BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9685
(979 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 59/94 (62%)
Query: 582 LTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID 641
L S+ C+C GY+ C +D++ECV++ CQN A C+D + + C C PG+EG CE D
Sbjct: 25 LGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD 84
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
EC S+PC++ G+C D++ F C C + G C+
Sbjct: 85 ECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 638 KEIDECL--SNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQD 695
+++DEC +NPC + G+C + L F C C + Y G RCE + C PC A C D
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE-IDVNECVSNPCQNDATCLD 61
Query: 696 TKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATG 754
+I + C C PGY G CE+N DECAS PC ++G+C+D +N F C C TG
Sbjct: 62 -QIGEF-----QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 599 AVDIDECV--THNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCED 656
A D+DEC + C++ +CI+ + + C+C G+ G CE +++EC+SNPC N C D
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 657 RLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRG 716
++ F C C Y G CE + CA PC C D KI+ + C+CP G+ G
Sbjct: 62 QIGEFQCICMPGYEGVHCE-VNTDECASSPCLHNGRCLD-KINEF-----QCECPTGFTG 114
Query: 717 SRCEINI 723
C++++
Sbjct: 115 HLCQVDL 121
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 813 ILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF-PDPCKDEP 871
+ GYTG CEID+NEC S+ C N+ C++Q G+++C C G C D C P
Sbjct: 33 LQGYTGPRCEIDVNEC--VSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP 90
Query: 872 CQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C + G C + +++C+C G+TG C
Sbjct: 91 CLHNGRCLDKIN---EFQCECPTGFTGHLC 117
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKE 639
D + + C C GY C V+ DEC + C + RC+D + + CEC G+ G LC+ +
Sbjct: 61 DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVD 120
Query: 640 I 640
+
Sbjct: 121 L 121
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQNGGTCHEDC 882
D++EC L ++ C + G+CIN G ++C C G C + C PCQN TC +
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD-- 61
Query: 883 RHQADYKCDCLPGWTGKNC 901
+++C C+PG+ G +C
Sbjct: 62 -QIGEFQCICMPGYEGVHC 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 722 NIDECASG--PCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLG 779
++DEC+ G PC+++G+CI+ + +F C C TG E+ +
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRC----EIDVN------------- 46
Query: 780 YTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNG 839
EC S L G Q + GY G CE++ +EC +S C +NG
Sbjct: 47 --------ECVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEVNTDEC--ASSPCLHNG 95
Query: 840 ECINQPGDYKCACQFDTCGYLC 861
C+++ +++C C G+LC
Sbjct: 96 RCLDKINEFQCECPTGFTGHLC 117
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 59/94 (62%)
Query: 582 LTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID 641
L S+ C+C GY+ C +D++ECV++ CQN A C+D + + C C PG+EG CE D
Sbjct: 23 LGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD 82
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
EC S+PC++ G+C D++ F C C + G C+
Sbjct: 83 ECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 638 KEIDECL--SNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQD 695
+++DEC +NPC + G+C + L F C C + Y G RCE + C PC A C D
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE-IDVNECVSNPCQNDATCLD 59
Query: 696 TKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATG 754
+I + C C PGY G CE+N DECAS PC ++G+C+D +N F C C TG
Sbjct: 60 -QIGEF-----QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 112
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 601 DIDECV--THNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRL 658
D+DEC + C++ +CI+ + + C+C G+ G CE +++EC+SNPC N C D++
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 659 AGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSR 718
F C C Y G CE + CA PC C D KI+ + C+CP G+ G
Sbjct: 62 GEFQCICMPGYEGVHCE-VNTDECASSPCLHNGRCLD-KINEF-----QCECPTGFTGHL 114
Query: 719 CE 720
C+
Sbjct: 115 CQ 116
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 813 ILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF-PDPCKDEP 871
+ GYTG CEID+NEC S+ C N+ C++Q G+++C C G C D C P
Sbjct: 31 LQGYTGPRCEIDVNEC--VSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP 88
Query: 872 CQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C + G C + +++C+C G+TG C
Sbjct: 89 CLHNGRCLD---KINEFQCECPTGFTGHLC 115
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D + + C C GY C V+ DEC + C + RC+D + + CEC G+ G LC+
Sbjct: 59 DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQNGGTCHEDC 882
D++EC L ++ C + G+CIN G ++C C G C + C PCQN TC +
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD-- 59
Query: 883 RHQADYKCDCLPGWTGKNC 901
+++C C+PG+ G +C
Sbjct: 60 -QIGEFQCICMPGYEGVHC 77
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 722 NIDECASG--PCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLG 779
++DEC+ G PC+++G+CI+ + +F C C TG E+ +
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRC----EIDVN------------- 44
Query: 780 YTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNG 839
EC S L G Q + GY G CE++ +EC +S C +NG
Sbjct: 45 --------ECVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEVNTDEC--ASSPCLHNG 93
Query: 840 ECINQPGDYKCACQFDTCGYLC 861
C+++ +++C C G+LC
Sbjct: 94 RCLDKINEFQCECPTGFTGHLC 115
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 641 DECLSNPCMNGGQCEDRLA--GFVCNCSEEYVGERCESLRQIS-----------CADQPC 687
D C NPC NGG C LA F C C + + C S+ +++ C PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 688 YFGAVCQ-------DTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDD 740
+ G C+ DT I G +C CP G+ G C+ NI+EC PCKN G C D
Sbjct: 61 HNGGTCEISEAYRGDTFI------GYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDL 114
Query: 741 VNAFICNCTNTATG 754
V + C C G
Sbjct: 115 VANYSCECPGEFMG 128
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 19/111 (17%)
Query: 584 SYACKCPAGYSSETCA----VDIDE--------CVTHNCQNGARCI-------DGVARYS 624
S++C+CP G++ C+ V DE C + C NG C D Y
Sbjct: 22 SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV 81
Query: 625 CECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
C+C G+ G C+ I+EC PC NGG C D +A + C C E++G C+
Sbjct: 82 CKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 28/139 (20%)
Query: 603 DECVTHNCQNGARCIDGVA--RYSCECTPGWEGALCEKEID------------ECLSNPC 648
D C + C+NG C+ G+A +SCEC G+ C ++ C NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 649 MNGGQCE-------DRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPY 701
NGG CE D G+VC C + G C+ C +PC G +C D ++ Y
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNIN-ECEVEPCKNGGICTDL-VANY 118
Query: 702 FPQGPICDCPPGYRGSRCE 720
C+CP + G C+
Sbjct: 119 -----SCECPGEFMGRNCQ 132
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D Y CKCP G++ C +I+EC C+NG C D VA YSCEC + G C+
Sbjct: 75 DTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQY 261
GG CTDL ++SC C F+G CQY
Sbjct: 108 GGICTDLVANYSCECPGEFMGRNCQY 133
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 15/56 (26%)
Query: 858 GYLCNFP------------DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
GY+C P + C+ EPC+NGG C + A+Y C+C + G+NC
Sbjct: 79 GYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTD---LVANYSCECPGEFMGRNC 131
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 68/145 (46%), Gaps = 28/145 (19%)
Query: 610 CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEY 669
C+NG C + R CEC G+ G CEK + + CMNGG C GF C C +
Sbjct: 155 CRNGGFCNE---RRICECPDGFHGPHCEKAL---CTPRCMNGGLC--VTPGF-CICPPGF 205
Query: 670 VGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASG 729
G C+ + +C+ C+ G C ++P C CPPG G +CEI+ +C
Sbjct: 206 YGVNCD---KANCSTT-CFNGGTC-------FYPGK--CICPPGLEGEQCEIS--KCPQ- 249
Query: 730 PCKNSGQCIDDVNAFICNCTNTATG 754
PC+N G+CI C C+ G
Sbjct: 250 PCRNGGKCIGKSK---CKCSKGYQG 271
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSN 646
C+CP G+ C + T C NG C V C C PG+ G C+K S
Sbjct: 167 CECPDGFHGPHCEKAL---CTPRCMNGGLC---VTPGFCICPPGFYGVNCDKAN---CST 217
Query: 647 PCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGP 706
C NGG C C C GE+CE IS QPC G C
Sbjct: 218 TCFNGGTC---FYPGKCICPPGLEGEQCE----ISKCPQPCRNGGKCIGKSK-------- 262
Query: 707 ICDCPPGYRGSRCEINIDE---CASGPCK--NSGQCIDDVNAFICN 747
C C GY+G C + E A G C N QC + + CN
Sbjct: 263 -CKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCN 307
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSN 646
C CP G E C +I +C C+NG +CI + C+C+ G++G LC K + E
Sbjct: 231 CICPPGLEGEQC--EISKC-PQPCRNGGKCI---GKSKCKCSKGYQGDLCSKPVCE---P 281
Query: 647 PCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQIS 681
C G C + C C E + G C + S
Sbjct: 282 GCGAHGTCHEPNK---CQCQEGWHGRHCNKRYEAS 313
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN 874
G GE CEI C N G+CI G KC C G LC+ P + C
Sbjct: 236 GLEGEQCEIS-----KCPQPCRNGGKCI---GKSKCKCSKGYQGDLCS--KPVCEPGCGA 285
Query: 875 GGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
GTCHE KC C GW G++C +
Sbjct: 286 HGTCHEP------NKCQCQEGWHGRHCNK 308
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 14/80 (17%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQ--FDTCGYL----CNFPDPCKDEP--CQNG 875
DI+EC +S D+CG G+C+N PGD++C C +++ G++ C D C+ +P C+ G
Sbjct: 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYES-GFMMMKNCMDIDECQRDPLLCR-G 58
Query: 876 GTCHEDCRHQADYKCDCLPG 895
G CH + Y+C+C PG
Sbjct: 59 GVCH---NTEGSYRCECPPG 75
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D++EC+++ CQN A C+D + + C C PG+EG CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 639 EIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
+++EC+SNPC N C D++ F C C Y G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 722 NIDECASGPCKNSGQCIDDVNAFICNC 748
+++EC S PC+N C+D + F C C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCIC 27
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVAR--YSCECTPGWEGALCEKEIDECL 644
C+C G+ C D+C+ H C+ G+ + C C W G LC+K+++ C
Sbjct: 85 CRCQYGWQGLYC----DKCIPH-----PGCVHGICNEPWQCLCETNWGGQLCDKDLNYCG 135
Query: 645 SN-PCMNGGQCEDRLA-GFVCNCSEEYVGERCE 675
++ PC+NGG C + + C+C E Y G CE
Sbjct: 136 THQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 625 CECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCAD 684
C C GW+G C D+C+ +P G C + + C C + G+ C+
Sbjct: 85 CRCQYGWQGLYC----DKCIPHPGCVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTH 137
Query: 685 QPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEI 721
QPC G C +T Y C CP GY G CEI
Sbjct: 138 QPCLNGGTCSNTGPDKY-----QCSCPEGYSGPNCEI 169
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 585 YACKCPAGYSSETCAVDIDECVTHN-CQNGARCID-GVARYSCECTPGWEGALCE 637
+ C C + + C D++ C TH C NG C + G +Y C C G+ G CE
Sbjct: 114 WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCE----D 656
D D+C T CQN +C DG+ Y+C C G+EG CE + S ++ G C+ +
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHE 57
Query: 657 RLAGFVCNCSEEYV 670
VC+C+ Y
Sbjct: 58 EQNSVVCSCARGYT 71
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C + +Y C CL G+ GKNC
Sbjct: 3 DQCETSPCQNQGKCKD---GLGEYTCTCLEGFEGKNC 36
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
D+C + PC+N G+C D + + C C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTC 27
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCE----D 656
D D+C T CQN +C DG+ Y+C C G+EG CE + S ++ G C+ +
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHE 59
Query: 657 RLAGFVCNCSEEYV 670
A VC+C+ Y
Sbjct: 60 EQASVVCSCARGYT 73
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCA 683
K+ D+C ++PC N G+C+D L + C C E + G+ CE + C+
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 47
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C + +Y C CL G+ GKNC
Sbjct: 5 DQCETSPCQNQGKCKD---GLGEYTCTCLEGFEGKNC 38
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
D+C + PC+N G+C D + + C C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTC 29
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 43/152 (28%)
Query: 639 EIDECLSNPCMNGGQCEDRLAGFVCNCSEE---------------------YVGERCE-- 675
+IDEC S+PC+N G C++ F+C CS E + RCE
Sbjct: 3 DIDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEIN 61
Query: 676 ----SLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGY---RGSRCEINIDECAS 728
+L+ C+ +G+ C ++ P C GY +G++CE +IDEC
Sbjct: 62 INGATLKSQCCSSLGAAWGSPCTLCQVDPI--------CGKGYSRIKGTQCE-DIDECEV 112
Query: 729 GP--CKNSGQCIDDVNAFICNCTNTATGASMG 758
P CKN G C++ +F C C + T + G
Sbjct: 113 FPGVCKN-GLCVNTRGSFKCQCPSGMTLDATG 143
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 68/159 (42%), Gaps = 34/159 (21%)
Query: 722 NIDECASGPCKNSGQCIDDVNAFICNCTNTAT--GASMGCLGEVRLGDLLLPYFTWEQL- 778
+IDEC S PC N G C + +FIC C++ +T C+ ++ W+ +
Sbjct: 3 DIDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIK-------GTCWQTVI 54
Query: 779 -GYTD------TLSCPECFSLDSGPGGPGLADSGPGVQTTPILG-----YTGEMCEIDIN 826
G + TL C SL + G P Q PI G G CE DI+
Sbjct: 55 DGRCEININGATLKSQCCSSLGAAWGSPCTL-----CQVDPICGKGYSRIKGTQCE-DID 108
Query: 827 ECELSSDMCGNNGECINQPGDYKCAC----QFDTCGYLC 861
ECE+ +C NG C+N G +KC C D G +C
Sbjct: 109 ECEVFPGVC-KNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
D+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG 660
D D+C + CQNG C D + Y C C P +EG CE D+ L NGG CE +
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSD 104
Query: 661 FV-----CNCSEEY 669
C C E Y
Sbjct: 105 HTGTKRSCRCHEGY 118
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 48 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 81
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTW 775
D+CAS PC+N G C D + ++IC C G + E D L+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCS 103
Query: 776 EQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
+ G + C E +SL LAD GV TP + Y
Sbjct: 104 DHTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 133
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCE----D 656
D D+C T CQN +C DG+ Y+C C G+EG CE + S ++ G C+ +
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHE 97
Query: 657 RLAGFVCNCSEEYV 670
VC+C+ Y
Sbjct: 98 EQNSVVCSCARGYT 111
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCA 683
K+ D+C ++PC N G+C+D L + C C E + G+ CE + C+
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 85
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C + +Y C CL G+ GKNC
Sbjct: 43 DQCETSPCQNQGKCKD---GLGEYTCTCLEGFEGKNC 76
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
D+C + PC+N G+C D + + C C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTC 67
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
D+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG 660
D D+C + CQNG C D + Y C C P +EG CE D+ L NGG CE +
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSD 104
Query: 661 FV-----CNCSEEY 669
C C E Y
Sbjct: 105 HTGTKRSCRCHEGY 118
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 48 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 81
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTW 775
D+CAS PC+N G C D + ++IC C G + E D L+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCS 103
Query: 776 EQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
+ G + C E +SL LAD GV TP + Y
Sbjct: 104 DHTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 133
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
D+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG 660
D D+C + CQNG C D + Y C C P +EG CE D+ L NGG CE +
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSD 104
Query: 661 FV-----CNCSEEY 669
C C E Y
Sbjct: 105 HTGTKRSCRCHEGY 118
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 48 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 81
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTW 775
D+CAS PC+N G C D + ++IC C G + E D L+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCS 103
Query: 776 EQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
+ G + C E +SL LAD GV TP + Y
Sbjct: 104 DHTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 133
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
D+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGG 652
D D+C + CQNG C D + Y C C P +EG CE D+ L NGG
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 48 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 81
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTW 775
D+CAS PC+N G C D + ++IC C G + E D L+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCS 103
Query: 776 EQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
+ G + C E +SL LAD GV TP + Y
Sbjct: 104 DHTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 133
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
D+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 53
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG 660
D D+C + CQNG C D + Y C C P +EG CE D+ L NGG CE +
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSD 63
Query: 661 FV-----CNCSEEY 669
C C E Y
Sbjct: 64 HTGTKRSCRCHEGY 77
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 7 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 40
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTW 775
D+CAS PC+N G C D + ++IC C G + E D L+ +
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCS 62
Query: 776 EQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
+ G + C E +SL LAD GV TP + Y
Sbjct: 63 DHTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 92
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR 678
D+C S+PC NGG C+D+L ++C C + G CE+ +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHK 41
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C + CQNG C D + Y C C P +EG CE
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 4 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 37
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
D+CAS PC+N G C D + ++IC C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFC 28
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCE----D 656
D D+C T CQN +C DG+ Y+C C G+EG CE + S ++ G C+ +
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFCHE 102
Query: 657 RLAGFVCNCSEEYV 670
VC+C+ Y
Sbjct: 103 EQNSVVCSCARGYT 116
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCA 683
K+ D+C ++PC N G+C+D L + C C E + G+ CE + C+
Sbjct: 45 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 90
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVPEYLPS 910
D C+ PCQN G C + +Y C CL G+ GKNC L S
Sbjct: 48 DQCETSPCQNQGKCKDG---LGEYTCTCLEGFEGKNCELFTRKLCS 90
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
D+C + PC+N G+C D + + C C
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTC 72
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR 678
D+C S+PC NGG C+D+L ++C C + G CE+ +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHK 41
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDE 642
D D+C + CQNG C D + Y C C P +EG CE D+
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 4 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 37
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
D+CAS PC+N G C D + ++IC C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFC 28
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
D+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 47
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 603 DECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFV 662
D+C + CQNG C D + Y C C P +EG CE D+ L NGG CE +
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSDHT 59
Query: 663 -----CNCSEEY 669
C C E Y
Sbjct: 60 GTKRSCRCHEGY 71
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PCQNGG+C + Y C CLP + G+NC
Sbjct: 1 DQCASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 34
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTW 775
D+CAS PC+N G C D + ++IC C G + E D L+ +
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCS 56
Query: 776 EQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
+ G + C E +SL LAD GV TP + Y
Sbjct: 57 DHTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 86
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C T CQN +C DG+ Y+C C G+EG CE
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCA 683
K+ D+C ++PC N G+C+D L + C C E + G+ CE + C+
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 85
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C + +Y C CL G+ GKNC
Sbjct: 43 DQCETSPCQNQGKCKD---GLGEYTCTCLEGFEGKNC 76
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNCTNTATGAS 756
D+C + PC+N G+C D + + C C G +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN 75
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 643 CLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
C+S PC++ G C+D + G+ C CS Y G CE
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE 40
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQ--CEDRLAGFV 662
C++ C + C D + Y+C C+PG+EG+ CE +EC +G Q C +
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPER-TDGCQHFCLPGQESYT 66
Query: 663 CNCSEEY 669
C+C++ Y
Sbjct: 67 CSCAQGY 73
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDEC---VTHNCQNGARCIDGVARYSCECTPGWE 632
D + Y C C GY C + +EC T CQ+ C+ G Y+C C G+
Sbjct: 21 DSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYR 74
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
PC +PC + G+C + Y C C PG+ G NC
Sbjct: 7 PCISQPCLHNGSCQDSI---WGYTCTCSPGYEGSNC 39
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C T CQN +C DG+ Y+C C G+EG CE
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCA 683
K+ D+C ++PC N G+C+D L + C C E + G+ CE + C+
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 47
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C + +Y C CL G+ GKNC
Sbjct: 5 DQCETSPCQNQGKCKD---GLGEYTCTCLEGFEGKNC 38
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
D+C + PC+N G+C D + + C C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTC 29
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C T CQN +C DG+ Y+C C G+EG CE
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 38
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCA 683
K+ D+C ++PC N G+C+D L + C C E + G+ CE + C+
Sbjct: 1 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 46
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C + +Y C CL G+ GKNC
Sbjct: 4 DQCETSPCQNQGKCKD---GLGEYTCTCLEGFEGKNC 37
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C T CQN +C DG+ Y+C C G+EG CE
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 37
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C + +Y C CL G+ GKNC
Sbjct: 3 DQCETSPCQNQGKCKD---GLGEYTCTCLEGFEGKNC 36
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 636 CEKEIDE-CLSNPCMNGGQCEDRLAGFVCNCS-EEYVGERCE 675
C +E + CLSNPC N G C D +VC+CS Y+G CE
Sbjct: 389 CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 26/185 (14%)
Query: 475 ETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVGPGFDFQR-------- 526
+ + A EM G L++ L S K+ DG + + DFQR
Sbjct: 254 KVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHV------DFQRDGRSGTIS 307
Query: 527 ---IDHPFTK--KHVIVCVLNAHQLSGISDQADLVRCTSEAYLNLIIY-----ISWLLSP 576
+ P+T + I+ + + L G+ + + +E + L+ Y I L
Sbjct: 308 VNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFID 367
Query: 577 HDSDPLTSYA-CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECT-PGWEGA 634
S + A + AG C+++ C+N C DG RY C+C+ G+ G
Sbjct: 368 GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 427
Query: 635 LCEKE 639
CE+E
Sbjct: 428 SCERE 432
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 726 CASGPCKNSGQCIDDVNAFICNCTNTA 752
C S PCKN+G C D N ++C+C+ T
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTG 423
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 99 ISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPES 158
IS RT + G I + G R + + + A EM G L++ L S
Sbjct: 221 ISFDFRTTEPNGLILFSHGK-PRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 279
Query: 159 YNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGIPE 215
K+ DG + + R+ + +N + ILD+ LYLGG+PE
Sbjct: 280 IKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPE 337
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNC 901
PC PC+N G C + Y CDC G+ G++C
Sbjct: 396 PCLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSC 429
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 636 CEKEIDE-CLSNPCMNGGQCEDRLAGFVCNCS-EEYVGERCE 675
C +E + CLSNPC N G C D +VC+CS Y+G CE
Sbjct: 614 CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 26/185 (14%)
Query: 475 ETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVGPGFDFQR-------- 526
+ + A EM G L++ L S K+ DG + + DFQR
Sbjct: 479 KVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHV------DFQRDGRSGTIS 532
Query: 527 ---IDHPFTK--KHVIVCVLNAHQLSGISDQADLVRCTSEAYLNLIIY-----ISWLLSP 576
+ P+T + I+ + + L G+ + + +E + L+ Y I L
Sbjct: 533 VNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFID 592
Query: 577 HDSDPLTSYA-CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECT-PGWEGA 634
S + A + AG C+++ C+N C DG RY C+C+ G+ G
Sbjct: 593 GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Query: 635 LCEKE 639
CE+E
Sbjct: 653 SCERE 657
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 726 CASGPCKNSGQCIDDVNAFICNCTNTA 752
C S PCKN+G C D N ++C+C+ T
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTG 648
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 99 ISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPES 158
IS RT + G I + G R + + + A EM G L++ L S
Sbjct: 446 ISFDFRTTEPNGLILFSHGK-PRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 504
Query: 159 YNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGIPE 215
K+ DG + + R+ + +N + ILD+ LYLGG+PE
Sbjct: 505 IKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPE 562
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNC 901
PC PC+N G C + Y CDC G+ G++C
Sbjct: 621 PCLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSC 654
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 636 CEKEIDE-CLSNPCMNGGQCEDRLAGFVCNCS-EEYVGERCE 675
C +E + CLSNPC N G C D +VC+CS Y+G CE
Sbjct: 614 CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 26/185 (14%)
Query: 475 ETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVGPGFDFQR-------- 526
+ + A EM G L++ L S K+ DG + + DFQR
Sbjct: 479 KVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHV------DFQRDGRSGTIS 532
Query: 527 ---IDHPFTK--KHVIVCVLNAHQLSGISDQADLVRCTSEAYLNLIIY-----ISWLLSP 576
+ P+T + I+ + + L G+ + + +E + L+ Y I L
Sbjct: 533 VNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFID 592
Query: 577 HDSDPLTSYA-CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECT-PGWEGA 634
S + A + AG C+++ C+N C DG RY C+C+ G+ G
Sbjct: 593 GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Query: 635 LCEKE 639
CE+E
Sbjct: 653 SCERE 657
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 726 CASGPCKNSGQCIDDVNAFICNCTNTA 752
C S PCKN+G C D N ++C+C+ T
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTG 648
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 99 ISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPES 158
IS RT + G I + G R + + + A EM G L++ L S
Sbjct: 446 ISFDFRTTEPNGLILFSHGK-PRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 504
Query: 159 YNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGIPE 215
K+ DG + + R+ + +N + ILD+ LYLGG+PE
Sbjct: 505 IKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPE 562
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNC 901
PC PC+N G C + Y CDC G+ G++C
Sbjct: 621 PCLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSC 654
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 599 AVDIDECVTHNCQNGARCIDGVARYSCECTPGW--EGALCEKEIDEC-LSNPCMNGGQCE 655
AVD+DEC + +CI+ Y CEC G+ G C + DEC + NPC N G C+
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGN-GTCK 59
Query: 656 DRLAGFVCNCSEEY 669
+ + GF C C E +
Sbjct: 60 NVIGGFECTCEEGF 73
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 584 SYACKCPAGY--SSETCAVDIDECVTHN-CQNGARCIDGVARYSCECTPGWE 632
SY C+CP GY + C VD DEC N C NG C + + + C C G+E
Sbjct: 25 SYRCECPFGYILAGNEC-VDTDECSVGNPCGNGT-CKNVIGGFECTCEEGFE 74
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 16/63 (25%)
Query: 823 IDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYL-----------CNFPDPCKDEP 871
+D++EC+ D+C +G+CIN G Y+C C F GY+ C+ +PC +
Sbjct: 3 VDMDECK-EPDVC-KHGQCINTDGSYRCECPF---GYILAGNECVDTDECSVGNPCGNGT 57
Query: 872 CQN 874
C+N
Sbjct: 58 CKN 60
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 17/80 (21%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE-----SLRQISCADQPCYFGAVCQD 695
D+C NPC+NGG C+D + + C C + G+ CE +++ C Q C GA D
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCK-QFCKTGA---D 104
Query: 696 TKISPYFPQGPICDCPPGYR 715
+K+ +C C GYR
Sbjct: 105 SKV--------LCSCTTGYR 116
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 600 VDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
VD D+C + C NG C D + Y C C G+EG CE
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE 83
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PC NGG C +D Y+C C G+ GKNC
Sbjct: 49 DQCEPNPCLNGGLCKDDINS---YECWCQVGFEGKNC 82
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 721 INIDECASGPCKNSGQCIDDVNAFICNC 748
++ D+C PC N G C DD+N++ C C
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWC 73
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
K+ D+C +PC+N G C+D + + C C+E + G+ CE
Sbjct: 1 KDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C H C N C DG+ Y+C C G+EG CE
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PC N G C + DY C C G+ GKNC
Sbjct: 4 DQCEGHPCLNQGHCKDG---IGDYTCTCAEGFEGKNC 37
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 46
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 604 ECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFV- 662
+C + CQNG C D + Y C C P +EG CE D+ L NGG CE +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSDHTG 59
Query: 663 ----CNCSEEY 669
C C E Y
Sbjct: 60 TKRSCRCHEGY 70
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 867 CKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C PCQNGG+C + Y C CLP + G+NC
Sbjct: 2 CASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 33
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 725 ECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTWE 776
+CAS PC+N G C D + ++IC C G + E D L+ + +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCSD 56
Query: 777 QLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
G + C E +SL LAD GV TP + Y
Sbjct: 57 HTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 85
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEI 640
C + C +G CIDG+ +SC+C GWEG C++E+
Sbjct: 11 CASLCCGHGT-CIDGIGSFSCDCRSGWEGRFCQREV 45
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 584 SYACKCPAGYS-----------SETCAVDIDECVT--HNCQNGARCIDGVARYSCECTPG 630
SY C C GY SE D+DEC + H C + C + V YSC C PG
Sbjct: 67 SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPG 126
Query: 631 WE 632
W+
Sbjct: 127 WK 128
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 576 PHDSDPLTSYACKCPAGYSS---------ETCAVDIDECVTHN---CQNGARCIDGVARY 623
P DS + + AC+C G+SS ETC DI+EC T + C + C + Y
Sbjct: 10 PQDSSCVNATACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSY 68
Query: 624 SCECTPGWE---GALCEK--------EIDECLS--NPCMNGGQCEDRLAGFVCNC 665
C C+PG+E GA K ++DEC S + C + C + + + C C
Sbjct: 69 DCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRC 123
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 799 PGLADSGPGVQTTPILGYTGEMCEIDINECE-LSSDMCGNNGECINQPGDYKCACQ--FD 855
PG + S + TTP+ E C+ DINEC LS CG +C N G Y C C ++
Sbjct: 25 PGFS-SFSEIITTPM-----ETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYE 77
Query: 856 TCGYLCNFPDPCKDEPCQNGGTCHEDCRHQAD-----------YKCDCLPGW 896
F + + CQ+ C +HQ D Y C C PGW
Sbjct: 78 PVSGAKTFKNE-SENTCQDVDECSSG-QHQCDSSTVCFNTVGSYSCRCRPGW 127
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLR--QISCADQ 685
+C S+PC NGG C+D+L ++C C + G CE+ + Q+ C ++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 46
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 604 ECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFV- 662
+C + CQNG C D + Y C C P +EG CE D+ L NGG CE +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSDHTG 59
Query: 663 ----CNCSEEY 669
C C E Y
Sbjct: 60 TKRSCRCHEGY 70
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 867 CKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C PCQNGG+C + Y C CLP + G+NC
Sbjct: 2 CASSPCQNGGSCKD---QLQSYICFCLPAFEGRNC 33
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 725 ECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLL--------PYFTWE 776
+CAS PC+N G C D + ++IC C G + E D L+ + +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC----ETHKDDQLICVNENGGCEQYCSD 56
Query: 777 QLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
G + C E +SL LAD GV TP + Y
Sbjct: 57 HTGTKRSCRCHEGYSL--------LAD---GVSCTPTVEY 85
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C T CQN +C G+ Y+C C G+EG CE
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCE 38
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCA 683
K+ D+C ++PC N G+C+ L + C C E + G+ CE + C+
Sbjct: 1 KDGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCS 46
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PCQN G C +Y C CL G+ GKNC
Sbjct: 4 DQCETSPCQNQGKCK---XGLGEYTCTCLEGFEGKNC 37
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
+PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 60
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
+PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 43
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
+PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 43
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
+PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 43
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
+PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 43
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
K+ D+C +PC+N G C+ + + C C+E + G+ CE
Sbjct: 45 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C H C N C G+ Y+C C G+EG CE
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PC N G C DY C C G+ GKNC
Sbjct: 48 DQCEGHPCLNQGHCKXG---IGDYTCTCAEGFEGKNC 81
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
D+C SNPC+NGG C+D + + C C + G+ CE
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 600 VDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
VD D+C ++ C NG C D + Y C C G+EG CE
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 721 INIDECASGPCKNSGQCIDDVNAFICNC 748
++ D+C S PC N G C DD+N++ C C
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWC 28
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PC NGG+C +D Y+C C G+ GKNC
Sbjct: 4 DQCESNPCLNGGSCKDDINS---YECWCPFGFEGKNC 37
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
+PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 43
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 26 PCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 66
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE-----SLRQISCADQPCYFGAVCQD 695
D+C NPC+NGG C+ + + C C + G+ CE +++ C Q C GA D
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRC-KQFCKTGA---D 104
Query: 696 TKISPYFPQGPICDCPPGYR 715
+K+ +C C GYR
Sbjct: 105 SKV--------LCSCTTGYR 116
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 600 VDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
VD D+C + C NG C + Y C C G+EG CE
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCE 83
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PC NGG C D Y+C C G+ GKNC
Sbjct: 49 DQCEPNPCLNGGLCKXD---INSYECWCQVGFEGKNC 82
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 9 PCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 49
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 7 PCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 47
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 7 PCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 47
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 8 PCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 48
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTEVPEYL 908
PC PCQN G C Q YKCDC G+ G+NCT PE+L
Sbjct: 8 PCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT-TPEFL 48
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
K+ D+C +PC+N G C+ + + C C+E + G+ CE
Sbjct: 1 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D D+C H C N C G+ Y+C C G+EG CE
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEI 640
C + C +G CI G+ +SC+C GWEG C++E+
Sbjct: 18 CASLCCGHGT-CIXGIGSFSCDCRSGWEGRFCQREV 52
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 872 CQNGGTCH--EDCRHQADYKCDCLPGWTGKNCTE 903
C NGG C +D + + Y C C PG+TG CTE
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 49
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 610 CQNGARC-----IDGVARYSCECTPGWEGALCEKEI 640
C NG C + +RY C+C PG+ GA C + +
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 51
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 872 CQNGGTCH--EDCRHQADYKCDCLPGWTGKNCTE 903
C NGG C +D + + Y C C PG+TG CTE
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 610 CQNGARC-----IDGVARYSCECTPGWEGALCEKEI 640
C NG C + +RY C+C PG+ GA C + +
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 624 SCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESL 677
C C+PGWEG C E C +GG C + C C + Y+G +CE +
Sbjct: 409 KCCCSPGWEGDFCRTAKCE---PACRHGGVC---VRPNKCLCKKGYLGPQCEQV 456
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 624 SCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESL 677
C C+PGWEG C E C +GG C + C C + Y+G +CE +
Sbjct: 409 KCCCSPGWEGDFCRTAKCE---PACRHGGVC---VRPNKCLCKKGYLGPQCEQV 456
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 624 SCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESL 677
C C+PGWEG C E C +GG C + C C + Y+G +CE +
Sbjct: 409 KCCCSPGWEGDFCRTAKCE---PACRHGGVC---VRPNKCLCKKGYLGPQCEQV 456
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 624 SCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
C C+PGWEG C E C +GG C + C C + Y+G +CE
Sbjct: 430 KCCCSPGWEGDFCRTAKCE---PACRHGGVC---VRPNKCLCKKGYLGPQCE 475
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 624 SCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
C C+PGWEG C E C +GG C + C C + Y+G +CE
Sbjct: 430 KCCCSPGWEGDFCRTAKCE---PACRHGGVC---VRPNKCLCKKGYLGPQCE 475
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 673 RCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEIN 722
+C S+ SC++ C+ G CQ F +C CP G+ G CEI+
Sbjct: 42 QCHSVPVKSCSEPRCFNGGTCQQALYFSDF----VCQCPEGFAGKSCEID 87
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 640 IDECLSNPCMNGGQCEDRL--AGFVCNCSEEYVGERCE 675
+ C C NGG C+ L + FVC C E + G+ CE
Sbjct: 48 VKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 39/110 (35%), Gaps = 29/110 (26%)
Query: 587 CKCPAGYSSETCAVDIDECVTHN--------------CQNGARCIDGVARYSCECTPGWE 632
C CP G+ TC C H C++ C+ Y C C GW+
Sbjct: 218 CICPPGFMGRTCE---KACELHTFGRTCKERCSGQEGCKSYVFCLPD--PYGCSCATGWK 272
Query: 633 GALCEKEIDECLSNP-------CMNGGQCEDRLAGFVCNCSEEYVGERCE 675
G C + P C NG C DR G C CS + G +CE
Sbjct: 273 GLQCNEACHPGFYGPDCKLRCSCNNGEMC-DRFQG--CLCSPGWQGLQCE 319
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 585 YACKCPAGYS----SETCAVDI---DECVTHNCQNGARCIDGVARYS-CECTPGWEGALC 636
Y C C G+ +E C D + +C NG C R+ C C+PGW+G C
Sbjct: 263 YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC----DRFQGCLCSPGWQGLQC 318
Query: 637 EKE 639
E+E
Sbjct: 319 ERE 321
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 36/131 (27%)
Query: 610 CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG--------- 660
C N C + C C PG+ G CEK + G C++R +G
Sbjct: 205 CMNNGVCHEDTG--ECICPPGFMGRTCEKACELHTF-----GRTCKERCSGQEGCKSYVF 257
Query: 661 -----FVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICD------ 709
+ C+C+ + G +C ++ C+ G D K+ G +CD
Sbjct: 258 CLPDPYGCSCATGWKGLQC---------NEACHPGFYGPDCKLRCSCNNGEMCDRFQGCL 308
Query: 710 CPPGYRGSRCE 720
C PG++G +CE
Sbjct: 309 CSPGWQGLQCE 319
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 2 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 41
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 2 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 41
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 3 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 42
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 3 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 42
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 3 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 42
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 2 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 41
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID 641
C +C C++ + Y+C+C PG+ G CE+ ++
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 34 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 73
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 34 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 73
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEK 638
C +C C++ + Y+C+C PG+ G CE+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 14 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 53
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 10 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 49
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCL-PGWTGKNCTEVPE 906
+PC PCQ+ G C R D Y+CDC G++G NCT +PE
Sbjct: 10 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCT-IPE 49
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 612 NGARCIDGVARYSC---ECTPGWEGALCE--------KEIDECLSNP----CMNGGQCE- 655
N RC +G + C C PGW G+ CE + DEC C G+C
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503
Query: 656 ----------DRLAGFVCNCSE----EYVGERCESLRQISCADQPC 687
++ G C C + Y GE C Q SC D C
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 612 NGARCIDGVARYSC---ECTPGWEGALCE--------KEIDECLSNP----CMNGGQCE- 655
N RC +G + C C PGW G+ CE + DEC C G+C
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503
Query: 656 ----------DRLAGFVCNCSE----EYVGERCESLRQISCADQPC 687
++ G C C + Y GE C Q SC D C
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 612 NGARCIDGVARYSC---ECTPGWEGALCE--------KEIDECLSNP----CMNGGQCE- 655
N RC +G + C C PGW G+ CE + DEC C G+C
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503
Query: 656 ----------DRLAGFVCNCSE----EYVGERCESLRQISCADQPC 687
++ G C C + Y GE C Q SC D C
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 612 NGARCIDGVARYSC---ECTPGWEGALCE--------KEIDECLSNP----CMNGGQCE- 655
N RC +G + C C PGW G+ CE + DEC C G+C
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503
Query: 656 ----------DRLAGFVCNCSE----EYVGERCESLRQISCADQPC 687
++ G C C + Y GE C Q SC D C
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 612 NGARCIDGVARYSC---ECTPGWEGALCE--------KEIDECLSNP----CMNGGQCE- 655
N RC +G + C C PGW G+ CE + DEC C G+C
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503
Query: 656 ----------DRLAGFVCNCSE----EYVGERCESLRQISCADQPC 687
++ G C C + Y GE C Q SC D C
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 641 DECLSNPCMNGGQCEDRLAG-FVCN-CSEEYVGE--RCESLRQISCADQPCY-FGAVCQD 695
D CLSNPC G QC G + C C ++G CE L + + C+ V +
Sbjct: 1 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRC 60
Query: 696 TKISPYFPQGPICDCPPGYRGSR 718
P F P CPP YRG++
Sbjct: 61 VNTQPGFHCLP---CPPRYRGNQ 80
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 641 DECLSNPCMNGGQCEDRLAG-FVCN-CSEEYVGE--RCESLRQISCADQPCY-FGAVCQD 695
D CLSNPC G QC G + C C ++G CE L + + C+ V +
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRC 63
Query: 696 TKISPYFPQGPICDCPPGYRGSR 718
P F P CPP YRG++
Sbjct: 64 VNTQPGFHCLP---CPPRYRGNQ 83
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 568 IYISWLLSPHDSDPLTSYACKCPAGYSSET--CAVDIDEC--------VTHNCQNGARCI 617
++ + P D DP T +C+CP GY + DIDEC V HN CI
Sbjct: 44 LFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECI 103
Query: 618 DG 619
G
Sbjct: 104 CG 105
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 568 IYISWLLSPHDSDPLTSYACKCPAGYSSET--CAVDIDEC--------VTHNCQNGARCI 617
++ + P D DP T +C+CP GY + DIDEC V HN CI
Sbjct: 44 MFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECI 103
Query: 618 DG 619
G
Sbjct: 104 CG 105
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 648 CMNGGQCE--DRLAGFVCNCSEEYVGERCE 675
C+NGG C + L + CNC Y G+RCE
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCE 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,467,977
Number of Sequences: 62578
Number of extensions: 1227999
Number of successful extensions: 2811
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 2031
Number of HSP's gapped (non-prelim): 712
length of query: 979
length of database: 14,973,337
effective HSP length: 108
effective length of query: 871
effective length of database: 8,214,913
effective search space: 7155189223
effective search space used: 7155189223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)