + G G P +++E
Sbjct: 18 PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 67
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 54.6 bits (132), Expect = 2e-11
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + PY +L + G+ + V ++ W+K T + G P+++V
Sbjct: 8 DIVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVA 61
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 54.2 bits (131), Expect = 2e-11
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
P + Y P+ + +L G+ + + ++ + W+K TG+ G P +FV
Sbjct: 3 PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 60
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 54.2 bits (131), Expect = 2e-11
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E + + ++L L G + +K D W++ + G G P+++V
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVT 56
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 53.7 bits (129), Expect = 3e-11
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y E EL L G + V + DGW++G+ G+ G FP+++V
Sbjct: 9 AYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN--GQIGWFPSNYVL 54
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 53.5 bits (129), Expect = 4e-11
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLF 114
+ + ++ + + ++ EL R GD+ +V +K + W+ L G G
Sbjct: 3 SRDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYV 62
Query: 115 PASFVE 120
P +++
Sbjct: 63 PHNYLA 68
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 53.4 bits (129), Expect = 5e-11
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPA 116
Q + +E +L GD++ + D WYK + GR G+ PA
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPA 62
Query: 117 SFVE 120
++V+
Sbjct: 63 NYVQ 66
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 53.2 bits (128), Expect = 6e-11
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRTGLFPASFV 119
+++ + I Y + E + G + V ++ +GW+ + G P++++
Sbjct: 7 GNLKDVYVSIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYL 65
Query: 120 ES 121
E
Sbjct: 66 EK 67
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 53.6 bits (129), Expect = 7e-11
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y S +L + GD + V ++ W+K T + G P+++V
Sbjct: 11 DYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVA 57
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 55.6 bits (133), Expect = 8e-11
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 5/114 (4%)
Query: 7 GKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRE 66
+I D + + +L + K + V
Sbjct: 64 HYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
F + E +L G+ + + K + W++ G TGL PA++V+
Sbjct: 124 TF----KFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYVQ 172
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 52.6 bits (127), Expect = 8e-11
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + + + EL + +++ V + W + R+G+ G P + +
Sbjct: 8 KYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNILG 60
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 53.1 bits (128), Expect = 9e-11
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 81 ELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
EL + G++I V GW +G + G GL P +VE
Sbjct: 26 ELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLVPTDYVE 65
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 52.5 bits (126), Expect = 1e-10
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 81 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E+ ++ GD++ + + W+K + R G PA++V+
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVK 44
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 51.9 bits (125), Expect = 2e-10
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + + + + EL + G+ + V W GR+G P++ +E
Sbjct: 4 GSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKN--EAGRSGYIPSNILE 60
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 52.1 bits (125), Expect = 3e-10
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 49 SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYKGT 104
S + V R + S+ E+ R GD++ + K GW +
Sbjct: 3 SGSSGTNWASGEDDHVV--ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60
Query: 105 LQRTGRTGLFPASFVE 120
L TGL PA++V+
Sbjct: 61 L-DGQTTGLIPANYVK 75
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 51.2 bits (123), Expect = 3e-10
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 62 PTVRERFRCIVPYPPNSE--YELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + + PY + + YE+ +++ V + W+K G TG+ P+++V
Sbjct: 2 DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRAN-GETGIIPSNYV 59
Query: 120 E 120
+
Sbjct: 60 Q 60
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 51.3 bits (123), Expect = 4e-10
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-------GRTGLFPASF 118
+ F + Y + +L R GD + V +GW+ G P+++
Sbjct: 8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67
Query: 119 VE 120
V
Sbjct: 68 VA 69
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 51.2 bits (123), Expect = 5e-10
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 46 PVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 105
P+ P + + Q + Y N EL LR + Y+ + W++
Sbjct: 3 PLPPTPEDNRRSFQEPE--ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD 60
Query: 106 QRTGRTGLFPASFVE 120
+ G G P+S++
Sbjct: 61 -KNGHEGYAPSSYLV 74
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 50.8 bits (122), Expect = 5e-10
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLF 114
+ + + Y + EL + +++ V + D + W K + G+ G
Sbjct: 4 GSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVGYV 62
Query: 115 PASFVE 120
P +++
Sbjct: 63 PEKYLQ 68
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 50.0 bits (120), Expect = 9e-10
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 69 RCIV--PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
C+ + +SE + + G+ + + ++ DGW + + G G P S++
Sbjct: 9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSYLR 62
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 50.0 bits (120), Expect = 9e-10
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 59 QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPA 116
Q + + + P+ +E EL G+ + V +K D W+K R G+ GL P
Sbjct: 1 QGSRVL-HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPK 58
Query: 117 SFVE 120
++V
Sbjct: 59 NYVV 62
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 49.9 bits (120), Expect = 1e-09
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFVE 120
F + + + + L + G+ + V +G W + G P++++
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYIT 59
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 49.8 bits (119), Expect = 2e-09
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGL 113
V + + P+ +E EL G+ + V +K D W+K R G+ GL
Sbjct: 8 LSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGL 66
Query: 114 FPASFVE 120
P ++V
Sbjct: 67 VPKNYVV 73
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 48.8 bits (116), Expect = 3e-09
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 49 SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQR 107
+ R P V + + I P P L L GD++ + K + W++G
Sbjct: 2 AQDKKRNELGLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTA 61
Query: 108 TGRTGLFPASFVE 120
T G FP + V
Sbjct: 62 TNEVGWFPCNRVH 74
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 48.1 bits (115), Expect = 7e-09
Identities = 7/69 (10%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRT 111
+ + + + + EL + + + + +D W+ + G+
Sbjct: 4 GSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKK 61
Query: 112 GLFPASFVE 120
G P++++
Sbjct: 62 GYVPSNYIR 70
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 47.5 bits (113), Expect = 1e-08
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 41 SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
+P + T Y + EL+++ + +++ W
Sbjct: 7 PPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-W 65
Query: 101 YKGTLQRTGRTGLFPASFVE 120
++ RTG P+++VE
Sbjct: 66 WRVR-NAANRTGYVPSNYVE 84
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 47.3 bits (112), Expect = 1e-08
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASF 118
P V + + I P P L L GD++ + K + W++G T G FP +
Sbjct: 5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 64
Query: 119 VE 120
V
Sbjct: 65 VH 66
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 45.8 bits (109), Expect = 4e-08
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y E EL+++ + +++ W++ +TG P+++V
Sbjct: 2 STMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVR-NSMNKTGFVPSNYV 59
Query: 120 E 120
E
Sbjct: 60 E 60
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 45.3 bits (108), Expect = 5e-08
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
++ + + + EL + D++ + R W+K +G +G P + ++
Sbjct: 1 KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVR-NASGDSGFVPNNILD 54
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 45.5 bits (108), Expect = 6e-08
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 105
K T +E + Y S E+ ++ GD++ + + W+K +
Sbjct: 12 VKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 45.3 bits (108), Expect = 6e-08
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y + EL+++ + +++ W++ RTG P+++VE
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVR-NAANRTGYVPSNYVE 57
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 48.0 bits (113), Expect = 6e-08
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 51 PNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
+ + E R + + N E +L + GD++ + K ++ W+ G+
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGK 180
Query: 111 TGLFPASFVESF 122
G+ P +VE +
Sbjct: 181 RGMIPVPYVEKY 192
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 44.6 bits (106), Expect = 1e-07
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ C + + EL ++ D++ V W+K G+ G P + +
Sbjct: 5 SGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRD-PAGQEGYVPYNILT 61
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 46.9 bits (111), Expect = 2e-07
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 37 SLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR 96
++ +S S + + + EL + GD+I V
Sbjct: 2 AMSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDAT 61
Query: 97 DDGWYKGTLQRTGRTGLFPASFVESF 122
+ W+ G + G FPASFV
Sbjct: 62 NREWWWGRV--ADGEGWFPASFVRLR 85
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 45.6 bits (108), Expect = 7e-07
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 2/118 (1%)
Query: 4 NPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPT 63
N +G P S+ + A + + + P
Sbjct: 22 NVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPL 81
Query: 64 VRERFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 82 AGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 44.3 bits (103), Expect = 1e-06
Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 13/130 (10%)
Query: 4 NPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPT 63
++S + + ++ A+ + + + P
Sbjct: 81 ASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPG 140
Query: 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQR--------TGR 110
+ + Y EL+L+ GD++ V ++D+GW G +
Sbjct: 141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKC 200
Query: 111 TGLFPASFVE 120
G+FP +F E
Sbjct: 201 RGVFPENFTE 210
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 44.4 bits (105), Expect = 2e-06
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Query: 28 TQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVG 87
++ R S S A + P F + + + + L + G
Sbjct: 6 SEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKG 65
Query: 88 DLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+ + V +G + Q G P++++
Sbjct: 66 EKLRVLGYNHNGEWC-EAQTKNGQGWVPSNYI 96
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 40.0 bits (93), Expect = 2e-05
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTL------QRT 108
P+ Y L + G ++YV K R ++ G++
Sbjct: 19 SHPISMAVALQD----YMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLA 74
Query: 109 GRTGLFPASFVE 120
R G FP+S V
Sbjct: 75 ARLGYFPSSIVR 86
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 40.1 bits (93), Expect = 3e-05
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 56 PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
P P + Y P+ + +L G+ + + ++ W+K TG+ G P
Sbjct: 3 SNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIP 61
Query: 116 ASF 118
+F
Sbjct: 62 FNF 64
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 40.4 bits (95), Expect = 4e-05
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
Q + +E +L GD++ + D + + GR G+ PA+
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 118 FVE 120
+V+
Sbjct: 64 YVQ 66
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 40.5 bits (95), Expect = 4e-05
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
+R + Y +L + GD + V ++ W+K T + G P+++V
Sbjct: 5 SGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 61
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 39.7 bits (93), Expect = 6e-05
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
+ + Y ++ EL G +I V K D W+KG + +G+ GLFP+++V+
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKL 56
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 39.9 bits (92), Expect = 7e-05
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 76 PNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFV 119
L GDLI + + GW G +RT + G FP V
Sbjct: 587 GEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCV 635
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 37.8 bits (88), Expect = 3e-04
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 73 PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 10 DYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 33.4 bits (76), Expect = 0.004
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYKGTLQRTGRTGLFPASFVES 121
+ F+ + + ++ L GDL+ V KK+D + + G +SF++
Sbjct: 18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWL--IDNGVTKGFVYSSFLKP 75
Query: 122 F 122
+
Sbjct: 76 Y 76
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.9 bits (77), Expect = 0.005
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 23/75 (30%)
Query: 47 VASDPNNRKPKPQPVPTVRERFRCIVP----YPPNSEYELELRVGDLI-----YVHKKR- 96
+ + + K + P + C P YPP GD++ V +
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTC--PECKVYPPKIVERFS--EGDVVCALCGLVLSDKL 56
Query: 97 -DDG--WYKGTLQRT 108
D W RT
Sbjct: 57 VDTRSEW------RT 65
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR
genomics, PSI-2, protein structure initiative; 1.64A
{Nitrosomonas europaea atcc 19718}
Length = 106
Score = 28.3 bits (63), Expect = 0.32
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 84 LRVGDLIYVHKKRDDGW 100
+R G LI V K W
Sbjct: 84 IRPGALIRVKKTEKGSW 100
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 29.0 bits (64), Expect = 0.35
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
R P+ L GD+ +V G +
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQS 42
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 28.5 bits (63), Expect = 0.57
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 76 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 107
N Y E R LI + K + WYK + R
Sbjct: 314 VNWGYAEETRAWKLIPIKKLPEYNWYKSYMFR 345
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix,
TETR fold, structural genomics, PSI, prote structure
initiative; HET: MSE; 1.52A {Rhodococcus SP}
Length = 214
Score = 27.6 bits (61), Expect = 1.0
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 26 SSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER 67
S+ H+H S+ + V SDP P + R
Sbjct: 2 GSSHHHHHHSSGRENLYFQGHVTSDPGTAAPVKRTAEQSRSL 43
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase
signaling, cancer, transcription; HET: SEP; 1.80A {Homo
sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A
1u7f_A* 1mjs_A 1khu_A 3dit_A
Length = 227
Score = 27.4 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 40 ASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHK 94
+ + SP P N QPV F C + Y YEL RVG+ + +
Sbjct: 5 SPAELSPTTLSPVNHSLDLQPVTYSEPAFWCSIAY-----YELNQRVGETFHASQ 54
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 27.1 bits (59), Expect = 1.4
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 54 RKPKPQPVPTVRERF---RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG- 109
+ VR P + D ++V +K ++ W+ G L + G
Sbjct: 31 KAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGC 90
Query: 110 RTGLFP 115
G P
Sbjct: 91 EIGFIP 96
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural
genomics, structural genomics consortium, SGC,
alternative splicing; 1.77A {Homo sapiens}
Length = 213
Score = 26.5 bits (58), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 81 ELELRVGDLIYVHKKRDDGWYKGTLQR 107
+ +L V I KKR W+KGTL
Sbjct: 6 QGDLIVSMRILG-KKRTKTWHKGTLIA 31
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster,
thermophIle, riken structural genomics/proteomics
initiative, RSGI; 1.50A {Thermus thermophilus} SCOP:
c.18.1.2 PDB: 1ui1_A
Length = 205
Score = 26.1 bits (58), Expect = 2.5
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 6/24 (25%)
Query: 51 PNNRKPKPQPVPTVRERFRCIVPY 74
P NR P P E C +
Sbjct: 87 PQNRAPLPD------EAKICTDKW 104
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 26.3 bits (58), Expect = 3.0
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 69 RCIVPYPPNSEYE-----LELRVGDLIYVHKKRDDGW 100
R + Y PN + L + GD+++V DD W
Sbjct: 9 RALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEW 45
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
[4Fe-4S], snirr, six-electron REDU phosphate complex;
HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
7gep_A* 8gep_A*
Length = 497
Score = 26.1 bits (58), Expect = 3.5
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 66 ERFRCIV------PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
E F+ V + P YE R GD I K DD W+ GR +PA
Sbjct: 244 ETFKAEVERRAGIKFEPIRPYEFTGR-GDRIGWVKGIDDNWHLTLFIENGRILDYPA 299
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 25.9 bits (57), Expect = 3.6
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 69 RCIVPYPPNS-----EYELELRVGDLIYVHKKRDDGW---YK-GTLQRTGRTGLFP 115
R + Y L R GD+++V D+ W + + T G P
Sbjct: 5 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP
domain, catalytic triad (A His272, Glu130), mutant,
I135F, haloalkanes; 0.95A {Rhodococcus SP} PDB: 3fwh_A
3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A
Length = 299
Score = 25.7 bits (57), Expect = 3.9
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 61 VPTVRERFRCIVP-YP-------PNSEYELELRVGDL 89
+P V RCI P P+ +Y + V L
Sbjct: 52 IPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYL 88
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL
binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus
gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Length = 376
Score = 25.5 bits (55), Expect = 5.5
Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 12/84 (14%)
Query: 19 AVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRC-------- 70
A+ + + HR +D A+ ++ PQ +
Sbjct: 262 AIRVLTRVIGHYAHRGQLLVDCGWAA--LSLHGAGAGQGPQGCAAIDGHPELRLVGLTQE 319
Query: 71 --IVPYPPNSEYELELRVGDLIYV 92
++ + VG ++ +
Sbjct: 320 HGLLEHAGGQMDFGRFPVGSVLAL 343
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 25.5 bits (56), Expect = 5.5
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 9/39 (23%)
Query: 61 VPTVRERFRCIVP---------YPPNSEYELELRVGDLI 90
VP + RCI+P N Y L L
Sbjct: 63 VPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 101
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: d.15.1.2
Length = 124
Score = 24.9 bits (54), Expect = 5.5
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 22 SESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRC 70
S SS T NH+ ++D+ P + P + R
Sbjct: 2 SSGSSGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRY 50
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 25.1 bits (54), Expect = 7.6
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 58 PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWY 101
++ R+ P + + + G I + G
Sbjct: 36 SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMV 79
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 24.9 bits (55), Expect = 9.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 4 NPNGKMIHYVPRP 16
P G +IHY P P
Sbjct: 388 GPTGAIIHYAPVP 400
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 24.9 bits (55), Expect = 10.0
Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 6/40 (15%)
Query: 54 RKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVH 93
RK + P Y++++ + +
Sbjct: 303 RKGNAHNT------LEIVRPREKGVRYDVQMHGTSHLVIL 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.395
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,835,026
Number of extensions: 93767
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 225
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)