RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy968
         (272 letters)



>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare
           (Aplysia californica) [TaxId: 6500]}
          Length = 100

 Score = 64.8 bits (158), Expect = 3e-14
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 166 ERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAI 225
           ERV + V   RF         +P+T+LG      R   +   R EY          F AI
Sbjct: 1   ERVVINVSGLRFETQLKTLNQFPDTLLGNPQK--RNRYYDPLRNEYFFDR--NRPSFDAI 56

Query: 226 LDYYK-GQVIKCPPSVSVQELREACDY 251
           L +Y+ G  ++ P +V +    E   +
Sbjct: 57  LYFYQSGGRLRRPVNVPLDVFSEEIKF 83



 Score = 30.2 bits (68), Expect = 0.073
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 27 VFRAILDYYK-GQVIKCPPSVSVQELREACDY 57
           F AIL +Y+ G  ++ P +V +    E   +
Sbjct: 52 SFDAILYFYQSGGRLRRPVNVPLDVFSEEIKF 83


>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
           {California sea hare (Aplysia californica) [TaxId:
           6500]}
          Length = 103

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 165 EERVTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRA 224
           E RV + V   R     A     P T L R+        +     EY         VF  
Sbjct: 1   ENRVIINVGGIRHETYKATLKKIPATRLSRLTE--GMLNYDPVLNEYFFDR--HPGVFAQ 56

Query: 225 ILDYYKGQVIKCPPSVSVQELREACDY 251
           I++YY+   +  P  V      E  ++
Sbjct: 57  IINYYRSGKLHYPTDVCGPLFEEELEF 83



 Score = 32.6 bits (74), Expect = 0.011
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 26 KVFRAILDYYKGQVIKCPPSVSVQELREACDY 57
           VF  I++YY+   +  P  V      E  ++
Sbjct: 52 GVFAQIINYYRSGKLHYPTDVCGPLFEEELEF 83


>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 105

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 168 VTLVVDNTRFVLDPALFTAYPNTMLGRMFSSGREFTHTNDRGEYEVAEGIPAAVFRAILD 227
           + L V  TRF         YP+T+LG      R+F +  +  +Y         +FR IL+
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGSSE---RDFFYHPETQQYFFDR--DPDIFRHILN 56

Query: 228 YYKGQVIKCPPSVSVQELREACDY 251
           +Y+   +  P    +    E   +
Sbjct: 57  FYRTGKLHYPRHECISAYDEELAF 80



 Score = 31.8 bits (72), Expect = 0.021
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 26 KVFRAILDYYKGQVIKCPPSVSVQELREACDY 57
           +FR IL++Y+   +  P    +    E   +
Sbjct: 49 DIFRHILNFYRTGKLHYPRHECISAYDEELAF 80


>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase
           (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}
          Length = 297

 Score = 29.2 bits (65), Expect = 0.43
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 213 VAEGIPAAVFRAILDYYKGQVIKCPPSVSVQELREACDYLLVPFDAHTVR 262
           V  GIP   F   L +Y G      P+  +Q  R   DY    F AHT  
Sbjct: 237 VQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQR---DY----FGAHTYE 279


>d1tf4a2 b.2.2.2 (A:461-605) Endo/exocellulase:cellobiose E-4,
           C-terminal domain {Thermomonospora fusca [TaxId: 2021]}
          Length = 145

 Score = 26.7 bits (59), Expect = 2.0
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 138 QSSLSRPTNKNSTNDHTSSGANTIPTSEERVTLVVDNTR 176
           Q  ++     + +ND +  G          + L  D   
Sbjct: 101 QFRIAGGPGWDPSNDWSFQGIGNELAPAPYIVLYDDGVP 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,034,584
Number of extensions: 47257
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 11
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.9 bits)