RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9679
(122 letters)
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 69.8 bits (171), Expect = 5e-18
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ FR + Y E+ + GD I + D+GW GT+QRTGRTG+ PA++VE
Sbjct: 4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 68.8 bits (168), Expect = 2e-17
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 118
P V + + I P P L L GD++ + K W++G T G FP +
Sbjct: 5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 64
Query: 119 VESF 122
V +
Sbjct: 65 VHPY 68
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 66.7 bits (163), Expect = 8e-17
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
P + Y + EL D I + DD W+ G L++ G GLFP+++V
Sbjct: 1 PWATAEY----DYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 66.6 bits (163), Expect = 9e-17
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E + Y S E+ ++ GD++ + + W+K + R G PA++V+
Sbjct: 1 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVK 53
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 66.4 bits (162), Expect = 1e-16
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
PT + + + Y E EL +I +K++ GW++G + FP+++VE
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVE 60
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 66.3 bits (162), Expect = 2e-16
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + Y +LE + GD+I V K ++ W +G G+ G+FP FVE
Sbjct: 6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVE 58
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 66.0 bits (161), Expect = 2e-16
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
F + Y +E +L + G+ + + + W+ TG+TG P+++V
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 65.5 bits (160), Expect = 2e-16
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
R R + + + EL + G+LI V D W++G TGLFP++FV +
Sbjct: 4 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFVTT 56
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 65.1 bits (159), Expect = 3e-16
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
E R + + N E +L + GD++ + K ++ W+ G+ G+ P +VE +
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKY 57
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 65.1 bits (159), Expect = 4e-16
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + P + EL R GD I+V D W+KG G+TG+FP ++V
Sbjct: 5 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVT 54
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 64.0 bits (156), Expect = 9e-16
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
F + Y +E +L G+ + + W++ TG TG P+++V
Sbjct: 3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 64.0 bits (156), Expect = 1e-15
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
R + + E EL R G+++ V + W+ G L + GLFPA++V
Sbjct: 5 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVA 54
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 63.9 bits (156), Expect = 1e-15
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + P EL + GD+I + K D W++G L R G+FP+++V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVC 55
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 62.7 bits (152), Expect = 7e-15
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 55 KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQR-- 107
+ P + + Y EL+L+ GD++ V +D+GW G +
Sbjct: 2 TGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDW 61
Query: 108 ------TGRTGLFPASFVE 120
G+FP +F E
Sbjct: 62 NQHKELEKCRGVFPENFTE 80
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 62.3 bits (151), Expect = 1e-14
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 41 SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
+S + P PV V + Y N+E EL G LI V K D W
Sbjct: 14 ASHVKLLGPSSERATPAFHPVCQVIAMY----DYAANNEDELSFSKGQLINVMNKDDPDW 69
Query: 101 YKGTLQRTGRTGLFPASFVE 120
++G + G TGLFP+++V+
Sbjct: 70 WQGEI--NGVTGLFPSNYVK 87
Score = 28.4 bits (63), Expect = 0.11
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 103 GTLQRTGRTGLFPASFVE 120
G+ +G+ G FPAS V+
Sbjct: 1 GSSGSSGQKGWFPASHVK 18
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 61.0 bits (148), Expect = 2e-14
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+R + Y +L + GD + V ++ + W T + G P+++V
Sbjct: 3 IRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYVA 58
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 60.2 bits (146), Expect = 4e-14
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
++ + Y P + +L+LR GD ++ ++ + W++ + G+ G P+++V
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVT 62
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 59.7 bits (145), Expect = 5e-14
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 73 PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ ++ EL + GD++ V +++ D WYK L G+ G P +++E
Sbjct: 8 DFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIE 54
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 59.4 bits (144), Expect = 7e-14
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E + + PY +L G+ I V +K D W+ G++ R+G+FP+++V+
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVK 60
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 59.5 bits (144), Expect = 1e-13
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + +E EL + GD+IYV + + GW++GTL GRTG FP+++V
Sbjct: 14 KARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVR 63
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA
1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 59.1 bits (143), Expect = 1e-13
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 66 ERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
++ + I P+ N++ L GD++ + + DGW G T G FP+S+ +
Sbjct: 8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 58.3 bits (141), Expect = 2e-13
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
P + Y P+ + +L G+ + + ++ + W TG+ G P +FV
Sbjct: 3 PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWK-AQSLTTGQEGFIPFNFVA 60
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 58.3 bits (141), Expect = 2e-13
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 62 PTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFP 115
P+ E R + + P N E E+ L+ GDL+ + K+D W+K + G G P
Sbjct: 2 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIP 60
Query: 116 ASFVE 120
+++E
Sbjct: 61 YNYIE 65
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 58.6 bits (141), Expect = 3e-13
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGR 110
++R + Y E +++L +GD++ V+K + GW G + TG
Sbjct: 4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63
Query: 111 TGLFPASFVE 120
G FP ++VE
Sbjct: 64 RGDFPGTYVE 73
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 57.2 bits (138), Expect = 6e-13
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
T + + + + EL G + GW +GTL G+TGL P ++VE
Sbjct: 7 GTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVE 64
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 57.1 bits (138), Expect = 7e-13
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E + + ++L L G + +K D W++ + G G P+++V
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVT 56
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 56.9 bits (137), Expect = 1e-12
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASFVE 120
E + Y + +L L G LI + KK GW++G LQ + + G FPAS V+
Sbjct: 8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 56.0 bits (135), Expect = 2e-12
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD--GWYKGTLQRTGRTGLFPASFVE 120
V + + P+ +E EL G+ + V +K ++ W+K R G+ GL P ++V
Sbjct: 5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVV 62
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 55.5 bits (134), Expect = 2e-12
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 68 FRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
F + + + + L + G+ + V W + Q G P++++
Sbjct: 3 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYIT 54
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 55.5 bits (134), Expect = 2e-12
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVE 120
+ + + +L R GD+I + KK D + W+ G + GR G+FPA++VE
Sbjct: 3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVE 56
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 55.3 bits (133), Expect = 3e-12
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + +R I Y S E+ L GD++ V +K + GW+ Q + G PASF+E
Sbjct: 1 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFC--QMKAKRGWIPASFLE 55
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 53
Score = 54.9 bits (132), Expect = 3e-12
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
E + I Y E+ L G+ + V K DGW+ ++ TG FP+ +++
Sbjct: 1 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMYLQ 53
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 54.8 bits (132), Expect = 5e-12
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + + + + L D+I V ++ + W+ G + G G FP S+V+
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVH--GGRGWFPKSYVK 62
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 54.1 bits (130), Expect = 8e-12
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ Y N EL LR + Y+ + W++ + G G P+S++
Sbjct: 2 IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKN-GHEGYAPSSYLV 52
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 54.0 bits (130), Expect = 8e-12
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYVHKKRDD---GWYKGTLQRTGRTGLFPASFVE 120
+ Y P ++ EL ++ GD + + + D+ W+ L + G P + +
Sbjct: 8 YALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLG 60
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 54.1 bits (130), Expect = 1e-11
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 67 RFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ +E +L GD++ V +D WYK + GR G+ PA++V+
Sbjct: 8 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQ 61
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 54.1 bits (130), Expect = 1e-11
Identities = 7/63 (11%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPAS 117
+ + + + + EL + + + + +D W+ + G+ G P++
Sbjct: 10 AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA--EVNGKKGYVPSN 67
Query: 118 FVE 120
++
Sbjct: 68 YIR 70
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 53.5 bits (128), Expect = 5e-11
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 49 SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 108
S P+P E + I Y E+ L G+ + V K DGW+ ++
Sbjct: 1 SPDETEDPEPNYAG---EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKD 55
Query: 109 GRTGLFPASFVE 120
TG FP+ +++
Sbjct: 56 DVTGYFPSMYLQ 67
>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 56
Score = 51.1 bits (122), Expect = 1e-10
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 69 RCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+ + Y + E+ + GD I + + GW K TG TGL P +++
Sbjct: 3 KVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 59
Score = 51.1 bits (122), Expect = 1e-10
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
++ + + + EL + D++ + R W +G +G P + ++
Sbjct: 1 KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVR--NASGDSGFVPNNILD 54
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 50.1 bits (119), Expect = 6e-10
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
+R + P+ + E+ GD+I V +K G G FP ++VE
Sbjct: 6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 49.0 bits (116), Expect = 2e-09
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 41 SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDD 98
SS SS + ++ V R+ PN E EL L G +YV+ D+
Sbjct: 2 SSGSSGTS-----KQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDE 56
Query: 99 GWYKGTLQRTGRTGLFPASFVE 120
+ G+ GL P++FV+
Sbjct: 57 DGFYEGELLDGQRGLVPSNFVD 78
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 46.9 bits (111), Expect = 1e-08
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 54 RKPKPQPVPTVRERFRCIVPYPPN-------SEYELELRVGDLIYVHKKRDDGWYKGTLQ 106
K K +PV R V Y + D ++V +K ++ W+ G L
Sbjct: 13 EKAKTKPV---AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLV 69
Query: 107 RT-GRTGLFPASFV 119
+ G P+
Sbjct: 70 KEGCEIGFIPSPVK 83
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 42.8 bits (100), Expect = 3e-07
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG----TLQRTGRTGLFPASFVES 121
I Y E E+ + G+++ V + G P S +
Sbjct: 8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67
Query: 122 F 122
F
Sbjct: 68 F 68
>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 43.2 bits (101), Expect = 4e-07
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 17/89 (19%)
Query: 41 SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD--- 97
A + +D P + Y L + G ++YV K
Sbjct: 5 KLADRKLCADQECSHPI--------SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRG 56
Query: 98 DGWYKGTLQ------RTGRTGLFPASFVE 120
++ G++Q R G FP+S V
Sbjct: 57 RLFWGGSVQGDYYGDLAARLGYFPSSIVR 85
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 39.3 bits (91), Expect = 9e-06
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 76 PNSEYELELRVGDLIYVHKKRDDGWYKGTL----QRTGRTGLFPASFVE 120
L R GD+++V D+ W++ T G P+
Sbjct: 17 GFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 38.2 bits (88), Expect = 5e-05
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 54 RKPKPQPVPTVRERFRCIVPY-------PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 106
+ K +PV + V Y P + D +++ +K ++ W+ G L
Sbjct: 15 ERAKSKPV---AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLV 71
Query: 107 RT-GRTGLFPASFVE 120
+ G P+
Sbjct: 72 KEGCEIGFIPSPLRL 86
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 36.2 bits (83), Expect = 2e-04
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 55 KPKPQPVPTVRERFRCIVPYPPN-------SEYELELRVGDLIYVHKKRDDGWYKGTLQR 107
+ K +PV R V Y + D +++ +K + W+ G L +
Sbjct: 16 RAKHKPV---AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVK 72
Query: 108 TGRTGLFPASFVE 120
G F S
Sbjct: 73 EGGDIAFIPSPQR 85
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
middle domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 233
Score = 27.9 bits (60), Expect = 0.27
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 61 VPTVRERFRCIVPYPPNSEYELELRV 86
+P RE P+ P +++E +V
Sbjct: 208 IPYKRETIAWGTPHMPGGNFKIEYKV 233
>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma,
unidentified species [TaxId: 2093]}
Length = 197
Score = 26.8 bits (59), Expect = 0.52
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 84 LRVGDLIYVHKKRDDGWYKGTLQRTGR 110
+++ KR DGW +G GR
Sbjct: 84 TETHKILFGEIKRQDGWVEGKDPSAGR 110
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 25.8 bits (56), Expect = 0.93
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 22 SESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRC 70
S SS T NH+ ++D+ P + P + R
Sbjct: 2 SSGSSGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRY 50
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 25.6 bits (56), Expect = 1.1
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 74 YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
Y + +L + VGD++ + WY+ + T G FV+
Sbjct: 16 YENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVD 62
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli
[TaxId: 562]}
Length = 160
Score = 25.6 bits (56), Expect = 1.4
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 22 SESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPV 61
S+ S++ Q + +N +DA A +SD N + P V
Sbjct: 41 SKESTTAQ---KMANLVDAKIADVQSSSDKNAKAQLPDEV 77
>d1e7ua1 a.118.1.6 (A:525-725) Phoshoinositide 3-kinase (PI3K)
helical domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 201
Score = 25.3 bits (55), Expect = 1.8
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 50 DPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR 96
DP + + + +R++ I+ P + E + +L++ R
Sbjct: 13 DPEGDRVRAEMPNQLRKQLEAIIATDPLNPLTAEDK--ELLW--HFR 55
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.0 bits (54), Expect = 1.9
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 6 NGKMIHYVPRPVDAVVSESSSSTQHNH 32
+ + AV + + ++ +H+H
Sbjct: 66 EKNFVVVMVTKPKAVSTPAPATLEHHH 92
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 262
Score = 24.9 bits (54), Expect = 2.8
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 3 VNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPV 61
+ + ++ RP A S + QHN L + ++ P P+ +
Sbjct: 211 LKKDRWQERHILRPYLAFDSILCEALQHN------LPPFTPPPH---TEDSVYPMPRVI 260
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.395
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,927
Number of extensions: 18564
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 57
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)