Query psy968
Match_columns 272
No_of_seqs 158 out of 483
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 16:50:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3840|consensus 100.0 2.8E-74 6.1E-79 539.0 6.8 156 21-176 145-316 (438)
2 KOG3713|consensus 99.9 4.6E-26 1E-30 222.9 8.2 101 163-265 28-135 (477)
3 KOG4390|consensus 99.9 2.4E-26 5.2E-31 222.1 2.5 97 164-265 38-134 (632)
4 PF02214 BTB_2: BTB/POZ domain 99.9 2.2E-25 4.8E-30 171.8 3.6 92 168-261 1-93 (94)
5 KOG3840|consensus 99.8 4.6E-21 9.9E-26 181.1 7.1 117 153-269 83-199 (438)
6 KOG1545|consensus 99.7 2.1E-19 4.6E-24 172.7 1.8 94 162-259 57-151 (507)
7 KOG1665|consensus 99.7 1.7E-17 3.7E-22 151.8 6.6 89 164-254 7-96 (302)
8 KOG2723|consensus 99.7 3.7E-17 7.9E-22 147.8 5.9 90 164-256 7-97 (221)
9 KOG2714|consensus 99.7 1.8E-16 3.8E-21 154.4 7.7 96 160-258 5-101 (465)
10 KOG2715|consensus 99.6 6.6E-16 1.4E-20 136.1 5.4 88 165-255 20-108 (210)
11 KOG2716|consensus 99.6 2.6E-15 5.7E-20 136.5 5.9 88 164-255 3-91 (230)
12 smart00225 BTB Broad-Complex, 98.7 3E-08 6.5E-13 71.1 5.0 82 168-256 2-84 (90)
13 PHA03098 kelch-like protein; P 97.4 0.00024 5.1E-09 69.5 5.4 91 164-265 10-100 (534)
14 PHA02790 Kelch-like protein; P 97.3 0.00015 3.3E-09 71.1 3.3 92 169-267 25-117 (480)
15 PF00651 BTB: BTB/POZ domain; 96.9 0.0022 4.8E-08 49.0 5.6 86 166-256 11-98 (111)
16 PHA02713 hypothetical protein; 96.7 0.0016 3.5E-08 65.5 4.6 93 167-267 27-120 (557)
17 PF02214 BTB_2: BTB/POZ domain 96.7 0.0014 3E-08 50.4 2.7 38 24-61 49-87 (94)
18 KOG4441|consensus 96.3 0.0047 1E-07 62.8 5.0 92 166-264 37-128 (571)
19 smart00225 BTB Broad-Complex, 93.8 0.041 8.8E-07 39.0 1.9 40 21-61 44-83 (90)
20 KOG3713|consensus 93.4 0.062 1.3E-06 54.3 3.1 48 22-69 86-133 (477)
21 PHA02713 hypothetical protein; 83.7 1.1 2.5E-05 45.3 3.7 40 19-61 70-109 (557)
22 KOG1665|consensus 82.7 0.93 2E-05 42.8 2.4 92 22-129 58-151 (302)
23 KOG4390|consensus 77.6 1.4 3E-05 44.6 2.0 28 22-49 85-112 (632)
24 PHA02790 Kelch-like protein; P 73.1 2.3 5E-05 42.1 2.2 40 21-61 67-106 (480)
25 cd03111 CpaE_like This protein 71.9 3.3 7.2E-05 32.6 2.4 45 39-83 47-93 (106)
26 PHA03098 kelch-like protein; P 69.0 3 6.5E-05 41.0 2.0 41 20-62 52-92 (534)
27 cd02042 ParA ParA and ParB of 68.8 3.5 7.6E-05 31.4 1.9 44 35-78 40-85 (104)
28 PHA02518 ParA-like protein; Pr 67.8 6.4 0.00014 33.3 3.5 52 28-79 70-123 (211)
29 PF01656 CbiA: CobQ/CobB/MinD/ 66.9 4.4 9.5E-05 33.6 2.3 61 23-83 78-145 (195)
30 PHA02519 plasmid partition pro 62.6 7.1 0.00015 38.2 3.1 53 27-79 227-281 (387)
31 cd02038 FleN-like FleN is a me 60.8 7.8 0.00017 31.7 2.6 47 35-81 45-93 (139)
32 PF08784 RPA_C: Replication pr 59.6 11 0.00023 29.6 3.1 49 25-84 46-94 (102)
33 TIGR01968 minD_bact septum sit 58.3 13 0.00029 32.3 3.8 52 27-78 104-157 (261)
34 PRK13705 plasmid-partitioning 53.7 11 0.00023 36.8 2.7 46 31-76 231-278 (388)
35 PF09035 Tn916-Xis: Excisionas 52.4 4.9 0.00011 30.7 0.1 38 51-95 16-64 (67)
36 KOG0783|consensus 48.7 12 0.00026 41.3 2.3 69 167-237 560-637 (1267)
37 PF00651 BTB: BTB/POZ domain; 48.4 16 0.00035 27.6 2.4 44 18-61 54-97 (111)
38 cd02037 MRP-like MRP (Multiple 48.1 20 0.00043 29.9 3.1 57 26-82 54-119 (169)
39 PRK13869 plasmid-partitioning 46.3 17 0.00037 35.6 2.8 47 31-77 248-296 (405)
40 TIGR03079 CH4_NH3mon_ox_B meth 45.7 16 0.00036 36.5 2.6 76 105-195 299-376 (399)
41 TIGR03815 CpaE_hom_Actino heli 45.5 23 0.00049 33.0 3.4 58 23-80 189-252 (322)
42 TIGR03453 partition_RepA plasm 44.4 23 0.00049 34.1 3.3 39 30-68 230-270 (387)
43 cd03110 Fer4_NifH_child This p 43.7 22 0.00048 29.6 2.8 44 33-76 91-136 (179)
44 TIGR03018 pepcterm_TyrKin exop 42.7 30 0.00065 30.1 3.5 54 27-80 139-197 (207)
45 PLN03219 uncharacterized prote 42.3 56 0.0012 27.4 4.8 60 164-228 40-104 (108)
46 KOG4350|consensus 40.3 18 0.00039 37.1 2.0 69 165-238 44-112 (620)
47 PRK10818 cell division inhibit 40.1 36 0.00079 30.4 3.7 54 27-80 105-161 (270)
48 PF12926 MOZART2: Mitotic-spin 38.8 16 0.00034 29.6 1.1 17 216-232 40-56 (88)
49 CHL00175 minD septum-site dete 37.7 37 0.00079 30.7 3.4 58 24-81 111-175 (281)
50 cd01816 Raf_RBD Ubiquitin doma 37.1 21 0.00047 28.0 1.5 27 111-137 40-70 (74)
51 KOG0459|consensus 36.7 13 0.00028 38.0 0.3 53 97-151 183-259 (501)
52 cd02036 MinD Bacterial cell di 34.8 38 0.00081 27.6 2.8 41 36-76 64-106 (179)
53 cd02035 ArsA ArsA ATPase funct 33.2 41 0.00089 29.6 2.9 57 28-84 102-170 (217)
54 TIGR02047 CadR-PbrR Cd(II)/Pb( 30.0 1.7E+02 0.0036 24.1 5.9 58 14-78 3-86 (127)
55 PF04855 SNF5: SNF5 / SMARCB1 29.3 72 0.0016 29.7 3.9 83 56-138 26-149 (244)
56 PF02519 Auxin_inducible: Auxi 27.3 1.1E+02 0.0024 24.7 4.3 59 165-229 38-99 (100)
57 PF02338 OTU: OTU-like cystein 27.1 98 0.0021 24.1 3.8 30 27-59 7-38 (121)
58 KOG2851|consensus 26.2 76 0.0017 31.9 3.7 41 58-98 339-405 (412)
59 PF10802 DUF2540: Protein of u 25.8 39 0.00085 26.7 1.3 20 65-84 6-25 (75)
60 PF13443 HTH_26: Cro/C1-type H 25.8 34 0.00074 23.9 0.9 43 13-62 12-54 (63)
61 cd05025 S-100A1 S-100A1: S-100 25.6 77 0.0017 24.1 2.9 56 46-103 28-85 (92)
62 PRK13849 putative crown gall t 24.8 52 0.0011 29.7 2.1 45 24-68 68-119 (231)
63 KOG2714|consensus 24.4 54 0.0012 33.6 2.3 41 24-64 61-102 (465)
64 PF00772 DnaB: DnaB-like helic 24.4 1.4E+02 0.003 22.6 4.1 14 25-38 41-54 (103)
65 cd02040 NifH NifH gene encodes 24.0 30 0.00065 30.6 0.4 45 33-77 115-164 (270)
66 smart00512 Skp1 Found in Skp1 23.9 1.7E+02 0.0036 22.9 4.6 55 171-231 8-63 (104)
67 PRK13752 putative transcriptio 23.7 2.1E+02 0.0046 24.3 5.5 56 13-78 9-91 (144)
68 TIGR03371 cellulose_yhjQ cellu 23.4 62 0.0013 28.1 2.2 34 34-67 114-149 (246)
69 TIGR03029 EpsG chain length de 23.0 71 0.0015 28.7 2.6 57 28-84 206-265 (274)
70 PF04794 YdjC: YdjC-like prote 22.8 65 0.0014 29.3 2.3 28 14-41 3-30 (261)
71 TIGR01969 minD_arch cell divis 21.9 1.2E+02 0.0027 26.2 3.8 42 27-68 101-144 (251)
72 PRK13230 nitrogenase reductase 21.6 38 0.00083 30.7 0.6 46 34-79 116-166 (279)
73 COG5196 ERD2 ER lumen protein 21.0 74 0.0016 29.2 2.3 26 86-111 121-147 (214)
74 cd05026 S-100Z S-100Z: S-100Z 20.7 87 0.0019 24.3 2.4 57 46-103 29-86 (93)
75 COG1192 Soj ATPases involved i 20.6 91 0.002 27.7 2.8 40 34-73 119-160 (259)
76 PF03201 HMD: H2-forming N5,N1 20.4 53 0.0011 27.2 1.1 21 23-43 14-36 (98)
No 1
>KOG3840|consensus
Probab=100.00 E-value=2.8e-74 Score=538.97 Aligned_cols=156 Identities=58% Similarity=0.966 Sum_probs=149.3
Q ss_pred cCchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhccccccCCCCcccccchHHHHHHhhchhhHHHHHHHHHHHhHHHH
Q psy968 21 FCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEGARCQFEVFLEDLILPLM 100 (272)
Q Consensus 21 ~~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~f~~~tv~c~~l~~llhelsn~ga~~~f~~fl~~~i~p~m 100 (272)
.||+++||||||||||+|+|+||++|||+||||||||||||||++|||||||++|||||||+|||+||+.|||++|||+|
T Consensus 145 dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILPLM 224 (438)
T KOG3840|consen 145 DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILPLM 224 (438)
T ss_pred cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCceeEEEEecCCCccccCCCCCCCCcccccccccCcccC--------CCCCC--------CCCCCCCCCCCCC
Q psy968 101 VNSAQRGDRECHVVVLLDDDTVDWDEAYPPQMGEEYSQSSLSRPTN--------KNSTN--------DHTSSGANTIPTS 164 (272)
Q Consensus 101 v~~a~~g~rechivvl~~~d~v~wd~~~pp~mgEe~~qivySt~ln--------k~~~k--------~~~~~G~~~~p~~ 164 (272)
|.+||+||||||||||+|||+|||||+|||||||||+|+||||+|| ++.+| +||+.|++++|+-
T Consensus 225 VASAQ~GeRECHiVVLldDDvVdWDEEyPPQMGEEY~Q~vyST~lyRFFKYIENRDVAKqVlKeRGLKKIRlGIEGYPTh 304 (438)
T KOG3840|consen 225 VASAQHGERECHLVVLLDDDVVDWDEEYPPQMGEEYTQVVYSTHLYRFFKYIENRDVAKQVLKERGLKKIRLGIEGYPTH 304 (438)
T ss_pred HHhhhcCCceeEEEEEecCccccccccCCcccchhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHhChhhEeeccccCcch
Confidence 9999999999999999999999999999999999999999999999 22222 2999999999999
Q ss_pred CCcEEEeeCCeE
Q psy968 165 EERVTLVVDNTR 176 (272)
Q Consensus 165 ~~rV~LNVGG~r 176 (272)
.++|.-.-||+-
T Consensus 305 KEKikkRPGGRa 316 (438)
T KOG3840|consen 305 KEKIKKRPGGRA 316 (438)
T ss_pred HHHhhcCCCCCc
Confidence 999999999974
No 2
>KOG3713|consensus
Probab=99.93 E-value=4.6e-26 Score=222.89 Aligned_cols=101 Identities=23% Similarity=0.321 Sum_probs=93.9
Q ss_pred CCCCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCc-----cc--CCCCCCcEEeccCCCccchHHHHhhHhCCeee
Q psy968 163 TSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGRE-----FT--HTNDRGEYEVAEGIPAAVFRAILDYYKGQVIK 235 (272)
Q Consensus 163 ~~~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~-----~~--~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh 235 (272)
+.+.+|+|||||.||++.++||.++|.|+||++..+..+ .| ||+.++|||||| ||.+|.+|||||||||||
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR--~P~~F~~Vl~fYrtGkLH 105 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDR--HPGAFAYVLNFYRTGKLH 105 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeecc--ChHHHHHHHHHHhcCeec
Confidence 456799999999999999999999999999999875521 23 899999999999 999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCCCCCccccccc
Q psy968 236 CPPSVSVQELREACDYLLVPFDAHTVRCQN 265 (272)
Q Consensus 236 ~P~~vc~~~f~eE~~Ff~Ip~~~~~~cC~~ 265 (272)
+|.++|+..|.||++||||+....+.||+.
T Consensus 106 ~p~~vC~~~F~eEL~yWgI~~~~le~CC~~ 135 (477)
T KOG3713|consen 106 VPADVCPLSFEEELDYWGIDEAHLESCCWM 135 (477)
T ss_pred cccccchHHHHHHHHHhCCChhhhhHHhHH
Confidence 999999999999999999999999999975
No 3
>KOG4390|consensus
Probab=99.92 E-value=2.4e-26 Score=222.14 Aligned_cols=97 Identities=25% Similarity=0.431 Sum_probs=92.7
Q ss_pred CCCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCCHH
Q psy968 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQ 243 (272)
Q Consensus 164 ~~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc~~ 243 (272)
.++.++|||+|+||+||+.||.+||||+||+ +.++++|++++||||||| ||++||+||||||||+||+|...|+.
T Consensus 38 ~De~lvlNvSGrRFeTWknTLeryPdTLLGS---sEkeFFy~~dt~eYFFDR--DPdiFRhvLnFYRTGkLHyPR~ECi~ 112 (632)
T KOG4390|consen 38 QDELLVLNVSGRRFETWKNTLERYPDTLLGS---SEKEFFYDEDTGEYFFDR--DPDIFRHVLNFYRTGKLHYPRHECIS 112 (632)
T ss_pred cCcEEEEeccccchhHHHhHHHhCchhhhCC---cchheeecCCcccccccC--ChHHHHHHHHHhhcCcccCchHHHHH
Confidence 5789999999999999999999999999996 667788999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccccccc
Q psy968 244 ELREACDYLLVPFDAHTVRCQN 265 (272)
Q Consensus 244 ~f~eE~~Ff~Ip~~~~~~cC~~ 265 (272)
.+-||+.||||-++....||..
T Consensus 113 AyDeELaF~Gl~PeligDCCyE 134 (632)
T KOG4390|consen 113 AYDEELAFYGLVPELIGDCCYE 134 (632)
T ss_pred HhhhhhhHhcccHHHHhhhhhH
Confidence 9999999999999999999964
No 4
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.91 E-value=2.2e-25 Score=171.78 Aligned_cols=92 Identities=27% Similarity=0.428 Sum_probs=76.8
Q ss_pred EEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhC-CeeecCCCCCHHHHH
Q psy968 168 VTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKG-QVIKCPPSVSVQELR 246 (272)
Q Consensus 168 V~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRT-GkLh~P~~vc~~~f~ 246 (272)
|+|||||++|+|+++||.++|+|+|++|++.+....+++++|+||||| ||.+|++||+|||+ |+|+.|.+.+...|.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDR--dp~~F~~IL~ylr~~~~l~~~~~~~~~~l~ 78 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDR--DPELFEYILNYLRTGGKLPIPDEICLEELL 78 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS---HHHHHHHHHHHHHTSSB---TTS-HHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEecc--ChhhhhHHHHHHhhcCccCCCCchhHHHHH
Confidence 789999999999999999999999999998652224678899999999 99999999999999 899999899999999
Q ss_pred HHHHhcCCCCCCccc
Q psy968 247 EACDYLLVPFDAHTV 261 (272)
Q Consensus 247 eE~~Ff~Ip~~~~~~ 261 (272)
+||+||+|+....+.
T Consensus 79 ~Ea~fy~l~~l~i~~ 93 (94)
T PF02214_consen 79 EEAEFYGLDELFIED 93 (94)
T ss_dssp HHHHHHT-HHHHBHH
T ss_pred HHHHHcCCCccccCC
Confidence 999999997654443
No 5
>KOG3840|consensus
Probab=99.83 E-value=4.6e-21 Score=181.08 Aligned_cols=117 Identities=53% Similarity=0.934 Sum_probs=109.4
Q ss_pred CCCCCCCCCCCCCCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCC
Q psy968 153 HTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQ 232 (272)
Q Consensus 153 ~~~~G~~~~p~~~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTG 232 (272)
..+.|+-..|+..+++++-|+|.+|.+.+..|+.+|+||||+||+.+..+...+++|||-+..||...+||+||+||+||
T Consensus 83 ~~~s~~G~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG 162 (438)
T KOG3840|consen 83 MLMSQLGCSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSG 162 (438)
T ss_pred hhhhhcCCCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcC
Confidence 34445556788899999999999999999999999999999999998877788999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCCCCCCccccccccccc
Q psy968 233 VIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRRK 269 (272)
Q Consensus 233 kLh~P~~vc~~~f~eE~~Ff~Ip~~~~~~cC~~l~~~ 269 (272)
.++||+++++.+++|+++|..|||++.|++||||++-
T Consensus 163 ~iRCP~~vSvpELrEACDYLlipF~a~TvkCqnL~aL 199 (438)
T KOG3840|consen 163 TMRCPSSVSVSELREACDYLLVPFNAQTVKCQNLHAL 199 (438)
T ss_pred ceeCCCCCchHHHHhhcceEEeecccceeeehhHHHH
Confidence 9999999999999999999999999999999999863
No 6
>KOG1545|consensus
Probab=99.75 E-value=2.1e-19 Score=172.71 Aligned_cols=94 Identities=26% Similarity=0.348 Sum_probs=83.9
Q ss_pred CCCCCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhC-CeeecCCCC
Q psy968 162 PTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKG-QVIKCPPSV 240 (272)
Q Consensus 162 p~~~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRT-GkLh~P~~v 240 (272)
+..+++|+|||+|.||+|..+||.+||+|+||.--. +..++|+.++|||||| +...|.+||.||++ |+|+.|.++
T Consensus 57 ~~~~ervvINisGlRFeTql~TL~qfP~TLLGDp~k--R~rfFdplrNEyFFDR--nRpSFdaILYyYQSGGRlrRPvnV 132 (507)
T KOG1545|consen 57 SCCCERVVINISGLRFETQLKTLAQFPNTLLGDPAK--RMRFFDPLRNEYFFDR--NRPSFDAILYYYQSGGRLRRPVNV 132 (507)
T ss_pred cccccEEEEEeccceehHHHHHHhhCchhhcCCHHH--hcccccccchhhcccC--CCCccceEEEEeecCceecCCccc
Confidence 345699999999999999999999999999998422 2346899999999999 99999999999998 799999999
Q ss_pred CHHHHHHHHHhcCCCCCCc
Q psy968 241 SVQELREACDYLLVPFDAH 259 (272)
Q Consensus 241 c~~~f~eE~~Ff~Ip~~~~ 259 (272)
+.+.|.+|+.|||+..+.+
T Consensus 133 PlDiF~eEirFyqlG~eam 151 (507)
T KOG1545|consen 133 PLDIFLEEIRFYQLGDEAM 151 (507)
T ss_pred cHHHHHHHHHHHHhhHHHH
Confidence 9999999999999965543
No 7
>KOG1665|consensus
Probab=99.70 E-value=1.7e-17 Score=151.80 Aligned_cols=89 Identities=18% Similarity=0.352 Sum_probs=83.5
Q ss_pred CCCcEEEeeCCeEEEechHhhh-cCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCCH
Q psy968 164 SEERVTLVVDNTRFVLDPALFT-AYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSV 242 (272)
Q Consensus 164 ~~~rV~LNVGG~rF~t~~sTL~-r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc~ 242 (272)
.+..|.|||||+.|.|+.+||. |.|||||++||+.+-..+..+.+|-|+||| ||..|+.||||+|.|++.+-.++..
T Consensus 7 ~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR--sp~yFepIlNyLr~Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 7 LSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR--SPKYFEPILNYLRDGQIPSLSDIDC 84 (302)
T ss_pred hhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc--CchhhHHHHHHHhcCceeecCCccH
Confidence 4578999999999999999995 999999999999875567889999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q psy968 243 QELREACDYLLV 254 (272)
Q Consensus 243 ~~f~eE~~Ff~I 254 (272)
..+++|++||+|
T Consensus 85 lgvLeeArff~i 96 (302)
T KOG1665|consen 85 LGVLEEARFFQI 96 (302)
T ss_pred HHHHHHhhHHhh
Confidence 999999999998
No 8
>KOG2723|consensus
Probab=99.68 E-value=3.7e-17 Score=147.85 Aligned_cols=90 Identities=23% Similarity=0.451 Sum_probs=82.2
Q ss_pred CCCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCC-H
Q psy968 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVS-V 242 (272)
Q Consensus 164 ~~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc-~ 242 (272)
.++.|.|||||+.|+|...||.++|+|+|++||+.... ..++..|.||||| |+.+|||||+|+||-++.+|+... .
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~-~~~d~~g~~fIDR--DG~lFRyvL~~LRt~~l~lpe~f~e~ 83 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELP-LLRDSKGRYFIDR--DGFLFRYVLDYLRTKALLLPEDFAEV 83 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCC-ccccccccEEEcC--CcchHHHHHHHhcccccccchhhhhH
Confidence 56899999999999999999999999999999997433 4578999999999 999999999999998899999887 7
Q ss_pred HHHHHHHHhcCCCC
Q psy968 243 QELREACDYLLVPF 256 (272)
Q Consensus 243 ~~f~eE~~Ff~Ip~ 256 (272)
..+.+|++||+++.
T Consensus 84 ~~L~rEA~f~~l~~ 97 (221)
T KOG2723|consen 84 ERLVREAEFFQLEA 97 (221)
T ss_pred HHHHHHHHHHcccc
Confidence 88999999999973
No 9
>KOG2714|consensus
Probab=99.65 E-value=1.8e-16 Score=154.36 Aligned_cols=96 Identities=15% Similarity=0.210 Sum_probs=85.1
Q ss_pred CCCCCCCcEEEeeCCeEEEechHhhhcCC-CcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCC
Q psy968 160 TIPTSEERVTLVVDNTRFVLDPALFTAYP-NTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPP 238 (272)
Q Consensus 160 ~~p~~~~rV~LNVGG~rF~t~~sTL~r~P-dT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~ 238 (272)
..+.+.++|+|||||++|+|++.||+--| ||+|+++++.++... .++.|--|||| ||++|.-||||+|||.|-.+.
T Consensus 5 ~~~~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~-~~~~~~iFIDR--DPdlFaviLn~LRTg~L~~~g 81 (465)
T KOG2714|consen 5 AMGSSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSL-KDESGAIFIDR--DPDLFAVILNLLRTGDLDASG 81 (465)
T ss_pred ccCCCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccc-cCCCCceEecC--CchHHHHHHHHHhcCCCCCcc
Confidence 34456799999999999999999999999 999999999876643 48889999999 999999999999999999988
Q ss_pred CCCHHHHHHHHHhcCCCCCC
Q psy968 239 SVSVQELREACDYLLVPFDA 258 (272)
Q Consensus 239 ~vc~~~f~eE~~Ff~Ip~~~ 258 (272)
......+.+|+.||||..-.
T Consensus 82 ~~~~~llhdEA~fYGl~~ll 101 (465)
T KOG2714|consen 82 VFPERLLHDEAMFYGLTPLL 101 (465)
T ss_pred CchhhhhhhhhhhcCcHHHH
Confidence 77788899999999995543
No 10
>KOG2715|consensus
Probab=99.60 E-value=6.6e-16 Score=136.14 Aligned_cols=88 Identities=18% Similarity=0.337 Sum_probs=81.2
Q ss_pred CCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcc-cCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCCHH
Q psy968 165 EERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREF-THTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQ 243 (272)
Q Consensus 165 ~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~-~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc~~ 243 (272)
+.+|.|||||+.|.|++.||.+.|.+.|.++.+..+.+ +..|++|.|+||| ||..|..||||+|.|||.+.+ +..+
T Consensus 20 s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~-l~ee 96 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNK-LSEE 96 (210)
T ss_pred eEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhh-hhhh
Confidence 68999999999999999999999999999998766543 3568999999999 999999999999999999988 8888
Q ss_pred HHHHHHHhcCCC
Q psy968 244 ELREACDYLLVP 255 (272)
Q Consensus 244 ~f~eE~~Ff~Ip 255 (272)
..++|++||.+|
T Consensus 97 GvL~EAefyn~~ 108 (210)
T KOG2715|consen 97 GVLEEAEFYNDP 108 (210)
T ss_pred ccchhhhccCCh
Confidence 999999999998
No 11
>KOG2716|consensus
Probab=99.57 E-value=2.6e-15 Score=136.53 Aligned_cols=88 Identities=19% Similarity=0.350 Sum_probs=78.9
Q ss_pred CCCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCC-H
Q psy968 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVS-V 242 (272)
Q Consensus 164 ~~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc-~ 242 (272)
..+.|.|||||+.|.|+++||+++ |++|..|++.+.. ...+++|-.|||| +|.+|.-||||+|.|...+|+..- .
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk~-dg~fk~m~e~~i~-~~~d~s~~IFIDR--SpKHF~~ILNfmRdGdv~LPe~~kel 78 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTKF-DGFFKTMLETDIP-VEKDESGCIFIDR--SPKHFDTILNFMRDGDVDLPESEKEL 78 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhhh-hhHHHHHhhcCCc-cccCCcCcEEecC--ChhHHHHHHHhhhcccccCccchHHH
Confidence 347899999999999999999996 8899999998865 3457899999999 999999999999999999999764 6
Q ss_pred HHHHHHHHhcCCC
Q psy968 243 QELREACDYLLVP 255 (272)
Q Consensus 243 ~~f~eE~~Ff~Ip 255 (272)
.+++.||.||+++
T Consensus 79 ~El~~EA~fYlL~ 91 (230)
T KOG2716|consen 79 KELLREAEFYLLD 91 (230)
T ss_pred HHHHHHHHHhhHH
Confidence 7899999999885
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.68 E-value=3e-08 Score=71.08 Aligned_cols=82 Identities=29% Similarity=0.438 Sum_probs=67.2
Q ss_pred EEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEe-ccCCCccchHHHHhhHhCCeeecCCCCCHHHHH
Q psy968 168 VTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEV-AEGIPAAVFRAILDYYKGQVIKCPPSVSVQELR 246 (272)
Q Consensus 168 V~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFF-DR~idp~vFr~ILnYYRTGkLh~P~~vc~~~f~ 246 (272)
|+|+|||+.|.+.+.+|...+. ++.+|+.++... ....++.+ |. ++.+|+.+|+|+++|++..+.. ....+.
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~-~f~~~~~~~~~~---~~~~~i~l~~~--~~~~f~~~l~~ly~~~~~~~~~-~~~~l~ 74 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSP-YFKALFSGDFKE---SKKSEIYLDDV--SPEDFRALLEFLYTGKLDLPEE-NVEELL 74 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCH-HHHHHHcCCCcc---CCCCEEEecCC--CHHHHHHHHHeecCceeecCHH-HHHHHH
Confidence 6799999999999999999965 888888765432 13344544 55 9999999999999999988886 678899
Q ss_pred HHHHhcCCCC
Q psy968 247 EACDYLLVPF 256 (272)
Q Consensus 247 eE~~Ff~Ip~ 256 (272)
++++||+++.
T Consensus 75 ~~a~~~~~~~ 84 (90)
T smart00225 75 ELADYLQIPG 84 (90)
T ss_pred HHHHHHCcHH
Confidence 9999999864
No 13
>PHA03098 kelch-like protein; Provisional
Probab=97.38 E-value=0.00024 Score=69.46 Aligned_cols=91 Identities=13% Similarity=0.295 Sum_probs=72.7
Q ss_pred CCCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCCHH
Q psy968 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQ 243 (272)
Q Consensus 164 ~~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc~~ 243 (272)
.+-.|+++|+|+.|...+..|...++ ++.+||++++. +.+.-+.- ++.+|+.||+|..||++.+..+ .+.
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~-yF~~mf~~~~~------~~~i~l~~--~~~~~~~~l~y~Ytg~~~i~~~-~~~ 79 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSE-YFKKMFKNNFK------ENEINLNI--DYDSFNEVIKYIYTGKINITSN-NVK 79 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhH-HHHHHHhCCCC------CceEEecC--CHHHHHHHHHHhcCCceEEcHH-HHH
Confidence 45667777899999999999999876 89999987654 34455543 8999999999999999988774 488
Q ss_pred HHHHHHHhcCCCCCCccccccc
Q psy968 244 ELREACDYLLVPFDAHTVRCQN 265 (272)
Q Consensus 244 ~f~eE~~Ff~Ip~~~~~~cC~~ 265 (272)
++++.+++|||+. ....||.-
T Consensus 80 ~ll~~A~~l~~~~-l~~~C~~~ 100 (534)
T PHA03098 80 DILSIANYLIIDF-LINLCINY 100 (534)
T ss_pred HHHHHHHHhCcHH-HHHHHHHH
Confidence 9999999999975 33444443
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=97.31 E-value=0.00015 Score=71.10 Aligned_cols=92 Identities=7% Similarity=-0.029 Sum_probs=72.6
Q ss_pred EEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEe-ccCCCccchHHHHhhHhCCeeecCCCCCHHHHHH
Q psy968 169 TLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEV-AEGIPAAVFRAILDYYKGQVIKCPPSVSVQELRE 247 (272)
Q Consensus 169 ~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFF-DR~idp~vFr~ILnYYRTGkLh~P~~vc~~~f~e 247 (272)
+|-|.|..|...+..|....+ ++.+||++++.+.. .+-.+ ..||++.+++.||+|..||+|.+.. ..++.+++
T Consensus 25 ~~~~~~~~~~~HR~VLAa~S~-YFraMF~~~~~Es~----~~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~ 98 (480)
T PHA02790 25 IIEAIGGNIIVNSTILKKLSP-YFRTHLRQKYTKNK----DPVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLR 98 (480)
T ss_pred EEEEcCcEEeeehhhhhhcCH-HHHHHhcCCccccc----cceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHHHH
Confidence 455677899999999999876 99999998865332 23332 2488999999999999999999987 57999999
Q ss_pred HHHhcCCCCCCccccccccc
Q psy968 248 ACDYLLVPFDAHTVRCQNLR 267 (272)
Q Consensus 248 E~~Ff~Ip~~~~~~cC~~l~ 267 (272)
.+.++||+ .....||+=|.
T Consensus 99 aA~~Lqi~-~v~~~C~~fL~ 117 (480)
T PHA02790 99 ASILTSVE-FIIYTCINFIL 117 (480)
T ss_pred HHHHhChH-HHHHHHHHHHH
Confidence 99999997 34555655443
No 15
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=96.92 E-value=0.0022 Score=49.01 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=64.3
Q ss_pred CcEEEeeC-CeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEec-cCCCccchHHHHhhHhCCeeecCCCCCHH
Q psy968 166 ERVTLVVD-NTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVA-EGIPAAVFRAILDYYKGQVIKCPPSVSVQ 243 (272)
Q Consensus 166 ~rV~LNVG-G~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFD-R~idp~vFr~ILnYYRTGkLh~P~~vc~~ 243 (272)
--++|.|+ |.+|.+.+..|..... ++.+|+.+. +..+++.--+. .++++..|+.+|+|..+|.+..+......
T Consensus 11 ~D~~i~v~d~~~~~vhk~iL~~~S~-~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ 85 (111)
T PF00651_consen 11 SDVTIRVGDGKTFYVHKNILAARSP-YFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVE 85 (111)
T ss_dssp --EEEEETTTEEEEE-HHHHHHHBH-HHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHH
T ss_pred CCEEEEECCCEEEeechhhhhccch-hhhhccccc----ccccccccccccccccccccccccccccCCcccCCHHHHHH
Confidence 45889999 9999999999988754 999998865 11222222332 45799999999999999999887335588
Q ss_pred HHHHHHHhcCCCC
Q psy968 244 ELREACDYLLVPF 256 (272)
Q Consensus 244 ~f~eE~~Ff~Ip~ 256 (272)
.+.+-+++|+++.
T Consensus 86 ~ll~lA~~~~~~~ 98 (111)
T PF00651_consen 86 ELLELADKLQIPE 98 (111)
T ss_dssp HHHHHHHHTTBHH
T ss_pred HHHHHHHHhCcHH
Confidence 8999999999864
No 16
>PHA02713 hypothetical protein; Provisional
Probab=96.74 E-value=0.0016 Score=65.50 Aligned_cols=93 Identities=13% Similarity=0.209 Sum_probs=71.3
Q ss_pred cEEEeeC-CeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCCHHHH
Q psy968 167 RVTLVVD-NTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQEL 245 (272)
Q Consensus 167 rV~LNVG-G~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc~~~f 245 (272)
-|+|.|+ |+.|...+..|....+ ++.+||++++... ...++--+ .||++.+|+.||+|..||++ ++ ..++.+
T Consensus 27 DV~L~v~~~~~f~~Hr~vLaa~S~-YF~amF~~~~~e~--~~~~~v~l-~~v~~~~~~~ll~y~Yt~~i--~~-~nv~~l 99 (557)
T PHA02713 27 DVIITIGDGEEIKAHKTILAAGSK-YFRTLFTTPMIIR--DLVTRVNL-QMFDKDAVKNIVQYLYNRHI--SS-MNVIDV 99 (557)
T ss_pred CEEEEeCCCCEEeehHHHHhhcCH-HHHHHhcCCchhh--ccCceEEe-ccCCHHHHHHHHHHhcCCCC--CH-HHHHHH
Confidence 5778898 9999999999998876 9999999875421 12334444 67999999999999999985 32 458899
Q ss_pred HHHHHhcCCCCCCccccccccc
Q psy968 246 REACDYLLVPFDAHTVRCQNLR 267 (272)
Q Consensus 246 ~eE~~Ff~Ip~~~~~~cC~~l~ 267 (272)
++.++++||+. ..+.||+-|.
T Consensus 100 l~aA~~lqi~~-l~~~C~~~l~ 120 (557)
T PHA02713 100 LKCADYLLIDD-LVTDCESYIK 120 (557)
T ss_pred HHHHHHHCHHH-HHHHHHHHHH
Confidence 99999999864 3445555443
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.66 E-value=0.0014 Score=50.41 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhc-CcccCCCCCchHHHHHhhcccccc
Q psy968 24 SFKVFRAILDYYKG-QVIKCPPSVSVQELREACDYLLVP 61 (272)
Q Consensus 24 s~~~f~~ildyy~~-g~~~cp~~~sv~elreacdy~~i~ 61 (272)
++..|+.||+||++ |.+..|+.+.+.+|.+.++|+-|+
T Consensus 49 dp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~ 87 (94)
T PF02214_consen 49 DPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLD 87 (94)
T ss_dssp -HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-H
T ss_pred ChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCC
Confidence 78999999999999 899999999999999999998764
No 18
>KOG4441|consensus
Probab=96.35 E-value=0.0047 Score=62.78 Aligned_cols=92 Identities=26% Similarity=0.350 Sum_probs=73.6
Q ss_pred CcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCCCCCHHHH
Q psy968 166 ERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPPSVSVQEL 245 (272)
Q Consensus 166 ~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~~vc~~~f 245 (272)
=-|+|-|+++.|...+-.|..... ++.+||.+++... +.....-.||||..++.+++|..||++.+.. ..++++
T Consensus 37 cDv~L~v~~~~~~aHR~VLAa~S~-YFraMFt~~l~e~----~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~l 110 (571)
T KOG4441|consen 37 CDVTLLVGDREFPAHRVVLAACSP-YFRAMFTSGLKES----KQKEINLEGVDPETLELLLDYAYTGKLEISE-DNVQEL 110 (571)
T ss_pred ceEEEEECCeeechHHHHHHhccH-HHHHHhcCCcccc----cceEEEEecCCHHHHHHHHHHhhcceEEech-HhHHHH
Confidence 358999999999999999998876 9999999875432 2223444559999999999999999998876 679999
Q ss_pred HHHHHhcCCCCCCcccccc
Q psy968 246 REACDYLLVPFDAHTVRCQ 264 (272)
Q Consensus 246 ~eE~~Ff~Ip~~~~~~cC~ 264 (272)
++.+.++||+.- .+.||.
T Consensus 111 l~aA~~lQi~~v-~~~C~~ 128 (571)
T KOG4441|consen 111 LEAASLLQIPEV-VDACCE 128 (571)
T ss_pred HHHHHHhhhHHH-HHHHHH
Confidence 999999998642 334443
No 19
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=93.80 E-value=0.041 Score=39.03 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=36.4
Q ss_pred cCchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhcccccc
Q psy968 21 FCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVP 61 (272)
Q Consensus 21 ~~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~ 61 (272)
.++++.+|+.+|+|..+|.+.-|++ .+.++-++|+|+.++
T Consensus 44 ~~~~~~~f~~~l~~ly~~~~~~~~~-~~~~l~~~a~~~~~~ 83 (90)
T smart00225 44 DDVSPEDFRALLEFLYTGKLDLPEE-NVEELLELADYLQIP 83 (90)
T ss_pred cCCCHHHHHHHHHeecCceeecCHH-HHHHHHHHHHHHCcH
Confidence 4699999999999999999998888 899999999998774
No 20
>KOG3713|consensus
Probab=93.43 E-value=0.062 Score=54.31 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhccccccCCCCcccc
Q psy968 22 CKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRC 69 (272)
Q Consensus 22 ~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~f~~~tv~c 69 (272)
-=++.+|..||+||+||.++||..+=.....|=-||.=|+=++-.==|
T Consensus 86 DR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 86 DRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEAHLESCC 133 (477)
T ss_pred ccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChhhhhHHh
Confidence 347899999999999999999999999999999999998755433334
No 21
>PHA02713 hypothetical protein; Provisional
Probab=83.71 E-value=1.1 Score=45.30 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=34.7
Q ss_pred cccCchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhcccccc
Q psy968 19 QLFCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVP 61 (272)
Q Consensus 19 ~~~~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~ 61 (272)
+..||++.+|+.||||-=||.|. .-.|++|-+|+|||.||
T Consensus 70 ~l~~v~~~~~~~ll~y~Yt~~i~---~~nv~~ll~aA~~lqi~ 109 (557)
T PHA02713 70 NLQMFDKDAVKNIVQYLYNRHIS---SMNVIDVLKCADYLLID 109 (557)
T ss_pred EeccCCHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHCHH
Confidence 46799999999999998889863 45799999999999886
No 22
>KOG1665|consensus
Probab=82.67 E-value=0.93 Score=42.85 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=58.0
Q ss_pred CchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhccccccCCCCcccccchHHHHHHhhchhhHHHHHHHHHHHhHH--H
Q psy968 22 CKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEGARCQFEVFLEDLILP--L 99 (272)
Q Consensus 22 ~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~f~~~tv~c~~l~~llhelsn~ga~~~f~~fl~~~i~p--~ 99 (272)
.-|+.-|+-||.|-+.|.|.|-.++++.++-|++|||-|= .|..=|.+ ||.--.+- +.=|| -
T Consensus 58 DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~---------sL~~hle~-~~~e~pe~------~~pltR~d 121 (302)
T KOG1665|consen 58 DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQIL---------SLKDHLED-SRKEVPEV------EAPLTRID 121 (302)
T ss_pred ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhH---------hHHhHHhh-hccCCCcC------CCCccHHH
Confidence 3478889999999999999999999999999999998762 23333333 32211000 00000 1
Q ss_pred HhhccccCCceeEEEEecCCCccccCCCCC
Q psy968 100 MVNSAQRGDRECHVVVLLDDDTVDWDEAYP 129 (272)
Q Consensus 100 mv~~a~~g~rechivvl~~~d~v~wd~~~p 129 (272)
.|+|.|.-+-.|.=|-|.--|--.-|=.+.
T Consensus 122 iik~iqT~elRfqGvNlSGaDLskLDlr~i 151 (302)
T KOG1665|consen 122 IIKCIQTEELRFQGVNLSGADLSKLDLRLI 151 (302)
T ss_pred HHHHhhhhheeeecccccccchhhcccccc
Confidence 234555566677777777666544444443
No 23
>KOG4390|consensus
Probab=77.57 E-value=1.4 Score=44.59 Aligned_cols=28 Identities=18% Similarity=0.509 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHhhcCcccCCCCCchH
Q psy968 22 CKSFKVFRAILDYYKGQVIKCPPSVSVQ 49 (272)
Q Consensus 22 ~~s~~~f~~ildyy~~g~~~cp~~~sv~ 49 (272)
.-.+++||.||.||+||.++||-..-++
T Consensus 85 DRDPdiFRhvLnFYRTGkLHyPR~ECi~ 112 (632)
T KOG4390|consen 85 DRDPDIFRHVLNFYRTGKLHYPRHECIS 112 (632)
T ss_pred cCChHHHHHHHHHhhcCcccCchHHHHH
Confidence 3468899999999999999999765444
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=73.09 E-value=2.3 Score=42.08 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=36.3
Q ss_pred cCchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhcccccc
Q psy968 21 FCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVP 61 (272)
Q Consensus 21 ~~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~ 61 (272)
.||++.++++||||-=||.|.=-+. .|++|-+|++||.||
T Consensus 67 ~~v~~~~l~~lldy~YTg~l~it~~-nV~~ll~aA~~Lqi~ 106 (480)
T PHA02790 67 LDLDIHSLTSIVIYSYTGKVYIDSH-NVVNLLRASILTSVE 106 (480)
T ss_pred cCcCHHHHHHHHHhheeeeEEEecc-cHHHHHHHHHHhChH
Confidence 3899999999999999999998765 699999999999886
No 25
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=71.94 E-value=3.3 Score=32.61 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=37.2
Q ss_pred cccCCCCCchH--HHHHhhccccccCCCCcccccchHHHHHHhhchh
Q psy968 39 VIKCPPSVSVQ--ELREACDYLLVPFDAHTVRCQNLRGLLHELSNEG 83 (272)
Q Consensus 39 ~~~cp~~~sv~--elreacdy~~i~f~~~tv~c~~l~~llhelsn~g 83 (272)
+|-|||+.+.. .+-++||+.++|.+.+.....++..++..|...+
T Consensus 47 IiDtpp~~~~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 47 VVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred EEeCCCCcCHHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 67899999853 5568999999999999999988888887766544
No 26
>PHA03098 kelch-like protein; Provisional
Probab=69.02 E-value=3 Score=41.04 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=34.7
Q ss_pred ccCchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhccccccC
Q psy968 20 LFCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPF 62 (272)
Q Consensus 20 ~~~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~f 62 (272)
..+ ++.+|++||+|--+|.+.-.+. .|.||-+|+|+|.||-
T Consensus 52 l~~-~~~~~~~~l~y~Ytg~~~i~~~-~~~~ll~~A~~l~~~~ 92 (534)
T PHA03098 52 LNI-DYDSFNEVIKYIYTGKINITSN-NVKDILSIANYLIIDF 92 (534)
T ss_pred ecC-CHHHHHHHHHHhcCCceEEcHH-HHHHHHHHHHHhCcHH
Confidence 345 9999999999999999977654 4999999999998864
No 27
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=68.76 E-value=3.5 Score=31.37 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=36.2
Q ss_pred hhcCcccCCCCCch--HHHHHhhccccccCCCCcccccchHHHHHH
Q psy968 35 YKGQVIKCPPSVSV--QELREACDYLLVPFDAHTVRCQNLRGLLHE 78 (272)
Q Consensus 35 y~~g~~~cp~~~sv--~elreacdy~~i~f~~~tv~c~~l~~llhe 78 (272)
|..=+|-|||+.+- ..+-++||++++|.+.+....+.+..++..
T Consensus 40 ~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~~ 85 (104)
T cd02042 40 YDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLLET 85 (104)
T ss_pred CCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHHHHHHHHHHHHH
Confidence 55558999999874 456789999999999999888888887765
No 28
>PHA02518 ParA-like protein; Provisional
Probab=67.75 E-value=6.4 Score=33.27 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCcccCCCCCch--HHHHHhhccccccCCCCcccccchHHHHHHh
Q psy968 28 FRAILDYYKGQVIKCPPSVSV--QELREACDYLLVPFDAHTVRCQNLRGLLHEL 79 (272)
Q Consensus 28 f~~ildyy~~g~~~cp~~~sv--~elreacdy~~i~f~~~tv~c~~l~~llhel 79 (272)
...+.+.|..=+|-|||+.+- .+.-.++|+.+||...+...+..+..++..+
T Consensus 70 l~~~~~~~d~viiD~p~~~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~ 123 (211)
T PHA02518 70 LPKVASGYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELI 123 (211)
T ss_pred HHHHhccCCEEEEeCCCCccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHH
Confidence 344567889999999999653 3455789999999999988887776665443
No 29
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=66.92 E-value=4.4 Score=33.55 Aligned_cols=61 Identities=26% Similarity=0.453 Sum_probs=48.0
Q ss_pred chHHHHHHHHHH-----hhcCcccCCCCCchH--HHHHhhccccccCCCCcccccchHHHHHHhhchh
Q psy968 23 KSFKVFRAILDY-----YKGQVIKCPPSVSVQ--ELREACDYLLVPFDAHTVRCQNLRGLLHELSNEG 83 (272)
Q Consensus 23 ~s~~~f~~ildy-----y~~g~~~cp~~~sv~--elreacdy~~i~f~~~tv~c~~l~~llhelsn~g 83 (272)
.....++.+++- |..=+|-|||+.+.. ..-.++|++++|.+.+.....++..++..|.+.+
T Consensus 78 ~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~ 145 (195)
T PF01656_consen 78 LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLG 145 (195)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhhccccceeecccccccHHHHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhc
Confidence 344566666655 778899999999654 5678999999999999988888887777776655
No 30
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=62.64 E-value=7.1 Score=38.18 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCcccCCCCCchHHH--HHhhccccccCCCCcccccchHHHHHHh
Q psy968 27 VFRAILDYYKGQVIKCPPSVSVQEL--REACDYLLVPFDAHTVRCQNLRGLLHEL 79 (272)
Q Consensus 27 ~f~~ildyy~~g~~~cp~~~sv~el--reacdy~~i~f~~~tv~c~~l~~llhel 79 (272)
....+-+-|..=+|-|||+.+.--+ --|+|+++||...+...-..+..++..+
T Consensus 227 ~L~~l~~~YD~IlID~pPslg~lt~nAL~AAd~vliPv~~~~~s~~s~~~~~~~i 281 (387)
T PHA02519 227 AIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYVSVLQFFTML 281 (387)
T ss_pred HHHHhhccCCEEEEECCCCccHHHHHHHHHhCEEEEecCCcHHHHHHHHHHHHHH
Confidence 3344556788889999999887544 4688999999988766555444444433
No 31
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=60.82 E-value=7.8 Score=31.74 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=37.9
Q ss_pred hhcCcccCCCCCchH--HHHHhhccccccCCCCcccccchHHHHHHhhc
Q psy968 35 YKGQVIKCPPSVSVQ--ELREACDYLLVPFDAHTVRCQNLRGLLHELSN 81 (272)
Q Consensus 35 y~~g~~~cp~~~sv~--elreacdy~~i~f~~~tv~c~~l~~llhelsn 81 (272)
|..=+|-|||+++-. ++-..||+++||.+.+....+++..++.++++
T Consensus 45 yd~VIiD~p~~~~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~ 93 (139)
T cd02038 45 YDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAK 93 (139)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHH
Confidence 677788899987644 44578999999999999888888888777654
No 32
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=59.59 E-value=11 Score=29.56 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcCcccCCCCCchHHHHHhhccccccCCCCcccccchHHHHHHhhchhh
Q psy968 25 FKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEGA 84 (272)
Q Consensus 25 ~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~f~~~tv~c~~l~~llhelsn~ga 84 (272)
..+-+.||+|.|. --.=+.||+|.|+.+-. -+...+++.-|-+|+++|-
T Consensus 46 ~~~~~~Vl~~i~~-~~~~~~Gv~v~~I~~~l----------~~~~~~v~~al~~L~~eG~ 94 (102)
T PF08784_consen 46 SPLQDKVLNFIKQ-QPNSEEGVHVDEIAQQL----------GMSENEVRKALDFLSNEGH 94 (102)
T ss_dssp -HHHHHHHHHHHC-----TTTEEHHHHHHHS----------TS-HHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHh-cCCCCCcccHHHHHHHh----------CcCHHHHHHHHHHHHhCCe
Confidence 4567899999999 44446899999998876 2245688999999999984
No 33
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=58.28 E-value=13 Score=32.34 Aligned_cols=52 Identities=10% Similarity=0.235 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCcccCCCCCch--HHHHHhhccccccCCCCcccccchHHHHHH
Q psy968 27 VFRAILDYYKGQVIKCPPSVSV--QELREACDYLLVPFDAHTVRCQNLRGLLHE 78 (272)
Q Consensus 27 ~f~~ildyy~~g~~~cp~~~sv--~elreacdy~~i~f~~~tv~c~~l~~llhe 78 (272)
.++.+.+-|..=+|-|||+.+. ...-.++|+.+||...+.....++..++..
T Consensus 104 ~l~~l~~~~D~viiD~p~~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~ 157 (261)
T TIGR01968 104 LVNELKEEFDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVRDADRVIGL 157 (261)
T ss_pred HHHHHHHhCCEEEEeCCCCcCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH
Confidence 3445556788889999999864 344568999999999987666666555433
No 34
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=53.71 E-value=11 Score=36.83 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=32.6
Q ss_pred HHHHhhcCcccCCCCCchHHH--HHhhccccccCCCCcccccchHHHH
Q psy968 31 ILDYYKGQVIKCPPSVSVQEL--REACDYLLVPFDAHTVRCQNLRGLL 76 (272)
Q Consensus 31 ildyy~~g~~~cp~~~sv~el--reacdy~~i~f~~~tv~c~~l~~ll 76 (272)
+-+-|..=+|-|||+.+.--+ --|+|+++||...+...-..+..++
T Consensus 231 l~~~YD~IiIDtpP~l~~~t~nal~AaD~viiP~~~~~~s~~g~~~~~ 278 (388)
T PRK13705 231 VAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFF 278 (388)
T ss_pred hhccCCEEEEECCCchhHHHHHHHHHcCEEEEecCCcHHHHHHHHHHH
Confidence 334577789999999876433 4599999999988765554444443
No 35
>PF09035 Tn916-Xis: Excisionase from transposon Tn916; InterPro: IPR015122 The phage-encoded excisionase protein Tn916-Xis adopts a winged-helix structure that consists of a three-stranded anti-parallel beta-sheet that packs against a helix-turn-helix (HTH) motif and a third C-terminal alpha-helix. It is encoded for by Tn916, which also codes for the integrase Tn916-Int. The protein interacts with DNA by the insertion of helix alpha-2 into the major groove and the contact of the hairpin that connects strands beta-2 and beta-3 with the adjacent phosphodiester backbone and/or minor groove. Tn916-Xis stimulates phage excision and inhibits viral integration by stabilising distorted DNA structures []. ; PDB: 1Y6U_A.
Probab=52.42 E-value=4.9 Score=30.72 Aligned_cols=38 Identities=29% Similarity=0.491 Sum_probs=26.0
Q ss_pred HHHhhccccccCCCCcccccchHHHHHHhhchh-----------hHHHHHHHHHHH
Q psy968 51 LREACDYLLVPFDAHTVRCQNLRGLLHELSNEG-----------ARCQFEVFLEDL 95 (272)
Q Consensus 51 lreacdy~~i~f~~~tv~c~~l~~llhelsn~g-----------a~~~f~~fl~~~ 95 (272)
+.||+.|+=| -.+.||.|+||-.|-+ .|++||+||++.
T Consensus 16 i~EAa~Y~gI-------G~~klr~l~~~~~~~~f~~~~G~r~lIkR~~fe~yL~~~ 64 (67)
T PF09035_consen 16 IEEAAEYFGI-------GEKKLRELAEENPDCPFVLWIGNRRLIKRKKFEKYLDKI 64 (67)
T ss_dssp HHHHHHHT-S--------HHHHHHHHHH-TT-SSEEEETTEEEEESHHHHHTSTT-
T ss_pred HHHHHHHhCc-------cHHHHHHHHHhCCCCCEEEEECCEEEEeHHHHHHHHHHh
Confidence 5689998865 4678888887755544 379999999864
No 36
>KOG0783|consensus
Probab=48.69 E-value=12 Score=41.28 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=51.8
Q ss_pred cEEEeeCCeEEEechHhhhcCCCcchhhcccCCCc-----ccCC----CCCCcEEeccCCCccchHHHHhhHhCCeeecC
Q psy968 167 RVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGRE-----FTHT----NDRGEYEVAEGIPAAVFRAILDYYKGQVIKCP 237 (272)
Q Consensus 167 rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~-----~~~d----d~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P 237 (272)
-|++-|||..|...+-.|..+.+ .|.+++-+... ..|. ......||+. |+|.+|++||+|..|..+--|
T Consensus 560 DVtf~vg~~~F~aHKfIl~~rs~-flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~-i~p~mfe~lL~~iYtdt~~~P 637 (1267)
T KOG0783|consen 560 DVTFYVGTSMFHAHKFILCARSS-FLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVED-IPPLMFEILLHYIYTDTLLSP 637 (1267)
T ss_pred eEEEEecCeecccceEEEEeccH-HHHHHHHhhccccccceeeeecccccCceeeecc-CCHHHHHHHHHHHhcccccCC
Confidence 49999999999999999988765 78888765422 1231 2234456776 899999999999998766555
No 37
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=48.35 E-value=16 Score=27.56 Aligned_cols=44 Identities=32% Similarity=0.319 Sum_probs=34.6
Q ss_pred ccccCchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhcccccc
Q psy968 18 GQLFCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVP 61 (272)
Q Consensus 18 ~~~~~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~ 61 (272)
-+..++++..|+++|+|--+|.+.=+.--.+.++-+++|+|-+|
T Consensus 54 i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~ 97 (111)
T PF00651_consen 54 ISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIP 97 (111)
T ss_dssp EEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBH
T ss_pred cccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcH
Confidence 34678999999999999887765443466688899999998876
No 38
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=48.05 E-value=20 Score=29.87 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHHHH-----HHhhcCcccCCCCCchHHHH----HhhccccccCCCCcccccchHHHHHHhhch
Q psy968 26 KVFRAIL-----DYYKGQVIKCPPSVSVQELR----EACDYLLVPFDAHTVRCQNLRGLLHELSNE 82 (272)
Q Consensus 26 ~~f~~il-----dyy~~g~~~cp~~~sv~elr----eacdy~~i~f~~~tv~c~~l~~llhelsn~ 82 (272)
..++.++ +-|..=+|-|||+++-.-+. .++|++++|.......-.++..++..|.+.
T Consensus 54 ~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~ 119 (169)
T cd02037 54 GAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKV 119 (169)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhc
Confidence 4455554 46888999999998643222 479999999999988888888777777654
No 39
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=46.26 E-value=17 Score=35.63 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=35.4
Q ss_pred HHHHhhcCcccCCCCCchHHH--HHhhccccccCCCCcccccchHHHHH
Q psy968 31 ILDYYKGQVIKCPPSVSVQEL--REACDYLLVPFDAHTVRCQNLRGLLH 77 (272)
Q Consensus 31 ildyy~~g~~~cp~~~sv~el--reacdy~~i~f~~~tv~c~~l~~llh 77 (272)
+.|-|..=+|-|||+.+.-=+ --|+|+++||...+...-..+..++.
T Consensus 248 ~~~~yD~IiIDtpP~l~~~t~~al~aAd~viiPv~p~~~~~~~~~~~l~ 296 (405)
T PRK13869 248 VADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLL 296 (405)
T ss_pred hhccCCEEEEECCCchhHHHHHHHHHcCEEEEecCCcHHHHHHHHHHHH
Confidence 445578889999999876433 46899999999988776666655554
No 40
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=45.71 E-value=16 Score=36.47 Aligned_cols=76 Identities=12% Similarity=0.222 Sum_probs=52.5
Q ss_pred ccCCceeEEEEecCC-CccccCCCCCCCCcccccccccCcccCCCCCCCCCCCCCCCCCCCCCcEEEeeCCeEEEech-H
Q psy968 105 QRGDRECHVVVLLDD-DTVDWDEAYPPQMGEEYSQSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTRFVLDP-A 182 (272)
Q Consensus 105 ~~g~rechivvl~~~-d~v~wd~~~pp~mgEe~~qivySt~lnk~~~k~~~~~G~~~~p~~~~rV~LNVGG~rF~t~~-s 182 (272)
+.||=.--=|..++- |+-.|+.+||...--+.-.+ ++.+ .=.|++-..|++-+.+.+.++.+ +
T Consensus 299 rlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v-------~d~~--------pI~PGETr~v~v~aqdA~WEveRL~ 363 (399)
T TIGR03079 299 SIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEV-------DDQS--------AIAPGETVEVKMEAKDALWEVQRLM 363 (399)
T ss_pred EEEeEeecceEeeCcccccccCCCChHHHhhcccee-------CCCC--------CcCCCcceEEEEEEehhhhHHHHHH
Confidence 344444445677777 88999999997443221101 1111 12255778999999999999998 5
Q ss_pred hhhcCCCcchhhc
Q psy968 183 LFTAYPNTMLGRM 195 (272)
Q Consensus 183 TL~r~PdT~Lg~M 195 (272)
+|...|||++|.+
T Consensus 364 ~L~~DpdSrfgGL 376 (399)
T TIGR03079 364 ALLGDPESRFGGL 376 (399)
T ss_pred HHhcCcccccceE
Confidence 9999999999976
No 41
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=45.52 E-value=23 Score=32.97 Aligned_cols=58 Identities=22% Similarity=0.177 Sum_probs=44.0
Q ss_pred chHHHHHHHHH----HhhcCcccCCCCCchH--HHHHhhccccccCCCCcccccchHHHHHHhh
Q psy968 23 KSFKVFRAILD----YYKGQVIKCPPSVSVQ--ELREACDYLLVPFDAHTVRCQNLRGLLHELS 80 (272)
Q Consensus 23 ~s~~~f~~ild----yy~~g~~~cp~~~sv~--elreacdy~~i~f~~~tv~c~~l~~llhels 80 (272)
+++..++.+|+ .|..=+|-|||+.+.. .+-++||+.+||.+.+.-.+.+...++.+|.
T Consensus 189 ~~~~~l~~~l~~l~~~~D~VIID~p~~~~~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~ 252 (322)
T TIGR03815 189 LPPAAVRAVLDAARRGGDLVVVDLPRRLTPAAETALESADLVLVVVPADVRAVAAAARVCPELG 252 (322)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHh
Confidence 66666666654 5666789999998753 5568999999999988777777777776554
No 42
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=44.43 E-value=23 Score=34.12 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=30.6
Q ss_pred HHHHHhhcCcccCCCCCchHHHH--HhhccccccCCCCccc
Q psy968 30 AILDYYKGQVIKCPPSVSVQELR--EACDYLLVPFDAHTVR 68 (272)
Q Consensus 30 ~ildyy~~g~~~cp~~~sv~elr--eacdy~~i~f~~~tv~ 68 (272)
.+.+-|..=+|-|||+.+..-+. .|||+++||...+...
T Consensus 230 ~l~~~yD~IiiD~pp~~~~~~~~al~aad~viipv~p~~~d 270 (387)
T TIGR03453 230 EVEDDYDVVVIDCPPQLGFLTLSALCAATGVLITVHPQMLD 270 (387)
T ss_pred HHHhcCCEEEEeCCccHhHHHHHHHHHcCeeEEcCCCchhh
Confidence 34467888899999999875443 5999999999887654
No 43
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=43.69 E-value=22 Score=29.62 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=33.0
Q ss_pred HHhhcCcccCCCCCchHHHH--HhhccccccCCCCcccccchHHHH
Q psy968 33 DYYKGQVIKCPPSVSVQELR--EACDYLLVPFDAHTVRCQNLRGLL 76 (272)
Q Consensus 33 dyy~~g~~~cp~~~sv~elr--eacdy~~i~f~~~tv~c~~l~~ll 76 (272)
+-|..=+|-|||+.+-.-+. .++|..+||...+.....++..++
T Consensus 91 ~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~ 136 (179)
T cd03110 91 EGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAV 136 (179)
T ss_pred cCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHHHH
Confidence 55777789999998764444 679999999999877555554444
No 44
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=42.71 E-value=30 Score=30.07 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=41.4
Q ss_pred HHHHHHHHh--hcCcccCCCCCchHH---HHHhhccccccCCCCcccccchHHHHHHhh
Q psy968 27 VFRAILDYY--KGQVIKCPPSVSVQE---LREACDYLLVPFDAHTVRCQNLRGLLHELS 80 (272)
Q Consensus 27 ~f~~ildyy--~~g~~~cp~~~sv~e---lreacdy~~i~f~~~tv~c~~l~~llhels 80 (272)
.+..+.+.| ..=+|-|||+.+..+ |-.+||+.+|+...+...-.++...+.-|-
T Consensus 139 ~l~~l~~~y~~D~IiiD~pp~~~~~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~ 197 (207)
T TIGR03018 139 LLHELARRYPDRIIIIDTPPLLVFSEARALARLVGQIVLVVEEGRTTQEAVKEALSALE 197 (207)
T ss_pred HHHHHHhhCCCCEEEEECCCCcchhHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc
Confidence 444455566 566899999997544 456899999999999888888888877665
No 45
>PLN03219 uncharacterized protein; Provisional
Probab=42.35 E-value=56 Score=27.41 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=39.1
Q ss_pred CCCcEEEeeCC----eEEEechHhhhcCCCcchhhcccCCCccc-CCCCCCcEEeccCCCccchHHHHhh
Q psy968 164 SEERVTLVVDN----TRFVLDPALFTAYPNTMLGRMFSSGREFT-HTNDRGEYEVAEGIPAAVFRAILDY 228 (272)
Q Consensus 164 ~~~rV~LNVGG----~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~-~dd~~gEYFFDR~idp~vFr~ILnY 228 (272)
...-+.+-||. +||.+..+-| ++| .+..|+....+.+ |+...|---|-- +...|+.||..
T Consensus 40 pkGh~aVYVG~~~E~kRFvVPi~yL-~hP--~F~~LL~~AeEEfGf~~~~G~L~IPC--d~~~F~~ll~~ 104 (108)
T PLN03219 40 PKGHVAVYVGEQMEKKRFVVPISYL-NHP--LFREFLNRAEEECGFHHSMGGLTIPC--REESFLHLITS 104 (108)
T ss_pred CCCeEEEEECCCCCceEEEEEHHHc-CCh--HHHHHHHHHHHHhCCCCCCCCEEEeC--CHHHHHHHHHh
Confidence 35677778885 8999987766 566 5666665433333 433346666666 77778877765
No 46
>KOG4350|consensus
Probab=40.33 E-value=18 Score=37.09 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=49.1
Q ss_pred CCcEEEeeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCCCcEEeccCCCccchHHHHhhHhCCeeecCC
Q psy968 165 EERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKCPP 238 (272)
Q Consensus 165 ~~rV~LNVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~gEYFFDR~idp~vFr~ILnYYRTGkLh~P~ 238 (272)
-.-|++.|..+||...+-.|..-. +++.+|.-.++....+ +.--.-+- +..+|+.+|.|..||++.+..
T Consensus 44 y~DVtfvve~~rfpAHRvILAaRs-~yFRAlLYgGm~Es~q--~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~ 112 (620)
T KOG4350|consen 44 YSDVTFVVEDTRFPAHRVILAARS-SYFRALLYGGMQESHQ--QLIPLQET--NSEAFRALLRYIYTGKIDLAG 112 (620)
T ss_pred ccceEEEEeccccchhhhhHHHHH-HHHHHHHhhhhhhhhh--cccccccc--cHHHHHHHHHHHhhcceeccc
Confidence 357999999999999998887654 4777776666542210 00011233 689999999999999998766
No 47
>PRK10818 cell division inhibitor MinD; Provisional
Probab=40.05 E-value=36 Score=30.37 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHH-HhhcCcccCCCCCchHH--HHHhhccccccCCCCcccccchHHHHHHhh
Q psy968 27 VFRAILD-YYKGQVIKCPPSVSVQE--LREACDYLLVPFDAHTVRCQNLRGLLHELS 80 (272)
Q Consensus 27 ~f~~ild-yy~~g~~~cp~~~sv~e--lreacdy~~i~f~~~tv~c~~l~~llhels 80 (272)
..+.+.+ .|..=+|-|||+++-.- .-.++|..+||.+.+.....++..++..++
T Consensus 105 ~l~~l~~~~yd~viiD~p~~~~~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~ 161 (270)
T PRK10818 105 VLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILA 161 (270)
T ss_pred HHHHHhhcCCCEEEEeCCCCccHHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHH
Confidence 3343433 68889999999987432 347899999999999998888888876655
No 48
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.81 E-value=16 Score=29.64 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.0
Q ss_pred CCCccchHHHHhhHhCC
Q psy968 216 GIPAAVFRAILDYYKGQ 232 (272)
Q Consensus 216 ~idp~vFr~ILnYYRTG 232 (272)
++||.+||.||+.++.+
T Consensus 40 ~~dp~VFriildLL~~n 56 (88)
T PF12926_consen 40 PMDPEVFRIILDLLRLN 56 (88)
T ss_pred CcChHHHHHHHHHHHcC
Confidence 56999999999999874
No 49
>CHL00175 minD septum-site determining protein; Validated
Probab=37.65 E-value=37 Score=30.68 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred hHHHHHHHHH-----HhhcCcccCCCCCchHHH--HHhhccccccCCCCcccccchHHHHHHhhc
Q psy968 24 SFKVFRAILD-----YYKGQVIKCPPSVSVQEL--REACDYLLVPFDAHTVRCQNLRGLLHELSN 81 (272)
Q Consensus 24 s~~~f~~ild-----yy~~g~~~cp~~~sv~el--reacdy~~i~f~~~tv~c~~l~~llhelsn 81 (272)
+...++.+|+ .|..=+|-|||+++..-+ -+++|..+||.+.+.....++..++..|..
T Consensus 111 ~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~ 175 (281)
T CHL00175 111 TRKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEA 175 (281)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHH
Confidence 3444555443 677788999999865332 378999999999998888888777766543
No 50
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=37.10 E-value=21 Score=28.03 Aligned_cols=27 Identities=37% Similarity=0.663 Sum_probs=22.3
Q ss_pred eEEEEecCC----CccccCCCCCCCCccccc
Q psy968 111 CHVVVLLDD----DTVDWDEAYPPQMGEEYS 137 (272)
Q Consensus 111 chivvl~~~----d~v~wd~~~pp~mgEe~~ 137 (272)
|+|-.+.+. +.+|||+|--+-.|||.-
T Consensus 40 C~V~~~~~~~~~~~~i~W~td~~~L~geEL~ 70 (74)
T cd01816 40 CAVFRLGDGSSKKLRIDWDTDISSLIGEELQ 70 (74)
T ss_pred eEEEEcCCCcccccccchhhhhhhccCceEE
Confidence 788888544 899999999999998863
No 51
>KOG0459|consensus
Probab=36.71 E-value=13 Score=38.04 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=35.8
Q ss_pred HHHHhhccccCCcee---------------------EEEEe---cCCCccccCCCCCCCCcccccccccCcccCCCCCC
Q psy968 97 LPLMVNSAQRGDREC---------------------HVVVL---LDDDTVDWDEAYPPQMGEEYSQSSLSRPTNKNSTN 151 (272)
Q Consensus 97 ~p~mv~~a~~g~rec---------------------hivvl---~~~d~v~wd~~~pp~mgEe~~qivySt~lnk~~~k 151 (272)
+-++|.+|++|++|- |.||+ +||-+|+|..+.=.+.-++...-+- ++..+..+
T Consensus 183 ~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr--~~g~n~~~ 259 (501)
T KOG0459|consen 183 LAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLR--KLGFNPKP 259 (501)
T ss_pred hhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHH--HhcccCCC
Confidence 456788888888774 55554 7999999999887766555554332 44444443
No 52
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=34.79 E-value=38 Score=27.63 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=28.5
Q ss_pred hcCcccCCCCCchH--HHHHhhccccccCCCCcccccchHHHH
Q psy968 36 KGQVIKCPPSVSVQ--ELREACDYLLVPFDAHTVRCQNLRGLL 76 (272)
Q Consensus 36 ~~g~~~cp~~~sv~--elreacdy~~i~f~~~tv~c~~l~~ll 76 (272)
..=+|-|||+.+.. ..-.+||+.+||.+.+.....++..++
T Consensus 64 d~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~ 106 (179)
T cd02036 64 DYILIDSPAGIERGFITAIAPADEALLVTTPEISSLRDADRVK 106 (179)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCcEEEEeCCCcchHHHHHHHH
Confidence 34577899987642 223789999999999876555554444
No 53
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=33.15 E-value=41 Score=29.56 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=43.7
Q ss_pred HHHHHHHhhcC-----cccCCCCCchHHHH------H-hhccccccCCCCcccccchHHHHHHhhchhh
Q psy968 28 FRAILDYYKGQ-----VIKCPPSVSVQELR------E-ACDYLLVPFDAHTVRCQNLRGLLHELSNEGA 84 (272)
Q Consensus 28 f~~ildyy~~g-----~~~cp~~~sv~elr------e-acdy~~i~f~~~tv~c~~l~~llhelsn~ga 84 (272)
|..+++.++.+ ||-|||+.++.++. + .||.+++....+...=.++..++..|.+.|.
T Consensus 102 ~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~ 170 (217)
T cd02035 102 LLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGI 170 (217)
T ss_pred HHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCC
Confidence 77888887777 89999986655432 3 3789999999998888888888877766554
No 54
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.04 E-value=1.7e+02 Score=24.08 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=38.8
Q ss_pred eeecccccCchHHHHHHHHHHhhcCcccCCC--------------------------CCchHHHHHhhccccccCCCCcc
Q psy968 14 IFKTGQLFCKSFKVFRAILDYYKGQVIKCPP--------------------------SVSVQELREACDYLLVPFDAHTV 67 (272)
Q Consensus 14 ~~~~~~~~~~s~~~f~~ildyy~~g~~~cp~--------------------------~~sv~elreacdy~~i~f~~~tv 67 (272)
|=.+|+..|||.. +|--|=+.|++..|. |+|+.|+++..+.. +...-
T Consensus 3 I~e~a~~~gvs~~---tlR~Ye~~GLl~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~lG~sL~eI~~~l~~~----~~~~~ 75 (127)
T TIGR02047 3 IGELAQKTGVSVE---TIRFYEKQGLLPPPARTDNNYRVYTVGHVERLAFIRNCRTLDMSLAEIRQLLRYQ----DKPEK 75 (127)
T ss_pred HHHHHHHHCcCHH---HHHHHHHCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh----hCCCC
Confidence 4467788899985 555566889998762 67888888865531 22334
Q ss_pred cccchHHHHHH
Q psy968 68 RCQNLRGLLHE 78 (272)
Q Consensus 68 ~c~~l~~llhe 78 (272)
.|..+..+|.+
T Consensus 76 ~~~~~~~~l~~ 86 (127)
T TIGR02047 76 SCSDVNALLDE 86 (127)
T ss_pred CHHHHHHHHHH
Confidence 56777776653
No 55
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=29.29 E-value=72 Score=29.72 Aligned_cols=83 Identities=25% Similarity=0.438 Sum_probs=53.1
Q ss_pred ccccccCCCCccc--------ccchHH---HHHHhhchhhHHHHHHHHHHHhHHHH-----hhc----------------
Q psy968 56 DYLLVPFDAHTVR--------CQNLRG---LLHELSNEGARCQFEVFLEDLILPLM-----VNS---------------- 103 (272)
Q Consensus 56 dy~~i~f~~~tv~--------c~~l~~---llhelsn~ga~~~f~~fl~~~i~p~m-----v~~---------------- 103 (272)
|.|+-+.|...|. |++|.= .++..=-.--++|.+.|-.....|+- ...
T Consensus 26 D~FlWNlne~~itpe~FA~~lc~Dl~lp~~~~~~~I~~sI~~Qi~e~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (244)
T PF04855_consen 26 DTFLWNLNEPLITPEEFAEILCEDLDLPPSFFVQQIANSIREQIEEYASVAAHPLFQNPEMEPSEKRLDPEDPYTAFADS 105 (244)
T ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccc
Confidence 6678888877776 555431 11122222346778888766554442 111
Q ss_pred -cccCCceeEEEEecC--------CCccccCCCCCCCCcccccc
Q psy968 104 -AQRGDRECHVVVLLD--------DDTVDWDEAYPPQMGEEYSQ 138 (272)
Q Consensus 104 -a~~g~rechivvl~~--------~d~v~wd~~~pp~mgEe~~q 138 (272)
+..++.++||+|=+| .|.++||=..|+...|+.++
T Consensus 106 ~~~~~~~~~rv~I~LdI~ig~~~l~DqFEWDL~~~~~~PE~FA~ 149 (244)
T PF04855_consen 106 SLGSPDDDLRVIIKLDITIGNHLLVDQFEWDLSNPPNSPEEFAR 149 (244)
T ss_pred cccCCCCceEEEEEEEEEECCEEEEEEEEecCCCCCCCHHHHHH
Confidence 123467999998777 58999998888888888886
No 56
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=27.30 E-value=1.1e+02 Score=24.73 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=41.9
Q ss_pred CCcEEEeeCC--eEEEechHhhhcCCCcchhhcccCCCccc-CCCCCCcEEeccCCCccchHHHHhhH
Q psy968 165 EERVTLVVDN--TRFVLDPALFTAYPNTMLGRMFSSGREFT-HTNDRGEYEVAEGIPAAVFRAILDYY 229 (272)
Q Consensus 165 ~~rV~LNVGG--~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~-~dd~~gEYFFDR~idp~vFr~ILnYY 229 (272)
..-+.+-||. +||.+..+.| +|| ++..++....+.+ | +..|--.+.- +...|++||..+
T Consensus 38 ~G~~~VyVG~~~~Rfvvp~~~L-~hp--~f~~LL~~aeeEfG~-~~~G~l~iPC--~~~~Fe~~l~~l 99 (100)
T PF02519_consen 38 KGHFAVYVGEERRRFVVPVSYL-NHP--LFQELLEQAEEEFGF-DQDGPLTIPC--DVVLFEHLLWLL 99 (100)
T ss_pred CCeEEEEeCccceEEEechHHc-Cch--hHHHHHHHHhhhcCc-CCCCcEEeeC--CHHHHHHHHHHh
Confidence 5678888885 8999988776 456 5777765543333 4 3377788888 888999988754
No 57
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=27.08 E-value=98 Score=24.14 Aligned_cols=30 Identities=40% Similarity=0.462 Sum_probs=20.1
Q ss_pred HHHHHHHHhh-cCcccCCCCCchHHHHHhh-cccc
Q psy968 27 VFRAILDYYK-GQVIKCPPSVSVQELREAC-DYLL 59 (272)
Q Consensus 27 ~f~~ildyy~-~g~~~cp~~~sv~elreac-dy~~ 59 (272)
.||||.+.-- .+. -...+..+||++| +|+.
T Consensus 7 lF~Avs~~l~~~~~---~~~~~~~~lR~~~~~~l~ 38 (121)
T PF02338_consen 7 LFRAVSDQLYGDGG---GSEDNHQELRKAVVDYLR 38 (121)
T ss_dssp HHHHHHHHHCTT-S---SSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 5888877643 111 4456788999998 7766
No 58
>KOG2851|consensus
Probab=26.22 E-value=76 Score=31.95 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=30.3
Q ss_pred ccccCC------CCcccccchHHHHHHhhch--------------------hhHHHHHHHHHHHhHH
Q psy968 58 LLVPFD------AHTVRCQNLRGLLHELSNE--------------------GARCQFEVFLEDLILP 98 (272)
Q Consensus 58 ~~i~f~------~~tv~c~~l~~llhelsn~--------------------ga~~~f~~fl~~~i~p 98 (272)
.|+|+| ++--+|--+..||+||+.. --..+||+|+..++-.
T Consensus 339 VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~nd~~~~~e~~~d~~~~~aL~pyv~~Fe~F~s~l~~~ 405 (412)
T KOG2851|consen 339 VCVPIDVSKVDEFDPEKVPTISDLLEELESLNDEKEYTENRKDLARHGALSPYVEVFEAFVSALIKS 405 (412)
T ss_pred eEeecchhhccccCcccCCcHHHHHHHHhhcccccccccchhhhhhccccchHHHHHHHHHHHHHHh
Confidence 467777 3445689999999999754 1256899999988743
No 59
>PF10802 DUF2540: Protein of unknown function (DUF2540); InterPro: IPR024254 This family of proteins with unknown function appears to be restricted to Methanococcus.; PDB: 2EFV_A.
Probab=25.85 E-value=39 Score=26.67 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=13.1
Q ss_pred CcccccchHHHHHHhhchhh
Q psy968 65 HTVRCQNLRGLLHELSNEGA 84 (272)
Q Consensus 65 ~tv~c~~l~~llhelsn~ga 84 (272)
..|.+..||.+||+|-|.+.
T Consensus 6 k~id~r~lRY~LHklen~~~ 25 (75)
T PF10802_consen 6 KNIDARDLRYYLHKLENLEE 25 (75)
T ss_dssp S---HHHHHHHHHHGGG---
T ss_pred ecCCHHHHHHHHHHHccCCC
Confidence 56788999999999999765
No 60
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=25.77 E-value=34 Score=23.94 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=26.1
Q ss_pred ceeecccccCchHHHHHHHHHHhhcCcccCCCCCchHHHHHhhccccccC
Q psy968 13 KIFKTGQLFCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPF 62 (272)
Q Consensus 13 ~~~~~~~~~~~s~~~f~~ildyy~~g~~~cp~~~sv~elreacdy~~i~f 62 (272)
+.-++|+..|||.+.+..++. |- +..+|+..|...|++|=++.
T Consensus 12 t~~~La~~~gis~~tl~~~~~----~~---~~~~~~~~l~~ia~~l~~~~ 54 (63)
T PF13443_consen 12 TQKDLARKTGISRSTLSRILN----GK---PSNPSLDTLEKIAKALNCSP 54 (63)
T ss_dssp -HHHHHHHHT--HHHHHHHHT----TT--------HHHHHHHHHHHT--H
T ss_pred CHHHHHHHHCcCHHHHHHHHh----cc---cccccHHHHHHHHHHcCCCH
Confidence 456788899999988777654 33 47899999999999987654
No 61
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=25.56 E-value=77 Score=24.09 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=34.8
Q ss_pred CchHHHHHhhcc-ccccCCCCcccccchHHHHHHhhchh-hHHHHHHHHHHHhHHHHhhc
Q psy968 46 VSVQELREACDY-LLVPFDAHTVRCQNLRGLLHELSNEG-ARCQFEVFLEDLILPLMVNS 103 (272)
Q Consensus 46 ~sv~elreacdy-~~i~f~~~tv~c~~l~~llhelsn~g-a~~~f~~fl~~~i~p~mv~~ 103 (272)
+|..||+.+... +-.+++. ....+.+..++.++--++ ..=-|+.|+. ++.++++.|
T Consensus 28 Is~~El~~~l~~~lg~~~~~-~~s~~~v~~i~~~~D~d~~G~I~f~eF~~-l~~~~~~~~ 85 (92)
T cd05025 28 LSKKELKDLLQTELSDFLDA-QKDADAVDKIMKELDENGDGEVDFQEFVV-LVAALTVAC 85 (92)
T ss_pred ECHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHCCCCCCcCcHHHHHH-HHHHHHHHH
Confidence 667777777652 3322222 345567788888875443 3456888874 677777765
No 62
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=24.84 E-value=52 Score=29.75 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=31.3
Q ss_pred hHHHHHHHHHH-----hhcCcccCCCCCchHH--HHHhhccccccCCCCccc
Q psy968 24 SFKVFRAILDY-----YKGQVIKCPPSVSVQE--LREACDYLLVPFDAHTVR 68 (272)
Q Consensus 24 s~~~f~~ildy-----y~~g~~~cp~~~sv~e--lreacdy~~i~f~~~tv~ 68 (272)
....++..|+. |..=+|-|||+.+..= .-.++|+.+||+..+...
T Consensus 68 ~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~al~~aD~vliP~~ps~~d 119 (231)
T PRK13849 68 ELPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLD 119 (231)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHHCCEEEEeccCcHHH
Confidence 34556665444 5556899999998432 235799999999887654
No 63
>KOG2714|consensus
Probab=24.44 E-value=54 Score=33.59 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhhcCcccCCCCCchHHHH-HhhccccccCCC
Q psy968 24 SFKVFRAILDYYKGQVIKCPPSVSVQELR-EACDYLLVPFDA 64 (272)
Q Consensus 24 s~~~f~~ildyy~~g~~~cp~~~sv~elr-eacdy~~i~f~~ 64 (272)
.+++|+-||+|-|||-+.=|.-.+.++|+ ||==|=+.|+--
T Consensus 61 DPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 61 DPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred CchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence 47899999999999999999999999999 888777777643
No 64
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=24.37 E-value=1.4e+02 Score=22.58 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhcC
Q psy968 25 FKVFRAILDYYKGQ 38 (272)
Q Consensus 25 ~~~f~~ildyy~~g 38 (272)
..+|++|++.|+.|
T Consensus 41 ~~If~~i~~l~~~~ 54 (103)
T PF00772_consen 41 RRIFEAILELYREG 54 (103)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 57899999999999
No 65
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=23.98 E-value=30 Score=30.59 Aligned_cols=45 Identities=4% Similarity=-0.025 Sum_probs=33.0
Q ss_pred HHhhcCcccCCCCCchHHHH-----HhhccccccCCCCcccccchHHHHH
Q psy968 33 DYYKGQVIKCPPSVSVQELR-----EACDYLLVPFDAHTVRCQNLRGLLH 77 (272)
Q Consensus 33 dyy~~g~~~cp~~~sv~elr-----eacdy~~i~f~~~tv~c~~l~~llh 77 (272)
+-|..=+|-||++.+...+. .|+|+.+||++.+...-.++..++.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~ 164 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICK 164 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHH
Confidence 35777899999876544443 3899999999998876666655553
No 66
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=23.90 E-value=1.7e+02 Score=22.94 Aligned_cols=55 Identities=7% Similarity=0.223 Sum_probs=36.7
Q ss_pred eeCCeEEEechHhhhcCCCcchhhcccCCCcccCCCCC-CcEEeccCCCccchHHHHhhHhC
Q psy968 171 VVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDR-GEYEVAEGIPAAVFRAILDYYKG 231 (272)
Q Consensus 171 NVGG~rF~t~~sTL~r~PdT~Lg~Mfs~~~~~~~dd~~-gEYFFDR~idp~vFr~ILnYYRT 231 (272)
--+|.+|.+++.....- . ++..|++... +.++. +..-+ .+|++.+++.|+.|...
T Consensus 8 S~Dg~~f~v~~~~a~~S-~-~i~~~l~~~~---~~~~~~~~Ipl-~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 8 SSDGEVFEVEREVARQS-K-TIKAMIEDLG---VDDENNNPIPL-PNVTSKILSKVIEYCEH 63 (104)
T ss_pred eCCCCEEEecHHHHHHH-H-HHHHHHHccC---cccCCCCCccC-CCcCHHHHHHHHHHHHH
Confidence 34899999999987543 2 5677766421 22222 23333 45899999999999875
No 67
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=23.72 E-value=2.1e+02 Score=24.28 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=35.8
Q ss_pred ceeecccccCchHHHHHHHHHHhhcCcccCCC---------------------------CCchHHHHHhhccccccCCCC
Q psy968 13 KIFKTGQLFCKSFKVFRAILDYYKGQVIKCPP---------------------------SVSVQELREACDYLLVPFDAH 65 (272)
Q Consensus 13 ~~~~~~~~~~~s~~~f~~ildyy~~g~~~cp~---------------------------~~sv~elreacdy~~i~f~~~ 65 (272)
+|=.+|+..|||... |--|=+.|++. |+ |+|+.|+++-.| .. +
T Consensus 9 ~IgevAk~~Gvs~~T---LRyYE~~GLl~-p~~r~~~gyR~Y~~~~l~rl~~I~~lr~~G~sL~eI~~ll~---~~-~-- 78 (144)
T PRK13752 9 TIGVFAKAAGVNVET---IRFYQRKGLLP-EPDKPYGSIRRYGEADVTRVRFVKSAQRLGFSLDEIAELLR---LE-D-- 78 (144)
T ss_pred cHHHHHHHHCcCHHH---HHHHHHCCCCC-CCccCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHh---cc-C--
Confidence 456678889999864 33455789886 53 467888877554 11 2
Q ss_pred cccccchHHHHHH
Q psy968 66 TVRCQNLRGLLHE 78 (272)
Q Consensus 66 tv~c~~l~~llhe 78 (272)
.-.|.....+|.+
T Consensus 79 ~~~~~~~~~ll~~ 91 (144)
T PRK13752 79 GTHCEEASSLAEH 91 (144)
T ss_pred CCCHHHHHHHHHH
Confidence 2346666666644
No 68
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.35 E-value=62 Score=28.12 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=25.8
Q ss_pred HhhcCcccCCCCCch--HHHHHhhccccccCCCCcc
Q psy968 34 YYKGQVIKCPPSVSV--QELREACDYLLVPFDAHTV 67 (272)
Q Consensus 34 yy~~g~~~cp~~~sv--~elreacdy~~i~f~~~tv 67 (272)
+|..=+|-|||+++- ..+-+++|+++||...+..
T Consensus 114 ~~D~viiD~pp~~~~~~~~~l~~ad~vii~~~~~~~ 149 (246)
T TIGR03371 114 ARDWVLIDVPRGPSPITRQALAAADLVLVVVNADAA 149 (246)
T ss_pred CCCEEEEECCCCchHHHHHHHHhCCeEEEEeCCCHH
Confidence 356778899998764 2334899999999998643
No 69
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.04 E-value=71 Score=28.73 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCcccCCCCCch---HHHHHhhccccccCCCCcccccchHHHHHHhhchhh
Q psy968 28 FRAILDYYKGQVIKCPPSVSV---QELREACDYLLVPFDAHTVRCQNLRGLLHELSNEGA 84 (272)
Q Consensus 28 f~~ildyy~~g~~~cp~~~sv---~elreacdy~~i~f~~~tv~c~~l~~llhelsn~ga 84 (272)
+..+-+-|..=+|-|||.... .-+-..||..+|....+...-.++...+..|.+-|+
T Consensus 206 l~~l~~~yD~ViiD~pp~~~~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~ 265 (274)
T TIGR03029 206 LNKVMGDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGV 265 (274)
T ss_pred HHHHHhcCCEEEEeCCCcccccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 333444577778999998654 446778999999999999998999998888877554
No 70
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=22.82 E-value=65 Score=29.27 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.9
Q ss_pred eeecccccCchHHHHHHHHHHhhcCccc
Q psy968 14 IFKTGQLFCKSFKVFRAILDYYKGQVIK 41 (272)
Q Consensus 14 ~~~~~~~~~~s~~~f~~ildyy~~g~~~ 41 (272)
+.=-|-++|+|..|=++|++-++.|+++
T Consensus 3 lii~ADDfG~s~~vn~gI~~~~~~G~vt 30 (261)
T PF04794_consen 3 LIINADDFGLSPGVNRGIIEAFENGIVT 30 (261)
T ss_dssp EEEEEEEETSSHHHHHHHHHHHHCCT-S
T ss_pred EEEECCCCCCCHHHHHHHHHHHHcCCce
Confidence 4445889999999999999999999874
No 71
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=21.85 E-value=1.2e+02 Score=26.15 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCcccCCCCCchH--HHHHhhccccccCCCCccc
Q psy968 27 VFRAILDYYKGQVIKCPPSVSVQ--ELREACDYLLVPFDAHTVR 68 (272)
Q Consensus 27 ~f~~ildyy~~g~~~cp~~~sv~--elreacdy~~i~f~~~tv~ 68 (272)
.+..+.+-|..=+|-|||+++.. ..-.++|..+||.+.+...
T Consensus 101 ~l~~l~~~yD~VIiD~p~~~~~~~~~~l~~ad~vliv~~~~~~s 144 (251)
T TIGR01969 101 VLKEIIDDTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISS 144 (251)
T ss_pred HHHHHHhhCCEEEEeCCCccCHHHHHHHHhCCeEEEEECCCCch
Confidence 33444456888899999999854 3357899999999987543
No 72
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=21.60 E-value=38 Score=30.68 Aligned_cols=46 Identities=4% Similarity=-0.053 Sum_probs=34.5
Q ss_pred HhhcCcccCCCCCchHH-----HHHhhccccccCCCCcccccchHHHHHHh
Q psy968 34 YYKGQVIKCPPSVSVQE-----LREACDYLLVPFDAHTVRCQNLRGLLHEL 79 (272)
Q Consensus 34 yy~~g~~~cp~~~sv~e-----lreacdy~~i~f~~~tv~c~~l~~llhel 79 (272)
-|..=+|-||++..... ...|+|+.+||...+...-.++..++.-+
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i 166 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGI 166 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHH
Confidence 47888999988664433 34689999999999877777776666544
No 73
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=21.05 E-value=74 Score=29.20 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=22.8
Q ss_pred HHHHHHHHH-HhHHHHhhccccCCcee
Q psy968 86 CQFEVFLED-LILPLMVNSAQRGDREC 111 (272)
Q Consensus 86 ~~f~~fl~~-~i~p~mv~~a~~g~rec 111 (272)
--|.-|||. .|||++|...+.||.|-
T Consensus 121 wtfS~wLESVAILPQL~mLq~~Getes 147 (214)
T COG5196 121 WTFSLWLESVAILPQLVMLQEAGETES 147 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcce
Confidence 568899997 69999999999999873
No 74
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=20.72 E-value=87 Score=24.25 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=32.2
Q ss_pred CchHHHHHhhccccccCCCCcccccchHHHHHHhhchh-hHHHHHHHHHHHhHHHHhhc
Q psy968 46 VSVQELREACDYLLVPFDAHTVRCQNLRGLLHELSNEG-ARCQFEVFLEDLILPLMVNS 103 (272)
Q Consensus 46 ~sv~elreacdy~~i~f~~~tv~c~~l~~llhelsn~g-a~~~f~~fl~~~i~p~mv~~ 103 (272)
+|..||+++--=.+-.+-.....=+.+..++.++--+| -.--|+.|+. ++.++++.|
T Consensus 29 Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~-l~~~l~~~~ 86 (93)
T cd05026 29 LSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVV-LVAALTVAC 86 (93)
T ss_pred ECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHH-HHHHHHHHH
Confidence 67788877542211101011122246888888884332 3556888866 677777765
No 75
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.61 E-value=91 Score=27.65 Aligned_cols=40 Identities=28% Similarity=0.447 Sum_probs=28.6
Q ss_pred HhhcCcccCCCCCch--HHHHHhhccccccCCCCcccccchH
Q psy968 34 YYKGQVIKCPPSVSV--QELREACDYLLVPFDAHTVRCQNLR 73 (272)
Q Consensus 34 yy~~g~~~cp~~~sv--~elreacdy~~i~f~~~tv~c~~l~ 73 (272)
=|..=+|-|||+.+. .-.--|+|+++||...+...=..+.
T Consensus 119 ~yD~iiID~pp~l~~l~~nal~asd~vlIP~~~~~~~~~~~~ 160 (259)
T COG1192 119 DYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLEGLE 160 (259)
T ss_pred CCCEEEECCCCchhHHHHHHHHHcCeeEEecCchHHHHHHHH
Confidence 477779999999832 2234789999999987765443333
No 76
>PF03201 HMD: H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase; InterPro: IPR004889 This entry represents the C-terminal domain of H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenases. The N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase system of methanogenic archaea is composed of H2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd, represented by this entry) and F420-dependent methylenetetrahydromethanopterin dehydrogenase (IPR002844 from INTERPRO) [, ]. Hmd is an iron-sulphur-cluster-free enzyme that contains an intrinsic CO ligand bound to iron []. This domain is found at the C terminus of two distinct subgroups: one has been experimentally characterised as H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase (Hmd or HmdI), and the other one contains isozymes that have not been experimentally characterised (HmdII and HmdIII). Because all three isozyme forms are present in each of the corresponding sequenced genomes, it has been suggested that HmdII and HmdIII may not exhibit Hmd activity and may have a different biological function [].; GO: 0018537 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase activity, 0047068 N5,N10-methenyltetrahydromethanopterin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 3F46_A 2B0J_A 3DAG_A 3DAF_A 3H65_A 3F47_A.
Probab=20.44 E-value=53 Score=27.16 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHhhcC--cccCC
Q psy968 23 KSFKVFRAILDYYKGQ--VIKCP 43 (272)
Q Consensus 23 ~s~~~f~~ildyy~~g--~~~cp 43 (272)
+.|.++..||+||..| |+.=|
T Consensus 14 vTAv~~agiL~Y~~v~t~il~AP 36 (98)
T PF03201_consen 14 VTAVTYAGILDYYDVGTKILGAP 36 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh
Confidence 4678999999999997 44444
Done!