BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy968
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z5Y7|KCD20_HUMAN BTB/POZ domain-containing protein KCTD20 OS=Homo sapiens GN=KCTD20
PE=1 SV=1
Length = 419
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 92/115 (80%)
Query: 24 SFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEG 83
S VFR +LDYYK +I CP +S+ +LR+ CDYL + FD +T+RCQ+L LLHELSN+G
Sbjct: 171 SATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDG 230
Query: 84 ARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPPQMGEEYSQ 138
A QF+ +LE+LILP+MV A++G+RECH+VVL D+D+VDWDE +PP MGEEYSQ
Sbjct: 231 AHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQ 285
Score = 144 bits (363), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Query: 151 NDHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGRE--FTHTNDR 208
N G+N+ + E+VTL+VD TRFV++P +FTA+P+TMLGRMF GRE FT N++
Sbjct: 102 NSSVGFGSNSHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEK 161
Query: 209 GEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNL 266
GEYE+AEGI A VFR +LDYYK +I CP +S+ +LR+ CDYL + FD +T+RCQ+L
Sbjct: 162 GEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDL 219
>sp|Q8CDD8|KCD20_MOUSE BTB/POZ domain-containing protein KCTD20 OS=Mus musculus GN=Kctd20
PE=2 SV=1
Length = 419
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 92/115 (80%)
Query: 24 SFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEG 83
S VFR +LDYYK +I CP +S+ +LR+ CDYL + FD +T+RCQ+L LLHELSN+G
Sbjct: 171 SATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDG 230
Query: 84 ARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPPQMGEEYSQ 138
A QF+ +LE+LILP+MV A++G+RECH+VVL D+D+VDWDE +PP MGEEYSQ
Sbjct: 231 AHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQ 285
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 81/103 (78%), Gaps = 2/103 (1%)
Query: 166 ERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGRE--FTHTNDRGEYEVAEGIPAAVFR 223
E+VTL+VD TRFV++P +FTA+P+TMLGRMF GRE FT N++GEY +AEGI A VFR
Sbjct: 117 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYVIAEGISATVFR 176
Query: 224 AILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNL 266
+LDYYK +I CP +S+ +LR+ CDYL + FD +T+RCQ+L
Sbjct: 177 TVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDL 219
>sp|Q9BSF8|BTBDA_HUMAN BTB/POZ domain-containing protein 10 OS=Homo sapiens GN=BTBD10 PE=1
SV=2
Length = 475
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 93/117 (79%), Gaps = 3/117 (2%)
Query: 152 DHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGRE--FTHTNDRG 209
++ GA I TSE RVTL+VDNTRFV+DP++FTA PNTMLGRMF SGRE FT N++G
Sbjct: 154 ENAKEGARNIRTSE-RVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKG 212
Query: 210 EYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNL 266
EYEVAEGI + VFRAILDYYK +I+CP +S+ ELREACDYL + F+ T++C++L
Sbjct: 213 EYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDL 269
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 27 VFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEGARC 86
VFRAILDYYK +I+CP +S+ ELREACDYL + F+ T++C++L L+HELSN+GAR
Sbjct: 224 VFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARR 283
Query: 87 QFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPPQMGEEYSQ 138
QFE +LE++ILPLMV SAQ G+RECH+VVL DDD VDWDE YPPQMGEEYSQ
Sbjct: 284 QFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQ 335
>sp|Q5R585|BTBDA_PONAB BTB/POZ domain-containing protein 10 OS=Pongo abelii GN=BTBD10 PE=2
SV=1
Length = 475
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 93/117 (79%), Gaps = 3/117 (2%)
Query: 152 DHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGRE--FTHTNDRG 209
++ GA I TSE RVTL+VDNTRFV+DP++FTA PNTMLGRMF SGRE FT N++G
Sbjct: 154 ENAKEGARNIRTSE-RVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKG 212
Query: 210 EYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNL 266
EYEVAEGI + VFRAILDYYK +I+CP +S+ ELREACDYL + F+ T++C++L
Sbjct: 213 EYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDL 269
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 27 VFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEGARC 86
VFRAILDYYK +I+CP +S+ ELREACDYL + F+ T++C++L L+HELSN+GAR
Sbjct: 224 VFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARR 283
Query: 87 QFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPPQMGEEYSQ 138
QFE +LE++ILPLMV SAQ G+RECH+VVL DDD VDWDE YPPQMGEEYSQ
Sbjct: 284 QFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQ 335
>sp|Q80X66|BTBDA_MOUSE BTB/POZ domain-containing protein 10 OS=Mus musculus GN=Btbd10 PE=1
SV=1
Length = 475
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 93/117 (79%), Gaps = 3/117 (2%)
Query: 152 DHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGRE--FTHTNDRG 209
++ GA + TSE RVTL+VDNTRFV+DP++FTA PNTMLGRMF SGRE FT N++G
Sbjct: 154 ENAKEGARNVRTSE-RVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKG 212
Query: 210 EYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNL 266
EYEVAEGI + VFRAILDYYK +I+CP +S+ ELREACDYL + F+ T++C++L
Sbjct: 213 EYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDL 269
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 27 VFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEGARC 86
VFRAILDYYK +I+CP +S+ ELREACDYL + F+ T++C++L L+HELSN+GAR
Sbjct: 224 VFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARR 283
Query: 87 QFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPPQMGEEYSQ 138
QFE +LE++ILPLMV SAQ G+RECH+VVL DDD VDWDE YPPQMGEEYSQ
Sbjct: 284 QFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQ 335
>sp|Q54FP8|PKS32_DICDI Probable polyketide synthase 32 OS=Dictyostelium discoideum
GN=pks32 PE=3 SV=1
Length = 3101
Score = 42.0 bits (97), Expect = 0.005, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 135 EYSQSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGR 194
++ SL+ T +S+++ + G N+I +++ V+ +V F+LDP + ++ T LG
Sbjct: 187 DFRGESLTIDTACSSSSNAINCGYNSIKSNKSNVS-IVGGVNFILDPHISKSF--TQLGL 243
Query: 195 MFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYK-GQVIKCPPSVSVQELREACDYLL 253
+ +GR T ++D Y +EG+ V + + D K I C S + D L
Sbjct: 244 LSPTGRCHTFSSDADGYVRSEGVGIVVLKKLKDAIKDSNNIYCVIKGSNSNIDGNFDKLN 303
Query: 254 VPFDAHTVRCQNLR 267
+ + +C+N++
Sbjct: 304 FYSPSKSSQCENIK 317
>sp|Q54FQ3|PKS29_DICDI Probable polyketide synthase 29 OS=Dictyostelium discoideum
GN=pks29 PE=3 SV=1
Length = 3106
Score = 41.2 bits (95), Expect = 0.008, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 135 EYSQSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGR 194
++ +L+ T +S+++ + G N+I +++ V+ +V F+LDP L ++ T LG
Sbjct: 188 DFRGENLTIDTACSSSSNAINCGYNSIKSNKSNVS-IVGGVNFLLDPHLSKSF--TQLGL 244
Query: 195 MFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYK-GQVIKCPPSVSVQELREACDYLL 253
+ +GR T ++D Y +EG+ V + + D K I C S + D L
Sbjct: 245 LSPTGRCHTFSSDADGYVRSEGVGIVVLKKLKDAIKDSNNIYCVIKGSSSNIDGNFDKLN 304
Query: 254 VPFDAHTVRCQNLR 267
+ + +C+N++
Sbjct: 305 FYSPSKSSQCENIK 318
>sp|Q54FQ2|PKS30_DICDI Probable polyketide synthase 30 OS=Dictyostelium discoideum
GN=pks30 PE=3 SV=1
Length = 3075
Score = 40.4 bits (93), Expect = 0.015, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 135 EYSQSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGR 194
++ +L+ T +S+++ + G N+I +++ V+ +V F+LDP + ++ T LG
Sbjct: 186 DFRGENLTIDTACSSSSNAINCGYNSIKSNKSNVS-IVGGVNFILDPHISKSF--TQLGL 242
Query: 195 MFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYK 230
+ +GR T ++D Y +EG+ V + + D K
Sbjct: 243 LSPTGRCHTFSSDADGYVRSEGVGIVVLKKLKDAIK 278
>sp|Q52PG9|KCND1_BOVIN Potassium voltage-gated channel subfamily D member 1 OS=Bos taurus
GN=KCND1 PE=2 SV=1
Length = 648
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFR 223
+E + + V RF YP+T+LG SS +EF + D GEY +FR
Sbjct: 38 GDEVLVVNVSGRRFETWKNTLDRYPDTLLG---SSEKEFFYNADSGEYFFDRD--PDMFR 92
Query: 224 AILDYYKGQVIKCPPSVSVQEL-REACDYLLVP 255
+L++Y+ + CP +Q E Y LVP
Sbjct: 93 HVLNFYRTGRLHCPRQECIQAFDEELAFYGLVP 125
>sp|Q9NSA2|KCND1_HUMAN Potassium voltage-gated channel subfamily D member 1 OS=Homo
sapiens GN=KCND1 PE=1 SV=2
Length = 647
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFR 223
+E + + V RF YP+T+LG SS +EF + D GEY +FR
Sbjct: 38 GDEVLVVNVSGRRFETWKNTLDRYPDTLLG---SSEKEFFYDADSGEYFFDRD--PDMFR 92
Query: 224 AILDYYKGQVIKCPPSVSVQEL-REACDYLLVP 255
+L++Y+ + CP +Q E Y LVP
Sbjct: 93 HVLNFYRTGRLHCPRQECIQAFDEELAFYGLVP 125
>sp|Q54FN2|PKS34_DICDI Probable polyketide synthase 34 OS=Dictyostelium discoideum
GN=pks34 PE=3 SV=1
Length = 3078
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 135 EYSQSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGR 194
++ +L+ T +S+++ + G N+I +++ V+ +V F+LDP + ++ T L
Sbjct: 188 DFRGENLTIDTACSSSSNAINCGYNSIKSNKSNVS-IVGGVNFILDPHISKSF--TKLDM 244
Query: 195 MFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYK 230
+ +GR T ++D Y +EG+ V + + D K
Sbjct: 245 LSPTGRCHTFSSDADGYVRSEGVGIVVLKKLKDAIK 280
>sp|Q03719|KCND1_MOUSE Potassium voltage-gated channel subfamily D member 1 OS=Mus
musculus GN=Kcnd1 PE=1 SV=1
Length = 651
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFR 223
+E + + V RF YP+T+LG SS +EF + + GEY +FR
Sbjct: 38 GDEVLVVNVSGRRFETWKNTLDRYPDTLLG---SSEKEFFYDAESGEYFFDRD--PDMFR 92
Query: 224 AILDYYKGQVIKCPPSVSVQEL-REACDYLLVP 255
+L++Y+ + CP +Q E Y LVP
Sbjct: 93 HVLNFYRTGRLHCPRQECIQAFDEELAFYGLVP 125
>sp|A5UUJ5|BCHB_ROSS1 Light-independent protochlorophyllide reductase subunit B
OS=Roseiflexus sp. (strain RS-1) GN=bchB PE=3 SV=1
Length = 568
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 110 ECHVVVLLDDDTVDWDEAYPPQMGEEYSQSSLSRPTNKNSTNDHTSSGANTI---PTSEE 166
E H++ + D +D+DE PQ GE +++ R N+ S N H +G + P++
Sbjct: 439 EKHLIDMFGDAGLDYDE---PQTGEPRTENQELRVENRASANGHPEAGVSVGAAEPSAAP 495
Query: 167 RVTLVVDNTRFVLDPALFTAYP 188
++V + + P+ T +P
Sbjct: 496 SRSVVTEESNRATTPSSSTVHP 517
>sp|Q3URF8|KCD21_MOUSE BTB/POZ domain-containing protein KCTD21 OS=Mus musculus GN=Kctd21
PE=2 SV=1
Length = 260
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 168 VTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILD 227
+TL V + A T++P++MLG MF SG+ T + +G + VFR IL+
Sbjct: 5 ITLNVGGKLYTTSLATLTSFPDSMLGAMF-SGKMPTKRDSQGNCFIDRD--GKVFRYILN 61
Query: 228 YYKGQVIKCPPSVSVQEL--REACDYLLVPF 256
+ + + P L REA Y + P
Sbjct: 62 FLRTSHLDLPEDFQEMGLLRREADFYQVQPL 92
>sp|Q4G0X4|KCD21_HUMAN BTB/POZ domain-containing protein KCTD21 OS=Homo sapiens GN=KCTD21
PE=2 SV=1
Length = 260
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 168 VTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILD 227
+TL V + A T++P++MLG MF SG+ T + +G + VFR IL+
Sbjct: 5 ITLNVGGKLYTTSLATLTSFPDSMLGAMF-SGKMPTKRDSQGNCFIDRD--GKVFRYILN 61
Query: 228 YYKGQVIKCPPSVSVQEL--REACDYLLVPF 256
+ + + P L REA Y + P
Sbjct: 62 FLRTSHLDLPEDFQEMGLLRREADFYQVQPL 92
>sp|P17971|KCNAL_DROME Potassium voltage-gated channel protein Shal OS=Drosophila
melanogaster GN=Shal PE=1 SV=2
Length = 571
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 163 TSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
T +E++ + V RF YP+T+LG S+ REF + D EY +F
Sbjct: 38 TDDEKLLINVSGRRFETWRNTLEKYPDTLLG---SNEREFFYDEDCKEYFFDR--DPDIF 92
Query: 223 RAILDYYKGQVIKCP 237
R IL+YY+ + P
Sbjct: 93 RHILNYYRTGKLHYP 107
>sp|Q9H1E1|RNAS7_HUMAN Ribonuclease 7 OS=Homo sapiens GN=RNASE7 PE=1 SV=2
Length = 156
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 48 VQELREACDYLLVPFDAHTVRCQNLRGLLHE-LSNEGARCQFEVFLEDLILPLMVNSAQR 106
+Q +AC+ + + HT RC++L LHE S+ A CQ + +
Sbjct: 44 MQPSPQACNSAMKNINKHTKRCKDLNTFLHEPFSSVAATCQTPKI-----------ACKN 92
Query: 107 GDRECH 112
GD+ CH
Sbjct: 93 GDKNCH 98
>sp|Q8SPZ5|RNAS8_AOTTR Ribonuclease 8 OS=Aotus trivirgatus GN=RNASE8 PE=3 SV=1
Length = 155
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 48 VQELREACDYLLVPFDAHTVRCQNLRGLLHE-LSNEGARCQ 87
VQ +ACD + + HT RC++L LH+ S+ A CQ
Sbjct: 44 VQPSPQACDSAMRDINKHTKRCKDLNTFLHKPFSSVAATCQ 84
>sp|P0A150|YGIDB_PSEPU Uncharacterized protein in gidB 3'region OS=Pseudomonas putida PE=4
SV=1
Length = 263
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 31 ILDYYKGQVIKCPPSVSVQELRE--ACDYLLVPFDAHTVRCQNLRGLLHELSNEGARCQF 88
I D Y +I CPPS+S+ L A D +++P + L L+ + AR
Sbjct: 115 IRDNYDYILIDCPPSLSMLTLNALVASDGVIIPMQCEYYALEGLSDLVDNIKRIAARLNP 174
Query: 89 EVFLEDLI 96
E+ +E L+
Sbjct: 175 ELKIEGLL 182
>sp|P0A149|Y002_PSEPK Uncharacterized protein PP_0002 OS=Pseudomonas putida (strain
KT2440) GN=PP_0002 PE=4 SV=1
Length = 263
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 31 ILDYYKGQVIKCPPSVSVQELRE--ACDYLLVPFDAHTVRCQNLRGLLHELSNEGARCQF 88
I D Y +I CPPS+S+ L A D +++P + L L+ + AR
Sbjct: 115 IRDNYDYILIDCPPSLSMLTLNALVASDGVIIPMQCEYYALEGLSDLVDNIKRIAARLNP 174
Query: 89 EVFLEDLI 96
E+ +E L+
Sbjct: 175 ELKIEGLL 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,487,098
Number of Sequences: 539616
Number of extensions: 4196612
Number of successful extensions: 9493
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 9473
Number of HSP's gapped (non-prelim): 43
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)