BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy968
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HKY|A Chain A, Nmr Solution Structure Of Human Rnase 7
Length = 129
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 48 VQELREACDYLLVPFDAHTVRCQNLRGLLHE-LSNEGARCQFEVFLEDLILPLMVNSAQR 106
+Q +AC+ + + HT RC++L LHE S+ A CQ + +
Sbjct: 17 MQPSPQACNSAMKNINKHTKRCKDLNTFLHEPFSSVAATCQTPKI-----------ACKN 65
Query: 107 GDRECH 112
GD+ CH
Sbjct: 66 GDKNCH 71
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 158 ANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGI 217
A+ +E + L V RF YP+T+LG S+ +EF D EY
Sbjct: 5 ADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG---STEKEFFFNEDTKEYFFDRD- 60
Query: 218 PAAVFRAILDYYKGQVIKCP 237
VFR +L++Y+ + P
Sbjct: 61 -PEVFRCVLNFYRTGKLHYP 79
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 158 ANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGI 217
A+ +E + L V RF YP+T+LG S+ +EF D EY
Sbjct: 27 ADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG---STEKEFFFNEDTKEYFFDRD- 82
Query: 218 PAAVFRAILDYYKGQVIKCP 237
VFR +L++Y+ + P
Sbjct: 83 -PEVFRCVLNFYRTGKLHYP 101
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 165 EERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRA 224
+E + L V RF YP+T+LG S+ +EF D EY VFR
Sbjct: 40 DELIVLNVSGRRFQTWRTTLERYPDTLLG---STEKEFFFNEDTKEYFFDRD--PEVFRC 94
Query: 225 ILDYYKGQVIKCP 237
+L++Y+ + P
Sbjct: 95 VLNFYRTGKLHYP 107
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 208 RGEYEVAEGIPAAVFRAILDYYKGQVIKCPP-----------SVSVQELREAC 249
RG++ + EGI + F +L++ G+ ++ P ++ VQ L EAC
Sbjct: 59 RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEAC 111
>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 103
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 166 ERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAI 225
ERV + + RF +PNT+LG R F R EY P+ F AI
Sbjct: 11 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPL--RNEYFFDRNRPS--FDAI 66
Query: 226 LDYYK-GQVIKCPPSVSVQELREACDY 251
L YY+ G ++ P +V + E +
Sbjct: 67 LYYYQSGGRLRRPVNVPLDMFSEEIKF 93
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 168 VTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILD 227
+ L V TRF YP+T+LG SS R+F + + +Y +FR IL+
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLG---SSERDFFYHPETQQYFFDRD--PDIFRHILN 56
Query: 228 YYKGQVIKCPPSVSVQELREACDYL-LVP 255
+Y+ + P + E + L+P
Sbjct: 57 FYRTGKLHYPRHECISAYDEELAFFGLIP 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,705,043
Number of Sequences: 62578
Number of extensions: 293113
Number of successful extensions: 467
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 17
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)