RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy968
(272 letters)
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 58.2 bits (141), Expect = 3e-11
Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFR 223
+E RV + V R A P T L R+ + EY VF
Sbjct: 3 AENRVIINVGGIRHETYKATLKKIPATRLSRLTE--GMLNYDPVLNEYFFDR--HPGVFA 58
Query: 224 AILDYYKGQVIKCPPSVSVQEL-REACDYLLVPFDAHTVRCQNLRRK 269
I++YY+ + P V E + L
Sbjct: 59 QIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAH 105
Score = 33.9 bits (78), Expect = 0.013
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 5 AVCKCRRPKIFKTGQLFC-KSFKVFRAILDYYKGQVIKCPPSVSVQELREACDY 57
+ + + F + VF I++YY+ + P V E ++
Sbjct: 33 RLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEF 86
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 50.9 bits (122), Expect = 2e-08
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 156 SGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAE 215
+ A+ +E + L V RF YP+T+LG +EF D EY
Sbjct: 3 APADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTE---KEFFFNEDTKEYFFDR 59
Query: 216 GIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDY 251
VFR +L++Y+ + P + + +
Sbjct: 60 --DPEVFRCVLNFYRTGKLHYPRYECISAYDDELAF 93
Score = 32.0 bits (73), Expect = 0.076
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 26 KVFRAILDYYKGQVIKCPPSVSVQELREACDY 57
+VFR +L++Y+ + P + + +
Sbjct: 62 EVFRCVLNFYRTGKLHYPRYECISAYDDELAF 93
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 51.0 bits (122), Expect = 2e-08
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 162 PTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAV 221
+E + L V RF YP+T+LG +EF D EY V
Sbjct: 31 KRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTE---KEFFFNEDTKEYFFDR--DPEV 85
Query: 222 FRAILDYYKGQVIKCPPSVSVQELREACDY 251
FR +L++Y+ + P + + +
Sbjct: 86 FRCVLNFYRTGKLHYPRYECISAYDDELAF 115
Score = 32.1 bits (73), Expect = 0.070
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 26 KVFRAILDYYKGQVIKCPPSVSVQELREACDY 57
+VFR +L++Y+ + P + + +
Sbjct: 84 EVFRCVLNFYRTGKLHYPRYECISAYDDELAF 115
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 51.9 bits (124), Expect = 2e-08
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 155 SSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVA 214
S+ A + + V L V T F+ P + L R+ + + D +
Sbjct: 1 SALAQRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI 60
Query: 215 EGIPAAVFRAILDYYKGQVIKCPPSVSVQEL-REACDYLLVPFDAHTVRCQNLRRK 269
+ P F +L+Y + + ++ + + EA Y + ++ R+
Sbjct: 61 DRDP-TYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKL---VKDKIRE 112
Score = 32.2 bits (73), Expect = 0.11
Identities = 7/69 (10%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 26 KVFRAILDYYKGQVIKCPPSVSVQEL-REACDYLLVPFDAHTVRCQNLRGLLHELSNEGA 84
F +L+Y + + ++ + + EA Y + ++ +++
Sbjct: 65 TYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKL---VKDKIRERDSKTSQVP 121
Query: 85 RCQFEVFLE 93
L+
Sbjct: 122 VKHVYRVLQ 130
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 48.5 bits (116), Expect = 8e-08
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFR 223
+ V L V T F+ P + L R+ + + D + + P F
Sbjct: 4 VSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDP-TYFG 62
Query: 224 AILDYYKGQVIKCPPSVSVQEL-REACDYLLVPFDAHTVRCQNLRRK 269
+L+Y + + ++ + + EA Y + + ++ R+
Sbjct: 63 PVLNYLRHGKLVINKDLAEEGVLEEAEFYNI---TSLIKLVKDKIRE 106
Score = 30.0 bits (68), Expect = 0.30
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 26 KVFRAILDYYKGQVIKCPPSVSVQEL-REACDYLLVP 61
F +L+Y + + ++ + + EA Y +
Sbjct: 59 TYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITS 95
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 46.2 bits (110), Expect = 6e-07
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 175 TRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVI 234
TRF YP+T+LG R+F + + +Y +FR IL++Y+ +
Sbjct: 9 TRFQTWQDTLERYPDTLLGSSE---RDFFYHPETQQYFFDR--DPDIFRHILNFYRTGKL 63
Query: 235 KCPPSVSVQELREACDY 251
P + E +
Sbjct: 64 HYPRHECISAYDEELAF 80
Score = 32.3 bits (74), Expect = 0.035
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 26 KVFRAILDYYKGQVIKCPPSVSVQELREACDY 57
+FR IL++Y+ + P + E +
Sbjct: 49 DIFRHILNFYRTGKLHYPRHECISAYDEELAF 80
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton transport,
membrane protein; 1.51A {Aplysia californica} SCOP:
d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E*
1qdw_A 1dsx_A
Length = 100
Score = 45.1 bits (107), Expect = 1e-06
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 166 ERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAI 225
ERV + V RF +P+T+LG R + R EY F AI
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQK--RNRYYDPLRNEYFFDR--NRPSFDAI 56
Query: 226 LDYYK-GQVIKCPPSVSVQELREACDY 251
L +Y+ G ++ P +V + E +
Sbjct: 57 LYFYQSGGRLRRPVNVPLDVFSEEIKF 83
Score = 28.2 bits (63), Expect = 1.1
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 21 FCKSFKVFRAILDYYK-GQVIKCPPSVSVQELREACDY 57
F ++ F AIL +Y+ G ++ P +V + E +
Sbjct: 46 FDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKF 83
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 44.7 bits (105), Expect = 2e-05
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 164 SEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFR 223
S ERV + + RF +P T+LG R R EY F
Sbjct: 50 SSERVVINISGLRFETQLKTLAQFPETLLGDPKK--RMRYFDPLRNEYFFDR--NRPSFD 105
Query: 224 AILDYYK-GQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQN 265
AIL YY+ G ++ P +V + E + + +A + ++
Sbjct: 106 AILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 148
Score = 30.8 bits (69), Expect = 0.51
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 27 VFRAILDYYK-GQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHE 78
F AIL YY+ G ++ P +V + E + + +A + ++ G + E
Sbjct: 103 SFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED-EGYIKE 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 46/298 (15%), Positives = 93/298 (31%), Gaps = 104/298 (34%)
Query: 18 GQLFCKSFKVFRAILD----YYKGQ--------VIKCPPSVSV-------QELREACDYL 58
G K+ K + + + ++K VI P ++++ + +RE +Y
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE--NYS 1689
Query: 59 LVPFDAHTVRCQNLRGLLHELSNEGARCQFEVFLEDLIL-----P-LMVNS-AQRGDREC 111
+ F+ + E++ F L P L + A
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA------ 1743
Query: 112 HVVVLLDDDTVDWDEAYPPQMGE---EYS-----QSSLS----------R--------PT 145
L + D + G EY+ +S R P
Sbjct: 1744 -FEDLKSKGLIPADATF---AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 146 NKNSTNDHTSSGANTIPT------SEERVTLVVD----NTRFVLDPALFTAYPNTMLGRM 195
++ +++ N P S+E + VV+ T ++++ N
Sbjct: 1800 DELGRSNYGMIAIN--PGRVAASFSQEALQYVVERVGKRTGWLVEIV------N------ 1845
Query: 196 FSSGREFTHTNDRGE-YEVAEGIPAAVFRA--ILDYYKGQ---VIKCPPSVSVQELRE 247
+ N + Y VA G A+ +L++ K Q +I+ S+S++E+
Sbjct: 1846 ------Y---NVENQQY-VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 38.9 bits (90), Expect = 0.001
Identities = 43/297 (14%), Positives = 86/297 (28%), Gaps = 114/297 (38%)
Query: 12 PKIFKTGQLFCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVP---------- 61
P I QL + V +L + G++ + LV
Sbjct: 239 PLIGVI-QLAH--YVVTAKLLGFTPGELRSYLKGATG------HSQGLVTAVAIAETDSW 289
Query: 62 --FDAHTVRCQNLRGLLHELSNEGARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLLDD 119
F + + L G RC E + + P ++ +
Sbjct: 290 ESFFVSVRKA--ITVLFFI----GVRCY-EAYPNTSLPPSIL-----------------E 325
Query: 120 DTVDWDEAYPPQM----GEEYSQSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNT 175
D+++ +E P M +Q + NK TN H +P + ++V + + N
Sbjct: 326 DSLENNEGVPSPMLSISN--LTQEQVQDYVNK--TNSH-------LP-AGKQVEISLVNG 373
Query: 176 R--FVLDPALFTAYPNTMLG-----------------RMFSSGR--EFT----------H 204
V+ + P ++ G R+ S R +F+ H
Sbjct: 374 AKNLVV-----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 205 TNDRGEY--EVAEGIPAAVFRAILDYYKGQVIKCPPSVSV------QELREACDYLL 253
+ ++ I + + + + + I+ P V +LR +
Sbjct: 429 S----HLLVPASDLINKDLVKNNVS-FNAKDIQIP----VYDTFDGSDLRVLSGSIS 476
Score = 35.0 bits (80), Expect = 0.024
Identities = 35/219 (15%), Positives = 63/219 (28%), Gaps = 74/219 (33%)
Query: 98 PLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPPQMGEEYSQSSLSRPTNKNSTNDHTSSG 157
PL ++ G E ++V T + A Q+ E++ L PT + +D ++
Sbjct: 8 PLTLSH---GSLEHVLLV----PTASFFIA--SQLQEQF-NKILPEPTEGFAADDEPTT- 56
Query: 158 ANTIPTSEERVTLVVDNTRF------VLDPALFTAYP---NTMLGRMFSSGREFTHTND- 207
E LV +F +++P+ + N L F + ND
Sbjct: 57 ------PAE---LV---GKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FE--NCYLEGNDI 101
Query: 208 ----RGEYEVAEGIPAAVFRAILDYYKGQVI------KCPPS----------VSV----- 242
+ + I +Y +++ K S +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 243 -Q--------ELREA-CDY--LLVPF-DAHTVRCQNLRR 268
Q ELR+ Y L+ L R
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Score = 31.9 bits (72), Expect = 0.27
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 40 IKCPPSV-------SVQELREACDYL--LVPFDAHTVRCQNLRGLLHELSNEGARCQFEV 90
K P + S ++L+ + +L PF H+ L ++ + +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--HS---HLLVPASDLINKDLVKNNVSF 450
Query: 91 FLEDLILPLMVNSAQRG-D-RECH------VVVLLDDDTVDWDEA 127
+D+ +P V G D R +V + V W+
Sbjct: 451 NAKDIQIP--VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 38.8 bits (91), Expect = 3e-04
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
VT++V++ +F +L + + Y + + FS + I A +F
Sbjct: 34 VTVIVEDRKFRAHKNIL--SASSTYFHQL----FSVAGQVVEL---------SFIRAEIF 78
Query: 223 RAILDY-YKGQVIKCPPSVSVQELREACDYLLVPF 256
IL+Y Y ++++ + + EL ++ L V F
Sbjct: 79 AEILNYIYSSKIVRVRSDL-LDELIKSGQLLGVKF 112
Score = 28.4 bits (64), Expect = 1.0
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 26 KVFRAILDY-YKGQVIKCPPSVSVQELREACDYLLVPF 62
++F IL+Y Y ++++ + + EL ++ L V F
Sbjct: 76 EIFAEILNYIYSSKIVRVRSDL-LDELIKSGQLLGVKF 112
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 34.6 bits (80), Expect = 0.010
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 21/94 (22%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
V++VV F VL A ++Y +F++ R E+ + F
Sbjct: 36 VSVVVKGHAFKAHRAVL--AASSSYFRD----LFNNSR-------SAVVELPAAVQPQSF 82
Query: 223 RAILDY-YKGQVIKCPPSVSVQELREACDYLLVP 255
+ IL + Y G++ L +L +
Sbjct: 83 QQILSFCYTGRL--SMNVGDQDLLMYTAGFLQIQ 114
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 33.7 bits (78), Expect = 0.014
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
T+V+ +F VL A F+ Y + + T++ + + A F
Sbjct: 25 CTIVIGEFQFKAHRNVL--ASFSEYFGAI----------YRSTSENNVFLDQSQVKADGF 72
Query: 223 RAILDY-YKGQVIKCPPSVSVQELREACDYLLVP 255
+ +L++ Y G + +V+E+ +A DYL V
Sbjct: 73 QKLLEFIYTGTLNLDSW--NVKEIHQAADYLKVE 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.021
Identities = 55/320 (17%), Positives = 95/320 (29%), Gaps = 120/320 (37%)
Query: 11 RPKIFKTGQLFCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAH----- 65
R +++ Q+F K V R L Y ++ + + ELR A +L+
Sbjct: 116 RDRLYNDNQVFAKYN-VSR--LQPYL-KLRQA-----LLELRPA-KNVLI----DGVLGS 161
Query: 66 --TVRCQNLRGLLHE-LSNEGARCQ--FEVF----------------LEDLILPLMVNSA 104
T + + + +C+ F++F L+ L+ + N
Sbjct: 162 GKTW-------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 105 QRGDREC---------------------HVVVLLDDDTVDWDEAYPPQMGEEYSQSS--- 140
R D + LL V + + ++ S
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QN----AKAWNAFNLSCKIL 269
Query: 141 -LSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSG 199
+R K T+ +++ I +TL D + +L + L R
Sbjct: 270 LTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPR----- 320
Query: 200 REFTHTNDRGEYEVAEGIP------AAVFR---AILDYYK-------GQVIKCPPSVSVQ 243
EV P A R A D +K +I+ S++V
Sbjct: 321 ------------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVL 366
Query: 244 ---ELREACDYLLV-PFDAH 259
E R+ D L V P AH
Sbjct: 367 EPAEYRKMFDRLSVFPPSAH 386
Score = 34.4 bits (78), Expect = 0.045
Identities = 36/264 (13%), Positives = 75/264 (28%), Gaps = 92/264 (34%)
Query: 20 LFCKSFKVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVRCQNLRGLLHEL 79
+ +S + A D +K + + E+ +L P + R + L
Sbjct: 332 IIAESIRDGLATWDNWKHVNCD-----KLTTIIESSLNVLEPAE--------YRKMFDRL 378
Query: 80 SNEGARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDW---DEAYPPQMGEEY 136
S VF +P ++ + ++ W ++ + +
Sbjct: 379 S---------VFPPSAHIPTIL-----------LSLI-------WFDVIKSDVMVVVNKL 411
Query: 137 SQSSLSRPTNKNSTNDHTSSGANTIP--------TSEERVTL---VVDNTRFVLDPALFT 185
+ SL K + T S IP E L +VD+
Sbjct: 412 HKYSL---VEKQP-KESTIS----IPSIYLELKVKLENEYALHRSIVDHYNIPK------ 457
Query: 186 AYPNTMLGRMFSSGREFTH------TNDRGEYEVAEGIPAAVFRAI-LDY--------YK 230
+ + L + ++H + E +FR + LD+ +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-------MTLFRMVFLDFRFLEQKIRHD 510
Query: 231 GQVIKCPPSVS--VQELREACDYL 252
S+ +Q+L+ Y+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYI 534
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 33.0 bits (76), Expect = 0.032
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 22/94 (23%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
TL V F VL A + + ++ + G V A +F
Sbjct: 27 ATLDVGGLVFKAHWSVL--ACCSHFFQSLY------------GDGSGGSVVLPAGFAEIF 72
Query: 223 RAILDY-YKGQVIKCPPSVSVQELREACDYLLVP 255
+LD+ Y G + S + ++ A L VP
Sbjct: 73 GLLLDFFYTGHL--ALTSGNRDQVLLAARELRVP 104
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 32.2 bits (74), Expect = 0.049
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 23/94 (24%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
V ++VD+ F VL A + +F + Y + + + F
Sbjct: 31 VVIMVDSQEFHAHRTVL--ACTSKMFEI----LFHRNSQ--------HYTL-DFLSPKTF 75
Query: 223 RAILDY-YKGQVIKCPPSVSVQELREACDYLLVP 255
+ IL+Y Y + + + +L A + L +
Sbjct: 76 QQILEYAYTATL--QAKAEDLDDLLYAAEILEIE 107
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 32.2 bits (74), Expect = 0.064
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 26/98 (26%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSG-REFTHTNDRGEYEVAEGIPAAV 221
V ++V+ F VL A + Y +F+SG + + YE+ + + A
Sbjct: 28 VVILVEGREFPTHRSVL--AACSQYFKK----LFTSGAVV----DQQNVYEI-DFVSAEA 76
Query: 222 FRAILDY-YKGQVIKCPPSVS---VQELREACDYLLVP 255
A++D+ Y + +VS V ++ A L +P
Sbjct: 77 LTALMDFAYTATL-----TVSTANVGDILSAARLLEIP 109
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 31.4 bits (72), Expect = 0.084
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 23/94 (24%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
T VVD F VL A + Y + + + + + AA
Sbjct: 30 CTFVVDGVHFKAHKAVL--AACSEYFKMLF------------VDQKDVVHL-DISNAAGL 74
Query: 223 RAILDY-YKGQVIKCPPSVSVQELREACDYLLVP 255
+L++ Y ++ +V ++ +L +
Sbjct: 75 GQVLEFMYTAKL--SLSPENVDDVLAVATFLQMQ 106
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 31.5 bits (72), Expect = 0.10
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 27/94 (28%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
+ V + F VL A + RG++ + EGI + F
Sbjct: 33 TLITVGSQEFPAHSLVL--AGVSQQ--------LGR---------RGQWALGEGISPSTF 73
Query: 223 RAILDY-YKGQVIKCPPSVSVQELREACDYLLVP 255
+L++ Y V ++ L+EA L V
Sbjct: 74 AQLLNFVYGESV--ELQPGELRPLQEAARALGVQ 105
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 31.1 bits (71), Expect = 0.13
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 25/97 (25%)
Query: 168 VTLVVDNTRF-----VLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVF 222
VTL+V+ F VL A + Y + + + E + A F
Sbjct: 35 VTLIVERKEFRAHRAVL--AACSEYFWQ----ALVGQTK-----NDLVVSLPEEVTARGF 83
Query: 223 RAILDY-YKGQVIKCPPSVS---VQELREACDYLLVP 255
+L + Y ++ +S ++E+ ++L +
Sbjct: 84 GPLLQFAYTAKL-----LLSRENIREVIRCAEFLRMH 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.8 bits (69), Expect = 0.32
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 73 RGLLHELSNEGARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPPQM 132
+ +++ A+ + V L+ ++ P + + R H +VL +
Sbjct: 69 MQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCL--DR 126
Query: 133 GEEYSQSSLSRPTNKNSTNDHTSSGANTIPTSE-------ERVTLVVDNTRFVLDPAL 183
G + L + D + + +P S + + + RF +D +L
Sbjct: 127 GGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFRIDASL 184
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 27.9 bits (62), Expect = 3.1
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 220 AVFRAILDYYKGQVIKCPPSVSVQELREACDYLLV 254
A+ R+I D Y + P V+ + L++
Sbjct: 221 AMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLIL 255
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.0 bits (62), Expect = 3.8
Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 11/147 (7%)
Query: 117 LDDDTVDWDEAYPPQMGEEYSQSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTR 176
+D + V W++ + + + L RP S + + S G + I + ++ ++ +
Sbjct: 780 IDTEAVAWEKFLAAEAECALTNARLYRP--DYSEDFNFSLGESCIHMARRKIAKLIGDV- 836
Query: 177 FVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILDYYKGQVIKC 236
+ + FS G T+ G +P A L Y
Sbjct: 837 --------PSVEGMLRHCRFSGGATTTNNRSYGHPSFKFALPQACTPRALKYVLALRAST 888
Query: 237 PPSVSVQELREACDYLLVPFDAHTVRC 263
+ + ++ + VP ++ T RC
Sbjct: 889 HFDIRISDISPFNKAVTVPKNSKTDRC 915
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB:
2ea1_A* 2pqy_A* 2z70_A*
Length = 245
Score = 27.2 bits (59), Expect = 5.5
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 19 QLFCKSFKVFRA--ILDYYKGQVIKCPPSVSVQELREA--CDYLLVPFDAHTVRCQNLRG 74
F ++ + + K +VS ++ A + A + CQ
Sbjct: 143 AYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNPA 202
Query: 75 LLHEL 79
L E+
Sbjct: 203 YLTEI 207
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 26.7 bits (59), Expect = 7.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 220 AVFRAILD-YYKGQVIKCPPSVSVQELREACDYLLV 254
A+ R+I D Y K +I P V+ + + D L++
Sbjct: 192 AMSRSIGDRYLKPSII-PDPEVTAVKRVKEDDCLIL 226
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 26.8 bits (60), Expect = 8.6
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 213 VAEGIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVR 262
V G P F + + YY + P+ +Q R DY F AHT
Sbjct: 416 VQAGTPIPTFTSAISYYDSYRSENLPANLIQAQR---DY----FGAHTYE 458
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 26.8 bits (60), Expect = 8.6
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 213 VAEGIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVR 262
V GIP F A + YY P+ +Q R DY F AHT +
Sbjct: 424 VQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQR---DY----FGAHTYK 466
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,236,551
Number of extensions: 248968
Number of successful extensions: 569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 46
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)