Query psy9685
Match_columns 979
No_of_seqs 600 out of 4621
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 16:58:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3514|consensus 100.0 7.5E-50 1.6E-54 448.0 29.9 475 71-638 26-660 (1591)
2 KOG3514|consensus 100.0 7.7E-46 1.7E-50 415.8 32.4 486 68-637 440-1054(1591)
3 KOG4289|consensus 100.0 6.1E-42 1.3E-46 391.8 38.0 274 76-393 1323-1664(2531)
4 KOG3516|consensus 100.0 6E-31 1.3E-35 303.7 33.1 258 78-383 185-463 (1306)
5 KOG3516|consensus 100.0 3E-29 6.4E-34 289.8 27.2 279 67-383 789-1111(1306)
6 KOG4289|consensus 100.0 4.2E-29 9.2E-34 287.2 28.2 383 229-676 1243-1754(2531)
7 KOG1219|consensus 100.0 8.6E-29 1.9E-33 293.4 30.6 129 229-383 3650-3780(4289)
8 KOG1219|consensus 99.9 6.1E-23 1.3E-27 244.5 24.1 95 582-676 3883-3978(4289)
9 PF00054 Laminin_G_1: Laminin 99.8 1.5E-18 3.3E-23 164.9 14.5 98 103-214 1-101 (131)
10 KOG1226|consensus 99.7 1.1E-17 2.4E-22 188.5 13.5 266 646-973 467-769 (783)
11 smart00282 LamG Laminin G doma 99.7 1.9E-16 4.2E-21 152.1 15.2 109 96-217 2-112 (135)
12 PF00054 Laminin_G_1: Laminin 99.7 3.1E-16 6.8E-21 149.0 14.8 78 300-391 1-101 (131)
13 cd00110 LamG Laminin G domain; 99.7 1.7E-15 3.6E-20 148.8 16.0 122 78-217 7-130 (151)
14 smart00282 LamG Laminin G doma 99.7 2.3E-15 5.1E-20 144.6 15.9 78 293-383 2-79 (135)
15 KOG1214|consensus 99.6 4.6E-13 9.9E-18 150.1 27.0 147 609-762 701-866 (1289)
16 PF02210 Laminin_G_2: Laminin 99.6 3.7E-14 8E-19 134.9 14.3 103 103-218 1-106 (128)
17 KOG1217|consensus 99.5 2.1E-13 4.5E-18 161.5 21.2 270 580-899 105-389 (487)
18 cd00110 LamG Laminin G domain; 99.5 1.6E-13 3.5E-18 134.7 16.1 78 291-382 19-96 (151)
19 PF02210 Laminin_G_2: Laminin 99.5 1.6E-13 3.4E-18 130.5 13.9 82 300-394 1-105 (128)
20 KOG0994|consensus 99.4 2.8E-12 6.1E-17 148.0 16.9 298 581-903 778-1147(1758)
21 KOG1217|consensus 99.4 1.9E-11 4.1E-16 144.7 22.1 249 643-905 92-356 (487)
22 KOG1225|consensus 99.3 2E-11 4.3E-16 137.3 14.3 76 661-757 234-309 (525)
23 KOG1214|consensus 99.2 2.5E-11 5.4E-16 136.5 11.2 155 683-862 698-864 (1289)
24 KOG1225|consensus 99.2 1.6E-10 3.5E-15 130.0 13.9 147 584-758 191-341 (525)
25 KOG1226|consensus 99.2 1.7E-10 3.7E-15 131.2 12.3 116 624-758 479-620 (783)
26 KOG0994|consensus 99.0 1.7E-09 3.8E-14 125.6 14.0 253 584-862 829-1146(1758)
27 KOG4260|consensus 98.9 1.6E-09 3.5E-14 107.5 7.0 159 710-897 132-304 (350)
28 KOG4260|consensus 98.9 1.7E-09 3.7E-14 107.3 6.1 117 627-754 132-269 (350)
29 KOG1836|consensus 98.8 1.2E-07 2.7E-12 120.7 17.6 112 784-904 886-1023(1705)
30 smart00210 TSPN Thrombospondin 98.4 2.7E-06 5.8E-11 85.9 13.0 130 68-214 29-164 (184)
31 smart00210 TSPN Thrombospondin 98.1 3.6E-05 7.8E-10 77.7 13.7 88 290-393 50-141 (184)
32 KOG1836|consensus 98.0 5.1E-05 1.1E-09 97.5 15.1 61 840-903 904-974 (1705)
33 PF13385 Laminin_G_3: Concanav 97.8 0.00013 2.7E-09 71.4 10.8 119 77-214 8-131 (157)
34 PF07645 EGF_CA: Calcium-bindi 97.8 9.1E-06 2E-10 59.7 1.7 34 824-857 1-34 (42)
35 PF07645 EGF_CA: Calcium-bindi 97.5 7.2E-05 1.6E-09 54.9 2.4 33 722-754 1-35 (42)
36 smart00179 EGF_CA Calcium-bind 97.4 0.00015 3.3E-09 52.4 3.6 37 825-862 2-39 (39)
37 PHA03099 epidermal growth fact 97.4 0.00028 6.1E-09 62.7 5.1 32 872-905 53-84 (139)
38 PF00008 EGF: EGF-like domain 97.3 0.00013 2.9E-09 49.8 2.1 30 726-755 1-31 (32)
39 PF00008 EGF: EGF-like domain 97.3 0.00019 4.1E-09 49.0 2.2 30 643-672 1-31 (32)
40 KOG3512|consensus 97.2 0.0019 4.2E-08 70.2 10.2 21 887-907 463-483 (592)
41 smart00179 EGF_CA Calcium-bind 97.2 0.00058 1.3E-08 49.2 4.2 36 722-757 1-38 (39)
42 PF06247 Plasmod_Pvs28: Plasmo 97.0 0.00019 4.1E-09 68.8 0.2 123 705-899 19-162 (197)
43 cd00054 EGF_CA Calcium-binding 96.9 0.0012 2.5E-08 47.2 3.5 37 825-862 2-38 (38)
44 cd00152 PTX Pentraxins are pla 96.8 0.021 4.5E-07 58.6 13.7 116 76-213 15-137 (201)
45 PF02973 Sialidase: Sialidase, 96.8 0.036 7.8E-07 55.1 14.1 108 95-214 33-154 (190)
46 PF06247 Plasmod_Pvs28: Plasmo 96.8 0.00061 1.3E-08 65.4 1.7 138 609-756 7-163 (197)
47 smart00159 PTX Pentraxin / C-r 96.7 0.027 5.8E-07 58.0 13.3 95 76-192 15-115 (206)
48 cd00054 EGF_CA Calcium-binding 96.7 0.0028 6E-08 45.2 4.2 35 723-757 2-37 (38)
49 KOG1218|consensus 96.6 0.041 8.9E-07 61.0 15.1 87 662-757 50-137 (316)
50 PF13385 Laminin_G_3: Concanav 96.5 0.042 9.1E-07 53.3 12.9 86 291-393 21-109 (157)
51 PF12947 EGF_3: EGF domain; I 96.4 0.00098 2.1E-08 46.7 0.6 31 829-859 2-32 (36)
52 PF07974 EGF_2: EGF-like domai 96.4 0.0038 8.1E-08 42.4 3.2 27 833-861 6-32 (32)
53 PF12947 EGF_3: EGF domain; I 96.4 0.0024 5.3E-08 44.7 2.2 30 729-758 6-35 (36)
54 PF00354 Pentaxin: Pentaxin fa 96.2 0.15 3.3E-06 51.8 15.3 116 76-212 9-130 (195)
55 cd00053 EGF Epidermal growth f 96.0 0.0073 1.6E-07 42.3 3.4 29 833-861 6-35 (36)
56 smart00181 EGF Epidermal growt 95.9 0.0093 2E-07 41.7 3.4 28 833-861 6-34 (35)
57 KOG1218|consensus 95.7 0.37 8.1E-06 53.3 17.3 45 705-751 161-206 (316)
58 cd00053 EGF Epidermal growth f 95.7 0.016 3.4E-07 40.5 4.0 28 728-755 5-32 (36)
59 PF12662 cEGF: Complement Clr- 95.7 0.0081 1.8E-07 37.6 2.0 20 847-866 1-24 (24)
60 KOG3509|consensus 95.6 0.3 6.5E-06 60.0 16.4 72 603-675 407-479 (964)
61 PF07974 EGF_2: EGF-like domai 95.6 0.018 3.8E-07 39.2 3.5 27 870-901 6-32 (32)
62 smart00181 EGF Epidermal growt 95.4 0.024 5.2E-07 39.6 4.0 28 726-754 2-30 (35)
63 PF14670 FXa_inhibition: Coagu 95.3 0.0089 1.9E-07 41.8 1.3 24 832-857 5-28 (36)
64 KOG3512|consensus 95.2 0.096 2.1E-06 57.5 9.6 52 705-758 370-428 (592)
65 PF12661 hEGF: Human growth fa 95.0 0.01 2.3E-07 31.3 0.8 13 889-901 1-13 (13)
66 PF12662 cEGF: Complement Clr- 94.7 0.027 5.9E-07 35.3 2.2 20 887-906 1-24 (24)
67 PF02973 Sialidase: Sialidase, 94.5 0.77 1.7E-05 45.8 13.0 84 291-389 32-125 (190)
68 KOG3509|consensus 94.2 0.2 4.2E-06 61.5 9.7 126 133-262 279-443 (964)
69 smart00159 PTX Pentraxin / C-r 94.2 0.69 1.5E-05 47.6 12.7 84 291-392 30-115 (206)
70 PF12661 hEGF: Human growth fa 93.9 0.019 4.2E-07 30.3 0.3 13 849-861 1-13 (13)
71 PF12955 DUF3844: Domain of un 93.8 0.12 2.6E-06 45.4 5.2 20 825-844 5-24 (103)
72 PTZ00382 Variant-specific surf 93.5 0.099 2.2E-06 46.0 4.2 11 892-902 42-54 (96)
73 smart00051 DSL delta serrate l 92.2 0.16 3.4E-06 40.9 3.3 47 808-861 17-63 (63)
74 PF15102 TMEM154: TMEM154 prot 92.1 0.092 2E-06 49.0 2.2 26 932-957 72-97 (146)
75 cd00152 PTX Pentraxins are pla 92.0 2.4 5.2E-05 43.4 12.8 85 291-393 30-116 (201)
76 KOG1834|consensus 91.6 1.1 2.4E-05 51.4 10.2 90 92-192 363-465 (952)
77 smart00560 LamGL LamG-like jel 91.3 2.4 5.2E-05 40.1 11.1 42 169-212 61-104 (133)
78 PF06439 DUF1080: Domain of Un 91.3 0.16 3.5E-06 51.2 3.3 94 95-197 53-155 (185)
79 PHA03099 epidermal growth fact 91.3 0.24 5.2E-06 44.6 3.7 38 825-863 42-82 (139)
80 PF00354 Pentaxin: Pentaxin fa 90.7 1.7 3.6E-05 44.2 9.8 82 291-390 24-107 (195)
81 smart00051 DSL delta serrate l 90.3 0.37 7.9E-06 38.8 3.7 45 849-901 18-63 (63)
82 cd01475 vWA_Matrilin VWA_Matri 90.2 0.24 5.3E-06 51.7 3.5 41 815-858 178-218 (224)
83 PF14670 FXa_inhibition: Coagu 90.1 0.2 4.4E-06 35.1 1.8 23 734-756 9-31 (36)
84 KOG3607|consensus 89.2 1.2 2.7E-05 53.9 8.6 29 871-905 631-659 (716)
85 cd01475 vWA_Matrilin VWA_Matri 88.1 0.51 1.1E-05 49.3 4.0 40 716-756 181-220 (224)
86 smart00560 LamGL LamG-like jel 85.4 13 0.00029 35.0 11.9 27 366-393 61-87 (133)
87 cd01951 lectin_L-type legume l 84.3 22 0.00048 36.9 14.0 97 95-191 54-178 (223)
88 PF12946 EGF_MSP1_1: MSP1 EGF 82.9 0.95 2.1E-05 31.6 1.9 28 643-670 2-30 (37)
89 PHA02887 EGF-like protein; Pro 82.2 1.3 2.9E-05 39.3 3.0 31 872-904 94-124 (126)
90 PF12946 EGF_MSP1_1: MSP1 EGF 82.2 0.68 1.5E-05 32.3 1.0 32 726-757 2-34 (37)
91 PF02009 Rifin_STEVOR: Rifin/s 81.4 1.1 2.5E-05 48.1 2.9 29 919-947 258-286 (299)
92 PF01034 Syndecan: Syndecan do 80.2 0.63 1.4E-05 36.8 0.4 21 938-958 30-50 (64)
93 TIGR01478 STEVOR variant surfa 78.7 2.1 4.6E-05 44.7 3.7 30 921-950 262-291 (295)
94 KOG1025|consensus 78.1 9.7 0.00021 46.0 9.1 16 3-19 6-21 (1177)
95 PF14099 Polysacc_lyase: Polys 77.9 15 0.00033 38.2 10.1 61 134-194 113-182 (224)
96 PTZ00370 STEVOR; Provisional 76.1 2.3 5E-05 44.5 3.1 28 922-949 259-286 (296)
97 PTZ00214 high cysteine membran 74.1 1.2 2.6E-05 54.9 0.6 57 848-904 682-769 (800)
98 cd06903 lectin_EMP46_EMP47 EMP 73.9 64 0.0014 33.3 13.0 29 166-194 148-178 (215)
99 PF12273 RCR: Chitin synthesis 71.9 3.5 7.5E-05 38.9 3.0 23 923-945 7-29 (130)
100 PF03302 VSP: Giardia variant- 71.8 8.6 0.00019 43.8 6.7 33 913-945 364-396 (397)
101 PF09064 Tme5_EGF_like: Thromb 71.5 3.4 7.4E-05 28.2 2.0 21 877-897 7-27 (34)
102 smart00180 EGF_Lam Laminin-typ 71.1 4.4 9.4E-05 30.3 2.8 17 704-720 16-32 (46)
103 PF05393 Hum_adeno_E3A: Human 70.3 11 0.00023 31.8 5.0 27 931-957 45-71 (94)
104 PTZ00046 rifin; Provisional 68.8 3.6 7.7E-05 45.0 2.6 29 919-947 317-345 (358)
105 TIGR01477 RIFIN variant surfac 68.6 3.7 7.9E-05 44.8 2.6 29 919-947 312-340 (353)
106 PF05568 ASFV_J13L: African sw 68.6 9.1 0.0002 35.3 4.7 11 937-947 48-58 (189)
107 PHA02887 EGF-like protein; Pro 67.8 3.9 8.5E-05 36.5 2.2 30 232-262 93-124 (126)
108 PF15330 SIT: SHP2-interacting 67.1 15 0.00032 33.1 5.8 17 924-940 7-23 (107)
109 PF12191 stn_TNFRSF12A: Tumour 66.8 4 8.6E-05 37.1 2.1 9 919-927 81-89 (129)
110 PF00053 Laminin_EGF: Laminin 66.3 3.7 8E-05 31.1 1.6 18 886-903 16-33 (49)
111 PF07953 Toxin_R_bind_N: Clost 65.9 1.4E+02 0.0031 29.5 13.1 115 68-197 27-157 (195)
112 cd00055 EGF_Lam Laminin-type e 65.6 5.7 0.00012 30.3 2.5 20 841-862 14-33 (50)
113 PF06439 DUF1080: Domain of Un 65.4 6.4 0.00014 39.4 3.7 92 290-393 51-151 (185)
114 KOG3607|consensus 64.3 17 0.00038 44.3 7.5 29 832-863 629-657 (716)
115 cd00055 EGF_Lam Laminin-type e 64.1 7 0.00015 29.8 2.7 18 886-903 17-34 (50)
116 PF00053 Laminin_EGF: Laminin 64.1 3.9 8.5E-05 30.9 1.3 21 840-862 12-32 (49)
117 smart00180 EGF_Lam Laminin-typ 63.1 7.6 0.00017 29.0 2.7 14 662-675 19-32 (46)
118 PF15102 TMEM154: TMEM154 prot 62.8 3.1 6.8E-05 39.1 0.7 33 916-948 58-91 (146)
119 PF02057 Glyco_hydro_59: Glyco 59.4 49 0.0011 39.7 9.7 95 95-195 542-637 (669)
120 PF01683 EB: EB module; Inter 58.5 16 0.00036 27.9 4.0 23 730-756 27-49 (52)
121 PF01414 DSL: Delta serrate li 57.8 3.2 7E-05 33.4 -0.1 47 808-861 17-63 (63)
122 PF06679 DUF1180: Protein of u 57.6 19 0.00041 35.1 5.0 11 962-972 137-147 (163)
123 PF08693 SKG6: Transmembrane a 57.4 2.9 6.2E-05 29.9 -0.4 6 920-925 18-23 (40)
124 PF15176 LRR19-TM: Leucine-ric 57.3 20 0.00042 31.4 4.4 36 913-948 14-49 (102)
125 PF01414 DSL: Delta serrate li 57.1 2.8 6.1E-05 33.7 -0.6 47 847-901 16-63 (63)
126 PF00139 Lectin_legB: Legume l 54.2 78 0.0017 33.2 9.6 57 134-190 116-190 (236)
127 PF11884 DUF3404: Domain of un 52.4 19 0.00041 37.8 4.4 16 933-948 245-260 (262)
128 KOG3546|consensus 51.3 56 0.0012 38.0 8.1 130 67-213 63-205 (1167)
129 KOG3653|consensus 51.0 71 0.0015 36.5 8.7 29 919-947 157-185 (534)
130 PF07213 DAP10: DAP10 membrane 49.9 20 0.00043 30.0 3.2 29 919-947 36-64 (79)
131 PF01299 Lamp: Lysosome-associ 49.4 13 0.00029 40.7 3.0 22 924-945 277-298 (306)
132 PF01683 EB: EB module; Inter 48.8 24 0.00053 26.9 3.5 20 686-715 27-46 (52)
133 PF02439 Adeno_E3_CR2: Adenovi 48.4 35 0.00076 24.2 3.7 28 919-946 9-36 (38)
134 KOG1834|consensus 48.3 1.2E+02 0.0027 35.7 10.1 87 289-389 363-462 (952)
135 PF08366 LLGL: LLGL2; InterPr 47.1 2E+02 0.0043 25.9 9.3 45 101-155 19-64 (105)
136 PF08374 Protocadherin: Protoc 46.3 14 0.00031 37.1 2.2 24 916-939 37-60 (221)
137 PF01102 Glycophorin_A: Glycop 46.2 26 0.00056 32.3 3.8 17 933-949 78-94 (122)
138 PF15050 SCIMP: SCIMP protein 45.4 25 0.00053 31.7 3.3 18 927-944 17-34 (133)
139 KOG3637|consensus 44.3 18 0.00039 46.3 3.3 35 913-947 976-1010(1030)
140 PF09224 DUF1961: Domain of un 44.0 46 0.00099 33.6 5.3 32 165-196 155-186 (218)
141 KOG3546|consensus 42.0 85 0.0018 36.6 7.7 81 290-382 85-173 (1167)
142 TIGR01478 STEVOR variant surfa 41.1 25 0.00053 37.1 3.1 41 915-955 253-293 (295)
143 PF12768 Rax2: Cortical protei 40.0 35 0.00075 36.8 4.2 8 964-971 270-277 (281)
144 PF12877 DUF3827: Domain of un 39.7 34 0.00073 40.3 4.2 23 919-941 272-294 (684)
145 PF06365 CD34_antigen: CD34/Po 39.6 37 0.00081 34.3 4.0 16 932-947 116-131 (202)
146 PF04863 EGF_alliinase: Alliin 37.3 10 0.00023 29.0 -0.1 40 685-726 17-56 (56)
147 PTZ00370 STEVOR; Provisional 37.1 19 0.00041 38.0 1.6 41 915-955 249-289 (296)
148 PTZ00334 trans-sialidase; Prov 36.8 1.1E+02 0.0025 37.6 8.3 50 165-214 639-691 (780)
149 PF13908 Shisa: Wnt and FGF in 35.3 24 0.00052 35.3 2.0 9 919-927 81-89 (179)
150 PF02009 Rifin_STEVOR: Rifin/s 35.2 33 0.00071 37.2 3.1 28 923-950 259-286 (299)
151 PF09264 Sial-lect-inser: Vibr 35.2 2.2E+02 0.0048 28.3 8.3 59 133-193 56-118 (198)
152 PF01034 Syndecan: Syndecan do 34.9 12 0.00026 29.9 -0.2 30 916-946 12-41 (64)
153 PF06024 DUF912: Nucleopolyhed 33.8 23 0.00049 31.7 1.4 6 922-927 67-72 (101)
154 PF02480 Herpes_gE: Alphaherpe 33.3 14 0.00031 42.5 0.0 8 233-240 28-35 (439)
155 PF00954 S_locus_glycop: S-loc 32.8 41 0.00088 30.5 2.9 29 724-753 78-107 (110)
156 PF05910 DUF868: Plant protein 32.2 4.3E+02 0.0093 28.3 10.6 54 164-217 150-210 (274)
157 PF09313 DUF1971: Domain of un 31.4 1.1E+02 0.0025 26.1 5.1 48 133-180 23-76 (82)
158 PF00954 S_locus_glycop: S-loc 31.3 39 0.00084 30.6 2.6 25 832-857 83-107 (110)
159 KOG0196|consensus 31.2 64 0.0014 39.3 4.8 61 584-647 258-332 (996)
160 KOG1653|consensus 29.4 50 0.0011 31.7 2.9 46 134-179 66-114 (175)
161 PF07204 Orthoreo_P10: Orthore 29.2 31 0.00066 29.7 1.3 9 924-932 49-57 (98)
162 PF06697 DUF1191: Protein of u 27.5 35 0.00076 36.2 1.7 21 915-935 212-232 (278)
163 PF15099 PIRT: Phosphoinositid 26.9 37 0.00081 31.1 1.5 16 919-934 82-97 (129)
164 PF05568 ASFV_J13L: African sw 26.5 1.1E+02 0.0025 28.5 4.5 27 920-946 34-60 (189)
165 PF15069 FAM163: FAM163 family 25.9 1.6E+02 0.0035 27.9 5.4 18 919-936 8-25 (143)
166 PF14099 Polysacc_lyase: Polys 25.8 1.1E+02 0.0025 31.6 5.3 47 330-376 112-162 (224)
167 cd00070 GLECT Galectin/galacto 25.7 5.3E+02 0.012 23.8 10.3 33 162-194 70-102 (127)
168 PF08114 PMP1_2: ATPase proteo 25.6 1.1E+02 0.0025 21.9 3.3 6 923-928 16-21 (43)
169 cd06901 lectin_VIP36_VIPL VIP3 25.1 8.1E+02 0.018 25.9 11.4 22 95-116 57-84 (248)
170 PF04971 Lysis_S: Lysis protei 24.9 81 0.0018 25.6 2.9 18 930-947 45-62 (68)
171 PF12955 DUF3844: Domain of un 24.3 57 0.0012 29.1 2.2 34 229-262 11-62 (103)
172 PF14316 DUF4381: Domain of un 23.7 71 0.0015 30.7 3.0 9 932-940 34-42 (146)
173 PF15330 SIT: SHP2-interacting 23.7 2.2E+02 0.0047 25.8 5.8 34 922-955 2-35 (107)
174 cd04508 TUDOR Tudor domains ar 23.3 1.2E+02 0.0025 22.4 3.5 28 364-391 10-38 (48)
175 PF07622 DUF1583: Protein of u 22.7 1.1E+02 0.0024 34.0 4.4 35 162-196 83-117 (399)
176 PF14991 MLANA: Protein melan- 22.6 23 0.0005 31.7 -0.6 9 920-928 27-35 (118)
177 PF07883 Cupin_2: Cupin domain 22.3 3E+02 0.0065 21.9 6.2 48 136-185 20-68 (71)
178 cd00413 Glyco_hydrolase_16 gly 22.0 8.2E+02 0.018 24.6 13.2 31 167-197 140-170 (210)
179 PHA03290 envelope glycoprotein 21.4 90 0.0019 33.8 3.3 40 917-956 273-313 (357)
180 PF11250 DUF3049: Protein of u 21.3 2.8E+02 0.006 21.8 5.1 38 298-347 18-55 (56)
181 PF11980 DUF3481: Domain of un 21.3 1.2E+02 0.0025 25.8 3.2 30 915-944 15-44 (87)
182 PF04689 S1FA: DNA binding pro 20.8 1.3E+02 0.0028 24.0 3.2 25 917-941 14-38 (69)
183 PF12191 stn_TNFRSF12A: Tumour 20.8 32 0.00069 31.5 -0.1 17 919-935 78-94 (129)
184 PF13179 DUF4006: Family of un 20.5 1.6E+02 0.0034 23.9 3.7 27 919-945 13-39 (66)
185 KOG3658|consensus 20.3 5.6E+02 0.012 30.8 9.5 18 135-152 118-135 (764)
No 1
>KOG3514|consensus
Probab=100.00 E-value=7.5e-50 Score=447.98 Aligned_cols=475 Identities=20% Similarity=0.353 Sum_probs=349.6
Q ss_pred cccccCCCeeEEEEeCccccccceeeEEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEE
Q psy9685 71 FGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRL 150 (979)
Q Consensus 71 Fg~~~~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~ 150 (979)
|-++++++||..|+.|... ..-+++|+|||++++|||||..+++ ..||+.|.|++|+|+++|
T Consensus 26 ~~l~Ga~~s~ary~kW~~~-----~~g~ls~e~kt~q~~glllytDdGg-------------t~df~eL~lveG~lrLrf 87 (1591)
T KOG3514|consen 26 IILTGAPDSYARYPKWAHS-----FEGSLSMELKTRQSDGLLLYTDDGG-------------THDFYELTLVEGHLRLRF 87 (1591)
T ss_pred eEecCCCcchhhchhhhcc-----cCceeeeeeeccCCCcEEEEecCCC-------------ceeeeEEEEecceEEEEE
Confidence 4444489999999997666 6778999999999999999987532 569999999999999999
Q ss_pred EeCCcceEEeecCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEecCc-ccccccc-eeEEcCCCCccccc--------
Q psy9685 151 QFNSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISS-TGILDVQ-VLYLGGIPETVHHH-------- 220 (979)
Q Consensus 151 ~~g~~~~~~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~-~~~l~~~-~lyvGG~p~~~~~~-------- 220 (979)
++|+++..+.. ..+++|++||+|.|.|+.++..|.||+.++.....+. ....++- .+||||+|......
T Consensus 88 ~Lg~~~~~~q~-~~~i~D~~WH~v~i~r~~e~t~L~vDgv~~~~~~~~~~f~fg~iasdvfVGGlP~~~~la~l~lp~v~ 166 (1591)
T KOG3514|consen 88 RLGNSNEFGQR-RVRIDDDKWHTVTIFRSWENTKLEVDGVLVFKILNQRSFVFGNIASDVFVGGLPNMHMLAVLSLPLVR 166 (1591)
T ss_pred EecCCCceeee-cceecCCceeEEEEEeccccceEEechhhhhhhhhcceeeeeeeehheeecCCChHHhhhhhcCcccc
Confidence 99977655554 4899999999999999999999999997665554433 3333333 89999999654331
Q ss_pred ------ccccCCCc---------------------------------cCCCCCCCCccccCCCCeeeecCCCCCCCCccc
Q psy9685 221 ------RSIRSPYQ---------------------------------PSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQY 261 (979)
Q Consensus 221 ------~~~~~~~~---------------------------------~~~pc~~~G~C~~~~~~~~C~C~~~~~g~~C~~ 261 (979)
..+|++.. ...+|.++|.|+....+.+|+|...+.|.+|++
T Consensus 167 yep~frg~~rnl~y~~~p~g~t~~q~l~~~~d~~c~d~~~~~~~~~~~~~~c~~~g~c~s~d~gp~c~c~~~~dgq~cek 246 (1591)
T KOG3514|consen 167 YEPRFRGNVRNLMYRQYPQGVTSPQLLEVGTDTNCDDHCKSKSMSSREQFVCLNDGECYSSDDGPHCDCQFDHDGQNCEK 246 (1591)
T ss_pred cccccCccceeeeeecCCCCcCChhhhhcccCCCCcCCCCCccccccccceeccCCeEecCCCCCccccccccCcccccc
Confidence 01111110 334789999999999999999999999999998
Q ss_pred ccCc--ccccCCCcceeeEEEecCcchhccccceeEEEEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEe
Q psy9685 262 NFTA--ATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEME 339 (979)
Q Consensus 262 ~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~ 339 (979)
+... ++|++..+..|-+. .. ........|+|.|||.+.||||||.|. +.||+.|.|+
T Consensus 247 eK~~~eaTF~G~ef~~YDls--~n----pI~s~~d~itl~FrT~q~ngllfytG~---------------~~dYlnlaL~ 305 (1591)
T KOG3514|consen 247 EKNDGEATFGGDEFVGYDLS--QN----PIRSKKDNITLTFRTVQGNGLLFYTGD---------------EKDYLNLALQ 305 (1591)
T ss_pred ccCcceEEecCceEEEeecc--CC----cccccccceEEEEEEecCceeEEEccC---------------CcceeeEeec
Confidence 7654 78998665554332 22 224456789999999999999999986 6799999999
Q ss_pred cCEEEEEEEcCCcCceee--ecCeeecCCCeeEEEEEeecceeeeEE----------------------EEEccCCCccc
Q psy9685 340 AGELFVRLQFNSTPESYN--VGGVKLADGNNHLIQTISSTGILDVQV----------------------LYLGGIPETVH 395 (979)
Q Consensus 340 ~G~l~~~~~~g~~~~~~~--~~~~~l~DG~wH~V~~~~~~~~l~l~v----------------------lyvGG~p~~~~ 395 (979)
+|-|.+..++++|...+. ..+.+++|..||.|.+.|.-..+.+.| +|+||.|..
T Consensus 306 dGaV~l~~~l~~g~~e~~~~p~~~rfdD~~WH~V~v~R~~~m~t~~VDg~~t~~~~~a~~~tmlsss~~fyvgg~~~~-- 383 (1591)
T KOG3514|consen 306 DGAVSLSSKLDGGDAEIIRMPNSFRFDDDSWHTVIVERSLQMMTLIVDGRRTEIRQYAPELTMLSSSDFFYVGGSPNT-- 383 (1591)
T ss_pred CCcEEEEEecCCccceeEEccccccccCCcceEEEEEeeeEEEEEEEccEEecccccccceeEeeccceEEecCCCCc--
Confidence 999999999999887765 457899999999999999876665533 888888766
Q ss_pred ccccccCCCCCCCCCCccccccccccccccccccccccCCccccCCCCCcceeEeEEEEE--------------------
Q psy9685 396 HHRSIRSPYQPSRSYPRWATYDEMENYTTARRRYSRQTAGEKQFSPLPNFKGIIHDVQIY-------------------- 455 (979)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~F~Gci~~v~i~-------------------- 455 (979)
.++.++.++ |.||+++|+..
T Consensus 384 --~~l~gsrVs--------------------------------------F~GClkkV~y~~d~~rl~L~~LAk~g~~~~k 423 (1591)
T KOG3514|consen 384 --ADLPGSRVS--------------------------------------FMGCLKKVVYKNDDTRLELSRLAKQGDSKMK 423 (1591)
T ss_pred --cccCCCcee--------------------------------------eeeeeeeeEeccCceeehhhHHhhcCCceeE
Confidence 333333322 77777777662
Q ss_pred -------------------eecCCCCccCCCC----CCCCCc--ccc------------------chhcccccceEEEEe
Q psy9685 456 -------------------FISGSGDRSSPSS----NGAGSE--ETS------------------YIAAEMEAGELFVRL 492 (979)
Q Consensus 456 -------------------~~~~~~~~~lp~~----~g~~~~--rt~------------------~~~~~~~~~~~~~~~ 492 (979)
|......+.||.. .|++|| ||. |++.|+..+||+..+
T Consensus 424 ~~G~l~y~C~n~~~~DpvtFtt~es~l~LP~Wnt~~~gSiSf~FRTtepnGlil~~~g~~~~~~d~~A~ELldghlyl~l 503 (1591)
T KOG3514|consen 424 TEGDLSYSCENVAQLDPVTFTTPESYLTLPRWNTKKSGSISFDFRTTEPNGLILFHGGPQANATDYFAIELLDGHLYLLL 503 (1591)
T ss_pred eeceEEEecCCCCccCceeeecccceeeccccccCCcceeEEEEeecCCCceEEEccCcccccccEEEEEEeCCeEEEEE
Confidence 5667777777744 678887 775 999999999999999
Q ss_pred eeCCCceeeeecceeecCCCceEEEeCCCC-----ceeeeeccccc-CeeEEEEecCc-----------ccccc---ccc
Q psy9685 493 QFNSTPESYNVGGVKLADGNNHLIQVGPGF-----DFQRIDHPFTK-KHVIVCVLNAH-----------QLSGI---SDQ 552 (979)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~---~~~ 552 (979)
+|+++...+.....+++|++||.+++.+.. ....+.-+|.. +....+.+..+ .++.+ ..+
T Consensus 504 dlGSG~iklras~rkv~DGeWhhv~l~R~gR~gsvsVd~~~~df~tpG~s~iL~ld~~mylG~~~n~l~~P~~vWta~L~ 583 (1591)
T KOG3514|consen 504 DLGSGVIKLRASSRKVNDGEWHHVDLQRDGRTGSVSVDAIKTDFSTPGDSEILDLDDPMYLGEVPNNLVYPSEVWTAALR 583 (1591)
T ss_pred ecCCceEEeeeecccccCCceEEEEeeccCccceEEEeeeecCccCCCcceeEeecCceeeccCCCCccCcHHHHHHHHh
Confidence 999999999999999999999999986541 11112222221 11111111111 11111 256
Q ss_pred ccccccccccccceeeeecccCCCCCCCCCCCceEECCCCccCCCCCCCC-CCCCCCCCCCCCeeccCCCceeeec-CCC
Q psy9685 553 ADLVRCTSEAYLNLIIYISWLLSPHDSDPLTSYACKCPAGYSSETCAVDI-DECVTHNCQNGARCIDGVARYSCEC-TPG 630 (979)
Q Consensus 553 ~~~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C~~G~~g~~C~~~~-~~C~~~~C~~~~~C~~~~g~~~C~C-~~G 630 (979)
.+++||++++.++............... .| .-..|.... ..|..+||.|++.|...|+.+.|.| ..+
T Consensus 584 ~GyvGCirdl~i~G~s~di~q~ae~q~s----------ag-vkpsCs~~~~~~C~~nPC~N~g~C~egwNrfiCDCs~T~ 652 (1591)
T KOG3514|consen 584 KGYVGCIRDLFIDGVSTDIRQEAEAQNS----------AG-VKPSCSLSNEKICESNPCQNGGKCSEGWNRFICDCSGTG 652 (1591)
T ss_pred ccchheehhheecceehhhHHHhhhccc----------cc-cCcccchhhccccCCCcccCCCCccccccccccccccCc
Confidence 8999999999988554222211100000 00 112344322 3799999999999999999999999 568
Q ss_pred CCCCcccc
Q psy9685 631 WEGALCEK 638 (979)
Q Consensus 631 ~~G~~C~~ 638 (979)
|.|+.|+.
T Consensus 653 ~~G~~Cer 660 (1591)
T KOG3514|consen 653 FEGRTCER 660 (1591)
T ss_pred ccCccccc
Confidence 99999974
No 2
>KOG3514|consensus
Probab=100.00 E-value=7.7e-46 Score=415.84 Aligned_cols=486 Identities=20% Similarity=0.314 Sum_probs=339.0
Q ss_pred ccccccccCCCeeEEEEeCccccccceeeEEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEE
Q psy9685 68 AATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELF 147 (979)
Q Consensus 68 a~~Fg~~~~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~ 147 (979)
..+|- ++.||+.++.|+.. +..+|||.|||++|||||||.++ .+.+..||||+||.||+|.
T Consensus 440 pvtFt---t~es~l~LP~Wnt~-----~~gSiSf~FRTtepnGlil~~~g-----------~~~~~~d~~A~ELldghly 500 (1591)
T KOG3514|consen 440 PVTFT---TPESYLTLPRWNTK-----KSGSISFDFRTTEPNGLILFHGG-----------PQANATDYFAIELLDGHLY 500 (1591)
T ss_pred ceeee---cccceeeccccccC-----CcceeEEEEeecCCCceEEEccC-----------cccccccEEEEEEeCCeEE
Confidence 45665 48999999999888 78899999999999999999885 4455789999999999999
Q ss_pred EEEEeCCcceEEeecCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEecCcccccccc-eeEEcCCCCcccc-------
Q psy9685 148 VRLQFNSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGIPETVHH------- 219 (979)
Q Consensus 148 ~~~~~g~~~~~~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~l~~~-~lyvGG~p~~~~~------- 219 (979)
+.+|+|+|...++.+..++|||+||+|.+.|+++.+.++||.......++|...+|+++ +||||-.|.....
T Consensus 501 l~ldlGSG~iklras~rkv~DGeWhhv~l~R~gR~gsvsVd~~~~df~tpG~s~iL~ld~~mylG~~~n~l~~P~~vWta 580 (1591)
T KOG3514|consen 501 LLLDLGSGVIKLRASSRKVNDGEWHHVDLQRDGRTGSVSVDAIKTDFSTPGDSEILDLDDPMYLGEVPNNLVYPSEVWTA 580 (1591)
T ss_pred EEEecCCceEEeeeecccccCCceEEEEeeccCccceEEEeeeecCccCCCcceeEeecCceeeccCCCCccCcHHHHHH
Confidence 99999999888888889999999999999999999999999999888999999999998 9999976655221
Q ss_pred ------cccccCC-------------------------------CccCCCCCCCCccccCCCCeeeecCC-CCCCCCccc
Q psy9685 220 ------HRSIRSP-------------------------------YQPSRSYPSGGHCTDLWRDFSCSCVR-PFLGHTCQY 261 (979)
Q Consensus 220 ------~~~~~~~-------------------------------~~~~~pc~~~G~C~~~~~~~~C~C~~-~~~g~~C~~ 261 (979)
.+++|++ ++.++||+|+|.|.+.|+.|.|+|.. +|.|+.|+.
T Consensus 581 ~L~~GyvGCirdl~i~G~s~di~q~ae~q~sagvkpsCs~~~~~~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~Cer 660 (1591)
T KOG3514|consen 581 ALRKGYVGCIRDLFIDGVSTDIRQEAEAQNSAGVKPSCSLSNEKICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCER 660 (1591)
T ss_pred HHhccchheehhheecceehhhHHHhhhccccccCcccchhhccccCCCcccCCCCccccccccccccccCcccCccccc
Confidence 1223322 34789999999999999999999999 999999999
Q ss_pred ccCcccccCCCcceeeEEEecCcchhccccceeEEEEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecC
Q psy9685 262 NFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAG 341 (979)
Q Consensus 262 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G 341 (979)
+.+...|.+.... ...++. .++....+|++.|||.++.||||..+.. +..|-|.|+|.+|
T Consensus 661 E~t~ls~nGs~~m--~i~L~~-----~~~tq~E~v~iRF~t~r~~Gll~~Tta~-------------~s~D~l~l~L~~g 720 (1591)
T KOG3514|consen 661 EATALSYNGSMSM--KIVLPH-----TMHTQAEDVSIRFRTQRAYGLLFATTAR-------------GSADTLRLELDAG 720 (1591)
T ss_pred eeeeEEEcCeeeE--EEEecc-----cceeecceEEEEEEecccceeEEEeccC-------------CCCceEEEEEecc
Confidence 9988888774322 222221 2345567899999999999999998553 4779999999999
Q ss_pred EEEEEEEcCCcCceeeecCeeecCCCeeEEEEEeecceeeeEEEE--E-ccCCCcccccccccCCCCCCCCCCccccccc
Q psy9685 342 ELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISSTGILDVQVLY--L-GGIPETVHHHRSIRSPYQPSRSYPRWATYDE 418 (979)
Q Consensus 342 ~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~~~~~~~~l~l~vly--v-GG~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (979)
+|++.+++.+ +. .+.....|||++||+|++.|.+..|.|.|=+ + ++.-.+.+....+++..... ..+
T Consensus 721 ~vkl~v~ls~-~~-nlfag~~LnDN~WHtvrv~Rrg~~L~L~vD~~~~~~~~~~g~h~~le~~~i~~g~--------e~~ 790 (1591)
T KOG3514|consen 721 QVKLFVNLSG-PE-NLFAGQSLNDNEWHTVRVVRRGKSLLLYVDFWSVSIYTMNGIHVRLEFHNIETGT--------ESR 790 (1591)
T ss_pred eEEEEEecCC-Cc-ceeccccccCCcceEEEEEEcccceEEEeccccceeeeecCceEEEEEeeecccc--------ccc
Confidence 9999999884 33 3445559999999999999999988775310 0 10111111111111111100 000
Q ss_pred cccccccccccccccCCccccCCCCCcceeEeEEEEE-------eecCCCCc-cCCCCCC--------------------
Q psy9685 419 MENYTTARRRYSRQTAGEKQFSPLPNFKGIIHDVQIY-------FISGSGDR-SSPSSNG-------------------- 470 (979)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~~~~~~~~~F~Gci~~v~i~-------~~~~~~~~-~lp~~~g-------------------- 470 (979)
+ .-+-+++|+|-++.+.++ +..++... +|+..++
T Consensus 791 ~------------------~s~~~~nFiG~l~~LvFNG~~Yld~~K~~~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~l 852 (1591)
T KOG3514|consen 791 A------------------PSSVPSNFIGHLSGLVFNGQDYLDKCKMGDIQLSELSARFKLRAIVADPATFKSKSSYVKL 852 (1591)
T ss_pred c------------------CCCCChhhhhhhhheEECcHHHHHHHhcCCcchhhcchhhCceEEeeccceeeechhhhhh
Confidence 0 112345577777666664 22222222 2332211
Q ss_pred ----------------------CCCc----cccchhcccccceEEEEeeeCCCceeeeecc-eeecCCCceEEEeCCC-C
Q psy9685 471 ----------------------AGSE----ETSYIAAEMEAGELFVRLQFNSTPESYNVGG-VKLADGNNHLIQVGPG-F 522 (979)
Q Consensus 471 ----------------------~~~~----rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-~ 522 (979)
-+.| +.+++++|+..++|++.|+++.++.++...+ ..++|+.||-|.|.+. .
T Consensus 853 a~L~ay~s~~l~Fqfkt~sp~gll~fn~gd~ndfi~velvnG~ihYtfdlg~gp~~~k~~sr~hlnDnrWHnV~I~rd~~ 932 (1591)
T KOG3514|consen 853 ATLQAYFSMHLFFQFKTTSPDGLLLFNSGDGNDFIAVELVNGYIHYTFDLGNGPTSMKGPSRQHLNDNRWHNVLIYRDKT 932 (1591)
T ss_pred hhhheeeEEEEEEEEeecCCCeEEEecCCCCCceEEEEEeCcEEEEEEEcCCCcccccCcccCcCccccceeEEEEcCCC
Confidence 1111 2238899999999999999998877666555 5589999998888553 2
Q ss_pred ceeeeecccccCeeEEEEec--------C---------cccc----cccccccccccccccccc-eeeeec-ccCCCCCC
Q psy9685 523 DFQRIDHPFTKKHVIVCVLN--------A---------HQLS----GISDQADLVRCTSEAYLN-LIIYIS-WLLSPHDS 579 (979)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~--------~---------~~~~----~~~~~~~~~gC~~~~~~~-~~~~~~-~~~~~~~~ 579 (979)
..|.+. +. +......++ . .+.+ .+....++.||+....++ .+|-+. ..+++
T Consensus 933 ~~HtL~--vD-~s~~t~~~~g~~~l~l~g~LyiGGv~k~m~~~~p~~~asR~g~~g~~~s~dl~~r~p~L~~~a~~~--- 1006 (1591)
T KOG3514|consen 933 NTHTLK--VD-NSSTTQIIDGAVNLDLKGKLYIGGVSKPMYSFLPKLVASRSGFQGCLASLDLGGRLPDLISDALFE--- 1006 (1591)
T ss_pred CceEEE--ec-CceEEEEecCccccccccceecccccccccccccceeeccCCCCCCcCccCccccchhHHHHhhhh---
Confidence 333322 11 111111100 0 0111 113456777887776665 222111 12222
Q ss_pred CCCCCceEECCCCccCCCCCCCCCCCCCCCCCCCCeeccCCCceeeecCC-CCCCCccc
Q psy9685 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTP-GWEGALCE 637 (979)
Q Consensus 580 ~~~~~~~C~C~~G~~g~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~-G~~G~~C~ 637 (979)
.+.....|+..+..|..+.|.+++.|...|..+.|.|.. .|.|+.|.
T Consensus 1007 -----------s~lv~~~~sgpst~c~~~acanhG~c~q~w~~~~c~csmtS~~Gp~C~ 1054 (1591)
T KOG3514|consen 1007 -----------SGLVEVGCSGPSTTCSEDACANHGVCIQQWNGIACDCSMTSYSGPRCN 1054 (1591)
T ss_pred -----------ccceeeeccCCCcccchhhhhccceeeeeecceeeeccccccCCCccC
Confidence 122233455455778889999999999999999999964 67888885
No 3
>KOG4289|consensus
Probab=100.00 E-value=6.1e-42 Score=391.79 Aligned_cols=274 Identities=22% Similarity=0.329 Sum_probs=209.4
Q ss_pred CCCeeEEEEeCccccccceeeEEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCc
Q psy9685 76 TTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNST 155 (979)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~ 155 (979)
-++|++.|..... +..+.++|+|-|.+.||||||+|++ ..||++|++++++|++.|..|..
T Consensus 1323 p~~sfv~frglrq-----Rfh~TlslsfaT~~~nGlL~ynGne--------------khDFvalevVd~qvqltfS~Ges 1383 (2531)
T KOG4289|consen 1323 PPESFVTFRGLRQ-----RFHFTLSLSFATIERNGLLLYNGNE--------------KHDFVALEVVDEQVQLTFSAGES 1383 (2531)
T ss_pred CchheEEEecccc-----ceEEEEEEEEEEeeecceEEecCCc--------------ccceEeeeeeeeeEEEEEecccc
Confidence 3578888887222 3778899999999999999999863 67999999999999999999976
Q ss_pred ceEEee-cCeeecCCCcEEEEEEEEceEEEEEECCEEeEEE--------------ecCcccccccc-eeEEcCCCCcccc
Q psy9685 156 PESYNV-GGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRK--------------TISSTGILDVQ-VLYLGGIPETVHH 219 (979)
Q Consensus 156 ~~~~~~-~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~--------------~~~~~~~l~~~-~lyvGG~p~~~~~ 219 (979)
..++.- .+..++||+||+|.+....+.+.|+||+++.... ..++.+.|+++ +|+|||+|.....
T Consensus 1384 ~t~v~p~Vp~gvsDGqWHtV~l~YyNK~av~svDdCdt~~al~fg~~gNCAa~g~q~~sKKsLDltgpLlLGGvPe~fpv 1463 (2531)
T KOG4289|consen 1384 TTTVSPDVPGGVSDGQWHTVQLEYYNKVAVVSVDDCDTNVALRFGTIGNCAAQGTQTGSKKSLDLTGPLLLGGVPETFPV 1463 (2531)
T ss_pred cceecCCCCCCcccCceeEEEEEEeceEEEEEeccccccceeeecCccchHhhhhccCcceeeeccCceeecCCCCcchh
Confidence 443332 5678999999999999999999999999754322 11345668888 9999999976433
Q ss_pred -----ccc---------------------------ccCCCccCCCCCCCCccccCCCCeeeecCCCCCCCCcccccCc-c
Q psy9685 220 -----HRS---------------------------IRSPYQPSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQYNFTA-A 266 (979)
Q Consensus 220 -----~~~---------------------------~~~~~~~~~pc~~~G~C~~~~~~~~C~C~~~~~g~~C~~~~~~-~ 266 (979)
.++ .|+.|+++++|.|+|.|++.|++|.|+||.+|.|+.|.+.+.. .
T Consensus 1464 ~~k~FvGCmrdLsvD~~~VDma~fianngt~eGC~ark~fCdsg~C~n~g~CvnrWg~~~C~CP~~fggk~c~~~m~~pq 1543 (2531)
T KOG4289|consen 1464 IEKQFVGCMRDLSVDGRDVDMATFIANNGTHEGCKARKNFCDSGQCSNGGTCVNRWGGFSCECPLGFGGKGCCQGMAHPQ 1543 (2531)
T ss_pred hHhHhhhhhhhcccccccccHHHHHhhcCcccCchhhhcccCCCccCCCCeeecccCcEeecCccccCCcchhhccCCch
Confidence 111 3466778999999999999999999999999999999988655 3
Q ss_pred cccCCCcceeeEEEecCcchhccccceeEEEEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEE
Q psy9685 267 TFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVR 346 (979)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~ 346 (979)
.|.+++. +.+... ...+.-.+.++|+|||++.+|+||.+... +..-+.|+|.+|+|.+.
T Consensus 1544 ~frG~sl----~sw~~~---~~~vSvPwylsl~FRTr~ad~vl~~~~~~--------------~rst~~lqld~g~l~~~ 1602 (2531)
T KOG4289|consen 1544 HFRGHSL----VSWEGL---PSQVSVPWYLSLMFRTRRADGVLMQAEFG--------------GRSTYNLQLDDGTLKYN 1602 (2531)
T ss_pred hccccce----eeecCC---CcceecceEEEEEEEeeccccEEEEEEeC--------------CCceEEEEEcCCEEEEE
Confidence 4555332 222111 11234457899999999999999987432 34569999999999887
Q ss_pred EEcCCcCceeeecCeeecCCCeeEEEEEeeccee-------------------eeEEEEEccCCCc
Q psy9685 347 LQFNSTPESYNVGGVKLADGNNHLIQTISSTGIL-------------------DVQVLYLGGIPET 393 (979)
Q Consensus 347 ~~~g~~~~~~~~~~~~l~DG~wH~V~~~~~~~~l-------------------~l~vlyvGG~p~~ 393 (979)
+ +. ..+..+..+++||+||.+.+.-+...+ .|..||+||+|..
T Consensus 1603 v--~~--s~v~L~~~~vtdg~Wh~~~i~l~~d~~~t~d~g~~~aea~~gl~gl~l~sl~vGgap~~ 1664 (2531)
T KOG4289|consen 1603 V--GD--SSVELPAPRVTDGHWHHLVIELEADSVATLDYGIYQAEAKAGLSGLNLESLYVGGAPAT 1664 (2531)
T ss_pred e--cC--ceEEccCccccCCchhheeeeeccCeEEEEechhhhhhhhcCCCCceeeEEEEccccCC
Confidence 6 33 336678889999999999977664322 3334999999854
No 4
>KOG3516|consensus
Probab=100.00 E-value=6e-31 Score=303.71 Aligned_cols=258 Identities=20% Similarity=0.271 Sum_probs=186.3
Q ss_pred CeeEEEEeCccccccce-eeEEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCc-
Q psy9685 78 NSLVTVAVGGVARRAVR-NIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNST- 155 (979)
Q Consensus 78 ~s~~~~~~~~~~~~~~~-~~~~isl~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~- 155 (979)
.|++.+.+ .++.++ ..-.|+|.|||.++||+|||.. +.++|||.|+|++|+++|.+|+|+.
T Consensus 185 ~s~~~yr~---~~~~m~s~~d~is~~Fkt~~sdGvllh~e--------------g~QGd~itlql~~~kl~l~ld~G~~~ 247 (1306)
T KOG3516|consen 185 SSSLLYRF---HRKLMSSLKDVISLKFKTMQSDGVLLHGE--------------GQQGDYITLQLIGGKLVLILDLGNSK 247 (1306)
T ss_pred ccceeeec---cccccccccceeEEEEEeeccceeEEEcc--------------cCCCCEEEEEEeCCEEEEEEecCCcc
Confidence 56666666 333332 3458999999999999999954 3378999999999999999999943
Q ss_pred -----ceEEeecCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEecCcccccccc-eeEEcCCCCcccccccccCCC-c
Q psy9685 156 -----PESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGIPETVHHHRSIRSPY-Q 228 (979)
Q Consensus 156 -----~~~~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~l~~~-~lyvGG~p~~~~~~~~~~~~~-~ 228 (979)
...-++.+..|+|++||.|.|.|.++.+.|+||+........|....|+++ .+|+||+|.........+++- +
T Consensus 248 ~~~s~~~~sis~GslLdD~hWHsV~i~r~~~~vnftvD~~~~~fr~~Ge~~~Ldld~e~~~GGiP~~~~~~~~~~nF~GC 327 (1306)
T KOG3516|consen 248 LPSSRTPTSISAGSLLDDQHWHSVRIERQGRQVNFTVDGVVHHFRATGEFDALDLDTEISFGGIPNDGKSVGFEKNFTGC 327 (1306)
T ss_pred CccccCcceeecccccCCCcceEEEEEecCcEEEEEEccceEeecccCccceeecceEEEECCccCCCcccceeeeeeee
Confidence 233344678999999999999999999999999998888888999999999 999999998876544333332 2
Q ss_pred cCCCCCCCCccccCC------------CCeeeecCCCCCCCCcccccCcccccCCCcceeeEEEecCcchhccccceeEE
Q psy9685 229 PSRSYPSGGHCTDLW------------RDFSCSCVRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDI 296 (979)
Q Consensus 229 ~~~pc~~~G~C~~~~------------~~~~C~C~~~~~g~~C~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i 296 (979)
..+.+.|+-.=+++. -.|. |+.+.. .+.+|+. ..+++.++.. .....+.+
T Consensus 328 ienly~N~vdiidLa~~~~~~~~~~gnv~f~--C~~P~~--------~pvtF~~---sss~~~lpg~-----~~~~~l~v 389 (1306)
T KOG3516|consen 328 LENLYYNGVDIIDLAKRRKSQISAMGNVSFS--CSDPQI--------IPVTFGN---SSSYLRLPGN-----PNPDRLSV 389 (1306)
T ss_pred eeeeeecCceeEeeecccccceecccceeEe--ccCCCC--------CCeEecc---cceeEEcCCC-----CCCCceee
Confidence 333333332222221 1233 222222 2245554 2244554432 13456789
Q ss_pred EEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCeeEEEEEee
Q psy9685 297 SMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISS 376 (979)
Q Consensus 297 s~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~~~~~ 376 (979)
+|+|||...+|+|++. ...++...+.|.|++|++.+.+..-............||||+||.|.+..+
T Consensus 390 SF~FRtw~~~G~ll~~-------------~~~e~~g~v~~fl~eg~~~~~i~~~~r~~~~~~~g~~lnDG~WHsv~~~ak 456 (1306)
T KOG3516|consen 390 SFQFRTWNKTGLLLFS-------------ELKEGSGEVLLFLKEGKKFLQITQIGRSKADAYAGLKLNDGAWHSVSFNAK 456 (1306)
T ss_pred EEEEEeccccCceeee-------------eeccCCceEEEEEeCCeEEEEEeccccchhhhcccccCCCCceEEEEEEee
Confidence 9999999999999988 334466899999999998888754433332335678999999999999999
Q ss_pred cceeeeE
Q psy9685 377 TGILDVQ 383 (979)
Q Consensus 377 ~~~l~l~ 383 (979)
.+++.+.
T Consensus 457 ~n~~~~~ 463 (1306)
T KOG3516|consen 457 KNRLVLM 463 (1306)
T ss_pred cceeEEE
Confidence 9888664
No 5
>KOG3516|consensus
Probab=99.97 E-value=3e-29 Score=289.77 Aligned_cols=279 Identities=19% Similarity=0.311 Sum_probs=217.3
Q ss_pred cccccccccCCCeeEEEEeCccccccceeeEEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEe-CcE
Q psy9685 67 TAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEME-AGE 145 (979)
Q Consensus 67 ~a~~Fg~~~~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~-~G~ 145 (979)
.+++|.. ..|||.|+..... ...+|+|.|||..++|++|.+-+ ..|||.|+|. .-.
T Consensus 789 nsvSF~~---~~syL~fp~f~~~-----~saDIsf~FrTt~~~gvflen~g---------------~~dfir~eL~~~~~ 845 (1306)
T KOG3516|consen 789 NSVSFHT---GASYLHFPPFHNE-----LSADISFFFRTTASSGVFLENHG---------------INDFIRLELSSPVE 845 (1306)
T ss_pred cceEeec---CcceeecCcccCc-----ccccEEEEEEecCCceEeeeccC---------------CCceEEEEEcCCCc
Confidence 3778866 5789999986555 78899999999999999999875 7899999996 558
Q ss_pred EEEEEEeCCcceEEee-cCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEec--Ccccccccc-eeEEcCCCC-ccccc
Q psy9685 146 LFVRLQFNSTPESYNV-GGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTI--SSTGILDVQ-VLYLGGIPE-TVHHH 220 (979)
Q Consensus 146 l~~~~~~g~~~~~~~~-~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~--~~~~~l~~~-~lyvGG~p~-~~~~~ 220 (979)
+.|.|+.|+|+..+++ ++..+||++||+|.++|+.+..+|+||+......+. .....|.+. .+||||.-. .....
T Consensus 846 vtf~~dvgnGp~~~~V~s~t~~nD~qWH~V~~Ern~K~a~LqVD~~~~~~r~sp~~~~~~L~l~s~l~vGgt~~~~~gF~ 925 (1306)
T KOG3516|consen 846 VTFAFDVGNGPSQLTVRSPTELNDNQWHQVRAERNSKEASLQVDGLPKSIRTSPIPGTRLLQLYSSLFVGGTVSRQRGFL 925 (1306)
T ss_pred eEEEEEcCCCceeEEEcCCcccCCCceEEEEEEeccccceEEEcCcccceecCCCCCEEEEEeccceeccccccCcCcce
Confidence 8999999999888887 667999999999999999999999999986554432 455666666 999999432 22234
Q ss_pred ccccCCC-------------------------ccCCCCCCCCccccCCCCeeeecCC-CCCCCCcccccCcccccCCCcc
Q psy9685 221 RSIRSPY-------------------------QPSRSYPSGGHCTDLWRDFSCSCVR-PFLGHTCQYNFTAATFGHENTT 274 (979)
Q Consensus 221 ~~~~~~~-------------------------~~~~pc~~~G~C~~~~~~~~C~C~~-~~~g~~C~~~~~~~~f~~~~~~ 274 (979)
++||.+. +.+.+|.|||+|++.|++|.|+|.+ .|.|+.|..++... |...+..
T Consensus 926 GCIRsl~LNGv~ldLe~ra~~~~gv~~GC~GhCss~~C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~eig~~-fe~gs~i 1004 (1306)
T KOG3516|consen 926 GCIRSLQLNGVMLDLEYRAYGTAGVSPGCEGHCSSYPCLNGGHCVERYDGYTCDCSRTAYDGPFCSKEIGVF-FERGSSI 1004 (1306)
T ss_pred eeeeeeeecceeeeehhhhccCCcccCCCccccccccccCCCEEEEecCceeeccccCcCCCCccccccceE-ecCCceE
Confidence 4555332 2677999999999999999999999 99999999987653 3322223
Q ss_pred eeeEEEecCcc----------hhccccceeEEEEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEE-ecCEE
Q psy9685 275 NSLVTVAVGGV----------ARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEM-EAGEL 343 (979)
Q Consensus 275 ~~~~~~~~~~~----------~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l-~~G~l 343 (979)
.|.|.-+.... ..........|.|.|+|.+.-++|||++.- ..+|++|-+ .+|.|
T Consensus 1005 ~y~fq~~~~~a~~~~~~~~~~~~~~~~~~e~i~~sftTt~~ps~LLfvssF--------------~~~y~~V~v~~nGsL 1070 (1306)
T KOG3516|consen 1005 RYNFQKPMRSAVFESSRVKQKLEIEINPNEEINFSFTTTRAPSDLLFVSSF--------------TDDYLAVLVKDNGSL 1070 (1306)
T ss_pred EEeccchHHHhhhhhhhhhhccccccCccceEEEEEEeccCceEEEEeecc--------------ccceEEEEEeCCCce
Confidence 33222111100 011123456799999999999999999765 668999998 68999
Q ss_pred EEEEEcCC-cCceeeecCeeecCCCeeEEEEEeecceeeeE
Q psy9685 344 FVRLQFNS-TPESYNVGGVKLADGNNHLIQTISSTGILDVQ 383 (979)
Q Consensus 344 ~~~~~~g~-~~~~~~~~~~~l~DG~wH~V~~~~~~~~l~l~ 383 (979)
.++|.+|. .+..+......+.||+.|.|.+.|..+.+.++
T Consensus 1071 q~ry~lg~~e~~~~~~~~kn~~~gq~H~i~i~r~~~~~~i~ 1111 (1306)
T KOG3516|consen 1071 QTRYMLGFREPFEYQFKDKNIALGQPHDINITRGPRTVFLE 1111 (1306)
T ss_pred EEEEecCCcCceEEecccccccCCCceEEEEecCCceEEEE
Confidence 99999998 55556677889999999999999999876654
No 6
>KOG4289|consensus
Probab=99.97 E-value=4.2e-29 Score=287.22 Aligned_cols=383 Identities=20% Similarity=0.301 Sum_probs=237.5
Q ss_pred cCCCCCCCCccccCCCCeeeecCCCCCCCCcccccCc----------------------------------------ccc
Q psy9685 229 PSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQYNFTA----------------------------------------ATF 268 (979)
Q Consensus 229 ~~~pc~~~G~C~~~~~~~~C~C~~~~~g~~C~~~~~~----------------------------------------~~f 268 (979)
-++||.|+|+|....++|.|.|..+|+|..|+....+ .+|
T Consensus 1243 Ys~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~ge~e~prC~v~trSF 1322 (2531)
T KOG4289|consen 1243 YSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYGEFEDPRCEVTTRSF 1322 (2531)
T ss_pred hcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCCCcccCCCceEEEeecc
Confidence 5689999999999999999999999999999987211 111
Q ss_pred cCCCcceeeEEEecCcchhccccceeEEEEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEE
Q psy9685 269 GHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQ 348 (979)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~ 348 (979)
..++ ++.+ .....+..++++|.|.|.+.||||||.|+. +.||++|++.+++|+++|.
T Consensus 1323 p~~s----fv~f-----rglrqRfh~TlslsfaT~~~nGlL~ynGne--------------khDFvalevVd~qvqltfS 1379 (2531)
T KOG4289|consen 1323 PPES----FVTF-----RGLRQRFHFTLSLSFATIERNGLLLYNGNE--------------KHDFVALEVVDEQVQLTFS 1379 (2531)
T ss_pred Cchh----eEEE-----eccccceEEEEEEEEEEeeecceEEecCCc--------------ccceEeeeeeeeeEEEEEe
Confidence 1111 1111 111256678999999999999999999865 7899999999999999999
Q ss_pred cCCcCceee-ecCeeecCCCeeEEEEEeecceeeeEE-----------------------------------EEEccCCC
Q psy9685 349 FNSTPESYN-VGGVKLADGNNHLIQTISSTGILDVQV-----------------------------------LYLGGIPE 392 (979)
Q Consensus 349 ~g~~~~~~~-~~~~~l~DG~wH~V~~~~~~~~l~l~v-----------------------------------lyvGG~p~ 392 (979)
.|.....+. .....++||+||+|.+....+.+.+.+ |++||+|+
T Consensus 1380 ~Ges~t~v~p~Vp~gvsDGqWHtV~l~YyNK~av~svDdCdt~~al~fg~~gNCAa~g~q~~sKKsLDltgpLlLGGvPe 1459 (2531)
T KOG4289|consen 1380 AGESTTTVSPDVPGGVSDGQWHTVQLEYYNKVAVVSVDDCDTNVALRFGTIGNCAAQGTQTGSKKSLDLTGPLLLGGVPE 1459 (2531)
T ss_pred cccccceecCCCCCCcccCceeEEEEEEeceEEEEEeccccccceeeecCccchHhhhhccCcceeeeccCceeecCCCC
Confidence 996655333 336789999999999888776665532 99999997
Q ss_pred ccccc-ccccCCCCCCCCCCc---ccccccccccccccc------ccccccCCcc--------ccCCCCCcceeEeEEEE
Q psy9685 393 TVHHH-RSIRSPYQPSRSYPR---WATYDEMENYTTARR------RYSRQTAGEK--------QFSPLPNFKGIIHDVQI 454 (979)
Q Consensus 393 ~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~g~~--------~~~~~~~F~Gci~~v~i 454 (979)
..+.. +.|.|+.+.+.-.-. .+++..+--...||. +..+|.|||. .|+||.+|.|.-+.+..
T Consensus 1460 ~fpv~~k~FvGCmrdLsvD~~~VDma~fianngt~eGC~ark~fCdsg~C~n~g~CvnrWg~~~C~CP~~fggk~c~~~m 1539 (2531)
T KOG4289|consen 1460 TFPVIEKQFVGCMRDLSVDGRDVDMATFIANNGTHEGCKARKNFCDSGQCSNGGTCVNRWGGFSCECPLGFGGKGCCQGM 1539 (2531)
T ss_pred cchhhHhHhhhhhhhcccccccccHHHHHhhcCcccCchhhhcccCCCccCCCCeeecccCcEeecCccccCCcchhhcc
Confidence 64432 567776655421111 112222222223433 2578888887 99999999998877766
Q ss_pred E----------eecC--CCCccCCCCCCCCCccccchhccc---ccc-eEEEEeeeC-------CCceeeeecceeecCC
Q psy9685 455 Y----------FISG--SGDRSSPSSNGAGSEETSYIAAEM---EAG-ELFVRLQFN-------STPESYNVGGVKLADG 511 (979)
Q Consensus 455 ~----------~~~~--~~~~~lp~~~g~~~~rt~~~~~~~---~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~ 511 (979)
- +.-. ...+.+|+ -=.+-||||.+-..+ +++ +-.+++++. .....+.+....+.++
T Consensus 1540 ~~pq~frG~sl~sw~~~~~~vSvPw-ylsl~FRTr~ad~vl~~~~~~~rst~~lqld~g~l~~~v~~s~v~L~~~~vtdg 1618 (2531)
T KOG4289|consen 1540 AHPQHFRGHSLVSWEGLPSQVSVPW-YLSLMFRTRRADGVLMQAEFGGRSTYNLQLDDGTLKYNVGDSSVELPAPRVTDG 1618 (2531)
T ss_pred CCchhccccceeeecCCCcceecce-EEEEEEEeeccccEEEEEEeCCCceEEEEEcCCEEEEEecCceEEccCccccCC
Confidence 1 1001 00111121 001224888433222 222 111222221 2225577778888999
Q ss_pred CceEEEeCCCC-ceeeeecccccCe---------eEEEEecCcccccccccccccccccccccceeeeecccCCCCCCCC
Q psy9685 512 NNHLIQVGPGF-DFQRIDHPFTKKH---------VIVCVLNAHQLSGISDQADLVRCTSEAYLNLIIYISWLLSPHDSDP 581 (979)
Q Consensus 512 ~~~~~~~~~g~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~gC~~~~~~~~~~~~~~~~~~~~~~~ 581 (979)
.||.+++.=+. ....++..++... +....++.. .......+|.||+..++++..+-+.. .
T Consensus 1619 ~Wh~~~i~l~~d~~~t~d~g~~~aea~~gl~gl~l~sl~vGga--p~~g~p~gf~GCiqgV~v~g~~~l~~----~---- 1688 (2531)
T KOG4289|consen 1619 HWHHLVIELEADSVATLDYGIYQAEAKAGLSGLNLESLYVGGA--PATGVPRGFRGCIQGVRVGGVSILVP----K---- 1688 (2531)
T ss_pred chhheeeeeccCeEEEEechhhhhhhhcCCCCceeeEEEEccc--cCCCccccchhhhhceEECCEeeccc----c----
Confidence 99988874321 1111111111100 000111111 12245689999999999985543322 1
Q ss_pred CCCceEECCCCccCCCCCCCCCCCCCCCCCCCCeeccCCCceeeecCCCCCCCccccccccCCCCCCCCCCEEeeCC--C
Q psy9685 582 LTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRL--A 659 (979)
Q Consensus 582 ~~~~~C~C~~G~~g~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~--~ 659 (979)
.+-....|.+ +++|.... .|.|.+ | .| .+.|.-+||.+.|.|+..+ .
T Consensus 1689 ---------kv~~~~GCvv------pn~C~~d~---------sC~c~~-~---~C---~~vC~lnpc~~~g~Cv~sp~a~ 1737 (2531)
T KOG4289|consen 1689 ---------KVNVEAGCVV------PNPCSVDS---------SCPCDP-Y---NC---VDVCSLNPCENQGTCVRSPGAH 1737 (2531)
T ss_pred ---------ccccccCccc------CCccccCC---------cccCCC-C---Cc---cchhcccccccCceeecCCCCC
Confidence 1112223431 34454322 477776 3 45 4678899999999998654 5
Q ss_pred CcEEecCCCcccCcccc
Q psy9685 660 GFVCNCSEEYVGERCES 676 (979)
Q Consensus 660 ~~~C~C~~G~~G~~C~~ 676 (979)
+|.|.|++||+|++|+.
T Consensus 1738 GY~C~C~~g~~G~~Ce~ 1754 (2531)
T KOG4289|consen 1738 GYTCECPPGYTGPYCEL 1754 (2531)
T ss_pred ceeEECCCcccCcchhh
Confidence 79999999999999983
No 7
>KOG1219|consensus
Probab=99.97 E-value=8.6e-29 Score=293.44 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=97.4
Q ss_pred cCCCCCCCCccc-cCCC-CeeeecCCCCCCCCcccccCcccccCCCcceeeEEEecCcchhccccceeEEEEEEEeccCC
Q psy9685 229 PSRSYPSGGHCT-DLWR-DFSCSCVRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLR 306 (979)
Q Consensus 229 ~~~pc~~~G~C~-~~~~-~~~C~C~~~~~g~~C~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~frT~~~~ 306 (979)
...||..+-.|+ +.|+ .|.|.||.+ .-+.|+-. .+.++++.++ +....+.. ....+++.|++||.+++
T Consensus 3650 ~~~pcp~~~~Cvs~~~~~~~~cVcP~g-r~g~C~g~-~elS~tGnSY----veyrlse~----~n~~~kl~frLkT~~sn 3719 (4289)
T KOG1219|consen 3650 AKSPCPAGNLCVSSVHNSTYTCVCPIG-RFGFCQGD-FELSSTGNSY----VEYRLSEN----QNTRMKLGFRLKTLQSN 3719 (4289)
T ss_pred ccCCCcccCcccccccccceeEeccCc-ccccCCCc-ceEeecCcee----EEEEcccc----cccceEEEEEEEecccC
Confidence 456888888998 4454 489999987 33447654 3345555433 33322211 22237899999999999
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCeeEEEEEeecceeeeE
Q psy9685 307 GAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISSTGILDVQ 383 (979)
Q Consensus 307 GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~~~~~~~~l~l~ 383 (979)
|+|||.- ..+|..|.|.+|.+.+.++.|+|+.++...+..++||+||.|.+.+.++.+++.
T Consensus 3720 gIiM~tr----------------~~d~~iLkLv~G~~~l~~~cgsG~Givg~q~~~VnDgqWHsialerrr~~irls 3780 (4289)
T KOG1219|consen 3720 GIIMYTR----------------KTDLAILKLVGGSPQLLADCGSGPGIVGSQKRTVNDGQWHSIALERRRNHIRLS 3780 (4289)
T ss_pred cEEEEEc----------------CCceEEEEecCCcEEEEEecCCCCCcccccceEeecCceeEEEeeccCCceEEE
Confidence 9999994 359999999999999999999999755556699999999999999999888774
No 8
>KOG1219|consensus
Probab=99.91 E-value=6.1e-23 Score=244.54 Aligned_cols=95 Identities=37% Similarity=0.940 Sum_probs=90.7
Q ss_pred CCCceEECCCCccCCCCCCCCCCCCCCCCCCCCeeccCCCceeeecCCCCCCCccccc-cccCCCCCCCCCCEEeeCCCC
Q psy9685 582 LTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKE-IDECLSNPCMNGGQCEDRLAG 660 (979)
Q Consensus 582 ~~~~~C~C~~G~~g~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~-~~~C~~~~C~~~g~C~~~~~~ 660 (979)
.+.|.|.|++.|+|..|+.+...|..+||..+++|+...+.|.|.|+.||+|..|+.. +++|..++|.++|.|++..|+
T Consensus 3883 ~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~gs 3962 (4289)
T KOG1219|consen 3883 KGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGISECSKNVCGTGGQCINIPGS 3962 (4289)
T ss_pred CCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeecccccccccccccCCceeeccCCc
Confidence 3569999999999999999999999999999999999999999999999999999988 899999999999999999999
Q ss_pred cEEecCCCcccCcccc
Q psy9685 661 FVCNCSEEYVGERCES 676 (979)
Q Consensus 661 ~~C~C~~G~~G~~C~~ 676 (979)
|.|.|.+||.|..|..
T Consensus 3963 f~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3963 FHCNCTPGILGRTCCA 3978 (4289)
T ss_pred eEeccChhHhcccCcc
Confidence 9999999999999853
No 9
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=99.79 E-value=1.5e-18 Score=164.85 Aligned_cols=98 Identities=34% Similarity=0.552 Sum_probs=82.4
Q ss_pred EEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCcceEEeecCeeecCCCcEEEEEEEEceE
Q psy9685 103 IRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRNVTL 182 (979)
Q Consensus 103 FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~~~~~~~~~~~lnDg~WH~V~v~r~~~~ 182 (979)
|||.+++|||||.+.. ...|||+|+|.+|+|+|+|++|+++..+... .+++||+||+|++.|+.+.
T Consensus 1 frT~~~~Gllly~g~~-------------~~~dfial~L~~G~l~~~~~~G~~~~~~~~~-~~i~dg~wh~v~~~r~~~~ 66 (131)
T PF00054_consen 1 FRTSEPNGLLLYLGSK-------------DGKDFIALELRDGRLEFRYNLGSGPASLRSP-QKINDGKWHTVSVSRNGRN 66 (131)
T ss_dssp EEESSSSEEEEEEESS-------------TTSSEEEEEEETTEEEEEEESSSEEEEEEES-SETTSSSEEEEEEEEETTE
T ss_pred CccCCCCceEEECCcC-------------CCCCEEEEEEECCEEEEEEeCCCccceecCC-CccCCCcceEEEEEEcCcE
Confidence 8999999999999852 1449999999999999999999996655555 4699999999999999999
Q ss_pred EEEEECCEEe-EEEecCcccc-cccc-eeEEcCCC
Q psy9685 183 VQVKLNGTEY-FRKTISSTGI-LDVQ-VLYLGGIP 214 (979)
Q Consensus 183 ~~L~VD~~~~-~~~~~~~~~~-l~~~-~lyvGG~p 214 (979)
+.|+||+... ....+..... ++.. +|||||+|
T Consensus 67 ~~L~Vd~~~~~~~~s~~~~~~~l~~~~~lyvGG~p 101 (131)
T PF00054_consen 67 GSLSVDGEEVVTGESPSGATQSLDVDGPLYVGGLP 101 (131)
T ss_dssp EEEEETTSEEEEEEECSSSSSSCEECSEEEESSSS
T ss_pred EEEEECCccceeeecCCccccccccccCEEEccCC
Confidence 9999999876 3444544444 6666 89999999
No 10
>KOG1226|consensus
Probab=99.74 E-value=1.1e-17 Score=188.53 Aligned_cols=266 Identities=21% Similarity=0.400 Sum_probs=155.3
Q ss_pred CCCCCCCEEeeCCCCcEEecCCCcccCccccccc--------cccCC----CCCCCCceecCCCCCCCCCCCCeecCCCC
Q psy9685 646 NPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQ--------ISCAD----QPCYFGAVCQDTKISPYFPQGPICDCPPG 713 (979)
Q Consensus 646 ~~C~~~g~C~~~~~~~~C~C~~G~~G~~C~~~~~--------~~c~~----~~C~~~~~C~~~~~~~~~~~~~~C~C~~G 713 (979)
..|+.+|+++.. .|.|.+||.|++|++... ..|.. .+|++.|.|..+ +|.|.+.
T Consensus 467 ~~C~g~G~~~CG----~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----------qC~C~~~ 532 (783)
T KOG1226|consen 467 ALCHGNGTFVCG----QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----------QCVCHKP 532 (783)
T ss_pred cccCCCCcEEec----ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----------ceEecCC
Confidence 346666777666 788899999888886431 12321 268888888765 7999877
Q ss_pred CC----CCCccccCCCCCCC---CCCCCceEecCCCCeEEecCCCCcCCCCccccccccCCCCCCccccccCCCcCCCCC
Q psy9685 714 YR----GSRCEINIDECASG---PCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSC 786 (979)
Q Consensus 714 ~~----G~~C~~~~~~C~~~---~C~~~g~C~~~~g~~~C~C~~g~~g~~~~c~~~~~~~~~~~~~~~~~~~g~~~~~~C 786 (979)
.. |..|+.|.-.|... .|+++|.|... +|+|.+||+|..|.|... ...|..+++-.|
T Consensus 533 ~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~~GwtG~~C~C~~s--td~C~~~~G~iC---------- 596 (783)
T KOG1226|consen 533 DNGKIYGKFCECDNFSCERHKGVLCGGHGRCECG----RCVCNPGWTGSACNCPLS--TDTCESSDGQIC---------- 596 (783)
T ss_pred CCCceeeeeeeccCcccccccCcccCCCCeEeCC----cEEcCCCCccCCCCCCCC--CccccCCCCcee----------
Confidence 76 99999777778654 49999999876 799999999999876411 001111111000
Q ss_pred CCCcCCCCCCCCCCCCCCCCCccccCCCC-cCCCCccccCcccccCCCCCCCCeeeccCCCCeee-cCCCCCCCCCCCCC
Q psy9685 787 PECFSLDSGPGGPGLADSGPGVQTTPILG-YTGEMCEIDINECELSSDMCGNNGECINQPGDYKC-ACQFDTCGYLCNFP 864 (979)
Q Consensus 787 ~~C~~~~~~~~~~~~~~~~~~~~C~C~~g-~~G~~C~~~~~~C~~~~~~C~~~g~C~~~~gs~~C-~C~~g~~G~~C~~~ 864 (979)
+-. | ......|.|... |.|..|++ |......|..+..|+ +| .+..|+.+..|..
T Consensus 597 ---SGr-----G-----~C~Cg~C~C~~~~~sG~~CE~----cptc~~~C~~~~~Cv------eC~~~~~g~~~~~C~~- 652 (783)
T KOG1226|consen 597 ---SGR-----G-----TCECGRCKCTDPPYSGEFCEK----CPTCPDPCAENKSCV------ECQAFETGPVGDTCVE- 652 (783)
T ss_pred ---CCC-----c-----eeeCCceEcCCCCcCcchhhc----CCCCCCcccccccch------hhcccccccccchHHH-
Confidence 000 0 001234555544 77777763 222234566666665 33 2344555555542
Q ss_pred CCCCCC--------CCCCCC--eeecCCCCCCCeEeecCCCCC----CCCC-CcCCCcCCCcccccchhhhhhhHHHHHH
Q psy9685 865 DPCKDE--------PCQNGG--TCHEDCRHQADYKCDCLPGWT----GKNC-TEVPEYLPSRVVDLALLIIGPILAILLL 929 (979)
Q Consensus 865 ~~C~~~--------~C~~~g--~C~~~c~~~~~~~C~C~~G~~----G~~C-~~~~~~~~~~~~~~~~~~~~~~~~~lll 929 (979)
.|... +=.... .|. ......|.=.--|. |..= -+..+.+......++.++++.+++++||
T Consensus 653 -~C~~~~~~~v~~~~~~~~~~~~C~----~~~~~dc~~~f~y~~~~~g~~~l~v~~~~~cp~~~~~~~i~lgvv~~ivli 727 (783)
T KOG1226|consen 653 -ECSSFVVTLVEELPVLDDEVVHCK----ERDEDDCWFFFTYSDDASGKSTLHVREEKECPPGPNILAIVLGVVAGIVLI 727 (783)
T ss_pred -HhhhhcchhhccccccCCccceee----eecCCCcEEEEEEEecCCCcEEEEEEecccCCCCCcEeeehHHHHHHHHHH
Confidence 22100 000000 111 01111121111111 1100 0011223344556677788888999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCccccCCceee-cccCCCC
Q psy9685 930 GGLISMAVLCLMARQKRGRRGTYSPSSQEYCNPRVEM-NNVLKPP 973 (979)
Q Consensus 930 ~~l~~~~~~~~~~r~~r~~~~~~~~~~~e~~~~~~~~-~~~~~~~ 973 (979)
+++++++|++++.+++|+ +|.++..|+.+++|++ ++++|.+
T Consensus 728 gl~llliwkll~~~~Drr---E~akFe~er~~a~w~~~nPlyk~~ 769 (783)
T KOG1226|consen 728 GLALLLIWKLLTTIHDRR---EFAKFEKERLNAKWDTANPLYKSA 769 (783)
T ss_pred HHHHHHHHHHhheecccH---HhhhhhHHHHhhhhccCCCceecC
Confidence 999999999998888877 8888899999999877 7777654
No 11
>smart00282 LamG Laminin G domain.
Probab=99.70 E-value=1.9e-16 Score=152.12 Aligned_cols=109 Identities=30% Similarity=0.511 Sum_probs=90.3
Q ss_pred eEEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCcceEEeecCeeecCCCcEEEE
Q psy9685 96 IVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQ 175 (979)
Q Consensus 96 ~~~isl~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~~~~~~~~~~~lnDg~WH~V~ 175 (979)
.++|+|.|||.+++|+|||+++. ...+|++|+|.+|++++.++.|+++..+.....+++||+||+|.
T Consensus 2 ~~~i~~~frt~~~~g~l~~~~~~-------------~~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~WH~v~ 68 (135)
T smart00282 2 RLSISFSFRTTSPNGLLLYAGSK-------------NGGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDGQWHRVA 68 (135)
T ss_pred ceEEEEEEEeCCCCEEEEEeCCC-------------CCCCEEEEEEECCEEEEEEECCCCCEEEEECCeEeCCCCEEEEE
Confidence 46899999999999999998741 25689999999999999999998866555555899999999999
Q ss_pred EEEEceEEEEEECCEEe-EEEecCcccccccc-eeEEcCCCCcc
Q psy9685 176 VVRNVTLVQVKLNGTEY-FRKTISSTGILDVQ-VLYLGGIPETV 217 (979)
Q Consensus 176 v~r~~~~~~L~VD~~~~-~~~~~~~~~~l~~~-~lyvGG~p~~~ 217 (979)
|.|+++.++|+||+... ....++....++.. .+||||+|...
T Consensus 69 i~~~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~l~iGG~p~~~ 112 (135)
T smart00282 69 VERNGRRVTLSVDGENPVSGESPGGLTILNLDGPLYLGGLPEDL 112 (135)
T ss_pred EEEeCCEEEEEECCCccccEECCCCceEEecCCCcEEccCCchh
Confidence 99999999999999643 23334444566665 99999999764
No 12
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=99.69 E-value=3.1e-16 Score=148.99 Aligned_cols=78 Identities=32% Similarity=0.560 Sum_probs=67.1
Q ss_pred EEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCeeEEEEEeecce
Q psy9685 300 IRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISSTGI 379 (979)
Q Consensus 300 frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~~~~~~~~ 379 (979)
|||.+++|||||.+... ..||++|+|.+|+|+++|++|+++..+..+. .++||+||+|.+.|..+.
T Consensus 1 frT~~~~Gllly~g~~~-------------~~dfial~L~~G~l~~~~~~G~~~~~~~~~~-~i~dg~wh~v~~~r~~~~ 66 (131)
T PF00054_consen 1 FRTSEPNGLLLYLGSKD-------------GKDFIALELRDGRLEFRYNLGSGPASLRSPQ-KINDGKWHTVSVSRNGRN 66 (131)
T ss_dssp EEESSSSEEEEEEESST-------------TSSEEEEEEETTEEEEEEESSSEEEEEEESS-ETTSSSEEEEEEEEETTE
T ss_pred CccCCCCceEEECCcCC-------------CCCEEEEEEECCEEEEEEeCCCccceecCCC-ccCCCcceEEEEEEcCcE
Confidence 89999999999998752 4499999999999999999999966554444 599999999999998887
Q ss_pred eeeEE-----------------------EEEccCC
Q psy9685 380 LDVQV-----------------------LYLGGIP 391 (979)
Q Consensus 380 l~l~v-----------------------lyvGG~p 391 (979)
+.|.+ |||||+|
T Consensus 67 ~~L~Vd~~~~~~~~s~~~~~~~l~~~~~lyvGG~p 101 (131)
T PF00054_consen 67 GSLSVDGEEVVTGESPSGATQSLDVDGPLYVGGLP 101 (131)
T ss_dssp EEEEETTSEEEEEEECSSSSSSCEECSEEEESSSS
T ss_pred EEEEECCccceeeecCCccccccccccCEEEccCC
Confidence 76643 9999999
No 13
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=99.66 E-value=1.7e-15 Score=148.80 Aligned_cols=122 Identities=28% Similarity=0.471 Sum_probs=95.3
Q ss_pred CeeEEEEeCccccccceeeEEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCcce
Q psy9685 78 NSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157 (979)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~~~ 157 (979)
++|+.++.+... ...++|+|.|||.+++|+|||.++. ...+|++|+|.+|++++.++.|....
T Consensus 7 ~~~i~~~~~~~~----~~~~~i~~~frt~~~~g~l~~~~~~-------------~~~~~~~l~l~~g~l~~~~~~g~~~~ 69 (151)
T cd00110 7 SSYVRLPTLPAP----RTRLSISFSFRTTSPNGLLLYAGSQ-------------NGGDFLALELEDGRLVLRYDLGSGSL 69 (151)
T ss_pred CceEEecCCCCC----cceeEEEEEEEeCCCCeEEEEecCC-------------CCCCEEEEEEECCEEEEEEcCCcccE
Confidence 499999985443 4789999999999999999998851 14799999999999999999985544
Q ss_pred EEeecCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEec-Ccccccccc-eeEEcCCCCcc
Q psy9685 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTI-SSTGILDVQ-VLYLGGIPETV 217 (979)
Q Consensus 158 ~~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~-~~~~~l~~~-~lyvGG~p~~~ 217 (979)
.+... .+++||+||+|.|.+.++.++|+||+........ .....++.. .+||||+|...
T Consensus 70 ~~~~~-~~v~dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~~~~ 130 (151)
T cd00110 70 VLSSK-TPLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLPEDL 130 (151)
T ss_pred EEEcc-CccCCCCEEEEEEEECCCEEEEEECCccEEeeeCCCCceeecCCCCeEEcCCCCch
Confidence 43333 3899999999999999999999999974333322 222133444 99999999764
No 14
>smart00282 LamG Laminin G domain.
Probab=99.65 E-value=2.3e-15 Score=144.56 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=66.3
Q ss_pred eeEEEEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCeeEEE
Q psy9685 293 IVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQ 372 (979)
Q Consensus 293 ~~~is~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~ 372 (979)
.++|+|.|||.+++|+|||.+.. ...+|++|+|.+|+|.+.++.|++...+......++||+||+|.
T Consensus 2 ~~~i~~~frt~~~~g~l~~~~~~-------------~~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~WH~v~ 68 (135)
T smart00282 2 RLSISFSFRTTSPNGLLLYAGSK-------------NGGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDGQWHRVA 68 (135)
T ss_pred ceEEEEEEEeCCCCEEEEEeCCC-------------CCCCEEEEEEECCEEEEEEECCCCCEEEEECCeEeCCCCEEEEE
Confidence 46799999999999999999652 15689999999999999999998776555555899999999999
Q ss_pred EEeecceeeeE
Q psy9685 373 TISSTGILDVQ 383 (979)
Q Consensus 373 ~~~~~~~l~l~ 383 (979)
+.+..+.+.|.
T Consensus 69 i~~~~~~~~l~ 79 (135)
T smart00282 69 VERNGRRVTLS 79 (135)
T ss_pred EEEeCCEEEEE
Confidence 99988876553
No 15
>KOG1214|consensus
Probab=99.59 E-value=4.6e-13 Score=150.08 Aligned_cols=147 Identities=28% Similarity=0.794 Sum_probs=108.9
Q ss_pred CCCCCCeeccCCC-ceeeecCCCCCC--CccccccccCCCC--CCCCCCEEeeCCCCcEEecCCCcc----cCcccccc-
Q psy9685 609 NCQNGARCIDGVA-RYSCECTPGWEG--ALCEKEIDECLSN--PCMNGGQCEDRLAGFVCNCSEEYV----GERCESLR- 678 (979)
Q Consensus 609 ~C~~~~~C~~~~g-~~~C~C~~G~~G--~~C~~~~~~C~~~--~C~~~g~C~~~~~~~~C~C~~G~~----G~~C~~~~- 678 (979)
-|..+..|....+ .|+|.|..||.| ..|. +.++|... .|..+..|++.+++|.|.|..||. +-.|-...
T Consensus 701 ~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~ 779 (1289)
T KOG1214|consen 701 MCDTTARCHPGTGVDYTCECSSGYQGDGRNCV-DENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITP 779 (1289)
T ss_pred ccCCCccccCCCCcceEEEEeeccCCCCCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecC
Confidence 3555556665544 589999999975 4664 56678753 499999999999999999999886 33454321
Q ss_pred ---ccccCC--CCCCCC--ceecCCCCCCCCCCCCeecCCCCCCCC--CccccCCCCCCCCCCCCceEecCCCCeEEecC
Q psy9685 679 ---QISCAD--QPCYFG--AVCQDTKISPYFPQGPICDCPPGYRGS--RCEINIDECASGPCKNSGQCIDDVNAFICNCT 749 (979)
Q Consensus 679 ---~~~c~~--~~C~~~--~~C~~~~~~~~~~~~~~C~C~~G~~G~--~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~ 749 (979)
...|.. +.|.-. ..|+..+ .+.|.|.|.|||.|+ .|. |+|+|..+-|...++|.++.|++.|+|.
T Consensus 780 pap~n~Ce~g~h~C~i~g~a~c~~hG-----gs~y~C~CLPGfsGDG~~c~-dvDeC~psrChp~A~CyntpgsfsC~C~ 853 (1289)
T KOG1214|consen 780 PAPANPCEDGSHTCAIAGQARCVHHG-----GSTYSCACLPGFSGDGHQCT-DVDECSPSRCHPAATCYNTPGSFSCRCQ 853 (1289)
T ss_pred CCCCCccccCccccCcCCceEEEecC-----CceEEEeecCCccCCccccc-cccccCccccCCCceEecCCCcceeecc
Confidence 112322 345443 4455554 457899999999954 675 7899999899999999999999999999
Q ss_pred CCCcCCCCccccc
Q psy9685 750 NTATGASMGCLGE 762 (979)
Q Consensus 750 ~g~~g~~~~c~~~ 762 (979)
+||.|.+..|.+.
T Consensus 854 pGy~GDGf~CVP~ 866 (1289)
T KOG1214|consen 854 PGYYGDGFQCVPD 866 (1289)
T ss_pred cCccCCCceecCC
Confidence 9999998877543
No 16
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=99.57 E-value=3.7e-14 Score=134.85 Aligned_cols=103 Identities=26% Similarity=0.531 Sum_probs=85.7
Q ss_pred EEeCCCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCcceEEeecCeeecCCCcEEEEEEEEceE
Q psy9685 103 IRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRNVTL 182 (979)
Q Consensus 103 FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~~~~~~~~~~~lnDg~WH~V~v~r~~~~ 182 (979)
|||++++|+|||.++. . ..+|++|+|.+|+|++.+++|+...........++||+||+|.+.|..+.
T Consensus 1 Frt~~~~g~Ll~~~~~------------~-~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~wh~v~i~~~~~~ 67 (128)
T PF02210_consen 1 FRTRSPNGLLLYIGSE------------D-NGDFLSLELVDGRLVVRYNLGGSEIVTTFSNSNLNDGQWHKVSISRDGNR 67 (128)
T ss_dssp EEESSSSEEEEEEEES------------T-TSEEEEEEEETTEEEEEEESSSSEEEEEECSSSSTSSSEEEEEEEEETTE
T ss_pred CccCCCCEeEEEEcCC------------C-CCEEEEEEEECCEEEEEEEccccceeeeccCccccccceeEEEEEEeeee
Confidence 8999999999999862 1 25799999999999999999966566666778999999999999999999
Q ss_pred EEEEECCEEeEEEecCccc--ccccc-eeEEcCCCCccc
Q psy9685 183 VQVKLNGTEYFRKTISSTG--ILDVQ-VLYLGGIPETVH 218 (979)
Q Consensus 183 ~~L~VD~~~~~~~~~~~~~--~l~~~-~lyvGG~p~~~~ 218 (979)
++|.||+............ .++.. .+||||+|....
T Consensus 68 ~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~~~~~ 106 (128)
T PF02210_consen 68 VTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLPESNQ 106 (128)
T ss_dssp EEEEETTSEEEEEESSSTTHHCBESEEEEEESSTTTTCT
T ss_pred EEEEecCccceEEeccccceecccCCCCEEEecccCccc
Confidence 9999999877666553332 55555 899999998753
No 17
>KOG1217|consensus
Probab=99.54 E-value=2.1e-13 Score=161.46 Aligned_cols=270 Identities=39% Similarity=0.951 Sum_probs=200.8
Q ss_pred CCCCCceEECCCCccCCCCCCCCCCCCCCC--CCCCCeeccC---CCceeeecCCCCCCCccccccccCC--CCCCCCCC
Q psy9685 580 DPLTSYACKCPAGYSSETCAVDIDECVTHN--CQNGARCIDG---VARYSCECTPGWEGALCEKEIDECL--SNPCMNGG 652 (979)
Q Consensus 580 ~~~~~~~C~C~~G~~g~~C~~~~~~C~~~~--C~~~~~C~~~---~g~~~C~C~~G~~G~~C~~~~~~C~--~~~C~~~g 652 (979)
.....+.|.|.+||.+..|.... .|...+ +...+.|... ...+.|.|..||.+..|....++|. ..+|.+++
T Consensus 105 ~~~~~~~c~c~~g~~~~~~~~~~-~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~ 183 (487)
T KOG1217|consen 105 DCVGSYECTCPPGYQGTPCEGEC-ECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGG 183 (487)
T ss_pred CCCCCceeeCCCccccCcCCcce-eecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCcCCCc
Confidence 46778999999999999886321 466555 2455567654 3578999999999999986667887 34599999
Q ss_pred EEeeCCCCcEEecCCCcccCccccccccccCCCCCCCCceecCCCCCCCCCCCCeecCCCCCCCCCccccCCCCCCCCCC
Q psy9685 653 QCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCK 732 (979)
Q Consensus 653 ~C~~~~~~~~C~C~~G~~G~~C~~~~~~~c~~~~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~G~~C~~~~~~C~~~~C~ 732 (979)
.|.+..++|.|.|+++|.+..|+.. ..++.|... ..|.|.+|+.+..|+..+.+|...
T Consensus 184 ~C~~~~~~~~C~c~~~~~~~~~~~~----------~~~~~c~~~---------~~~~~~~g~~~~~c~~~~~~~~~~--- 241 (487)
T KOG1217|consen 184 TCVNTGGSYLCSCPPGYTGSTCETT----------GNGGTCVDS---------VACSCPPGARGPECEVSIVECASG--- 241 (487)
T ss_pred ccccCCCCeeEeCCCCccCCcCcCC----------CCCceEecc---------eeccCCCCCCCCCcccccccccCC---
Confidence 9999999999999999999988742 334555432 368899999999998777777665
Q ss_pred CCceEecCCCCeEEecCCCCcCCCC-ccccccccCCCCCCccccccCCCcCCCCCCCCcCCCCCCCCCCCCCCCCCcccc
Q psy9685 733 NSGQCIDDVNAFICNCTNTATGASM-GCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTT 811 (979)
Q Consensus 733 ~~g~C~~~~g~~~C~C~~g~~g~~~-~c~~~~~~~~~~~~~~~~~~~g~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~C~ 811 (979)
. +.|.+..++|+|.|++||.+..+ .|. .. ..|.....+..+..+......+.|.
T Consensus 242 ~-~~c~~~~~~~~C~~~~g~~~~~~~~~~---------------------~~---~~C~~~~~c~~~~~C~~~~~~~~C~ 296 (487)
T KOG1217|consen 242 D-GTCVNTVGSYTCRCPEGYTGDACVTCV---------------------DV---DSCALIASCPNGGTCVNVPGSYRCT 296 (487)
T ss_pred C-CcccccCCceeeeCCCCccccccceee---------------------ec---cccCCCCccCCCCeeecCCCcceee
Confidence 5 89999999999999999998762 110 01 1222221122222233333348899
Q ss_pred CCCCcCCCCc--cccCccccc--CCCCCCCCeee--ccCCCCeeecCCCCCCCCCCCCC-CCCCCCCCCCCCeeecCCCC
Q psy9685 812 PILGYTGEMC--EIDINECEL--SSDMCGNNGEC--INQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQNGGTCHEDCRH 884 (979)
Q Consensus 812 C~~g~~G~~C--~~~~~~C~~--~~~~C~~~g~C--~~~~gs~~C~C~~g~~G~~C~~~-~~C~~~~C~~~g~C~~~c~~ 884 (979)
|.+||.|..| ..+..+|.. ....|.++++| ....+.+.|.|..+|.|..|+.. ++|...+|.+++.|... .
T Consensus 297 C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~--~ 374 (487)
T KOG1217|consen 297 CPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDSNDECASSPCCPGGTCVNE--T 374 (487)
T ss_pred CCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccCCccccCCccccCCEeccC--C
Confidence 9999999998 224467752 35568888889 34456788999999999999987 49998889999999942 4
Q ss_pred CCCeEeecCCCCCCC
Q psy9685 885 QADYKCDCLPGWTGK 899 (979)
Q Consensus 885 ~~~~~C~C~~G~~G~ 899 (979)
.+.+.|.|..+|.+.
T Consensus 375 ~~~~~c~~~~~~~~~ 389 (487)
T KOG1217|consen 375 PGSYRCACPAGFAGK 389 (487)
T ss_pred CCCeEecCCCccccC
Confidence 678999999999874
No 18
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=99.53 E-value=1.6e-13 Score=134.66 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=64.4
Q ss_pred cceeEEEEEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCeeE
Q psy9685 291 RNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHL 370 (979)
Q Consensus 291 ~~~~~is~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~ 370 (979)
...++|+|+|||.+++|+|||.+... ..+|++|+|++|+|.+.++.|.... .......++||+||+
T Consensus 19 ~~~~~i~~~frt~~~~g~l~~~~~~~-------------~~~~~~l~l~~g~l~~~~~~g~~~~-~~~~~~~v~dg~Wh~ 84 (151)
T cd00110 19 RTRLSISFSFRTTSPNGLLLYAGSQN-------------GGDFLALELEDGRLVLRYDLGSGSL-VLSSKTPLNDGQWHS 84 (151)
T ss_pred cceeEEEEEEEeCCCCeEEEEecCCC-------------CCCEEEEEEECCEEEEEEcCCcccE-EEEccCccCCCCEEE
Confidence 56789999999999999999997631 4699999999999999999985444 333344899999999
Q ss_pred EEEEeecceeee
Q psy9685 371 IQTISSTGILDV 382 (979)
Q Consensus 371 V~~~~~~~~l~l 382 (979)
|.+.+..+.+.|
T Consensus 85 v~i~~~~~~~~l 96 (151)
T cd00110 85 VSVERNGRSVTL 96 (151)
T ss_pred EEEEECCCEEEE
Confidence 999998877644
No 19
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=99.52 E-value=1.6e-13 Score=130.50 Aligned_cols=82 Identities=27% Similarity=0.541 Sum_probs=71.3
Q ss_pred EEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCeeEEEEEeecce
Q psy9685 300 IRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISSTGI 379 (979)
Q Consensus 300 frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~~~~~~~~ 379 (979)
|||++++|+|||.+... ..+|++|+|.+|+|++.+++|............++||+||+|.+.+..+.
T Consensus 1 Frt~~~~g~Ll~~~~~~-------------~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~wh~v~i~~~~~~ 67 (128)
T PF02210_consen 1 FRTRSPNGLLLYIGSED-------------NGDFLSLELVDGRLVVRYNLGGSEIVTTFSNSNLNDGQWHKVSISRDGNR 67 (128)
T ss_dssp EEESSSSEEEEEEEEST-------------TSEEEEEEEETTEEEEEEESSSSEEEEEECSSSSTSSSEEEEEEEEETTE
T ss_pred CccCCCCEeEEEEcCCC-------------CCEEEEEEEECCEEEEEEEccccceeeeccCccccccceeEEEEEEeeee
Confidence 89999999999997751 25899999999999999999966666667888999999999999999998
Q ss_pred eeeEE-----------------------EEEccCCCcc
Q psy9685 380 LDVQV-----------------------LYLGGIPETV 394 (979)
Q Consensus 380 l~l~v-----------------------lyvGG~p~~~ 394 (979)
+.|.+ +||||+|...
T Consensus 68 ~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~~~~ 105 (128)
T PF02210_consen 68 VTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLPESN 105 (128)
T ss_dssp EEEEETTSEEEEEESSSTTHHCBESEEEEEESSTTTTC
T ss_pred EEEEecCccceEEeccccceecccCCCCEEEecccCcc
Confidence 87753 8999998773
No 20
>KOG0994|consensus
Probab=99.42 E-value=2.8e-12 Score=148.01 Aligned_cols=298 Identities=26% Similarity=0.566 Sum_probs=164.5
Q ss_pred CCCCceEECCCCccCCCCCC--------CCCCCCCCCCCCCC----eeccCCCceeeecCCCCCCCcccc------cccc
Q psy9685 581 PLTSYACKCPAGYSSETCAV--------DIDECVTHNCQNGA----RCIDGVARYSCECTPGWEGALCEK------EIDE 642 (979)
Q Consensus 581 ~~~~~~C~C~~G~~g~~C~~--------~~~~C~~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~C~~------~~~~ 642 (979)
..+...|.|+|+-.|..|+. ....|....|..-| .|....| .|.|.+|-+|..|.. ...+
T Consensus 778 n~~GGqCqCkPnVVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tG--QC~C~~g~ygrqCnqCqpG~WgFPe 855 (1758)
T KOG0994|consen 778 NPNGGQCQCKPNVVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITG--QCQCRPGTYGRQCNQCQPGYWGFPE 855 (1758)
T ss_pred cCCCceecccCccccccccccCCcccCcCCccCcccccccccccccccccccc--ceeeccccchhhccccCCCccCCCc
Confidence 35678999999999998853 22334444443322 3433333 466666666665532 1233
Q ss_pred CCCCCCCCC--------CE---EeeCCCCcEE-ecCCCcccCccccccccccCCCCCCCC--------ceecCCCCCCCC
Q psy9685 643 CLSNPCMNG--------GQ---CEDRLAGFVC-NCSEEYVGERCESLRQISCADQPCYFG--------AVCQDTKISPYF 702 (979)
Q Consensus 643 C~~~~C~~~--------g~---C~~~~~~~~C-~C~~G~~G~~C~~~~~~~c~~~~C~~~--------~~C~~~~~~~~~ 702 (979)
|....|..+ |. |.+.+.++.| .|..||.|+-=-. ....|.+-+|..+ ..|.-.. .
T Consensus 856 Cr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg-~g~~CrPCpCP~gp~Sg~~~A~sC~~d~----~ 930 (1758)
T KOG0994|consen 856 CRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLG-SGIGCRPCPCPDGPASGRQHADSCYLDT----R 930 (1758)
T ss_pred CccccccCcccccCccccccccccccccccchhhhhccccCCcccC-CCCCCCCCCCCCCCccchhccccccccc----c
Confidence 333333222 23 3455566778 6889998642110 1122333344322 2332211 1
Q ss_pred CCCCeecCCCCCCCCCccccCCCCCCCC---CCCCceEecCCCCeEEecCCCCcCCCC-ccccccccCCCC------CCc
Q psy9685 703 PQGPICDCPPGYRGSRCEINIDECASGP---CKNSGQCIDDVNAFICNCTNTATGASM-GCLGEVRLGDLL------LPY 772 (979)
Q Consensus 703 ~~~~~C~C~~G~~G~~C~~~~~~C~~~~---C~~~g~C~~~~g~~~C~C~~g~~g~~~-~c~~~~~~~~~~------~~~ 772 (979)
...-.|.|++||.|.+|+ .|+.+. =..+|+|. .|.|...-...+- .|- ..-|.|+ .-.
T Consensus 931 t~~ivC~C~~GY~G~RCe----~CA~~~fGnP~~GGtCq------~CeC~~NiD~~d~~aCD--~~TG~CLkCL~hTeG~ 998 (1758)
T KOG0994|consen 931 TQQIVCHCQEGYSGSRCE----ICADNHFGNPSEGGTCQ------KCECSNNIDLYDPGACD--VATGACLKCLYHTEGD 998 (1758)
T ss_pred ccceeeecccCccccchh----hhcccccCCcccCCccc------cccccCCcCccCCCccc--hhhchhhhhhhccccc
Confidence 234579999999999997 455331 12256664 4666432111100 000 0000000 000
Q ss_pred c-ccccCCCcCC---CCCCCCcCCCCCCCCCCCCCCCCCccccCCCCcCCCCccccC---------cccccCCCCCCC--
Q psy9685 773 F-TWEQLGYTDT---LSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDI---------NECELSSDMCGN-- 837 (979)
Q Consensus 773 ~-~~~~~g~~~~---~~C~~C~~~~~~~~~~~~~~~~~~~~C~C~~g~~G~~C~~~~---------~~C~~~~~~C~~-- 837 (979)
. -.|..||.+. ..|..|.+...+.+.. +.....+.+|.|.+...|..|+.-- ..|. +..|+.
T Consensus 999 hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn~~-~~CDr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe--~C~Cd~~~ 1075 (1758)
T KOG0994|consen 999 HCEHCKDGFYGDALRQNCQRCVCNFLGTNST-CHCDRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCE--PCNCDPIG 1075 (1758)
T ss_pred chhhccccchhHHHHhhhhhheccccccCCc-cccccccCcCCCCcccccccccccccchhccccCCCCC--ccCCCccC
Confidence 1 1256676654 5577787777777655 4444566799999999999986210 1122 123332
Q ss_pred CeeeccCCCCeeecCCCCCCCCCCCC---------CCCCCCCCCCCCCeeecCCCCCCCeEeecCCCCCCCCCCc
Q psy9685 838 NGECINQPGDYKCACQFDTCGYLCNF---------PDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTE 903 (979)
Q Consensus 838 ~g~C~~~~gs~~C~C~~g~~G~~C~~---------~~~C~~~~C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C~~ 903 (979)
.-.|....| +|+|++||-|..|.. ...|....|...|.=...|. ..++.|.|.+|-.|..|..
T Consensus 1076 ~pqCN~ftG--QCqCkpGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQCd-r~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1076 GPQCNEFTG--QCQCKPGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQCD-RATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred Ccccccccc--ceeccCCCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCCcc-ccCCceeecCCCCCcchhh
Confidence 236777777 999999999999963 23455555666554333332 3567999999999999875
No 21
>KOG1217|consensus
Probab=99.39 E-value=1.9e-11 Score=144.74 Aligned_cols=249 Identities=31% Similarity=0.689 Sum_probs=172.0
Q ss_pred CCCCCCCCCCEEeeCCCCcEEecCCCcccCccccccccccCCCC--CCCCceecCCCCCCCCCCCCeecCCCCCCCCCcc
Q psy9685 643 CLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQP--CYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720 (979)
Q Consensus 643 C~~~~C~~~g~C~~~~~~~~C~C~~G~~G~~C~~~~~~~c~~~~--C~~~~~C~~~~~~~~~~~~~~C~C~~G~~G~~C~ 720 (979)
|...++...+.+......+.|.|..||.+..|+... .|...+ +...+.|..... ....+.|.|..||.+..|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~c~c~~g~~~~~~~~~~--~C~~~~~~~~~~~~c~~~~~---~~~~~~c~C~~g~~~~~~~ 166 (487)
T KOG1217|consen 92 CRSPCLLLCGECVDCVGSYECTCPPGYQGTPCEGEC--ECVTGPGVCCIDGSCSNGPG---SVGPFRCSCTEGYEGEPCE 166 (487)
T ss_pred ccCCcccCCccccCCCCCceeeCCCccccCcCCcce--eecCCCCCeeCchhhcCCCC---CCCceeeeeCCCccccccc
Confidence 334444455666667788999999999998887421 243333 344555554311 1346789999999999998
Q ss_pred ccCCCCC--CCCCCCCceEecCCCCeEEecCCCCcCCCCccccccccCCCCCCccccccCCCcCCCCCC---CCcCCCCC
Q psy9685 721 INIDECA--SGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCP---ECFSLDSG 795 (979)
Q Consensus 721 ~~~~~C~--~~~C~~~g~C~~~~g~~~C~C~~g~~g~~~~c~~~~~~~~~~~~~~~~~~~g~~~~~~C~---~C~~~~~~ 795 (979)
.+.++|. ..+|.+.+.|.+..++|.|.|+++|.+..+... ...+.+.....+.+..++.....+. .|...
T Consensus 167 ~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~--~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~--- 241 (487)
T KOG1217|consen 167 TDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT--GNGGTCVDSVACSCPPGARGPECEVSIVECASG--- 241 (487)
T ss_pred ccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC--CCCceEecceeccCCCCCCCCCcccccccccCC---
Confidence 6668998 345999999999999999999999999987643 1111122223344555555222221 12111
Q ss_pred CCCCCCCCCCCCccccCCCCcCCCC--ccccCcccccCCCCCCCCeeeccCCCCeeecCCCCCCCCCC-C--CCCCCC--
Q psy9685 796 PGGPGLADSGPGVQTTPILGYTGEM--CEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC-N--FPDPCK-- 868 (979)
Q Consensus 796 ~~~~~~~~~~~~~~C~C~~g~~G~~--C~~~~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~G~~C-~--~~~~C~-- 868 (979)
. ..+.+...++.|.|.+||.+.. ..+++++|..... |.++++|.+..+.|.|.|++||.|..| . ...+|.
T Consensus 242 -~-~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~ 318 (487)
T KOG1217|consen 242 -D-GTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPR 318 (487)
T ss_pred -C-CcccccCCceeeeCCCCccccccceeeeccccCCCCc-cCCCCeeecCCCcceeeCCCCCCCCCCcccccccccccc
Confidence 1 3334444558999999999987 3457899976555 999999999999999999999999997 2 235773
Q ss_pred --CCCCCCCCeeecCCCCCCCeEeecCCCCCCCCCCcCC
Q psy9685 869 --DEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVP 905 (979)
Q Consensus 869 --~~~C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C~~~~ 905 (979)
..+|.+++.|... .....+.|.|..+|.|..|+...
T Consensus 319 ~~~~~c~~g~~C~~~-~~~~~~~C~c~~~~~g~~C~~~~ 356 (487)
T KOG1217|consen 319 NAGGPCANGGTCNTL-GSFGGFRCACGPGFTGRRCEDSN 356 (487)
T ss_pred ccCCcCCCCcccccC-CCCCCCCcCCCCCCCCCccccCC
Confidence 4468888888321 23456789999999999998763
No 22
>KOG1225|consensus
Probab=99.30 E-value=2e-11 Score=137.27 Aligned_cols=76 Identities=33% Similarity=0.877 Sum_probs=45.7
Q ss_pred cEEecCCCcccCccccccccccCCCCCCCCceecCCCCCCCCCCCCeecCCCCCCCCCccccCCCCCCCCCCCCceEecC
Q psy9685 661 FVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDD 740 (979)
Q Consensus 661 ~~C~C~~G~~G~~C~~~~~~~c~~~~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~ 740 (979)
..|.|..+|+|+.|.. ..|. ..|...+.|.+. +|.|++||+|..|+ .-.|... |++++.|++.
T Consensus 234 ~ic~c~~~~~g~~c~~---~~C~-~~c~~~g~c~~G----------~CIC~~Gf~G~dC~--e~~Cp~~-cs~~g~~~~g 296 (525)
T KOG1225|consen 234 GICECPEGYFGPLCST---IYCP-GGCTGRGQCVEG----------RCICPPGFTGDDCD--ELVCPVD-CSGGGVCVDG 296 (525)
T ss_pred ceeecCCceeCCcccc---ccCC-CCCcccceEeCC----------eEeCCCCCcCCCCC--cccCCcc-cCCCceecCC
Confidence 3677777777777662 1222 235555666554 67777777777775 2345555 6666666554
Q ss_pred CCCeEEecCCCCcCCCC
Q psy9685 741 VNAFICNCTNTATGASM 757 (979)
Q Consensus 741 ~g~~~C~C~~g~~g~~~ 757 (979)
+|+|++||.|.+|
T Consensus 297 ----~CiC~~g~~G~dC 309 (525)
T KOG1225|consen 297 ----ECICNPGYSGKDC 309 (525)
T ss_pred ----EeecCCCcccccc
Confidence 5777766666554
No 23
>KOG1214|consensus
Probab=99.25 E-value=2.5e-11 Score=136.45 Aligned_cols=155 Identities=25% Similarity=0.632 Sum_probs=103.2
Q ss_pred CCCCCCCCceecCCCCCCCCCCCCeecCCCCCC--CCCccccCCCCCCC--CCCCCceEecCCCCeEEecCCCCcCCC--
Q psy9685 683 ADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR--GSRCEINIDECASG--PCKNSGQCIDDVNAFICNCTNTATGAS-- 756 (979)
Q Consensus 683 ~~~~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~--G~~C~~~~~~C~~~--~C~~~g~C~~~~g~~~C~C~~g~~g~~-- 756 (979)
....|..+..|.... ...|+|.|..||. |..|. |+++|+.. .|+.+..|++.+++|+|+|..||.-.+
T Consensus 698 gsh~cdt~a~C~pg~-----~~~~tcecs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~ 771 (1289)
T KOG1214|consen 698 GSHMCDTTARCHPGT-----GVDYTCECSSGYQGDGRNCV-DENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDR 771 (1289)
T ss_pred cCcccCCCccccCCC-----CcceEEEEeeccCCCCCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCC
Confidence 344455566676552 3467999999998 56785 88899865 499999999999999999999886443
Q ss_pred CccccccccCCCCCCccccccCCCcCCCCCCCCcCCCCCCCCCC--CCCCCCCccccCCCCcCC--CCccccCcccccCC
Q psy9685 757 MGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPG--LADSGPGVQTTPILGYTG--EMCEIDINECELSS 832 (979)
Q Consensus 757 ~~c~~~~~~~~~~~~~~~~~~~g~~~~~~C~~C~~~~~~~~~~~--~~~~~~~~~C~C~~g~~G--~~C~~~~~~C~~~~ 832 (979)
.+|...... ...+.|.+-.. ++...+.+ ...-+..|.|.|.+||.| ..|. |.|||. +
T Consensus 772 ~tCV~i~~p---------------ap~n~Ce~g~h-~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~-dvDeC~--p 832 (1289)
T KOG1214|consen 772 HTCVLITPP---------------APANPCEDGSH-TCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCT-DVDECS--P 832 (1289)
T ss_pred cceEEecCC---------------CCCCccccCcc-ccCcCCceEEEecCCceEEEeecCCccCCccccc-cccccC--c
Confidence 334322110 00111211000 11111221 122356788999999985 4786 789997 6
Q ss_pred CCCCCCeeeccCCCCeeecCCCCCCC--CCCC
Q psy9685 833 DMCGNNGECINQPGDYKCACQFDTCG--YLCN 862 (979)
Q Consensus 833 ~~C~~~g~C~~~~gs~~C~C~~g~~G--~~C~ 862 (979)
..|..+++|.+++|++.|+|.+||.| ..|.
T Consensus 833 srChp~A~CyntpgsfsC~C~pGy~GDGf~CV 864 (1289)
T KOG1214|consen 833 SRCHPAATCYNTPGSFSCRCQPGYYGDGFQCV 864 (1289)
T ss_pred cccCCCceEecCCCcceeecccCccCCCceec
Confidence 78988899999999999999999964 4564
No 24
>KOG1225|consensus
Probab=99.19 E-value=1.6e-10 Score=130.02 Aligned_cols=147 Identities=34% Similarity=0.790 Sum_probs=102.2
Q ss_pred CceEECCCCccCCCCCCC--CCCCCCCC-CC-CCCeeccCCCceeeecCCCCCCCccccccccCCCCCCCCCCEEeeCCC
Q psy9685 584 SYACKCPAGYSSETCAVD--IDECVTHN-CQ-NGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLA 659 (979)
Q Consensus 584 ~~~C~C~~G~~g~~C~~~--~~~C~~~~-C~-~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~~ 659 (979)
.+.|.+..+|++..|... .+.+...- +. ....|....-...|.|..+|.|+.|. ...|. ..|.+++.|++.
T Consensus 191 ~~~~l~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ic~c~~~~~g~~c~--~~~C~-~~c~~~g~c~~G-- 265 (525)
T KOG1225|consen 191 FGNCLSGISASGETCNQLGCNDDCFRTGRCREGRCFCTAGFFDGICECPEGYFGPLCS--TIYCP-GGCTGRGQCVEG-- 265 (525)
T ss_pred ecccccccCcchhhhhcccCCccceeccccccCcccccccccCceeecCCceeCCccc--cccCC-CCCcccceEeCC--
Confidence 345667777777766321 01111110 00 01122222233479999999999997 33454 447888999877
Q ss_pred CcEEecCCCcccCccccccccccCCCCCCCCceecCCCCCCCCCCCCeecCCCCCCCCCccccCCCCCCCCCCCCceEec
Q psy9685 660 GFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCID 739 (979)
Q Consensus 660 ~~~C~C~~G~~G~~C~~~~~~~c~~~~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~ 739 (979)
+|.|++||+|..|+. ..|... |+.++.|.+. +|.|++||.|..|+ +.+|. ..|.++|.|+.
T Consensus 266 --~CIC~~Gf~G~dC~e---~~Cp~~-cs~~g~~~~g----------~CiC~~g~~G~dCs--~~~cp-adC~g~G~Ci~ 326 (525)
T KOG1225|consen 266 --RCICPPGFTGDDCDE---LVCPVD-CSGGGVCVDG----------ECICNPGYSGKDCS--IRRCP-ADCSGHGKCID 326 (525)
T ss_pred --eEeCCCCCcCCCCCc---ccCCcc-cCCCceecCC----------EeecCCCccccccc--cccCC-ccCCCCCcccC
Confidence 999999999999984 446665 8888888755 89999999999997 45576 55999999983
Q ss_pred CCCCeEEecCCCCcCCCCc
Q psy9685 740 DVNAFICNCTNTATGASMG 758 (979)
Q Consensus 740 ~~g~~~C~C~~g~~g~~~~ 758 (979)
. +|.|++||+|..|.
T Consensus 327 G----~C~C~~Gy~G~~C~ 341 (525)
T KOG1225|consen 327 G----ECLCDEGYTGELCI 341 (525)
T ss_pred C----ceEeCCCCcCCccc
Confidence 3 79999988887753
No 25
>KOG1226|consensus
Probab=99.16 E-value=1.7e-10 Score=131.20 Aligned_cols=116 Identities=33% Similarity=0.771 Sum_probs=88.5
Q ss_pred eeecCCCCCCCcccccc---------ccCCC----CCCCCCCEEeeCCCCcEEecCCCcc----cCccccccccccCC--
Q psy9685 624 SCECTPGWEGALCEKEI---------DECLS----NPCMNGGQCEDRLAGFVCNCSEEYV----GERCESLRQISCAD-- 684 (979)
Q Consensus 624 ~C~C~~G~~G~~C~~~~---------~~C~~----~~C~~~g~C~~~~~~~~C~C~~G~~----G~~C~~~~~~~c~~-- 684 (979)
.|.|.+||.|..|+... +.|.. .+|++.|.|... +|.|.+... |.+|++.+ ..|..
T Consensus 479 ~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~fCECDn-fsC~r~~ 553 (783)
T KOG1226|consen 479 QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGKFCECDN-FSCERHK 553 (783)
T ss_pred ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeeeeeeccC-ccccccc
Confidence 48899999999997432 33432 369999999987 899988776 99998643 23433
Q ss_pred -CCCCCCceecCCCCCCCCCCCCeecCCCCCCCCCcc--ccCCCCCCC---CCCCCceEecCCCCeEEecCCC-CcCCCC
Q psy9685 685 -QPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE--INIDECASG---PCKNSGQCIDDVNAFICNCTNT-ATGASM 757 (979)
Q Consensus 685 -~~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~G~~C~--~~~~~C~~~---~C~~~g~C~~~~g~~~C~C~~g-~~g~~~ 757 (979)
..|.++|.|..+ +|.|.+||+|..|+ .+.+.|.+. -|+++|+|... +|+|... |.|..|
T Consensus 554 g~lC~g~G~C~CG----------~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C~~~~~sG~~C 619 (783)
T KOG1226|consen 554 GVLCGGHGRCECG----------RCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECG----RCKCTDPPYSGEFC 619 (783)
T ss_pred CcccCCCCeEeCC----------cEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCC----ceEcCCCCcCcchh
Confidence 348888888765 79999999999886 556778643 39999999876 7999876 888876
Q ss_pred c
Q psy9685 758 G 758 (979)
Q Consensus 758 ~ 758 (979)
.
T Consensus 620 E 620 (783)
T KOG1226|consen 620 E 620 (783)
T ss_pred h
Confidence 5
No 26
>KOG0994|consensus
Probab=99.04 E-value=1.7e-09 Score=125.55 Aligned_cols=253 Identities=26% Similarity=0.576 Sum_probs=126.9
Q ss_pred CceEECCCCccCCCCCC------CCCCCCCCCCCCC--------Cee---ccCCCceeee-cCCCCCCCccccccccCCC
Q psy9685 584 SYACKCPAGYSSETCAV------DIDECVTHNCQNG--------ARC---IDGVARYSCE-CTPGWEGALCEKEIDECLS 645 (979)
Q Consensus 584 ~~~C~C~~G~~g~~C~~------~~~~C~~~~C~~~--------~~C---~~~~g~~~C~-C~~G~~G~~C~~~~~~C~~ 645 (979)
+..|.|.+|-.|..|.. ...+|.+..|..+ |.| .+....+.|. |..||+|..--..-..|.+
T Consensus 829 tGQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrP 908 (1758)
T KOG0994|consen 829 TGQCQCRPGTYGRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRP 908 (1758)
T ss_pred ccceeeccccchhhccccCCCccCCCcCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCC
Confidence 56788888877777742 2344544444322 233 3444556775 8999987543222334555
Q ss_pred CCCCCCC--------EEee--CCCCcEEecCCCcccCccccccccccCCCCCCCCceecCCCC-----------------
Q psy9685 646 NPCMNGG--------QCED--RLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKI----------------- 698 (979)
Q Consensus 646 ~~C~~~g--------~C~~--~~~~~~C~C~~G~~G~~C~~~~~~~c~~~~C~~~~~C~~~~~----------------- 698 (979)
.||..+- .|.- ......|.|.+||.|.+|+.... .-..+|-. +|+|..-.-
T Consensus 909 CpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~CA~-~~fGnP~~-GGtCq~CeC~~NiD~~d~~aCD~~TG 986 (1758)
T KOG0994|consen 909 CPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEICAD-NHFGNPSE-GGTCQKCECSNNIDLYDPGACDVATG 986 (1758)
T ss_pred CCCCCCCccchhccccccccccccceeeecccCccccchhhhcc-cccCCccc-CCccccccccCCcCccCCCccchhhc
Confidence 5554321 3432 23346799999999999985211 11112211 333321100
Q ss_pred ----CCCCCCCCee-cCCCCCCCCCccccCCCCCCCCCC--CCceEecCCCCeEEecCCCCcCCCCc-cccccccCCCCC
Q psy9685 699 ----SPYFPQGPIC-DCPPGYRGSRCEINIDECASGPCK--NSGQCIDDVNAFICNCTNTATGASMG-CLGEVRLGDLLL 770 (979)
Q Consensus 699 ----~~~~~~~~~C-~C~~G~~G~~C~~~~~~C~~~~C~--~~g~C~~~~g~~~C~C~~g~~g~~~~-c~~~~~~~~~~~ 770 (979)
+.+...+.+| .|++||.|+.=..+.-.|.-+.=+ +.+.|....| +|-|.|.-.|..|. |..+..
T Consensus 987 ~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn~~~~CDr~tG--QCpClpNv~G~~CDqCA~N~w------ 1058 (1758)
T KOG0994|consen 987 ACLKCLYHTEGDHCEHCKDGFYGDALRQNCQRCVCNFLGTNSTCHCDRFTG--QCPCLPNVQGVRCDQCAENHW------ 1058 (1758)
T ss_pred hhhhhhhcccccchhhccccchhHHHHhhhhhheccccccCCccccccccC--cCCCCcccccccccccccchh------
Confidence 1112234456 688888876432222222211101 1133433333 78888888887765 322110
Q ss_pred CccccccCCCcCCCCCCCCcCCCCCCCCCCCCCCCCCccccCCCCcCCCCccc-------cCc-ccccCCCCCCCCe---
Q psy9685 771 PYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEI-------DIN-ECELSSDMCGNNG--- 839 (979)
Q Consensus 771 ~~~~~~~~g~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~C~C~~g~~G~~C~~-------~~~-~C~~~~~~C~~~g--- 839 (979)
.-....-|..|.+.. ..++.+ ..=..+|.|.+||-|+.|.+ |.+ +|. ...|...|
T Consensus 1059 --------~laSG~GCe~C~Cd~--~~~pqC--N~ftGQCqCkpGfGGR~C~qCqel~WGdP~~~C~--aCdCd~rG~~t 1124 (1758)
T KOG0994|consen 1059 --------NLASGEGCEPCNCDP--IGGPQC--NEFTGQCQCKPGFGGRTCSQCQELYWGDPNEKCR--ACDCDPRGIET 1124 (1758)
T ss_pred --------ccccCCCCCccCCCc--cCCccc--cccccceeccCCCCCcchhHHHHhhcCCCCCCce--ecCCCCCCCCC
Confidence 011222345554443 222322 22346899999999999972 001 121 12344333
Q ss_pred -eeccCCCCeeecCCCCCCCCCCC
Q psy9685 840 -ECINQPGDYKCACQFDTCGYLCN 862 (979)
Q Consensus 840 -~C~~~~gs~~C~C~~g~~G~~C~ 862 (979)
.|....| .|.|.+|-.|.+|.
T Consensus 1125 pQCdr~tG--~C~C~~Gv~G~rCd 1146 (1758)
T KOG0994|consen 1125 PQCDRATG--RCVCRPGVGGPRCD 1146 (1758)
T ss_pred CCccccCC--ceeecCCCCCcchh
Confidence 2544444 67777777777763
No 27
>KOG4260|consensus
Probab=98.93 E-value=1.6e-09 Score=107.48 Aligned_cols=159 Identities=24% Similarity=0.524 Sum_probs=106.5
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCceEec---CCCCeEEecCCCCcCCCCccccccccCCCCCCccccccCCCcC----
Q psy9685 710 CPPGYRGSRCEINIDECASGPCKNSGQCID---DVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTD---- 782 (979)
Q Consensus 710 C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~---~~g~~~C~C~~g~~g~~~~c~~~~~~~~~~~~~~~~~~~g~~~---- 782 (979)
|++|-.|..|. ..+--+..+|.++|.|.- ..|+..|.|.+||+|..|. .|..+|..
T Consensus 132 Cp~gtyGpdCl-~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~----------------~Cg~eyfes~Rn 194 (350)
T KOG4260|consen 132 CPDGTYGPDCL-QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCR----------------YCGIEYFESSRN 194 (350)
T ss_pred cCCCCcCCccc-cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCcccc----------------ccchHHHHhhcc
Confidence 89999999986 222223457999999973 3566799999999999875 23333321
Q ss_pred --CCCCCCCcCCCCCCCCCCCCCCCCCccccCCCCcC--CCCccccCcccccCCCCCCCCeeeccCCCCeeecCCCCCCC
Q psy9685 783 --TLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYT--GEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCG 858 (979)
Q Consensus 783 --~~~C~~C~~~~~~~~~~~~~~~~~~~~C~C~~g~~--G~~C~~~~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~G 858 (979)
...|..|... +...+.......+-.|..||. -..| +|+|||...+..|..+..|+|+.|||+|.+++||.+
T Consensus 195 e~~lvCt~Ch~~----C~~~Csg~~~k~C~kCkkGW~lde~gC-vDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 195 EQHLVCTACHEG----CLGVCSGESSKGCSKCKKGWKLDEEGC-VDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred cccchhhhhhhh----hhcccCCCCCCChhhhcccceeccccc-ccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 1223222211 111111112223346778887 4467 499999988999999999999999999999999987
Q ss_pred CCCCCCCCCCC--CCCC-CCCeeecCCCCCCCeEeecCCCCC
Q psy9685 859 YLCNFPDPCKD--EPCQ-NGGTCHEDCRHQADYKCDCLPGWT 897 (979)
Q Consensus 859 ~~C~~~~~C~~--~~C~-~~g~C~~~c~~~~~~~C~C~~G~~ 897 (979)
. .|+|.. ..|. .++.|. +..+.|.|.|..|+.
T Consensus 270 g----~d~C~~~~d~~~~kn~~c~---ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 270 G----VDECQFCADVCASKNRPCM---NIDGQYRCVCFSGLI 304 (350)
T ss_pred C----hHHhhhhhhhcccCCCCcc---cCCccEEEEecccce
Confidence 3 455543 2233 356677 457899999999874
No 28
>KOG4260|consensus
Probab=98.90 E-value=1.7e-09 Score=107.31 Aligned_cols=117 Identities=26% Similarity=0.659 Sum_probs=72.2
Q ss_pred cCCCCCCCccccccccCCCCCCCCCCEEee---CCCCcEEecCCCcccCcccccccc-----------ccC--CCCCCCC
Q psy9685 627 CTPGWEGALCEKEIDECLSNPCMNGGQCED---RLAGFVCNCSEEYVGERCESLRQI-----------SCA--DQPCYFG 690 (979)
Q Consensus 627 C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~---~~~~~~C~C~~G~~G~~C~~~~~~-----------~c~--~~~C~~~ 690 (979)
|+.|.+|+.|.. ..--...||..+|.|.- ..|+-.|.|..||.|+.|...... .|. ..+| .
T Consensus 132 Cp~gtyGpdCl~-Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C--~ 208 (350)
T KOG4260|consen 132 CPDGTYGPDCLQ-CPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGC--L 208 (350)
T ss_pred cCCCCcCCcccc-CCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhh--h
Confidence 667777776641 11112345777777752 234567888888888777531110 010 0112 1
Q ss_pred ceecCCCCCCCCCCCCee-cCCCCCCC--CCccccCCCCCC--CCCCCCceEecCCCCeEEecCCCCcC
Q psy9685 691 AVCQDTKISPYFPQGPIC-DCPPGYRG--SRCEINIDECAS--GPCKNSGQCIDDVNAFICNCTNTATG 754 (979)
Q Consensus 691 ~~C~~~~~~~~~~~~~~C-~C~~G~~G--~~C~~~~~~C~~--~~C~~~g~C~~~~g~~~C~C~~g~~g 754 (979)
+.|.... .-.| .|+.||.- ..|. |||||.. .||..+..|+|+.|+|.|.+.+||.+
T Consensus 209 ~~Csg~~-------~k~C~kCkkGW~lde~gCv-DvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 209 GVCSGES-------SKGCSKCKKGWKLDEEGCV-DVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred cccCCCC-------CCChhhhcccceecccccc-cHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 2443321 2235 69999984 3564 9999974 46999999999999999999887654
No 29
>KOG1836|consensus
Probab=98.76 E-value=1.2e-07 Score=120.67 Aligned_cols=112 Identities=26% Similarity=0.555 Sum_probs=69.4
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCccccCCCCcCCCCcccc------Cc---ccccCCCCCCCC----eeeccCCCCeee
Q psy9685 784 LSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEID------IN---ECELSSDMCGNN----GECINQPGDYKC 850 (979)
Q Consensus 784 ~~C~~C~~~~~~~~~~~~~~~~~~~~C~C~~g~~G~~C~~~------~~---~C~~~~~~C~~~----g~C~~~~gs~~C 850 (979)
..|..|.+...+...+.........+|.|.+.-.|..|..- ++ .|. ...|+.. ..|....| +|
T Consensus 886 ~~c~~c~c~p~gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC~--~c~c~~~gs~~~~c~~~tG--qc 961 (1705)
T KOG1836|consen 886 DKCFACGCVPAGSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSGVGCE--PCNCDPTGSESSDCDVGTG--QC 961 (1705)
T ss_pred CccccccCccCCcccccccCCCcccceeccCCCCccccccccccccccCCCCCcc--cccccccccccccccccCC--ce
Confidence 44666665555555444445566778888888887776410 11 222 1234332 25654444 99
Q ss_pred cCCCCCCCCCCCC---------CCCCCCCCCCCCC----eeecCCCCCCCeEeecCCCCCCCCCCcC
Q psy9685 851 ACQFDTCGYLCNF---------PDPCKDEPCQNGG----TCHEDCRHQADYKCDCLPGWTGKNCTEV 904 (979)
Q Consensus 851 ~C~~g~~G~~C~~---------~~~C~~~~C~~~g----~C~~~c~~~~~~~C~C~~G~~G~~C~~~ 904 (979)
.|.+|-+|.+|.. ...|....|...| .|. ...++|.|.+++.|..|..-
T Consensus 962 ~c~~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~-----~~~G~c~c~~~~~g~~c~~c 1023 (1705)
T KOG1836|consen 962 YCRPGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCD-----PEDGQCPCRPGFEGRRCDQC 1023 (1705)
T ss_pred eeecCccccccCccccCcccccccCCcceecccCCcccceec-----ccCCeeeecCCCCCcccccc
Confidence 9999999999864 2334444566666 355 33679999999999877653
No 30
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=98.42 E-value=2.7e-06 Score=85.88 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=86.3
Q ss_pred ccccccccCCCeeEEEEeCccccccceeeEEEEEEEEeC-CCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEE
Q psy9685 68 AATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTR-QLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGEL 146 (979)
Q Consensus 68 a~~Fg~~~~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~-~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l 146 (979)
|++|+. ...+..++....+..+...+.|++.||+. ...|.||-..+. ....++.|.|.+++.
T Consensus 29 Ay~~~~----~a~~~~~t~~~~p~~~~~~fsi~~~~r~~~~~~g~L~si~~~-------------~~~~~l~v~l~g~~~ 91 (184)
T smart00210 29 AYRLGD----PALVPQPTRDLFPSGLPEDFSLLTTFRQTPKSRGVLFAIYDA-------------QNVRQFGLEVDGRAN 91 (184)
T ss_pred eEEecC----CcccCcchHHhCcCCCCCCeEEEEEEEeCCCCCeEEEEEEcC-------------CCcEEEEEEEeCCcc
Confidence 666654 34444444444444566889999999997 677888876531 145699999987775
Q ss_pred EEEEEe--CCcc-eEEeecCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEecCccc--ccccceeEEcCCC
Q psy9685 147 FVRLQF--NSTP-ESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTG--ILDVQVLYLGGIP 214 (979)
Q Consensus 147 ~~~~~~--g~~~-~~~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~--~l~~~~lyvGG~p 214 (979)
.+.|.. ..+. .........+.||+||+|.+...+..++|+||............. .++...++++|..
T Consensus 92 ~~~~~~~~~~g~~~~~~f~~~~l~dg~WH~lal~V~~~~v~LyvDC~~~~~~~l~~~~~~~~~~~g~~~~g~~ 164 (184)
T smart00210 92 TLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQPPIDTDGIEVRGAQ 164 (184)
T ss_pred EEEEEECCCCCcEEEEeecCCccccCCceEEEEEEeCCEEEEEECCccccceecCCcccccccccceEEEeec
Confidence 555553 2222 222334478999999999999999999999999876554332222 3444455666654
No 31
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=98.14 E-value=3.6e-05 Score=77.71 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=62.7
Q ss_pred ccceeEEEEEEEec-cCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEc--CCcCcee-eecCeeecC
Q psy9685 290 VRNIVDISMFIRTR-QLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQF--NSTPESY-NVGGVKLAD 365 (979)
Q Consensus 290 ~~~~~~is~~frT~-~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~--g~~~~~~-~~~~~~l~D 365 (979)
...+++|.+.||+. ..+|.||.+... ++..++.|.+..++..+.+.. ..+.... ......+.|
T Consensus 50 ~~~~fsi~~~~r~~~~~~g~L~si~~~-------------~~~~~l~v~l~g~~~~~~~~~~~~~g~~~~~~f~~~~l~d 116 (184)
T smart00210 50 LPEDFSLLTTFRQTPKSRGVLFAIYDA-------------QNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLAD 116 (184)
T ss_pred CCCCeEEEEEEEeCCCCCeEEEEEEcC-------------CCcEEEEEEEeCCccEEEEEECCCCCcEEEEeecCCcccc
Confidence 45678999999997 678999988542 255799999987765555543 2333222 233477999
Q ss_pred CCeeEEEEEeecceeeeEEEEEccCCCc
Q psy9685 366 GNNHLIQTISSTGILDVQVLYLGGIPET 393 (979)
Q Consensus 366 G~wH~V~~~~~~~~l~l~vlyvGG~p~~ 393 (979)
|+||+|.+...+..+ .||+++-+..
T Consensus 117 g~WH~lal~V~~~~v---~LyvDC~~~~ 141 (184)
T smart00210 117 GQWHKLALSVSGSSA---TLYVDCNEID 141 (184)
T ss_pred CCceEEEEEEeCCEE---EEEECCcccc
Confidence 999999999988863 5788876544
No 32
>KOG1836|consensus
Probab=98.03 E-value=5.1e-05 Score=97.54 Aligned_cols=61 Identities=30% Similarity=0.727 Sum_probs=39.6
Q ss_pred eeccCCCCeeecCCCCCCCCCCCC----------CCCCCCCCCCCCCeeecCCCCCCCeEeecCCCCCCCCCCc
Q psy9685 840 ECINQPGDYKCACQFDTCGYLCNF----------PDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTE 903 (979)
Q Consensus 840 ~C~~~~gs~~C~C~~g~~G~~C~~----------~~~C~~~~C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C~~ 903 (979)
+|....| +|+|.+.-.|..|.. ...|....|..-|.=..+| ...+++|.|.+|-+|..|..
T Consensus 904 ~c~~~tG--Qcec~~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c-~~~tGqc~c~~gVtgqrc~q 974 (1705)
T KOG1836|consen 904 TCNPVTG--QCECKPNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESSDC-DVGTGQCYCRPGVTGQRCDQ 974 (1705)
T ss_pred cCCCccc--ceeccCCCCccccccccccccccCCCCCcccccccccccccccc-cccCCceeeecCccccccCc
Confidence 4655555 888888888877742 1255555566544322222 15678999999999988764
No 33
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=97.82 E-value=0.00013 Score=71.43 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCeeEEEEeCccccccceeeEEEEEEEEeCCCCe---EEEEecCCCCCCCCCCCCCCCCCCCEEEEEEe-CcEEEEEEEe
Q psy9685 77 TNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRG---AIFYLGGSGDRSSPSSNGAGSEETSYIAAEME-AGELFVRLQF 152 (979)
Q Consensus 77 ~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~~G---lLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~-~G~l~~~~~~ 152 (979)
.++++.++... .+ ...++|++.||.....+ ++++... ..+.+.|.+. +|++++.+..
T Consensus 8 ~~~~i~~~~~~---~~-~~~fTi~~w~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~l~~~~~~ 68 (157)
T PF13385_consen 8 SNDYISIPNSD---FP-SGSFTISFWVKPDSPSSSQSFVFMDSS---------------GSGGFGLFINNNGRLRFYIGN 68 (157)
T ss_dssp TT-EEEEESGG---GG-GTEEEEEEEEEESS--SSEEEEEESSS---------------SSEEEEEEEETTSEEEEEETT
T ss_pred CCCEEEECCcC---CC-CCCEEEEEEEEeCCCCCCceEEEEecC---------------CCCEEEEEEECCCEEEEEEeC
Confidence 47899998722 22 47899999999876443 3333111 2347777775 5777776655
Q ss_pred CCcceEEeecCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEecCcccccccc-eeEEcCCC
Q psy9685 153 NSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGIP 214 (979)
Q Consensus 153 g~~~~~~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~l~~~-~lyvGG~p 214 (979)
+.+..........+.+++||+|.+..++..+.|.|||................. .++||+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~iG~~~ 131 (157)
T PF13385_consen 69 GGGGNYSFSSDSNLPDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLFIGGSG 131 (157)
T ss_dssp SEEESS-EE-BS---TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEEESS-S
T ss_pred CCceeEEEecCcccCCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEEEeecC
Confidence 432111222457899999999999999999999999987644433222222333 89999876
No 34
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.81 E-value=9.1e-06 Score=59.70 Aligned_cols=34 Identities=38% Similarity=0.897 Sum_probs=31.6
Q ss_pred cCcccccCCCCCCCCeeeccCCCCeeecCCCCCC
Q psy9685 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTC 857 (979)
Q Consensus 824 ~~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~ 857 (979)
|||||....+.|..++.|+|+.|+|.|.|++||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 6899998888999899999999999999999996
No 35
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.48 E-value=7.2e-05 Score=54.93 Aligned_cols=33 Identities=33% Similarity=0.894 Sum_probs=29.3
Q ss_pred cCCCCCCC--CCCCCceEecCCCCeEEecCCCCcC
Q psy9685 722 NIDECASG--PCKNSGQCIDDVNAFICNCTNTATG 754 (979)
Q Consensus 722 ~~~~C~~~--~C~~~g~C~~~~g~~~C~C~~g~~g 754 (979)
|||||... .|..++.|+|+.|+|+|.|++||..
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence 68999865 5988999999999999999999983
No 36
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.43 E-value=0.00015 Score=52.37 Aligned_cols=37 Identities=38% Similarity=0.952 Sum_probs=28.0
Q ss_pred CcccccCCCCCCCCeeeccCCCCeeecCCCCCC-CCCCC
Q psy9685 825 INECELSSDMCGNNGECINQPGDYKCACQFDTC-GYLCN 862 (979)
Q Consensus 825 ~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~-G~~C~ 862 (979)
+++|... ..|.++++|++..|+|.|.|++||. |..|+
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCC-CCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 5677532 5687778888888888888888888 77763
No 37
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=97.37 E-value=0.00028 Score=62.67 Aligned_cols=32 Identities=34% Similarity=0.821 Sum_probs=23.4
Q ss_pred CCCCCeeecCCCCCCCeEeecCCCCCCCCCCcCC
Q psy9685 872 CQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVP 905 (979)
Q Consensus 872 C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C~~~~ 905 (979)
|.+ |+|.-. .....+.|.|..||+|.+|+..+
T Consensus 53 ClH-G~C~yI-~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 53 CLH-GDCIHA-RDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred eEC-CEEEee-ccCCCceeECCCCccccccccee
Confidence 555 377633 23467889999999999998765
No 38
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.32 E-value=0.00013 Score=49.79 Aligned_cols=30 Identities=43% Similarity=1.053 Sum_probs=27.0
Q ss_pred CCCCCCCCCceEecCC-CCeEEecCCCCcCC
Q psy9685 726 CASGPCKNSGQCIDDV-NAFICNCTNTATGA 755 (979)
Q Consensus 726 C~~~~C~~~g~C~~~~-g~~~C~C~~g~~g~ 755 (979)
|...+|.++|+|++.. ++|+|.|++||+|.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 5567899999999988 99999999999985
No 39
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.25 E-value=0.00019 Score=49.03 Aligned_cols=30 Identities=50% Similarity=1.224 Sum_probs=21.7
Q ss_pred CCCCCCCCCCEEeeCC-CCcEEecCCCcccC
Q psy9685 643 CLSNPCMNGGQCEDRL-AGFVCNCSEEYVGE 672 (979)
Q Consensus 643 C~~~~C~~~g~C~~~~-~~~~C~C~~G~~G~ 672 (979)
|..+||.++|+|+... ++|.|.|++||+|+
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 3456777777787776 77778888877765
No 40
>KOG3512|consensus
Probab=97.20 E-value=0.0019 Score=70.15 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.4
Q ss_pred CeEeecCCCCCCCCCCcCCCc
Q psy9685 887 DYKCDCLPGWTGKNCTEVPEY 907 (979)
Q Consensus 887 ~~~C~C~~G~~G~~C~~~~~~ 907 (979)
..-|.|+.++.|..|+...-+
T Consensus 463 d~~s~Ck~~~~~~r~n~kkfc 483 (592)
T KOG3512|consen 463 DQCSKCKASPGGKRLNQKKFC 483 (592)
T ss_pred hccccCCCCCcceeccccccC
Confidence 446789999999888765433
No 41
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.17 E-value=0.00058 Score=49.24 Aligned_cols=36 Identities=44% Similarity=1.065 Sum_probs=30.7
Q ss_pred cCCCCCC-CCCCCCceEecCCCCeEEecCCCCc-CCCC
Q psy9685 722 NIDECAS-GPCKNSGQCIDDVNAFICNCTNTAT-GASM 757 (979)
Q Consensus 722 ~~~~C~~-~~C~~~g~C~~~~g~~~C~C~~g~~-g~~~ 757 (979)
++++|.. .+|.+++.|++..++|.|.|++||. |..|
T Consensus 1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C 38 (39)
T smart00179 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38 (39)
T ss_pred CcccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence 3678877 7899989999999999999999998 6543
No 42
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=96.99 E-value=0.00019 Score=68.84 Aligned_cols=123 Identities=29% Similarity=0.760 Sum_probs=70.1
Q ss_pred CCeecCCCCCC---CCCccccCCCCCC-----CCCCCCceEecCC-----CCeEEecCCCCcCCCCccccccccCCCCCC
Q psy9685 705 GPICDCPPGYR---GSRCEINIDECAS-----GPCKNSGQCIDDV-----NAFICNCTNTATGASMGCLGEVRLGDLLLP 771 (979)
Q Consensus 705 ~~~C~C~~G~~---G~~C~~~~~~C~~-----~~C~~~g~C~~~~-----g~~~C~C~~g~~g~~~~c~~~~~~~~~~~~ 771 (979)
-+.|.|.+||. -..|+. .-+|.. .+|+..+.|++.. ..|.|.|.+||+.....|.
T Consensus 19 HfEC~Cnegfvl~~EntCE~-kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCv----------- 86 (197)
T PF06247_consen 19 HFECKCNEGFVLKNENTCEE-KVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCV----------- 86 (197)
T ss_dssp EEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEE-----------
T ss_pred ceEEEcCCCcEEcccccccc-ceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeEc-----------
Confidence 46899999998 567873 446653 4699999998765 4689999999887654332
Q ss_pred ccccccCCCcCCCCCCCCcCCCCCCCCCCCCCCCCCccccCCCCcCCCCccccCcccccCCCCCCCCeeeccC---CCCe
Q psy9685 772 YFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQ---PGDY 848 (979)
Q Consensus 772 ~~~~~~~g~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~C~C~~g~~G~~C~~~~~~C~~~~~~C~~~g~C~~~---~gs~ 848 (979)
.++|. .-.|. .|.|+-. +...
T Consensus 87 -----------------------------------------------------p~~C~--~~~Cg-~GKCI~d~~~~~~~ 110 (197)
T PF06247_consen 87 -----------------------------------------------------PNKCN--NKDCG-SGKCILDPDNPNNP 110 (197)
T ss_dssp -----------------------------------------------------EGGGS--S---T-TEEEEEEEGGGSEE
T ss_pred -----------------------------------------------------hhhcC--ceecC-CCeEEecCCCCCCc
Confidence 23443 34565 4788632 2345
Q ss_pred eecCCCCCC---CCCCCC--CCCCCCCCCCCCCeeecCCCCCCCeEeecCCCCCCC
Q psy9685 849 KCACQFDTC---GYLCNF--PDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGK 899 (979)
Q Consensus 849 ~C~C~~g~~---G~~C~~--~~~C~~~~C~~~g~C~~~c~~~~~~~C~C~~G~~G~ 899 (979)
.|+|.-|+. ...|.. ...|. .-|..+..|. ....-|+|.|..|+.+.
T Consensus 111 ~CSC~IGkV~~dn~kCtk~G~T~C~-LKCk~nE~CK---~~~~~Y~C~~~~~~~~~ 162 (197)
T PF06247_consen 111 TCSCNIGKVPDDNKKCTKTGETKCS-LKCKENEECK---LVDGYYKCVCKEGFPGD 162 (197)
T ss_dssp EEEE-TEEETTTTTESEEEE---------TTTEEEE---EETTEEEEEE-TT-EEE
T ss_pred eeEeeeceEeccCCcccCCCcccee-eecCCCccee---eeCcEEEeecCCCCCCC
Confidence 899998875 334532 23343 2355667777 33566899999998743
No 43
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.87 E-value=0.0012 Score=47.18 Aligned_cols=37 Identities=38% Similarity=0.961 Sum_probs=25.5
Q ss_pred CcccccCCCCCCCCeeeccCCCCeeecCCCCCCCCCCC
Q psy9685 825 INECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCN 862 (979)
Q Consensus 825 ~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~G~~C~ 862 (979)
+++|... ..|.+++.|.+..++|.|.|++||.|..|+
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred cccCCCC-CCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 4556421 457767788888888888888888777663
No 44
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=96.82 E-value=0.021 Score=58.59 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=68.2
Q ss_pred CCCeeEEEEeCccccccceeeEEEEEEEEeCC--CCeEEE-EecCCCCCCCCCCCCCCCCCCCEEEEEE-eCcEEEEEEE
Q psy9685 76 TTNSLVTVAVGGVARRAVRNIVDISMFIRTRQ--LRGAIF-YLGGSGDRSSPSSNGAGSEETSYIAAEM-EAGELFVRLQ 151 (979)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~--~~GlLl-y~~~~~~~~~~~~~~~~~~~~dfi~l~L-~~G~l~~~~~ 151 (979)
+...|+.+..... .-...|++++.+|+.. ..+.|| |..+ . ..+.+.+.. ..|++.|.+
T Consensus 15 s~~~yv~l~~~~~---~~l~~fTv~~Wv~~~~~~~~~~ifSy~~~-------------~-~~~~~~l~~~~~g~~~~~i- 76 (201)
T cd00152 15 SDTSYVKLKPELP---KPLQAFTLCLWVYTDLSTREYSLFSYATK-------------G-QDNELLLYKEKDGGYSLYI- 76 (201)
T ss_pred CCCceEEEccCCC---CChhhEEEEEEEEecCCCCCeEEEEEeCC-------------C-CCCeEEEEEcCCCeEEEEE-
Confidence 4567888765222 1237899999999865 334444 5432 1 223344444 457776665
Q ss_pred eCCcceEEeecCeeecCCCcEEEEEEEEc--eEEEEEECCEEeEEEecCcccccccc-eeEEcCC
Q psy9685 152 FNSTPESYNVGGVKLADGNNHLIQVVRNV--TLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGI 213 (979)
Q Consensus 152 ~g~~~~~~~~~~~~lnDg~WH~V~v~r~~--~~~~L~VD~~~~~~~~~~~~~~l~~~-~lyvGG~ 213 (979)
++... ... ....||+||+|.++.+. ..++|.|||.............+... .|.||..
T Consensus 77 -~~~~~--~~~-~~~~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~~~g~l~lG~~ 137 (201)
T cd00152 77 -GGKEV--TFK-VPESDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVGPGGSIILGQE 137 (201)
T ss_pred -cCEEE--EEe-ccCCCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEECCCCeEEEeec
Confidence 33222 222 34599999999999986 46799999987644432222222223 6777754
No 45
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=96.76 E-value=0.036 Score=55.08 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=72.2
Q ss_pred eeEEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCcceEEee------cCeee
Q psy9685 95 NIVDISMFIRTRQLRGA--IFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNV------GGVKL 166 (979)
Q Consensus 95 ~~~~isl~FrT~~~~Gl--Lly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~~~~~~~------~~~~l 166 (979)
...+|.++||+..++++ ||-.++. .....||.|++.++.+-+.+.-..+...... .+...
T Consensus 33 ~~gTI~i~Fk~~~~~~~~sLfsiSn~------------~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~~~ 100 (190)
T PF02973_consen 33 EEGTIVIRFKSDSNSGIQSLFSISNS------------TKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGGYK 100 (190)
T ss_dssp SSEEEEEEEEESS-SSEEEEEEEE-T------------STTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SEET
T ss_pred cccEEEEEEecCCCcceeEEEEecCC------------CCccceEEEEEECCEEEEEEecCCCCcccccccccEeccccc
Confidence 56789999999888886 5655531 1234899999999988888887766333322 23456
Q ss_pred cCCCcEEEEEEEE--ceEEEEEECCEEeEEEec--Ccc--cccccceeEEcCCC
Q psy9685 167 ADGNNHLIQVVRN--VTLVQVKLNGTEYFRKTI--SST--GILDVQVLYLGGIP 214 (979)
Q Consensus 167 nDg~WH~V~v~r~--~~~~~L~VD~~~~~~~~~--~~~--~~l~~~~lyvGG~p 214 (979)
++-.||+|.+.-+ .+..+|.|||..+..... +.. .+.+++.++|||.-
T Consensus 101 ~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~~~n~~~iG~t~ 154 (190)
T PF02973_consen 101 NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIPGLNSVQIGGTN 154 (190)
T ss_dssp TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECTSS-GGGSTT--EEEESSEE
T ss_pred CCceEEEEEEEEecCCCeEEEEeCCeeEEEeccccccHhhcCcCCceEEEcceE
Confidence 7778999999998 689999999965443332 221 22245689999974
No 46
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=96.76 E-value=0.00061 Score=65.42 Aligned_cols=138 Identities=25% Similarity=0.663 Sum_probs=83.2
Q ss_pred CCCCCCeeccCCCceeeecCCCCC---CCccccccccCC-----CCCCCCCCEEeeCC-----CCcEEecCCCcc--cCc
Q psy9685 609 NCQNGARCIDGVARYSCECTPGWE---GALCEKEIDECL-----SNPCMNGGQCEDRL-----AGFVCNCSEEYV--GER 673 (979)
Q Consensus 609 ~C~~~~~C~~~~g~~~C~C~~G~~---G~~C~~~~~~C~-----~~~C~~~g~C~~~~-----~~~~C~C~~G~~--G~~ 673 (979)
.|.++ ..++..+.|.|.|.+||. -..|+.. .+|. ..+|..-+.|.... ..|.|.|.+||+ ...
T Consensus 7 ~CKNG-~LiQMSNHfEC~Cnegfvl~~EntCE~k-v~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~v 84 (197)
T PF06247_consen 7 ICKNG-YLIQMSNHFECKCNEGFVLKNENTCEEK-VECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGV 84 (197)
T ss_dssp --BTE-EEEEESSEEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSS
T ss_pred cccCC-EEEEccCceEEEcCCCcEEccccccccc-eecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCe
Confidence 35544 666777889999999995 4456533 3444 34698889998765 468999999998 345
Q ss_pred cccccccccCCCCCCCCceecCCCCCCCCCCCCeecCCCCCC---CCCcccc-CCCCCCCCCCCCceEecCCCCeEEecC
Q psy9685 674 CESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR---GSRCEIN-IDECASGPCKNSGQCIDDVNAFICNCT 749 (979)
Q Consensus 674 C~~~~~~~c~~~~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~---G~~C~~~-~~~C~~~~C~~~g~C~~~~g~~~C~C~ 749 (979)
|. +..|....|. .|.|+-.... +....|+|.-|+. ...|..+ ..+|.- .|..+..|....+=|+|.|.
T Consensus 85 Cv---p~~C~~~~Cg-~GKCI~d~~~---~~~~~CSC~IGkV~~dn~kCtk~G~T~C~L-KCk~nE~CK~~~~~Y~C~~~ 156 (197)
T PF06247_consen 85 CV---PNKCNNKDCG-SGKCILDPDN---PNNPTCSCNIGKVPDDNKKCTKTGETKCSL-KCKENEECKLVDGYYKCVCK 156 (197)
T ss_dssp EE---EGGGSS---T-TEEEEEEEGG---GSEEEEEE-TEEETTTTTESEEEE---------TTTEEEEEETTEEEEEE-
T ss_pred Ec---hhhcCceecC-CCeEEecCCC---CCCceeEeeeceEeccCCcccCCCccceee-ecCCCcceeeeCcEEEeecC
Confidence 54 4457777777 6788743222 3344899999987 3344311 123332 37788899999999999999
Q ss_pred CCCcCCC
Q psy9685 750 NTATGAS 756 (979)
Q Consensus 750 ~g~~g~~ 756 (979)
+|+.+..
T Consensus 157 ~~~~~~~ 163 (197)
T PF06247_consen 157 EGFPGDG 163 (197)
T ss_dssp TT-EEET
T ss_pred CCCCCCC
Confidence 9987764
No 47
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=96.69 E-value=0.027 Score=58.02 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=58.1
Q ss_pred CCCeeEEEEeCccccccceeeEEEEEEEEeCC--CCeEE-EEecCCCCCCCCCCCCCCCCCCCEEEEEE-eCcEEEEEEE
Q psy9685 76 TTNSLVTVAVGGVARRAVRNIVDISMFIRTRQ--LRGAI-FYLGGSGDRSSPSSNGAGSEETSYIAAEM-EAGELFVRLQ 151 (979)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~--~~GlL-ly~~~~~~~~~~~~~~~~~~~~dfi~l~L-~~G~l~~~~~ 151 (979)
+...|+.+..... .. -+.++|.+.+|+.. .++.| -|..+ . ..+-+.+.. ..|.+.+.+
T Consensus 15 s~~~yv~l~~~~~--~~-l~~fTvc~W~k~~~~~~~~~ifSy~~~-------------~-~~ne~~~~~~~~~~~~l~i- 76 (206)
T smart00159 15 SDTSYVKLKPELP--KP-LQAFTVCLWFYSDLSPRGYSLFSYATK-------------G-QDNELLLYKEKQGEYSLYI- 76 (206)
T ss_pred CCCCeEEEccCCC--CC-hhHEEEEEEEEecCCCCceEEEEEeCC-------------C-CCCeEEEEEcCCcEEEEEE-
Confidence 4467777765321 11 37899999999975 34444 45442 1 122233333 445555544
Q ss_pred eCCcceEEeecCeeecCCCcEEEEEEEEc--eEEEEEECCEEe
Q psy9685 152 FNSTPESYNVGGVKLADGNNHLIQVVRNV--TLVQVKLNGTEY 192 (979)
Q Consensus 152 ~g~~~~~~~~~~~~lnDg~WH~V~v~r~~--~~~~L~VD~~~~ 192 (979)
++. .+.. ...+.||+||+|.++.+. ..++|.|||...
T Consensus 77 -~g~--~~~~-~~~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~ 115 (206)
T smart00159 77 -GGK--KVQF-PVPESDGKWHHICTTWESSSGIAELWVDGKPG 115 (206)
T ss_pred -cCe--EEEe-cccccCCceEEEEEEEECCCCcEEEEECCEEc
Confidence 332 2222 356899999999999986 467899999875
No 48
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.66 E-value=0.0028 Score=45.17 Aligned_cols=35 Identities=46% Similarity=1.074 Sum_probs=30.1
Q ss_pred CCCCCC-CCCCCCceEecCCCCeEEecCCCCcCCCC
Q psy9685 723 IDECAS-GPCKNSGQCIDDVNAFICNCTNTATGASM 757 (979)
Q Consensus 723 ~~~C~~-~~C~~~g~C~~~~g~~~C~C~~g~~g~~~ 757 (979)
+++|.. .+|.+++.|.+..+.|.|.|++||.|..|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C 37 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence 567776 68988899999999999999999998653
No 49
>KOG1218|consensus
Probab=96.58 E-value=0.041 Score=61.00 Aligned_cols=87 Identities=23% Similarity=0.501 Sum_probs=45.8
Q ss_pred EEecCCCcccCccccccccccCCCCCCCCceecCCCCCCCCCCCCeecC-CCCCCCCCccccCCCCCCCCCCCCceEecC
Q psy9685 662 VCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDC-PPGYRGSRCEINIDECASGPCKNSGQCIDD 740 (979)
Q Consensus 662 ~C~C~~G~~G~~C~~~~~~~c~~~~C~~~~~C~~~~~~~~~~~~~~C~C-~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~ 740 (979)
.|.+..+|.+..|+...........|.....|..... .......| ..+|.|..|+ ...+|... |.. .+|.+.
T Consensus 50 ~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~c~~~~~----~~~~~~~~~~~~~~g~~C~-~~~~~~~~-c~~-~~C~~~ 122 (316)
T KOG1218|consen 50 ECGLGYGFVGSVCRIECVCGNAGGGCSQPCRCKNGGT----CVSSTGYCHLNGYEGPQCE-SPCPCGDG-CAE-KTCANP 122 (316)
T ss_pred eEecccccCCCccccccccCCCCCcccCccccCCCCc----ccCCCCcccCCCCCccccc-CCCCcCCc-ccc-cccCCC
Confidence 5666666666666554433333344444444443321 11223344 6889999997 34444433 433 455544
Q ss_pred CCCeEEecCCCCcCCCC
Q psy9685 741 VNAFICNCTNTATGASM 757 (979)
Q Consensus 741 ~g~~~C~C~~g~~g~~~ 757 (979)
.. .|.|..+|.+..|
T Consensus 123 ~~--~c~~~~~~~~~~C 137 (316)
T KOG1218|consen 123 RR--ECRCGGGYIGEQC 137 (316)
T ss_pred cc--ceecCCcCccccc
Confidence 32 5777777776654
No 50
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=96.49 E-value=0.042 Score=53.33 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=50.3
Q ss_pred cceeEEEEEEEeccCCe--EEEEecCCCCCCCCCCCCCCCCccceEEEEEe-cCEEEEEEEcCCcCceeeecCeeecCCC
Q psy9685 291 RNIVDISMFIRTRQLRG--AIFYLGGSGDRSSPSSNGAGSEETSYIAAEME-AGELFVRLQFNSTPESYNVGGVKLADGN 367 (979)
Q Consensus 291 ~~~~~is~~frT~~~~G--lLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~-~G~l~~~~~~g~~~~~~~~~~~~l~DG~ 367 (979)
...++|++.||.....+ .++..... ..+.+.|.+. +|.+.+.+..+.+..........+.+++
T Consensus 21 ~~~fTi~~w~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (157)
T PF13385_consen 21 SGSFTISFWVKPDSPSSSQSFVFMDSS--------------GSGGFGLFINNNGRLRFYIGNGGGGNYSFSSDSNLPDNK 86 (157)
T ss_dssp GTEEEEEEEEEESS--SSEEEEEESSS--------------SSEEEEEEEETTSEEEEEETTSEEESS-EE-BS---TT-
T ss_pred CCCEEEEEEEEeCCCCCCceEEEEecC--------------CCCEEEEEEECCCEEEEEEeCCCceeEEEecCcccCCCC
Confidence 56789999999876543 22222111 2246666675 5777776655432222334566889999
Q ss_pred eeEEEEEeecceeeeEEEEEccCCCc
Q psy9685 368 NHLIQTISSTGILDVQVLYLGGIPET 393 (979)
Q Consensus 368 wH~V~~~~~~~~l~l~vlyvGG~p~~ 393 (979)
||+|.+....+. ..|||.|....
T Consensus 87 W~~l~~~~~~~~---~~lyvnG~~~~ 109 (157)
T PF13385_consen 87 WHHLALTYDGST---VTLYVNGELVG 109 (157)
T ss_dssp EEEEEEEEETTE---EEEEETTEEET
T ss_pred EEEEEEEEECCe---EEEEECCEEEE
Confidence 999999998765 44788776555
No 51
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.44 E-value=0.00098 Score=46.70 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=22.6
Q ss_pred ccCCCCCCCCeeeccCCCCeeecCCCCCCCC
Q psy9685 829 ELSSDMCGNNGECINQPGDYKCACQFDTCGY 859 (979)
Q Consensus 829 ~~~~~~C~~~g~C~~~~gs~~C~C~~g~~G~ 859 (979)
...+..|+.+++|++.+++|.|+|++||.|.
T Consensus 2 ~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 2 LENNGGCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp TTGGGGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCCCCCCcEeecCCCCEEeECCCCCccC
Confidence 3445678889999999999999999999764
No 52
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.40 E-value=0.0038 Score=42.44 Aligned_cols=27 Identities=30% Similarity=0.939 Sum_probs=20.9
Q ss_pred CCCCCCeeeccCCCCeeecCCCCCCCCCC
Q psy9685 833 DMCGNNGECINQPGDYKCACQFDTCGYLC 861 (979)
Q Consensus 833 ~~C~~~g~C~~~~gs~~C~C~~g~~G~~C 861 (979)
..|.++|+|+...+ +|.|.+||.|..|
T Consensus 6 ~~C~~~G~C~~~~g--~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCG--RCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCC--EEECCCCCcCCCC
Confidence 45888888886633 8888888888876
No 53
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.36 E-value=0.0024 Score=44.73 Aligned_cols=30 Identities=20% Similarity=0.620 Sum_probs=23.7
Q ss_pred CCCCCCceEecCCCCeEEecCCCCcCCCCc
Q psy9685 729 GPCKNSGQCIDDVNAFICNCTNTATGASMG 758 (979)
Q Consensus 729 ~~C~~~g~C~~~~g~~~C~C~~g~~g~~~~ 758 (979)
+.|..+++|+++.++|.|.|++||.|++..
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~ 35 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDGFF 35 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCSTC
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCCcC
Confidence 358889999999999999999999998754
No 54
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=96.23 E-value=0.15 Score=51.77 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=64.9
Q ss_pred CCCeeEEEEeCccccccceeeEEEEEEEEeCCC--CeEEE-EecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEe
Q psy9685 76 TTNSLVTVAVGGVARRAVRNIVDISMFIRTRQL--RGAIF-YLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQF 152 (979)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~--~GlLl-y~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~ 152 (979)
+..+|+.+...... + -+.++|.|.+||... .+.|| |+.. .+..+++.+.-..+.+.+.+
T Consensus 9 s~~~yv~l~~~~~~--p-L~~fTvC~w~k~~~~~~~~tifSYat~-------------~~~nell~~~~~~~~~~l~i-- 70 (195)
T PF00354_consen 9 STTDYVRLKPSVPL--P-LSAFTVCFWVKTDDSSNDGTIFSYATS-------------SQDNELLLFGSSSGSLRLYI-- 70 (195)
T ss_dssp BSSBEEEEEESS-S----BSEEEEEEEEEESGSGS-EEEEEEEET-------------TEEEEEEEEEETTTEEEEEE--
T ss_pred CCcceEEEecCCCC--C-cccEEEEEEEEeccCCCceEEEEEccC-------------CCCccEEEEEeCCceEEEEE--
Confidence 45678888763222 2 278999999999876 56555 4332 11223433332346665544
Q ss_pred CCcceEEeecCeeecCCCcEEEEEEEEc--eEEEEEECCEEeEEEecCcccccccc-eeEEcC
Q psy9685 153 NSTPESYNVGGVKLADGNNHLIQVVRNV--TLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGG 212 (979)
Q Consensus 153 g~~~~~~~~~~~~lnDg~WH~V~v~r~~--~~~~L~VD~~~~~~~~~~~~~~l~~~-~lyvGG 212 (979)
++... ... ..+.||+||+|-++.+. ....|.|||.............+... .|.||-
T Consensus 71 ~~~~~--~~~-~~~~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~~gG~~vlGQ 130 (195)
T PF00354_consen 71 NGSSV--SFS-GPIRDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIPGGGTLVLGQ 130 (195)
T ss_dssp TTEEE--EEE-ECS-TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B-SSEEEEESS
T ss_pred CCeEe--Eec-cccCCCCcEEEEEEEecCCcEEEEEECCEecccccccCCceECCCCEEEECc
Confidence 43322 222 46799999999999987 67899999985433332223333333 556664
No 55
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.05 E-value=0.0073 Score=42.25 Aligned_cols=29 Identities=41% Similarity=1.102 Sum_probs=21.5
Q ss_pred CCCCCCeeeccCCCCeeecCCCCCCCC-CC
Q psy9685 833 DMCGNNGECINQPGDYKCACQFDTCGY-LC 861 (979)
Q Consensus 833 ~~C~~~g~C~~~~gs~~C~C~~g~~G~-~C 861 (979)
..|.+++.|++..++|.|.|+.||.|. .|
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence 456667788877777888888888777 54
No 56
>smart00181 EGF Epidermal growth factor-like domain.
Probab=95.91 E-value=0.0093 Score=41.70 Aligned_cols=28 Identities=43% Similarity=1.037 Sum_probs=21.1
Q ss_pred CCCCCCeeeccCCCCeeecCCCCCCC-CCC
Q psy9685 833 DMCGNNGECINQPGDYKCACQFDTCG-YLC 861 (979)
Q Consensus 833 ~~C~~~g~C~~~~gs~~C~C~~g~~G-~~C 861 (979)
..|.++ +|++..++|.|.|++||.| ..|
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence 457666 7887788888888888877 555
No 57
>KOG1218|consensus
Probab=95.74 E-value=0.37 Score=53.30 Aligned_cols=45 Identities=29% Similarity=0.788 Sum_probs=24.5
Q ss_pred CCeecCCCCCCCCCccccCCCCCC-CCCCCCceEecCCCCeEEecCCC
Q psy9685 705 GPICDCPPGYRGSRCEINIDECAS-GPCKNSGQCIDDVNAFICNCTNT 751 (979)
Q Consensus 705 ~~~C~C~~G~~G~~C~~~~~~C~~-~~C~~~g~C~~~~g~~~C~C~~g 751 (979)
...|.|.+||.|..|......|.. ..|.+++.|....+ .|.+.++
T Consensus 161 ~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~~~--~~~~~~~ 206 (316)
T KOG1218|consen 161 NGICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRSTG--SCLCYPG 206 (316)
T ss_pred CCceeccCCcccccccccCCCcCCCcccCCCCeeecccc--ccccCCC
Confidence 346777777777777643333442 23555556665544 3444443
No 58
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=95.73 E-value=0.016 Score=40.50 Aligned_cols=28 Identities=36% Similarity=0.920 Sum_probs=25.3
Q ss_pred CCCCCCCceEecCCCCeEEecCCCCcCC
Q psy9685 728 SGPCKNSGQCIDDVNAFICNCTNTATGA 755 (979)
Q Consensus 728 ~~~C~~~g~C~~~~g~~~C~C~~g~~g~ 755 (979)
..+|.+++.|++..+.|+|.|++||.|.
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 5678888999999999999999999887
No 59
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=95.69 E-value=0.0081 Score=37.59 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=13.5
Q ss_pred CeeecCCCCCC----CCCCCCCCC
Q psy9685 847 DYKCACQFDTC----GYLCNFPDP 866 (979)
Q Consensus 847 s~~C~C~~g~~----G~~C~~~~~ 866 (979)
||+|+|++||. |..|+++||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 57777887773 566766654
No 60
>KOG3509|consensus
Probab=95.60 E-value=0.3 Score=59.96 Aligned_cols=72 Identities=25% Similarity=0.563 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCeeccCCCceeeecCCCCCCCccccccccCCCCC-CCCCCEEeeCCCCcEEecCCCcccCccc
Q psy9685 603 DECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNP-CMNGGQCEDRLAGFVCNCSEEYVGERCE 675 (979)
Q Consensus 603 ~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~-C~~~g~C~~~~~~~~C~C~~G~~G~~C~ 675 (979)
+.|...+|...+.|....-...|.|+.||.|..|+...+.|...+ =...++|....+...+.|.+| .|..+.
T Consensus 407 ~~c~~~p~~~~g~c~p~~~~~~c~c~~g~~G~~c~d~~~~~~~~~~g~y~~t~~~~~~~~~~~c~pg-~g~~~~ 479 (964)
T KOG3509|consen 407 DVCWRIPCQHDGPCLQTLEGKQCLCPPGYTGDSCEDCMNGCDRSPNGSYLGTCVPIQGKRCEYCGPG-AGAPTA 479 (964)
T ss_pred CccccccCCCCccccccccccceeccccccCchhhccCccccccCCccccceEeccCCCcceeecCC-CCCccc
Confidence 668888888888888877778899999999999975444443222 122356665555455677777 555543
No 61
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.58 E-value=0.018 Score=39.19 Aligned_cols=27 Identities=37% Similarity=0.901 Sum_probs=22.6
Q ss_pred CCCCCCCeeecCCCCCCCeEeecCCCCCCCCC
Q psy9685 870 EPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901 (979)
Q Consensus 870 ~~C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C 901 (979)
..|.++|+|+. ..++|.|.+||+|+.|
T Consensus 6 ~~C~~~G~C~~-----~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVS-----PCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeC-----CCCEEECCCCCcCCCC
Confidence 35889999993 2579999999999987
No 62
>smart00181 EGF Epidermal growth factor-like domain.
Probab=95.41 E-value=0.024 Score=39.59 Aligned_cols=28 Identities=46% Similarity=1.152 Sum_probs=24.2
Q ss_pred CCC-CCCCCCceEecCCCCeEEecCCCCcC
Q psy9685 726 CAS-GPCKNSGQCIDDVNAFICNCTNTATG 754 (979)
Q Consensus 726 C~~-~~C~~~g~C~~~~g~~~C~C~~g~~g 754 (979)
|.. .+|.++ .|++..++|+|.|++||.|
T Consensus 2 C~~~~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 2 CASGGPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCcCCCCCC-EEECCCCCeEeECCCCCcc
Confidence 444 578887 9999999999999999998
No 63
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=95.25 E-value=0.0089 Score=41.83 Aligned_cols=24 Identities=33% Similarity=0.930 Sum_probs=19.6
Q ss_pred CCCCCCCeeeccCCCCeeecCCCCCC
Q psy9685 832 SDMCGNNGECINQPGDYKCACQFDTC 857 (979)
Q Consensus 832 ~~~C~~~g~C~~~~gs~~C~C~~g~~ 857 (979)
+..|++ .|++.+++|+|.|++||.
T Consensus 5 NGgC~h--~C~~~~g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 5 NGGCSH--ICVNTPGSYRCSCPPGYK 28 (36)
T ss_dssp GGGSSS--EEEEETTSEEEE-STTEE
T ss_pred CCCcCC--CCccCCCceEeECCCCCE
Confidence 456766 899999999999999994
No 64
>KOG3512|consensus
Probab=95.23 E-value=0.096 Score=57.46 Aligned_cols=52 Identities=23% Similarity=0.564 Sum_probs=29.5
Q ss_pred CCee-cCCCCCCCCCcc--ccC---CCCCCCCCC-CCceEecCCCCeEEecCCCCcCCCCc
Q psy9685 705 GPIC-DCPPGYRGSRCE--INI---DECASGPCK-NSGQCIDDVNAFICNCTNTATGASMG 758 (979)
Q Consensus 705 ~~~C-~C~~G~~G~~C~--~~~---~~C~~~~C~-~~g~C~~~~g~~~C~C~~g~~g~~~~ 758 (979)
+..| .|.+||.-+.-. .+- .+|.-+|=+ -+-+|..+.| +|.|.+|-+|..|+
T Consensus 370 GrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tG--qCpCkeGvtG~tCn 428 (592)
T KOG3512|consen 370 GRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTG--QCPCKEGVTGLTCN 428 (592)
T ss_pred CcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCC--cccCCCCCcccccc
Confidence 3456 588888732211 011 223322222 2346776666 89999999998765
No 65
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.00 E-value=0.01 Score=31.26 Aligned_cols=13 Identities=69% Similarity=1.891 Sum_probs=7.3
Q ss_pred EeecCCCCCCCCC
Q psy9685 889 KCDCLPGWTGKNC 901 (979)
Q Consensus 889 ~C~C~~G~~G~~C 901 (979)
+|+|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3666666666655
No 66
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=94.72 E-value=0.027 Score=35.28 Aligned_cols=20 Identities=40% Similarity=1.301 Sum_probs=17.0
Q ss_pred CeEeecCCCCC----CCCCCcCCC
Q psy9685 887 DYKCDCLPGWT----GKNCTEVPE 906 (979)
Q Consensus 887 ~~~C~C~~G~~----G~~C~~~~~ 906 (979)
+|+|.|++||. |..|.+++|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 58999999997 778988764
No 67
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=94.50 E-value=0.77 Score=45.82 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=55.1
Q ss_pred cceeEEEEEEEeccCCeE--EEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceee--e----cCee
Q psy9685 291 RNIVDISMFIRTRQLRGA--IFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYN--V----GGVK 362 (979)
Q Consensus 291 ~~~~~is~~frT~~~~Gl--Ll~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~--~----~~~~ 362 (979)
..+.+|.++|++.+.+++ ||.++... . ...|++|++.++.+-+.+....+..... . .+..
T Consensus 32 L~~gTI~i~Fk~~~~~~~~sLfsiSn~~----------~--~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~~ 99 (190)
T PF02973_consen 32 LEEGTIVIRFKSDSNSGIQSLFSISNST----------K--GNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGGY 99 (190)
T ss_dssp -SSEEEEEEEEESS-SSEEEEEEEE-TS----------T--TSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SEE
T ss_pred ccccEEEEEEecCCCcceeEEEEecCCC----------C--ccceEEEEEECCEEEEEEecCCCCcccccccccEecccc
Confidence 446689999999877776 67776541 1 4489999999999999888776643332 1 1334
Q ss_pred ecCCCeeEEEEEee--cceeeeEEEEEcc
Q psy9685 363 LADGNNHLIQTISS--TGILDVQVLYLGG 389 (979)
Q Consensus 363 l~DG~wH~V~~~~~--~~~l~l~vlyvGG 389 (979)
.++-.||.|.+..+ .... -||+-|
T Consensus 100 ~~~~~~~tva~~ad~~~~~y---kly~NG 125 (190)
T PF02973_consen 100 KNNVTFNTVAFVADSKNKGY---KLYVNG 125 (190)
T ss_dssp TTEES-EEEEEEEETTTTEE---EEEETT
T ss_pred cCCceEEEEEEEEecCCCeE---EEEeCC
Confidence 56667999998876 3332 267766
No 68
>KOG3509|consensus
Probab=94.18 E-value=0.2 Score=61.50 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=82.1
Q ss_pred CCCEEEEEEeCcEEEEEEEeCCcceEEeecCeeecCCCcEEEEEEEEceEEEEEECCEEeEE--EecCc-ccccccceeE
Q psy9685 133 ETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFR--KTISS-TGILDVQVLY 209 (979)
Q Consensus 133 ~~dfi~l~L~~G~l~~~~~~g~~~~~~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~--~~~~~-~~~l~~~~ly 209 (979)
..+|++|.+..|.+-++++.+.+..... .....-+|+||.+.+.| .-.+.+++..... ..... .++.+...+|
T Consensus 279 ~~~f~~lt~~~g~~g~~~~~~~~~~~~~-~~~~~~~~E~~~~~i~r---~s~~~~~g~~~~l~g~~~~~~~~i~~ee~v~ 354 (964)
T KOG3509|consen 279 KDGFRALTLDGGTDGVRYDCGLPQREDR-LDVTSYIGEWRFGIIFR---GSGLSVSGHKGVLQGNSNILVSRITNEESVF 354 (964)
T ss_pred ccceeeeccCCCCccccccccCcchhhh-hccccccceeeeeEeee---cccccccCcceeecccccccccceeeccccc
Confidence 6789999999998888888887643333 44677899999999999 2245555532221 12222 3333334688
Q ss_pred EcCCCCcccc----------cccccCCC--------------------------ccCCCCCCCCccccCCCCeeeecCCC
Q psy9685 210 LGGIPETVHH----------HRSIRSPY--------------------------QPSRSYPSGGHCTDLWRDFSCSCVRP 253 (979)
Q Consensus 210 vGG~p~~~~~----------~~~~~~~~--------------------------~~~~pc~~~G~C~~~~~~~~C~C~~~ 253 (979)
+||+-..... .+.++.++ ....||...+.|........|.|+.+
T Consensus 355 lg~i~ni~~l~~~~~~~eGf~gci~~~~~~~k~l~~~~~~~~~v~~~~~c~g~~c~~~p~~~~g~c~p~~~~~~c~c~~g 434 (964)
T KOG3509|consen 355 LGGIINIETLQHNLPLPEGFAGCIRDLVMNLKDLRVTLQRASYVAAQGTCLGDVCWRIPCQHDGPCLQTLEGKQCLCPPG 434 (964)
T ss_pred CCceeeeccccccCCCccCccceehhhhhhccccccccccccccccccccCCCccccccCCCCccccccccccceecccc
Confidence 8885221111 11122111 12347888889999999999999999
Q ss_pred CCCCCcccc
Q psy9685 254 FLGHTCQYN 262 (979)
Q Consensus 254 ~~g~~C~~~ 262 (979)
|.|..|+..
T Consensus 435 ~~G~~c~d~ 443 (964)
T KOG3509|consen 435 YTGDSCEDC 443 (964)
T ss_pred ccCchhhcc
Confidence 999999877
No 69
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=94.18 E-value=0.69 Score=47.56 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=50.5
Q ss_pred cceeEEEEEEEecc--CCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCe
Q psy9685 291 RNIVDISMFIRTRQ--LRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNN 368 (979)
Q Consensus 291 ~~~~~is~~frT~~--~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~w 368 (979)
...++|.+.+|+.. .++.||..+... ...+++...-.+|.+.+.+ ++. . + .....+.||+|
T Consensus 30 l~~fTvc~W~k~~~~~~~~~ifSy~~~~------------~~ne~~~~~~~~~~~~l~i--~g~-~-~-~~~~~~~~g~W 92 (206)
T smart00159 30 LQAFTVCLWFYSDLSPRGYSLFSYATKG------------QDNELLLYKEKQGEYSLYI--GGK-K-V-QFPVPESDGKW 92 (206)
T ss_pred hhHEEEEEEEEecCCCCceEEEEEeCCC------------CCCeEEEEEcCCcEEEEEE--cCe-E-E-EecccccCCce
Confidence 45788999999964 456676554321 0223333323556666554 222 1 2 23346899999
Q ss_pred eEEEEEeecceeeeEEEEEccCCC
Q psy9685 369 HLIQTISSTGILDVQVLYLGGIPE 392 (979)
Q Consensus 369 H~V~~~~~~~~l~l~vlyvGG~p~ 392 (979)
|+|.+.+....=. -.||+-|...
T Consensus 93 ~hvc~tw~~~~g~-~~lyvnG~~~ 115 (206)
T smart00159 93 HHICTTWESSSGI-AELWVDGKPG 115 (206)
T ss_pred EEEEEEEECCCCc-EEEEECCEEc
Confidence 9999998754322 2488888764
No 70
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=93.90 E-value=0.019 Score=30.27 Aligned_cols=13 Identities=31% Similarity=0.693 Sum_probs=7.4
Q ss_pred eecCCCCCCCCCC
Q psy9685 849 KCACQFDTCGYLC 861 (979)
Q Consensus 849 ~C~C~~g~~G~~C 861 (979)
.|+|++||.|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3666666666655
No 71
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=93.82 E-value=0.12 Score=45.42 Aligned_cols=20 Identities=25% Similarity=0.855 Sum_probs=15.2
Q ss_pred CcccccCCCCCCCCeeeccC
Q psy9685 825 INECELSSDMCGNNGECINQ 844 (979)
Q Consensus 825 ~~~C~~~~~~C~~~g~C~~~ 844 (979)
.++|....+.|+++|.|++.
T Consensus 5 ~~aC~~~Tn~CsgHG~C~~~ 24 (103)
T PF12955_consen 5 NDACENATNNCSGHGSCVKK 24 (103)
T ss_pred HHHHHHhccCCCCCceEeec
Confidence 35677777888888988866
No 72
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=93.51 E-value=0.099 Score=46.02 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=6.3
Q ss_pred cCCCCC--CCCCC
Q psy9685 892 CLPGWT--GKNCT 902 (979)
Q Consensus 892 C~~G~~--G~~C~ 902 (979)
|..||. +..|.
T Consensus 42 C~~GY~~~~~~Cv 54 (96)
T PTZ00382 42 CNSGFSLDNGKCV 54 (96)
T ss_pred CcCCcccCCCccc
Confidence 667765 44453
No 73
>smart00051 DSL delta serrate ligand.
Probab=92.22 E-value=0.16 Score=40.88 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=31.6
Q ss_pred ccccCCCCcCCCCccccCcccccCCCCCCCCeeeccCCCCeeecCCCCCCCCCC
Q psy9685 808 VQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC 861 (979)
Q Consensus 808 ~~C~C~~g~~G~~C~~~~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~G~~C 861 (979)
+.-.|.++|.|..|+. .|.. ...+.++.+|.. .| .|.|.+||.|..|
T Consensus 17 ~rv~C~~~~yG~~C~~---~C~~-~~d~~~~~~Cd~-~G--~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCDENYYGEGCNK---FCRP-RDDFFGHYTCDE-NG--NKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCCCCCcCCccCC---EeCc-CccccCCccCCc-CC--CEecCCCCcCCCC
Confidence 3456778999999973 3431 223556667754 34 7888899988876
No 74
>PF15102 TMEM154: TMEM154 protein family
Probab=92.14 E-value=0.092 Score=49.03 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCCc
Q psy9685 932 LISMAVLCLMARQKRGRRGTYSPSSQ 957 (979)
Q Consensus 932 l~~~~~~~~~~r~~r~~~~~~~~~~~ 957 (979)
++++++++++.||||.++..++...+
T Consensus 72 Ll~vV~lv~~~kRkr~K~~~ss~gsq 97 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTKQEPSSQGSQ 97 (146)
T ss_pred HHHHHHheeEEeecccCCCCcccccc
Confidence 33334444444555554443433333
No 75
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=92.02 E-value=2.4 Score=43.39 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=50.2
Q ss_pred cceeEEEEEEEecc--CCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCe
Q psy9685 291 RNIVDISMFIRTRQ--LRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNN 368 (979)
Q Consensus 291 ~~~~~is~~frT~~--~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~w 368 (979)
...|+|.+.+|+.. ..+.||..+..+ ...+++...-.+|++.+.+. .... .. ...+.||+|
T Consensus 30 l~~fTv~~Wv~~~~~~~~~~ifSy~~~~------------~~~~~~l~~~~~g~~~~~i~--~~~~--~~-~~~~~~g~W 92 (201)
T cd00152 30 LQAFTLCLWVYTDLSTREYSLFSYATKG------------QDNELLLYKEKDGGYSLYIG--GKEV--TF-KVPESDGAW 92 (201)
T ss_pred hhhEEEEEEEEecCCCCCeEEEEEeCCC------------CCCeEEEEEcCCCeEEEEEc--CEEE--EE-eccCCCCCE
Confidence 45688999999864 456666443321 02233333334577777653 2221 11 224599999
Q ss_pred eEEEEEeecceeeeEEEEEccCCCc
Q psy9685 369 HLIQTISSTGILDVQVLYLGGIPET 393 (979)
Q Consensus 369 H~V~~~~~~~~l~l~vlyvGG~p~~ 393 (979)
|+|.+......=. ..||+.|.+..
T Consensus 93 ~hv~~t~d~~~g~-~~lyvnG~~~~ 116 (201)
T cd00152 93 HHICVTWESTSGI-AELWVNGKLSV 116 (201)
T ss_pred EEEEEEEECCCCc-EEEEECCEEec
Confidence 9999988754211 24889887654
No 76
>KOG1834|consensus
Probab=91.61 E-value=1.1 Score=51.44 Aligned_cols=90 Identities=10% Similarity=0.149 Sum_probs=65.8
Q ss_pred cceeeEEEEEEEEeCC-------CCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCc------ceE
Q psy9685 92 AVRNIVDISMFIRTRQ-------LRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNST------PES 158 (979)
Q Consensus 92 ~~~~~~~isl~FrT~~-------~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~------~~~ 158 (979)
.+...|+|||++|--. ..-.||-+.+ ........++|++.+=+|.|.+.-..+ +..
T Consensus 363 ~l~dhFTlSfwMkHg~~p~~~~~eketIlCnsd-----------k~emnrhHyslyvh~Crl~fllr~d~~~~~~fRpae 431 (952)
T KOG1834|consen 363 SLPDHFTLSFWMKHGPGPKDEQSEKETILCNSD-----------KTEMNRHHYSLYVHGCRLEFLLRRDAGATSDFRPAE 431 (952)
T ss_pred CCCCceEEEEeeecCCCCccccccceeEEeccc-----------ccccccceeEEEEeccEEEEEEccCccccccccchh
Confidence 5668899999998433 2236777664 222255689999999999998876443 122
Q ss_pred EeecCeeecCCCcEEEEEEEEceEEEEEECCEEe
Q psy9685 159 YNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEY 192 (979)
Q Consensus 159 ~~~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~ 192 (979)
..-.-..+-|++||+-.+..+.-.++|+|||...
T Consensus 432 f~Wkl~qVCD~EWH~Y~ln~efp~VtlyvDG~Sf 465 (952)
T KOG1834|consen 432 FHWKLPQVCDNEWHHYVLNVEFPDVTLYVDGKSF 465 (952)
T ss_pred eeccchhhhhhhhheeEEeecCceEEEEEcCccc
Confidence 2224467899999999999999999999999654
No 77
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=91.34 E-value=2.4 Score=40.11 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=29.5
Q ss_pred CCcEEEEEEEEc--eEEEEEECCEEeEEEecCcccccccceeEEcC
Q psy9685 169 GNNHLIQVVRNV--TLVQVKLNGTEYFRKTISSTGILDVQVLYLGG 212 (979)
Q Consensus 169 g~WH~V~v~r~~--~~~~L~VD~~~~~~~~~~~~~~l~~~~lyvGG 212 (979)
|+||+|.+..+. ..++|+|||......... ......++.||.
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~--~~~~~~~~~iG~ 104 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ--PSPSSGNLPQGG 104 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECCEEccccccC--CcccCCceEEee
Confidence 999999999998 789999999766433221 111223777873
No 78
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=91.33 E-value=0.16 Score=51.19 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=53.0
Q ss_pred eeEEEEEEEEe-CCCC-eEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCcceE-------EeecCee
Q psy9685 95 NIVDISMFIRT-RQLR-GAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPES-------YNVGGVK 165 (979)
Q Consensus 95 ~~~~isl~FrT-~~~~-GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~~~~-------~~~~~~~ 165 (979)
..+.|+++||. ...+ ||+|...+. .........+.++|.++.-........+... .......
T Consensus 53 ~df~l~~d~k~~~~~~sGi~~r~~~~---------~~~~~~~~gy~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 123 (185)
T PF06439_consen 53 SDFELEVDFKITPGGNSGIFFRAQSP---------GDGQDWNNGYEFQIDNSGGGTGLPNSTGSLYDEPPWQLEPSVNVA 123 (185)
T ss_dssp SSEEEEEEEEE-TT-EEEEEEEESSE---------CCSSGGGTSEEEEEE-TTTCSTTTTSTTSBTTTB-TCB-SSS--S
T ss_pred ccEEEEEEEEECCCCCeEEEEEeccc---------cCCCCcceEEEEEEECCCCccCCCCccceEEEecccccccccccc
Confidence 77899999994 4444 555543310 0111233456777765433211111122111 1234567
Q ss_pred ecCCCcEEEEEEEEceEEEEEECCEEeEEEec
Q psy9685 166 LADGNNHLIQVVRNVTLVQVKLNGTEYFRKTI 197 (979)
Q Consensus 166 lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~ 197 (979)
+..|+||+++|+-.+..+++.|||..+.....
T Consensus 124 ~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d 155 (185)
T PF06439_consen 124 IPPGEWNTVRIVVKGNRITVWVNGKPVADFTD 155 (185)
T ss_dssp --TTSEEEEEEEEETTEEEEEETTEEEEEEET
T ss_pred CCCCceEEEEEEEECCEEEEEECCEEEEEEEc
Confidence 89999999999999999999999998766654
No 79
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=91.28 E-value=0.24 Score=44.60 Aligned_cols=38 Identities=26% Similarity=0.683 Sum_probs=27.2
Q ss_pred Cccccc-CCCCCCCCeeeccCC--CCeeecCCCCCCCCCCCC
Q psy9685 825 INECEL-SSDMCGNNGECINQP--GDYKCACQFDTCGYLCNF 863 (979)
Q Consensus 825 ~~~C~~-~~~~C~~~g~C~~~~--gs~~C~C~~g~~G~~C~~ 863 (979)
+.+|.. ..+.|-| |+|.-.+ ..+.|.|..||+|.+|+.
T Consensus 42 i~~Cp~ey~~YClH-G~C~yI~dl~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 42 IRLCGPEGDGYCLH-GDCIHARDIDGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred cccCChhhCCEeEC-CEEEeeccCCCceeECCCCcccccccc
Confidence 345532 2356777 4896443 678999999999999985
No 80
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=90.70 E-value=1.7 Score=44.24 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=49.5
Q ss_pred cceeEEEEEEEeccC--CeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeeecCeeecCCCe
Q psy9685 291 RNIVDISMFIRTRQL--RGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNN 368 (979)
Q Consensus 291 ~~~~~is~~frT~~~--~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~~~~~l~DG~w 368 (979)
...++|-|.+||... .+.||..+... ...+++.+.-..+.+.+.+ ++.. .. ....+.||+|
T Consensus 24 L~~fTvC~w~k~~~~~~~~tifSYat~~------------~~nell~~~~~~~~~~l~i--~~~~--~~-~~~~~~~~~W 86 (195)
T PF00354_consen 24 LSAFTVCFWVKTDDSSNDGTIFSYATSS------------QDNELLLFGSSSGSLRLYI--NGSS--VS-FSGPIRDGQW 86 (195)
T ss_dssp BSEEEEEEEEEESGSGS-EEEEEEEETT------------EEEEEEEEEETTTEEEEEE--TTEE--EE-EEECS-TSS-
T ss_pred cccEEEEEEEEeccCCCceEEEEEccCC------------CCccEEEEEeCCceEEEEE--CCeE--eE-eccccCCCCc
Confidence 457899999999775 78888765431 1234544433456776655 2222 22 2345789999
Q ss_pred eEEEEEeecceeeeEEEEEccC
Q psy9685 369 HLIQTISSTGILDVQVLYLGGI 390 (979)
Q Consensus 369 H~V~~~~~~~~l~l~vlyvGG~ 390 (979)
|+|-+.+....-.+ .+|+.|.
T Consensus 87 hh~C~tW~s~~G~~-~ly~dG~ 107 (195)
T PF00354_consen 87 HHICVTWDSSTGRW-QLYVDGV 107 (195)
T ss_dssp EEEEEEEETTTTEE-EEEETTE
T ss_pred EEEEEEEecCCcEE-EEEECCE
Confidence 99999887643222 3788887
No 81
>smart00051 DSL delta serrate ligand.
Probab=90.31 E-value=0.37 Score=38.76 Aligned_cols=45 Identities=31% Similarity=0.682 Sum_probs=32.3
Q ss_pred eecCCCCCCCCCCCCCCCCCC-CCCCCCCeeecCCCCCCCeEeecCCCCCCCCC
Q psy9685 849 KCACQFDTCGYLCNFPDPCKD-EPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901 (979)
Q Consensus 849 ~C~C~~g~~G~~C~~~~~C~~-~~C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C 901 (979)
.=.|.++|.|..|+. .|.. +.+..+..|.. .+.|.|.+||+|..|
T Consensus 18 rv~C~~~~yG~~C~~--~C~~~~d~~~~~~Cd~------~G~~~C~~Gw~G~~C 63 (63)
T smart00051 18 RVTCDENYYGEGCNK--FCRPRDDFFGHYTCDE------NGNKGCLEGWMGPYC 63 (63)
T ss_pred EeeCCCCCcCCccCC--EeCcCccccCCccCCc------CCCEecCCCCcCCCC
Confidence 337889999999963 3432 12456677762 478999999999987
No 82
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=90.24 E-value=0.24 Score=51.74 Aligned_cols=41 Identities=32% Similarity=0.748 Sum_probs=34.0
Q ss_pred CcCCCCccccCcccccCCCCCCCCeeeccCCCCeeecCCCCCCC
Q psy9685 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCG 858 (979)
Q Consensus 815 g~~G~~C~~~~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~G 858 (979)
...+..|+ +.++|...++.|.+ .|.++.|+|.|.|++||..
T Consensus 178 ~l~~~~C~-~~~~C~~~~~~c~~--~C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 178 KFQGKICV-VPDLCATLSHVCQQ--VCISTPGSYLCACTEGYAL 218 (224)
T ss_pred hcccccCc-CchhhcCCCCCccc--eEEcCCCCEEeECCCCccC
Confidence 34577786 78999877778875 7999999999999999964
No 83
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=90.06 E-value=0.2 Score=35.09 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=18.6
Q ss_pred CceEecCCCCeEEecCCCCcCCC
Q psy9685 734 SGQCIDDVNAFICNCTNTATGAS 756 (979)
Q Consensus 734 ~g~C~~~~g~~~C~C~~g~~g~~ 756 (979)
...|++.+++|+|.|++||....
T Consensus 9 ~h~C~~~~g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 9 SHICVNTPGSYRCSCPPGYKLAE 31 (36)
T ss_dssp SSEEEEETTSEEEE-STTEEE-T
T ss_pred CCCCccCCCceEeECCCCCEECc
Confidence 36899999999999999998764
No 84
>KOG3607|consensus
Probab=89.20 E-value=1.2 Score=53.90 Aligned_cols=29 Identities=31% Similarity=0.969 Sum_probs=24.1
Q ss_pred CCCCCCeeecCCCCCCCeEeecCCCCCCCCCCcCC
Q psy9685 871 PCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVP 905 (979)
Q Consensus 871 ~C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C~~~~ 905 (979)
.|..+|+|.+ ...|.|.+||.+..|+...
T Consensus 631 ~C~g~GVCnn------~~~ChC~~gwapp~C~~~~ 659 (716)
T KOG3607|consen 631 TCNGHGVCNN------ELNCHCEPGWAPPFCFIFG 659 (716)
T ss_pred ccCCCcccCC------CcceeeCCCCCCCcccccc
Confidence 3888999983 4689999999999998653
No 85
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=88.06 E-value=0.51 Score=49.34 Aligned_cols=40 Identities=25% Similarity=0.475 Sum_probs=29.7
Q ss_pred CCCccccCCCCCCCCCCCCceEecCCCCeEEecCCCCcCCC
Q psy9685 716 GSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGAS 756 (979)
Q Consensus 716 G~~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~g~~g~~ 756 (979)
+..|+ ++++|...++.....|.++.|+|.|.|++||+...
T Consensus 181 ~~~C~-~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~ 220 (224)
T cd01475 181 GKICV-VPDLCATLSHVCQQVCISTPGSYLCACTEGYALLE 220 (224)
T ss_pred cccCc-CchhhcCCCCCccceEEcCCCCEEeECCCCccCCC
Confidence 45564 66777654433346899999999999999998743
No 86
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=85.45 E-value=13 Score=34.96 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=19.3
Q ss_pred CCeeEEEEEeecceeeeEEEEEccCCCc
Q psy9685 366 GNNHLIQTISSTGILDVQVLYLGGIPET 393 (979)
Q Consensus 366 G~wH~V~~~~~~~~l~l~vlyvGG~p~~ 393 (979)
|+||+|.+..+...-. ..|||.|.+..
T Consensus 61 ~~W~hva~v~d~~~g~-~~lYvnG~~~~ 87 (133)
T smart00560 61 GVWVHLAGVYDGGAGK-LSLYVNGVEVA 87 (133)
T ss_pred CCEEEEEEEEECCCCe-EEEEECCEEcc
Confidence 9999999998863212 24789887654
No 87
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=84.31 E-value=22 Score=36.90 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=51.7
Q ss_pred eeEEEEEEEEeC-----CCCeEEEEecCCCCCCCCC----CCCCCCCCCCEEEEEEe---Cc------EEEEEEEeCCcc
Q psy9685 95 NIVDISMFIRTR-----QLRGAIFYLGGSGDRSSPS----SNGAGSEETSYIAAEME---AG------ELFVRLQFNSTP 156 (979)
Q Consensus 95 ~~~~isl~FrT~-----~~~GlLly~~~~~~~~~~~----~~~~~~~~~dfi~l~L~---~G------~l~~~~~~g~~~ 156 (979)
..|+++|.|+-. ..+||=|............ ...........|+|++. +. .-++.++..+..
T Consensus 54 ~~F~~~F~f~i~~~~~~~gdG~aF~l~~~~~~~~~~~g~~~~lG~~~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~ 133 (223)
T cd01951 54 KDFTTTFKFYLGTKGTNGADGIAFVLQNDPAGALGGGGGGGGLGYGGIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNG 133 (223)
T ss_pred CCEEEEEEEEEeCCCCCCCCcEEEEEecCCCCccccCCCCCccCccccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCC
Confidence 567777777653 4789877766421111000 11122233567888873 11 224455544331
Q ss_pred e------EEee--cCeeecCCCcEEEEEEEEc--eEEEEEECCEE
Q psy9685 157 E------SYNV--GGVKLADGNNHLIQVVRNV--TLVQVKLNGTE 191 (979)
Q Consensus 157 ~------~~~~--~~~~lnDg~WH~V~v~r~~--~~~~L~VD~~~ 191 (979)
. .+.. .......|+||+|.|..+. +.+++.|+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~ 178 (223)
T cd01951 134 NNTALATSLGSASLPNGTGLGNEHTVRITYDPTTNTLTVYLDNGS 178 (223)
T ss_pred CCcccccccceeeCCCccCCCCEEEEEEEEeCCCCEEEEEECCCC
Confidence 1 1111 1111222999999999995 78888888753
No 88
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=82.93 E-value=0.95 Score=31.65 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=17.2
Q ss_pred CCCCCCCCCCEEeeCC-CCcEEecCCCcc
Q psy9685 643 CLSNPCMNGGQCEDRL-AGFVCNCSEEYV 670 (979)
Q Consensus 643 C~~~~C~~~g~C~~~~-~~~~C~C~~G~~ 670 (979)
|....|..++.|.... |.+.|.|..||.
T Consensus 2 C~~~~cP~NA~C~~~~dG~eecrCllgyk 30 (37)
T PF12946_consen 2 CIDTKCPANAGCFRYDDGSEECRCLLGYK 30 (37)
T ss_dssp -SSS---TTEEEEEETTSEEEEEE-TTEE
T ss_pred ccCccCCCCcccEEcCCCCEEEEeeCCcc
Confidence 4445677778887665 778888888886
No 89
>PHA02887 EGF-like protein; Provisional
Probab=82.24 E-value=1.3 Score=39.32 Aligned_cols=31 Identities=35% Similarity=0.745 Sum_probs=20.0
Q ss_pred CCCCCeeecCCCCCCCeEeecCCCCCCCCCCcC
Q psy9685 872 CQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEV 904 (979)
Q Consensus 872 C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C~~~ 904 (979)
|. +|+|.-. .......|.|..||+|.+|+..
T Consensus 94 Ci-HG~C~yI-~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 94 CI-NGECMNI-IDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred ee-CCEEEcc-ccCCCceeECCCCcccCCCCcc
Confidence 55 3577633 2245567888888888888753
No 90
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=82.19 E-value=0.68 Score=32.35 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCCCCCCCCceEecCC-CCeEEecCCCCcCCCC
Q psy9685 726 CASGPCKNSGQCIDDV-NAFICNCTNTATGASM 757 (979)
Q Consensus 726 C~~~~C~~~g~C~~~~-g~~~C~C~~g~~g~~~ 757 (979)
|....|..++.|.+.. |+++|.|..||...+.
T Consensus 2 C~~~~cP~NA~C~~~~dG~eecrCllgyk~~~~ 34 (37)
T PF12946_consen 2 CIDTKCPANAGCFRYDDGSEECRCLLGYKKVGG 34 (37)
T ss_dssp -SSS---TTEEEEEETTSEEEEEE-TTEEEETT
T ss_pred ccCccCCCCcccEEcCCCCEEEEeeCCccccCC
Confidence 5556788899998765 9999999999976543
No 91
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=81.44 E-value=1.1 Score=48.14 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9685 919 IIGPILAILLLGGLISMAVLCLMARQKRG 947 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~~r~~r~ 947 (979)
+.+.+++++++++++++++++++.||+++
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666666666666555544
No 92
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=80.23 E-value=0.63 Score=36.79 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=2.2
Q ss_pred HHHhhhhhccccCCCCCCCcc
Q psy9685 938 LCLMARQKRGRRGTYSPSSQE 958 (979)
Q Consensus 938 ~~~~~r~~r~~~~~~~~~~~e 958 (979)
++++.|.|++.++.|.-.+..
T Consensus 30 lf~iyR~rkkdEGSY~l~e~K 50 (64)
T PF01034_consen 30 LFLIYRMRKKDEGSYDLDEPK 50 (64)
T ss_dssp -------S------SS--S--
T ss_pred HHHHHHHHhcCCCCccCCCCC
Confidence 333445555666666544433
No 93
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=78.71 E-value=2.1 Score=44.67 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccC
Q psy9685 921 GPILAILLLGGLISMAVLCLMARQKRGRRG 950 (979)
Q Consensus 921 ~~~~~~lll~~l~~~~~~~~~~r~~r~~~~ 950 (979)
|+.+++||+++++++++.+|..|||++.++
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 334444444444445555555555544443
No 94
>KOG1025|consensus
Probab=78.14 E-value=9.7 Score=46.03 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=9.4
Q ss_pred hhhHHHHHhhhhcccce
Q psy9685 3 ALVMHCILLFVAINSSH 19 (979)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (979)
||.. .+++++.++++.
T Consensus 6 ~l~~-~~~l~~~~~~s~ 21 (1177)
T KOG1025|consen 6 ALAV-LGLLLVLAPTSA 21 (1177)
T ss_pred hHHH-HHHHHhhcCccc
Confidence 3444 666777766654
No 95
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=77.87 E-value=15 Score=38.18 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=43.7
Q ss_pred CCEEEEEEeCcEEEEEEEeCC----cceEEeecCeeecCCCcEEEEEEEEc-----eEEEEEECCEEeEE
Q psy9685 134 TSYIAAEMEAGELFVRLQFNS----TPESYNVGGVKLADGNNHLIQVVRNV-----TLVQVKLNGTEYFR 194 (979)
Q Consensus 134 ~dfi~l~L~~G~l~~~~~~g~----~~~~~~~~~~~lnDg~WH~V~v~r~~-----~~~~L~VD~~~~~~ 194 (979)
.-.++|.|.+|++.+.+..+. ...........+.-|+||+|+|.-.- ..+.|.+||..+..
T Consensus 113 ~P~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~ 182 (224)
T PF14099_consen 113 SPPFALRIKGGRLYLRVRGDEPSDSGNKAYSVDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVD 182 (224)
T ss_dssp EECEEEEEETTEEEEEEEEE-TCEEEEEEEEEECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCE
T ss_pred CCcEEEEEeCCEEEEEEEcCCCCcccceeEeecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEE
Confidence 357999999999999988776 12223334567888999999887754 56789999976543
No 96
>PTZ00370 STEVOR; Provisional
Probab=76.07 E-value=2.3 Score=44.53 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy9685 922 PILAILLLGGLISMAVLCLMARQKRGRR 949 (979)
Q Consensus 922 ~~~~~lll~~l~~~~~~~~~~r~~r~~~ 949 (979)
+.+++||+++++++++.+|..|||++.+
T Consensus 259 iaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3444444444444444445445544433
No 97
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=74.06 E-value=1.2 Score=54.89 Aligned_cols=57 Identities=23% Similarity=0.551 Sum_probs=32.9
Q ss_pred eeecCCCCCC----CCCCCCCCCCCC-----CCCCCCCee-----------------ecCCCC---CCCeEeecCCCCC-
Q psy9685 848 YKCACQFDTC----GYLCNFPDPCKD-----EPCQNGGTC-----------------HEDCRH---QADYKCDCLPGWT- 897 (979)
Q Consensus 848 ~~C~C~~g~~----G~~C~~~~~C~~-----~~C~~~g~C-----------------~~~c~~---~~~~~C~C~~G~~- 897 (979)
-.|.|..||. +..|.....|.+ ..|...+.| ...|.. .....|+|..||.
T Consensus 682 ~~C~C~~g~~p~~~~~~C~~~~~C~~~~~gC~~C~~~g~C~~C~~~~~~vq~~~~~C~~~C~~~~~~~~~vC~C~~g~~l 761 (800)
T PTZ00214 682 RRCWCERGFLPALDRSGCVLPTECPPDMPSCAACDESGRCLLCVTSGHNVQVDQRTCAEGCGARASSNQGVCMCELDAVL 761 (800)
T ss_pred ceeEecCCcccccCCCccccccCCCcccccccccCCCCceeeccccCcccccCCCccccCCCCCccccCCeEEeCCccee
Confidence 3789998884 667765444432 123344444 333332 2246899999986
Q ss_pred -CCCCCcC
Q psy9685 898 -GKNCTEV 904 (979)
Q Consensus 898 -G~~C~~~ 904 (979)
+..|...
T Consensus 762 ~~~~c~~~ 769 (800)
T PTZ00214 762 TKGVCVPA 769 (800)
T ss_pred cCCeeEec
Confidence 6677543
No 98
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=73.89 E-value=64 Score=33.30 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=22.9
Q ss_pred ecCCCcEEEEEEEEc--eEEEEEECCEEeEE
Q psy9685 166 LADGNNHLIQVVRNV--TLVQVKLNGTEYFR 194 (979)
Q Consensus 166 lnDg~WH~V~v~r~~--~~~~L~VD~~~~~~ 194 (979)
-|.+.-.+|+|+... ..+.|.||+.....
T Consensus 148 rn~~~p~~iri~Y~~~~~~l~v~vd~~~Cf~ 178 (215)
T cd06903 148 QDSGVPSTIRLSYDALNSLFKVQVDNRLCFQ 178 (215)
T ss_pred cCCCCCEEEEEEEECCCCEEEEEECCCEEEe
Confidence 466677899999988 88899999875543
No 99
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=71.87 E-value=3.5 Score=38.87 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q psy9685 923 ILAILLLGGLISMAVLCLMARQK 945 (979)
Q Consensus 923 ~~~~lll~~l~~~~~~~~~~r~~ 945 (979)
++++++|+++++++++-.+++|+
T Consensus 7 iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333444444445566655
No 100
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=71.83 E-value=8.6 Score=43.79 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=23.1
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy9685 913 VDLALLIIGPILAILLLGGLISMAVLCLMARQK 945 (979)
Q Consensus 913 ~~~~~~~~~~~~~~lll~~l~~~~~~~~~~r~~ 945 (979)
.+..+|+.+.|++|++|+.||.+|.||++.|.|
T Consensus 364 LstgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 344555677777777787788777777776665
No 101
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=71.50 E-value=3.4 Score=28.20 Aligned_cols=21 Identities=29% Similarity=0.786 Sum_probs=14.8
Q ss_pred eeecCCCCCCCeEeecCCCCC
Q psy9685 877 TCHEDCRHQADYKCDCLPGWT 897 (979)
Q Consensus 877 ~C~~~c~~~~~~~C~C~~G~~ 897 (979)
.|-..|+....++|.|++||.
T Consensus 7 ~CpA~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 7 ECPADCDPNSPGQCFCPEGYI 27 (34)
T ss_pred cCCCccCCCCCCceeCCCceE
Confidence 344445555677999999995
No 102
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=71.10 E-value=4.4 Score=30.29 Aligned_cols=17 Identities=35% Similarity=1.046 Sum_probs=12.9
Q ss_pred CCCeecCCCCCCCCCcc
Q psy9685 704 QGPICDCPPGYRGSRCE 720 (979)
Q Consensus 704 ~~~~C~C~~G~~G~~C~ 720 (979)
..++|.|+++++|..|+
T Consensus 16 ~~G~C~C~~~~~G~~C~ 32 (46)
T smart00180 16 DTGQCECKPNVTGRRCD 32 (46)
T ss_pred CCCEEECCCCCCCCCCC
Confidence 34578888888888775
No 103
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=70.28 E-value=11 Score=31.84 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCCCc
Q psy9685 931 GLISMAVLCLMARQKRGRRGTYSPSSQ 957 (979)
Q Consensus 931 ~l~~~~~~~~~~r~~r~~~~~~~~~~~ 957 (979)
++++++|++....|+|.++..|.|--.
T Consensus 45 il~VilwfvCC~kRkrsRrPIYrPvI~ 71 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKRSRRPIYRPVIG 71 (94)
T ss_pred HHHHHHHHHHHHHhhhccCCccccccc
Confidence 444555666666667777777877655
No 104
>PTZ00046 rifin; Provisional
Probab=68.78 E-value=3.6 Score=45.02 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9685 919 IIGPILAILLLGGLISMAVLCLMARQKRG 947 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~~r~~r~ 947 (979)
++..++++++++|+.++++++++.|||++
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 45555666666666666666666666544
No 105
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=68.57 E-value=3.7 Score=44.79 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9685 919 IIGPILAILLLGGLISMAVLCLMARQKRG 947 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~~r~~r~ 947 (979)
++..++++++++|+.++++++++.|||++
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 45555666666666666666666666544
No 106
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=68.56 E-value=9.1 Score=35.35 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=4.3
Q ss_pred HHHHhhhhhcc
Q psy9685 937 VLCLMARQKRG 947 (979)
Q Consensus 937 ~~~~~~r~~r~ 947 (979)
++++..+||+|
T Consensus 48 li~lcssRKkK 58 (189)
T PF05568_consen 48 LIYLCSSRKKK 58 (189)
T ss_pred HHHHHhhhhHH
Confidence 33334444433
No 107
>PHA02887 EGF-like protein; Provisional
Probab=67.84 E-value=3.9 Score=36.48 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCCCCCccc--cCCCCeeeecCCCCCCCCcccc
Q psy9685 232 SYPSGGHCT--DLWRDFSCSCVRPFLGHTCQYN 262 (979)
Q Consensus 232 pc~~~G~C~--~~~~~~~C~C~~~~~g~~C~~~ 262 (979)
-|. +|+|. ...+.+.|.|+.+|+|.+|+..
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 455 47997 5567799999999999999863
No 108
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=67.15 E-value=15 Score=33.11 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9685 924 LAILLLGGLISMAVLCL 940 (979)
Q Consensus 924 ~~~lll~~l~~~~~~~~ 940 (979)
++++||+++++-++.|+
T Consensus 7 l~llLll~l~asl~~wr 23 (107)
T PF15330_consen 7 LALLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 109
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=66.79 E-value=4 Score=37.09 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=0.0
Q ss_pred hhhhhHHHH
Q psy9685 919 IIGPILAIL 927 (979)
Q Consensus 919 ~~~~~~~~l 927 (979)
+++.++.++
T Consensus 81 i~~sal~v~ 89 (129)
T PF12191_consen 81 ILGSALSVV 89 (129)
T ss_dssp ---------
T ss_pred hhhhHHHHH
Confidence 333333333
No 110
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=66.28 E-value=3.7 Score=31.08 Aligned_cols=18 Identities=39% Similarity=0.912 Sum_probs=14.9
Q ss_pred CCeEeecCCCCCCCCCCc
Q psy9685 886 ADYKCDCLPGWTGKNCTE 903 (979)
Q Consensus 886 ~~~~C~C~~G~~G~~C~~ 903 (979)
.+++|.|.++|+|..|+.
T Consensus 16 ~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 16 STGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp TCEEESBSTTEESTTS-E
T ss_pred CCCEEeccccccCCcCcC
Confidence 578999999999999985
No 111
>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domain and two receptor binding domains []. This domain is the N-terminal receptor binding domain, which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif []. The role of this domain in receptor binding appears to be indirect. ; GO: 0004222 metalloendopeptidase activity, 0050827 toxin receptor binding, 0009405 pathogenesis, 0051609 inhibition of neurotransmitter uptake, 0005576 extracellular region; PDB: 3RSJ_B 3FUQ_A 3FFZ_B 1G9B_A 1S0F_A 1Z0H_B 1F31_A 1G9D_A 1S0C_A 1S0D_A ....
Probab=65.89 E-value=1.4e+02 Score=29.47 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=72.5
Q ss_pred ccccccccCCCeeEEEEeCccc-cccceeeEEEEEEEEeCCCCeE--------EEEecCCCCCCCCCCCCCCCCCCCEEE
Q psy9685 68 AATFGHENTTNSLVTVAVGGVA-RRAVRNIVDISMFIRTRQLRGA--------IFYLGGSGDRSSPSSNGAGSEETSYIA 138 (979)
Q Consensus 68 a~~Fg~~~~~~s~~~~~~~~~~-~~~~~~~~~isl~FrT~~~~Gl--------Lly~~~~~~~~~~~~~~~~~~~~dfi~ 138 (979)
..+|++..+..|.+.+...... ...+...|+|+|..|....+-. |.=.- +..-=-.
T Consensus 27 ~n~~~L~~s~~s~v~V~~~n~i~yN~m~~nFSIsFWlRipk~~~~~~~~neytII~~~---------------~nNsGWk 91 (195)
T PF07953_consen 27 KNQFKLNSSNQSKVIVSQNNDIFYNSMYNNFSISFWLRIPKYDNNINLNNEYTIINCM---------------KNNSGWK 91 (195)
T ss_dssp TTEEEEESSTTCEEEEEEETTGSCSCSSSEEEEEEEEEEECHHCCHHTTSEEEEEEEE---------------ETTEEEE
T ss_pred cceEEEccCCcccEEEEeeeeEEEeccccceEEEEEEEccCcccccccCcceEEEEee---------------cCCCceE
Confidence 3467776566777777763332 2356689999999997643322 11111 0223356
Q ss_pred EEEeCcEEEEEEEeCCcce-EEee---cCeeecC--CCcEEEEEEEEc-eEEEEEECCEEeEEEec
Q psy9685 139 AEMEAGELFVRLQFNSTPE-SYNV---GGVKLAD--GNNHLIQVVRNV-TLVQVKLNGTEYFRKTI 197 (979)
Q Consensus 139 l~L~~G~l~~~~~~g~~~~-~~~~---~~~~lnD--g~WH~V~v~r~~-~~~~L~VD~~~~~~~~~ 197 (979)
+.|+++.+++.+.--.|.. .+.. -...++| ++||.|+++-+. +...+.|+|.-......
T Consensus 92 I~l~~n~iiwtl~D~ng~~k~i~f~y~~~~~~SdyiNkW~fITITnnrL~~~~IyINg~Li~~~~I 157 (195)
T PF07953_consen 92 ISLNNNGIIWTLIDSNGNEKSIYFNYSIMDNISDYINKWFFITITNNRLGNSKIYINGNLIDNESI 157 (195)
T ss_dssp EEEETTEEEEEEEETTSEEEEEEEESSSTSSTTSSTTSEEEEEEEEETTSEEEEEETTEEEEEEE-
T ss_pred EEEeCCcEEEEEEeCCCCEEEEEEEcccccchhhhcccEEEEEEEcccCccceEEECCEEEcccch
Confidence 8889999999887666622 2222 1112222 899999999988 66699999987655543
No 112
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=65.55 E-value=5.7 Score=30.26 Aligned_cols=20 Identities=35% Similarity=0.919 Sum_probs=15.4
Q ss_pred eccCCCCeeecCCCCCCCCCCC
Q psy9685 841 CINQPGDYKCACQFDTCGYLCN 862 (979)
Q Consensus 841 C~~~~gs~~C~C~~g~~G~~C~ 862 (979)
|....| +|.|+++|.|..|+
T Consensus 14 C~~~~G--~C~C~~~~~G~~C~ 33 (50)
T cd00055 14 CDPGTG--QCECKPNTTGRRCD 33 (50)
T ss_pred ccCCCC--EEeCCCcCCCCCCC
Confidence 554444 88999999999885
No 113
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=65.39 E-value=6.4 Score=39.43 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=48.3
Q ss_pred ccceeEEEEEEEe-c-cCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCce-------eeecC
Q psy9685 290 VRNIVDISMFIRT-R-QLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPES-------YNVGG 360 (979)
Q Consensus 290 ~~~~~~is~~frT-~-~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~-------~~~~~ 360 (979)
.-.++.|+++||. . ...||+|...... ...+......+.|.++.-........|... .....
T Consensus 51 ~~~df~l~~d~k~~~~~~sGi~~r~~~~~---------~~~~~~~gy~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 121 (185)
T PF06439_consen 51 KFSDFELEVDFKITPGGNSGIFFRAQSPG---------DGQDWNNGYEFQIDNSGGGTGLPNSTGSLYDEPPWQLEPSVN 121 (185)
T ss_dssp EBSSEEEEEEEEE-TT-EEEEEEEESSEC---------CSSGGGTSEEEEEE-TTTCSTTTTSTTSBTTTB-TCB-SSS-
T ss_pred ccccEEEEEEEEECCCCCeEEEEEecccc---------CCCCcceEEEEEEECCCCccCCCCccceEEEecccccccccc
Confidence 3457888888884 3 3446776664110 122244556666655442211111122221 12345
Q ss_pred eeecCCCeeEEEEEeecceeeeEEEEEccCCCc
Q psy9685 361 VKLADGNNHLIQTISSTGILDVQVLYLGGIPET 393 (979)
Q Consensus 361 ~~l~DG~wH~V~~~~~~~~l~l~vlyvGG~p~~ 393 (979)
..+..|+||++.|...+++|. +||.|.+-.
T Consensus 122 ~~~~~~~W~~~~I~~~g~~i~---v~vnG~~v~ 151 (185)
T PF06439_consen 122 VAIPPGEWNTVRIVVKGNRIT---VWVNGKPVA 151 (185)
T ss_dssp -S--TTSEEEEEEEEETTEEE---EEETTEEEE
T ss_pred ccCCCCceEEEEEEEECCEEE---EEECCEEEE
Confidence 678899999999999999865 577776533
No 114
>KOG3607|consensus
Probab=64.28 E-value=17 Score=44.33 Aligned_cols=29 Identities=24% Similarity=0.628 Sum_probs=24.5
Q ss_pred CCCCCCCeeeccCCCCeeecCCCCCCCCCCCC
Q psy9685 832 SDMCGNNGECINQPGDYKCACQFDTCGYLCNF 863 (979)
Q Consensus 832 ~~~C~~~g~C~~~~gs~~C~C~~g~~G~~C~~ 863 (979)
+..|+.+|+|.+.- .|.|.+||.+..|+.
T Consensus 629 ~~~C~g~GVCnn~~---~ChC~~gwapp~C~~ 657 (716)
T KOG3607|consen 629 PTTCNGHGVCNNEL---NCHCEPGWAPPFCFI 657 (716)
T ss_pred ccccCCCcccCCCc---ceeeCCCCCCCcccc
Confidence 34599999998764 899999999999974
No 115
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=64.14 E-value=7 Score=29.76 Aligned_cols=18 Identities=33% Similarity=0.927 Sum_probs=15.9
Q ss_pred CCeEeecCCCCCCCCCCc
Q psy9685 886 ADYKCDCLPGWTGKNCTE 903 (979)
Q Consensus 886 ~~~~C~C~~G~~G~~C~~ 903 (979)
.+++|.|.++++|..|+.
T Consensus 17 ~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 17 GTGQCECKPNTTGRRCDR 34 (50)
T ss_pred CCCEEeCCCcCCCCCCCC
Confidence 467999999999999985
No 116
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=64.12 E-value=3.9 Score=30.95 Aligned_cols=21 Identities=33% Similarity=0.841 Sum_probs=16.4
Q ss_pred eeccCCCCeeecCCCCCCCCCCC
Q psy9685 840 ECINQPGDYKCACQFDTCGYLCN 862 (979)
Q Consensus 840 ~C~~~~gs~~C~C~~g~~G~~C~ 862 (979)
+|....| +|.|+++|.|..|+
T Consensus 12 ~C~~~~G--~C~C~~~~~G~~C~ 32 (49)
T PF00053_consen 12 TCDPSTG--QCVCKPGTTGPRCD 32 (49)
T ss_dssp SEEETCE--EESBSTTEESTTS-
T ss_pred cccCCCC--EEeccccccCCcCc
Confidence 6665444 99999999999996
No 117
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=63.08 E-value=7.6 Score=28.98 Aligned_cols=14 Identities=36% Similarity=1.134 Sum_probs=12.6
Q ss_pred EEecCCCcccCccc
Q psy9685 662 VCNCSEEYVGERCE 675 (979)
Q Consensus 662 ~C~C~~G~~G~~C~ 675 (979)
.|.|.++++|.+|+
T Consensus 19 ~C~C~~~~~G~~C~ 32 (46)
T smart00180 19 QCECKPNVTGRRCD 32 (46)
T ss_pred EEECCCCCCCCCCC
Confidence 89999999998887
No 118
>PF15102 TMEM154: TMEM154 protein family
Probab=62.76 E-value=3.1 Score=39.12 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=23.3
Q ss_pred chhhhhh-hHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9685 916 ALLIIGP-ILAILLLGGLISMAVLCLMARQKRGR 948 (979)
Q Consensus 916 ~~~~~~~-~~~~lll~~l~~~~~~~~~~r~~r~~ 948 (979)
..++++| +++++||+++++++.+..++|.|+..
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ 91 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQEP 91 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCCCC
Confidence 3345555 67777788888888888888887753
No 119
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=59.39 E-value=49 Score=39.65 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=54.1
Q ss_pred eeEEEEEEEEeCCC-CeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCcceEEeecCeeecCCCcEE
Q psy9685 95 NIVDISMFIRTRQL-RGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHL 173 (979)
Q Consensus 95 ~~~~isl~FrT~~~-~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~~~~~~~~~~~lnDg~WH~ 173 (979)
.+..|+..|....+ .|=+|.++.-+.++...+ ...+=||.| ..+|.-.+.=++.+. .++......+.-++||+
T Consensus 542 ~NytVs~DV~ie~~~~ggv~lagRv~~~g~~~~----~~~G~~f~v-~~~G~w~vt~d~~~~-~~l~~G~~~~~~~~Wht 615 (669)
T PF02057_consen 542 SNYTVSCDVYIETPDTGGVFLAGRVNKGGCDVR----SARGYFFWV-YANGTWSVTSDLAGT-TTLASGTADIGAGKWHT 615 (669)
T ss_dssp -EEEEEEEEEE-STTT-EEEEEEEE---GGGGG----G-EEEEEEE-ETTTEEEEEEETTS--SEEEEEE-S--TT-EEE
T ss_pred eEEEEEEEEEeccCCcCcEEEEEeecccccccC----CCCeEEEEE-EcCCcEEEeccCCCc-EEEeeeeecccCCeEEE
Confidence 34567777776643 344455441111110110 112335555 689988887777654 45555445688999999
Q ss_pred EEEEEEceEEEEEECCEEeEEE
Q psy9685 174 IQVVRNVTLVQVKLNGTEYFRK 195 (979)
Q Consensus 174 V~v~r~~~~~~L~VD~~~~~~~ 195 (979)
|.+..++..+.-.+|+..+...
T Consensus 616 ltL~~~g~~~ta~lng~~l~~~ 637 (669)
T PF02057_consen 616 LTLTISGSTATAMLNGTVLWTD 637 (669)
T ss_dssp EEEEEETTEEEEEETTEEEEEE
T ss_pred EEEEEECCEEEEEECCEEeEEe
Confidence 9999999999999999877544
No 120
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=58.49 E-value=16 Score=27.90 Aligned_cols=23 Identities=17% Similarity=0.619 Sum_probs=16.7
Q ss_pred CCCCCceEecCCCCeEEecCCCCcCCC
Q psy9685 730 PCKNSGQCIDDVNAFICNCTNTATGAS 756 (979)
Q Consensus 730 ~C~~~g~C~~~~g~~~C~C~~g~~g~~ 756 (979)
.|..+..|++. +|.|++||.-.+
T Consensus 27 qC~~~s~C~~g----~C~C~~g~~~~~ 49 (52)
T PF01683_consen 27 QCIGGSVCVNG----RCQCPPGYVEVG 49 (52)
T ss_pred CCCCcCEEcCC----EeECCCCCEecC
Confidence 35567888654 899999986544
No 121
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=57.83 E-value=3.2 Score=33.37 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=20.6
Q ss_pred ccccCCCCcCCCCccccCcccccCCCCCCCCeeeccCCCCeeecCCCCCCCCCC
Q psy9685 808 VQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC 861 (979)
Q Consensus 808 ~~C~C~~g~~G~~C~~~~~~C~~~~~~C~~~g~C~~~~gs~~C~C~~g~~G~~C 861 (979)
.+..|...|.|..|.+ .|.... .-..+-+|.. .| .=.|.+||.|..|
T Consensus 17 ~rv~C~~nyyG~~C~~---~C~~~~-d~~ghy~Cd~-~G--~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 17 IRVVCDENYYGPNCSK---FCKPRD-DSFGHYTCDS-NG--NKVCLPGWTGPNC 63 (63)
T ss_dssp ------TTEETTTT-E---E---EE-ETTEEEEE-S-S----EEE-TTEESTTS
T ss_pred EEEECCCCCCCccccC---CcCCCc-CCcCCcccCC-CC--CCCCCCCCcCCCC
Confidence 4567888999999974 343211 1123346663 34 4467888888876
No 122
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=57.61 E-value=19 Score=35.10 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=6.3
Q ss_pred CceeecccCCC
Q psy9685 962 PRVEMNNVLKP 972 (979)
Q Consensus 962 ~~~~~~~~~~~ 972 (979)
.++||..+..+
T Consensus 137 ~~~Em~pL~~d 147 (163)
T PF06679_consen 137 ENVEMAPLEED 147 (163)
T ss_pred ccceecccCCC
Confidence 35777666333
No 123
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=57.36 E-value=2.9 Score=29.93 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.2
Q ss_pred hhhhHH
Q psy9685 920 IGPILA 925 (979)
Q Consensus 920 ~~~~~~ 925 (979)
++|+++
T Consensus 18 vVPV~v 23 (40)
T PF08693_consen 18 VVPVGV 23 (40)
T ss_pred EechHH
Confidence 333333
No 124
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=57.30 E-value=20 Score=31.41 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=23.4
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccc
Q psy9685 913 VDLALLIIGPILAILLLGGLISMAVLCLMARQKRGR 948 (979)
Q Consensus 913 ~~~~~~~~~~~~~~lll~~l~~~~~~~~~~r~~r~~ 948 (979)
...|..+++.+++++++.+||++++++-..++.+..
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~S 49 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLAS 49 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 344555777777777777777777776665555443
No 125
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=57.08 E-value=2.8 Score=33.72 Aligned_cols=47 Identities=34% Similarity=0.699 Sum_probs=20.9
Q ss_pred CeeecCCCCCCCCCCCCCCCCCCC-CCCCCCeeecCCCCCCCeEeecCCCCCCCCC
Q psy9685 847 DYKCACQFDTCGYLCNFPDPCKDE-PCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901 (979)
Q Consensus 847 s~~C~C~~g~~G~~C~~~~~C~~~-~C~~~g~C~~~c~~~~~~~C~C~~G~~G~~C 901 (979)
.+.-.|...|.|..|.. .|.+. .-..+-+|. ..+.=.|.+||+|..|
T Consensus 16 ~~rv~C~~nyyG~~C~~--~C~~~~d~~ghy~Cd------~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 16 RIRVVCDENYYGPNCSK--FCKPRDDSFGHYTCD------SNGNKVCLPGWTGPNC 63 (63)
T ss_dssp -------TTEETTTT-E--E---EEETTEEEEE-------SS--EEE-TTEESTTS
T ss_pred EEEEECCCCCCCccccC--CcCCCcCCcCCcccC------CCCCCCCCCCCcCCCC
Confidence 34568899999999963 33321 001223454 1345679999999987
No 126
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=54.17 E-value=78 Score=33.21 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCEEEEEEeCcE---------EEEEEEeCCcceEEe-------ecCeeecCCCcEEEEEEEEc--eEEEEEECCE
Q psy9685 134 TSYIAAEMEAGE---------LFVRLQFNSTPESYN-------VGGVKLADGNNHLIQVVRNV--TLVQVKLNGT 190 (979)
Q Consensus 134 ~dfi~l~L~~G~---------l~~~~~~g~~~~~~~-------~~~~~lnDg~WH~V~v~r~~--~~~~L~VD~~ 190 (979)
...+|||..-=+ -++.++.++-..... .....+.||+||+|.|..+. +.+.+.++..
T Consensus 116 ~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~ 190 (236)
T PF00139_consen 116 NNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDN 190 (236)
T ss_dssp GCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEET
T ss_pred CcEEEEEEeeeecccccccCCCEEEEECCCCcccccccccccccccccccCCcEEEEEEEEcCCccEEEEEEecc
Confidence 458898884322 255566654321111 13457899999999999999 5666666654
No 127
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=52.36 E-value=19 Score=37.77 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhhhccc
Q psy9685 933 ISMAVLCLMARQKRGR 948 (979)
Q Consensus 933 ~~~~~~~~~~r~~r~~ 948 (979)
+++.+.++.++.+|++
T Consensus 245 l~~gw~~y~~~~krre 260 (262)
T PF11884_consen 245 LVLGWSLYRWNQKRRE 260 (262)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344555555555554
No 128
>KOG3546|consensus
Probab=51.31 E-value=56 Score=37.99 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=70.3
Q ss_pred cccccccccCCCeeEEEEeCccccccceeeEEEEEEEEeCCCC-eEEEEecCCCCCCCCCCCCCCCCCCCEEEEEE---e
Q psy9685 67 TAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLR-GAIFYLGGSGDRSSPSSNGAGSEETSYIAAEM---E 142 (979)
Q Consensus 67 ~a~~Fg~~~~~~s~~~~~~~~~~~~~~~~~~~isl~FrT~~~~-GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L---~ 142 (979)
.|+.||-+ .|+-..-... .+..+-..|.|.|.+|..... |+||-..+ ..+..-|+-|.| +
T Consensus 63 ~ay~fgp~--an~g~~ar~~--~ps~ffrdf~~~~~i~p~s~~~gvlfaitd------------~~q~~i~lg~~lsgv~ 126 (1167)
T KOG3546|consen 63 LAYVFGPD--ANSGQVARYH--FPSLFFRDFSLLFHIRPATEGPGVLFAITD------------SAQAMVLLGVKLSGVQ 126 (1167)
T ss_pred eeeeecCC--CCCCcchhhh--CchhhhccceEEEEeeccCCCCceEEEech------------hhhhhheeeeeeeccc
Confidence 47788874 3332111110 111223667788888877655 55555432 111223555555 4
Q ss_pred CcEEE--EEEE-eCCcceEEe--ecCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEec-Cccccccc--c-eeEEcCC
Q psy9685 143 AGELF--VRLQ-FNSTPESYN--VGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTI-SSTGILDV--Q-VLYLGGI 213 (979)
Q Consensus 143 ~G~l~--~~~~-~g~~~~~~~--~~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~-~~~~~l~~--~-~lyvGG~ 213 (979)
||+-. +.|. -|++ +... +-..++--++|.++.++..+..+.|.||-++..+... -+.+.|.+ . .||+|-.
T Consensus 127 dghq~i~l~ytepg~~-~s~~aa~f~~p~~~~~w~~~a~~v~g~~v~l~v~cee~~r~p~~rss~~l~~e~~ag~f~~~a 205 (1167)
T KOG3546|consen 127 DGHQDISLLYTEPGAG-QTHTAASFRLPAFVGQWTHLALSVAGGFVALYVDCEEFQRMPLARSSRGLELEPGAGLFVAQA 205 (1167)
T ss_pred cCcceeEEEeccCCCC-ccchhheeccchhhchhhheeeeecCceEEEEechHHhcccchhccccceeecCCcceEEecc
Confidence 66543 3333 2332 2212 2235677899999999999999999999765443321 22222322 2 7888754
No 129
>KOG3653|consensus
Probab=51.02 E-value=71 Score=36.50 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=12.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9685 919 IIGPILAILLLGGLISMAVLCLMARQKRG 947 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~~r~~r~ 947 (979)
++++.+++.++++|++.+++.++.++..+
T Consensus 157 al~~~~~v~~l~~lvi~~~~~~r~~k~~~ 185 (534)
T KOG3653|consen 157 ALIPLLLVSLLAALVILAFLGYRQRKNAR 185 (534)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33444444444444444444444444333
No 130
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=49.92 E-value=20 Score=29.97 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9685 919 IIGPILAILLLGGLISMAVLCLMARQKRG 947 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~~r~~r~ 947 (979)
+++++++-+++-++|++++++..+.|+|+
T Consensus 36 LaGiV~~D~vlTLLIv~~vy~car~r~r~ 64 (79)
T PF07213_consen 36 LAGIVAADAVLTLLIVLVVYYCARPRRRP 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 55666666666555555555555444433
No 131
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=49.39 E-value=13 Score=40.72 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy9685 924 LAILLLGGLISMAVLCLMARQK 945 (979)
Q Consensus 924 ~~~lll~~l~~~~~~~~~~r~~ 945 (979)
++++|++|++++++.+++.|||
T Consensus 277 VG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 277 VGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHhheeEecc
Confidence 4444443444333334433333
No 132
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=48.81 E-value=24 Score=26.94 Aligned_cols=20 Identities=50% Similarity=1.276 Sum_probs=14.3
Q ss_pred CCCCCceecCCCCCCCCCCCCeecCCCCCC
Q psy9685 686 PCYFGAVCQDTKISPYFPQGPICDCPPGYR 715 (979)
Q Consensus 686 ~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~ 715 (979)
.|..+..|.+. +|.|++||.
T Consensus 27 qC~~~s~C~~g----------~C~C~~g~~ 46 (52)
T PF01683_consen 27 QCIGGSVCVNG----------RCQCPPGYV 46 (52)
T ss_pred CCCCcCEEcCC----------EeECCCCCE
Confidence 35566677543 899999986
No 133
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=48.38 E-value=35 Score=24.17 Aligned_cols=28 Identities=7% Similarity=0.234 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy9685 919 IIGPILAILLLGGLISMAVLCLMARQKR 946 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~~r~~r 946 (979)
+++.+++++++++.+.....++++.++.
T Consensus 9 Iv~V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 9 IVAVVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 4444444444444445555666666643
No 134
>KOG1834|consensus
Probab=48.34 E-value=1.2e+02 Score=35.70 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=55.4
Q ss_pred cccceeEEEEEEEecc-------CCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEEEcCCcCceeee---
Q psy9685 289 AVRNIVDISMFIRTRQ-------LRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNV--- 358 (979)
Q Consensus 289 ~~~~~~~is~~frT~~-------~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~~~g~~~~~~~~--- 358 (979)
.....|+|+|++|--. ..-.||-...+ ........+|++.+=+|.|.+....+......
T Consensus 363 ~l~dhFTlSfwMkHg~~p~~~~~eketIlCnsdk-----------~emnrhHyslyvh~Crl~fllr~d~~~~~~fRpae 431 (952)
T KOG1834|consen 363 SLPDHFTLSFWMKHGPGPKDEQSEKETILCNSDK-----------TEMNRHHYSLYVHGCRLEFLLRRDAGATSDFRPAE 431 (952)
T ss_pred CCCCceEEEEeeecCCCCccccccceeEEecccc-----------cccccceeEEEEeccEEEEEEccCccccccccchh
Confidence 4567889999988432 12245544332 12255789999999999998876544432222
Q ss_pred ---cCeeecCCCeeEEEEEeecceeeeEEEEEcc
Q psy9685 359 ---GGVKLADGNNHLIQTISSTGILDVQVLYLGG 389 (979)
Q Consensus 359 ---~~~~l~DG~wH~V~~~~~~~~l~l~vlyvGG 389 (979)
.-..++|.+||.-.+....-.++ ||+.|
T Consensus 432 f~Wkl~qVCD~EWH~Y~ln~efp~Vt---lyvDG 462 (952)
T KOG1834|consen 432 FHWKLPQVCDNEWHHYVLNVEFPDVT---LYVDG 462 (952)
T ss_pred eeccchhhhhhhhheeEEeecCceEE---EEEcC
Confidence 13468999999998776655432 44444
No 135
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=47.05 E-value=2e+02 Score=25.90 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.7
Q ss_pred EEEEeC-CCCeEEEEecCCCCCCCCCCCCCCCCCCCEEEEEEeCcEEEEEEEeCCc
Q psy9685 101 MFIRTR-QLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNST 155 (979)
Q Consensus 101 l~FrT~-~~~GlLly~~~~~~~~~~~~~~~~~~~~dfi~l~L~~G~l~~~~~~g~~ 155 (979)
+.+||. ..+-+++|.|+ +.+.+..|.-+|.+..|+-+..|++.+.
T Consensus 19 i~w~~~~~~~~~iiFsGG----------mp~~~ygdr~~vTV~~g~~~~~ldf~s~ 64 (105)
T PF08366_consen 19 ILWRTSRNGEPFIIFSGG----------MPRASYGDRHCVTVMQGKTHVVLDFTSR 64 (105)
T ss_pred EEEEecCCCCcEEEEeCC----------ccccccCCCceEEEEeCCEEEEEEcCCc
Confidence 456776 45569999996 4566677888888888999999999886
No 136
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=46.28 E-value=14 Score=37.13 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=11.0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHH
Q psy9685 916 ALLIIGPILAILLLGGLISMAVLC 939 (979)
Q Consensus 916 ~~~~~~~~~~~lll~~l~~~~~~~ 939 (979)
..+++++|++++.++|+|++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHH
Confidence 333445555555444444444444
No 137
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.19 E-value=26 Score=32.35 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhhcccc
Q psy9685 933 ISMAVLCLMARQKRGRR 949 (979)
Q Consensus 933 ~~~~~~~~~~r~~r~~~ 949 (979)
+++++++++..||++++
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34455556666555544
No 138
>PF15050 SCIMP: SCIMP protein
Probab=45.37 E-value=25 Score=31.67 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy9685 927 LLLGGLISMAVLCLMARQ 944 (979)
Q Consensus 927 lll~~l~~~~~~~~~~r~ 944 (979)
+++.+++.++++++.++.
T Consensus 17 I~vS~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 17 ILVSVVLGLILYCVCRWQ 34 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 139
>KOG3637|consensus
Probab=44.28 E-value=18 Score=46.34 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=25.1
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9685 913 VDLALLIIGPILAILLLGGLISMAVLCLMARQKRG 947 (979)
Q Consensus 913 ~~~~~~~~~~~~~~lll~~l~~~~~~~~~~r~~r~ 947 (979)
.++|++++.+++++|||++|++++|++=..+|.|+
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 56677777777888888777788888755555544
No 140
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=44.04 E-value=46 Score=33.64 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=24.5
Q ss_pred eecCCCcEEEEEEEEceEEEEEECCEEeEEEe
Q psy9685 165 KLADGNNHLIQVVRNVTLVQVKLNGTEYFRKT 196 (979)
Q Consensus 165 ~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~ 196 (979)
..+...||+++|.+.++.+++.||+..+..-.
T Consensus 155 ~~d~~~~Yr~~i~K~~~~v~f~In~L~vf~w~ 186 (218)
T PF09224_consen 155 VEDARGPYRMEIVKDGRTVRFSINGLPVFSWT 186 (218)
T ss_dssp GGG--S-EEEEEEEETTEEEEEETTEEEEEEE
T ss_pred ccccCCCEEEEEEEcCCEEEEEECCEEEEEEE
Confidence 45566899999999999999999998775543
No 141
>KOG3546|consensus
Probab=42.04 E-value=85 Score=36.62 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=46.3
Q ss_pred ccceeEEEEEEEeccC-CeEEEEecCCCCCCCCCCCCCCCCccceEEEEE---ecCEEEEEEE---cCCcCceee-ecCe
Q psy9685 290 VRNIVDISMFIRTRQL-RGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEM---EAGELFVRLQ---FNSTPESYN-VGGV 361 (979)
Q Consensus 290 ~~~~~~is~~frT~~~-~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l---~~G~l~~~~~---~g~~~~~~~-~~~~ 361 (979)
.-.+|.|.|.+|+... -|+||.+-..-+ .--|+-|.| +||+-.+.+- .|++..... .-..
T Consensus 85 ffrdf~~~~~i~p~s~~~gvlfaitd~~q------------~~i~lg~~lsgv~dghq~i~l~ytepg~~~s~~aa~f~~ 152 (1167)
T KOG3546|consen 85 FFRDFSLLFHIRPATEGPGVLFAITDSAQ------------AMVLLGVKLSGVQDGHQDISLLYTEPGAGQTHTAASFRL 152 (1167)
T ss_pred hhccceEEEEeeccCCCCceEEEechhhh------------hhheeeeeeeccccCcceeEEEeccCCCCccchhheecc
Confidence 3457888899998654 578887744311 234666655 5776333332 222221111 1234
Q ss_pred eecCCCeeEEEEEeecceeee
Q psy9685 362 KLADGNNHLIQTISSTGILDV 382 (979)
Q Consensus 362 ~l~DG~wH~V~~~~~~~~l~l 382 (979)
.+--++|.++.++.....+.|
T Consensus 153 p~~~~~w~~~a~~v~g~~v~l 173 (1167)
T KOG3546|consen 153 PAFVGQWTHLALSVAGGFVAL 173 (1167)
T ss_pred chhhchhhheeeeecCceEEE
Confidence 556789999988877776544
No 142
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=41.12 E-value=25 Score=37.10 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=30.9
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Q psy9685 915 LALLIIGPILAILLLGGLISMAVLCLMARQKRGRRGTYSPS 955 (979)
Q Consensus 915 ~~~~~~~~~~~~lll~~l~~~~~~~~~~r~~r~~~~~~~~~ 955 (979)
.+..+..|-+..+|+++++.++++++..|-.||++..++..
T Consensus 253 aA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 253 AATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 34445677777788888888888888889998888876543
No 143
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.05 E-value=35 Score=36.81 Aligned_cols=8 Identities=0% Similarity=0.534 Sum_probs=3.5
Q ss_pred eeecccCC
Q psy9685 964 VEMNNVLK 971 (979)
Q Consensus 964 ~~~~~~~~ 971 (979)
++..++++
T Consensus 270 ~d~~~~~~ 277 (281)
T PF12768_consen 270 IDEDEMMQ 277 (281)
T ss_pred cCcccccc
Confidence 33444444
No 144
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=39.65 E-value=34 Score=40.30 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=9.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Q psy9685 919 IIGPILAILLLGGLISMAVLCLM 941 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~ 941 (979)
++++++-++|+++|++++.+++.
T Consensus 272 I~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 272 IAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred EehHhHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444333
No 145
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=39.55 E-value=37 Score=34.29 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhhcc
Q psy9685 932 LISMAVLCLMARQKRG 947 (979)
Q Consensus 932 l~~~~~~~~~~r~~r~ 947 (979)
++++..++++.||..+
T Consensus 116 ~~~~~~Y~~~~Rrs~~ 131 (202)
T PF06365_consen 116 ILLGAGYCCHQRRSWS 131 (202)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3333333333444433
No 146
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=37.25 E-value=10 Score=28.99 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=18.0
Q ss_pred CCCCCCceecCCCCCCCCCCCCeecCCCCCCCCCccccCCCC
Q psy9685 685 QPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDEC 726 (979)
Q Consensus 685 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~G~~G~~C~~~~~~C 726 (979)
.+|..+|..--.+.. ..+...|.|..-|.|..|+..+..|
T Consensus 17 i~CSGHGr~flDg~~--~dG~p~CECn~Cy~GpdCS~~~~~C 56 (56)
T PF04863_consen 17 ISCSGHGRAFLDGLI--ADGSPVCECNSCYGGPDCSTLIPNC 56 (56)
T ss_dssp S--TTSEE--TTS-E--ETTEE--EE-TTEESTTS-EE-TT-
T ss_pred CCcCCCCeeeecccc--ccCCccccccCCcCCCCcccCCCCC
Confidence 346666665421110 1345689999999999998655444
No 147
>PTZ00370 STEVOR; Provisional
Probab=37.12 E-value=19 Score=38.01 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Q psy9685 915 LALLIIGPILAILLLGGLISMAVLCLMARQKRGRRGTYSPS 955 (979)
Q Consensus 915 ~~~~~~~~~~~~lll~~l~~~~~~~~~~r~~r~~~~~~~~~ 955 (979)
.+..+..|-+..+|+++++.++++++..|-.||++..++..
T Consensus 249 aAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 249 AASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 33445666777777777777888888888888888776544
No 148
>PTZ00334 trans-sialidase; Provisional
Probab=36.79 E-value=1.1e+02 Score=37.61 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=36.1
Q ss_pred eecCCCcEEEEEEE-EceEEEEEECCEEeEEEe--cCcccccccceeEEcCCC
Q psy9685 165 KLADGNNHLIQVVR-NVTLVQVKLNGTEYFRKT--ISSTGILDVQVLYLGGIP 214 (979)
Q Consensus 165 ~lnDg~WH~V~v~r-~~~~~~L~VD~~~~~~~~--~~~~~~l~~~~lyvGG~p 214 (979)
...-++=|+|.|.. +++++.++|||+.+.... ......+.+.++||||--
T Consensus 639 tWe~~k~yqVal~L~~G~~gsvYVDG~~vg~~~~~l~~~~~~~IshFyiGgdg 691 (780)
T PTZ00334 639 NWEPETTHQVAIVLRNGKQGSAYVDGQRVGDASCELKNTDSKGISHFYIGGDG 691 (780)
T ss_pred cccCCCeEEEEEEEeCCCeEEEEECCEEecCcccccCCCCCcccceEEECCCc
Confidence 45566779999886 678999999998763322 233455566799999954
No 149
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=35.34 E-value=24 Score=35.27 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=3.3
Q ss_pred hhhhhHHHH
Q psy9685 919 IIGPILAIL 927 (979)
Q Consensus 919 ~~~~~~~~l 927 (979)
++++|++++
T Consensus 81 ivgvi~~Vi 89 (179)
T PF13908_consen 81 IVGVICGVI 89 (179)
T ss_pred eeehhhHHH
Confidence 333333333
No 150
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=35.19 E-value=33 Score=37.18 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccccC
Q psy9685 923 ILAILLLGGLISMAVLCLMARQKRGRRG 950 (979)
Q Consensus 923 ~~~~lll~~l~~~~~~~~~~r~~r~~~~ 950 (979)
++.++++++|+++.++++...|.||+++
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444445555444443
No 151
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=35.18 E-value=2.2e+02 Score=28.26 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCCEE-EEEEe-CcEEEEEEEeCCcceEEeecCeeecCCCcEEEEEEEEc--eEEEEEECCEEeE
Q psy9685 133 ETSYI-AAEME-AGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRNV--TLVQVKLNGTEYF 193 (979)
Q Consensus 133 ~~dfi-~l~L~-~G~l~~~~~~g~~~~~~~~~~~~lnDg~WH~V~v~r~~--~~~~L~VD~~~~~ 193 (979)
...|+ .|.|. +|.|++.++-++++.++.... .+-...|+.+|.... ...+|.|||..+.
T Consensus 56 ~~r~l~~lsvn~sG~LvA~L~g~ss~~~~~~~~--~di~gyH~Y~i~~~p~~~tASfy~DG~lI~ 118 (198)
T PF09264_consen 56 SKRYLPILSVNESGSLVAELEGQSSNTLLATTG--ADIHGYHKYEIVFSPLTNTASFYFDGTLIA 118 (198)
T ss_dssp SEEEEEEEEE-TTS-EEEEETTS-S-EEEE-CH--HHHCSEEEEEEEEETTTTEEEEEETTEEEE
T ss_pred ceEEEEEEEEcCCCCEEEEEecCCCcEEEeccc--ccccceeEEEEEecCCCCceEEEECCEEEe
Confidence 45676 45664 789999998887765554321 122468999999976 8999999998764
No 152
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=34.85 E-value=12 Score=29.86 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=0.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy9685 916 ALLIIGPILAILLLGGLISMAVLCLMARQKR 946 (979)
Q Consensus 916 ~~~~~~~~~~~lll~~l~~~~~~~~~~r~~r 946 (979)
+.++++.+++++++++++ +++++.+++|+.
T Consensus 12 aavIaG~Vvgll~ailLI-lf~iyR~rkkdE 41 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLI-LFLIYRMRKKDE 41 (64)
T ss_dssp --------------------------S----
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 344555555555554444 444455555553
No 153
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=33.82 E-value=23 Score=31.66 Aligned_cols=6 Identities=17% Similarity=0.617 Sum_probs=2.1
Q ss_pred hhHHHH
Q psy9685 922 PILAIL 927 (979)
Q Consensus 922 ~~~~~l 927 (979)
++++++
T Consensus 67 ~lls~v 72 (101)
T PF06024_consen 67 SLLSFV 72 (101)
T ss_pred HHHHHH
Confidence 333333
No 154
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=33.29 E-value=14 Score=42.49 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCccc
Q psy9685 233 YPSGGHCT 240 (979)
Q Consensus 233 c~~~G~C~ 240 (979)
|...+.|.
T Consensus 28 C~~~~~C~ 35 (439)
T PF02480_consen 28 CLDRNYCF 35 (439)
T ss_dssp --------
T ss_pred cccccccc
Confidence 44444443
No 155
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=32.78 E-value=41 Score=30.50 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=18.4
Q ss_pred CCCC-CCCCCCCceEecCCCCeEEecCCCCc
Q psy9685 724 DECA-SGPCKNSGQCIDDVNAFICNCTNTAT 753 (979)
Q Consensus 724 ~~C~-~~~C~~~g~C~~~~g~~~C~C~~g~~ 753 (979)
+.|. -+.|+..|.|.. .....|.|.+||.
T Consensus 78 d~Cd~y~~CG~~g~C~~-~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNS-NNSPKCSCLPGFE 107 (110)
T ss_pred cCCCCccccCCccEeCC-CCCCceECCCCcC
Confidence 3444 245888888853 3344688888875
No 156
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=32.25 E-value=4.3e+02 Score=28.28 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=36.3
Q ss_pred eeecCCCcEEEEEEEE-------ceEEEEEECCEEeEEEecCcccccccceeEEcCCCCcc
Q psy9685 164 VKLADGNNHLIQVVRN-------VTLVQVKLNGTEYFRKTISSTGILDVQVLYLGGIPETV 217 (979)
Q Consensus 164 ~~lnDg~WH~V~v~r~-------~~~~~L~VD~~~~~~~~~~~~~~l~~~~lyvGG~p~~~ 217 (979)
+--..|+.|.|.|.-. .-.+.+.||+..+.....-.=..-..+.++|+|+|-..
T Consensus 150 ~F~e~G~~HeI~Iec~~~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~~V~V 210 (274)
T PF05910_consen 150 RFCEGGKEHEISIECGGETGGPKDPELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGLPVQV 210 (274)
T ss_pred EEcCCCcEEEEEEEEeccCCCCCCceEEEEECCEEEEEEEEeeecccCceEEEECCeEEEE
Confidence 3456899999999992 13789999998776554322111123478999998763
No 157
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=31.40 E-value=1.1e+02 Score=26.07 Aligned_cols=48 Identities=10% Similarity=-0.006 Sum_probs=32.7
Q ss_pred CCCEEEEEEeCcEEEEEEEeCCc----ceEEee--cCeeecCCCcEEEEEEEEc
Q psy9685 133 ETSYIAAEMEAGELFVRLQFNST----PESYNV--GGVKLADGNNHLIQVVRNV 180 (979)
Q Consensus 133 ~~dfi~l~L~~G~l~~~~~~g~~----~~~~~~--~~~~lnDg~WH~V~v~r~~ 180 (979)
.+-|-.|.+..|.|.|.+-.+.+ ..++.. ....+.-.+||+|+..-+.
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 45689999999999999877743 222222 3456889999999865443
No 158
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=31.28 E-value=39 Score=30.61 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=14.9
Q ss_pred CCCCCCCeeeccCCCCeeecCCCCCC
Q psy9685 832 SDMCGNNGECINQPGDYKCACQFDTC 857 (979)
Q Consensus 832 ~~~C~~~g~C~~~~gs~~C~C~~g~~ 857 (979)
...|..+|.|.. .....|.|.+||.
T Consensus 83 y~~CG~~g~C~~-~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 83 YGFCGPNGICNS-NNSPKCSCLPGFE 107 (110)
T ss_pred ccccCCccEeCC-CCCCceECCCCcC
Confidence 356777777743 2344677777764
No 159
>KOG0196|consensus
Probab=31.21 E-value=64 Score=39.26 Aligned_cols=61 Identities=25% Similarity=0.562 Sum_probs=33.1
Q ss_pred CceEECCCCcc----CCCCCC----------CCCCCCCCCCCCCCeeccCCCceeeecCCCCCCCccccccccCCCCC
Q psy9685 584 SYACKCPAGYS----SETCAV----------DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNP 647 (979)
Q Consensus 584 ~~~C~C~~G~~----g~~C~~----------~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C~~~~ 647 (979)
...|.|++||. +..|+. ....|. +|..++. ....+...|.|..||.-..-+..-.+|...|
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~--~CP~~S~-s~~ega~~C~C~~gyyRA~~Dp~~mpCT~PP 332 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCL--PCPPNSH-SSSEGATSCTCENGYYRADSDPPSMPCTRPP 332 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCC--CCCCCCC-CCCCCCCcccccCCcccCCCCCCCCCCCCCC
Confidence 46799999995 344542 012232 2333322 1234566788888887655544444555544
No 160
>KOG1653|consensus
Probab=29.38 E-value=50 Score=31.67 Aligned_cols=46 Identities=9% Similarity=0.033 Sum_probs=32.3
Q ss_pred CCEEEEEEeCcEEEEEEEeCCcceEE---eecCeeecCCCcEEEEEEEE
Q psy9685 134 TSYIAAEMEAGELFVRLQFNSTPESY---NVGGVKLADGNNHLIQVVRN 179 (979)
Q Consensus 134 ~dfi~l~L~~G~l~~~~~~g~~~~~~---~~~~~~lnDg~WH~V~v~r~ 179 (979)
.|-+.=.+++|+.+..|+.+.+...- ...+....--+||.|.|.+.
T Consensus 66 qdPl~k~~rngrpVtiFsv~T~~~~k~r~~q~g~~~~~tqWHRVsVf~~ 114 (175)
T KOG1653|consen 66 QDPLQKILRNGRPVTIFSVGTGGMFKQRLYQAGDQPQPTQWHRVSVFNE 114 (175)
T ss_pred cchHHHhhcCCCeEEEEEeecCccccccccccCCcCCcceeEEEEeeCc
Confidence 35555577899999999998773322 12344556678999999984
No 161
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=29.21 E-value=31 Score=29.72 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy9685 924 LAILLLGGL 932 (979)
Q Consensus 924 ~~~lll~~l 932 (979)
++++|++++
T Consensus 49 GG~iLilIi 57 (98)
T PF07204_consen 49 GGLILILII 57 (98)
T ss_pred chhhhHHHH
Confidence 333333333
No 162
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=27.52 E-value=35 Score=36.23 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=10.0
Q ss_pred cchhhhhhhHHHHHHHHHHHH
Q psy9685 915 LALLIIGPILAILLLGGLISM 935 (979)
Q Consensus 915 ~~~~~~~~~~~~lll~~l~~~ 935 (979)
.|.++++.++++++|+++.++
T Consensus 212 ~W~iv~g~~~G~~~L~ll~~l 232 (278)
T PF06697_consen 212 WWKIVVGVVGGVVLLGLLSLL 232 (278)
T ss_pred eEEEEEEehHHHHHHHHHHHH
Confidence 333355545555555555433
No 163
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=26.88 E-value=37 Score=31.07 Aligned_cols=16 Identities=44% Similarity=0.465 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHH
Q psy9685 919 IIGPILAILLLGGLIS 934 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~ 934 (979)
+++++++.+-|++++.
T Consensus 82 ~~G~vlLs~GLmlL~~ 97 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLAC 97 (129)
T ss_pred hehHHHHHHHHHHHHh
Confidence 3444444444444443
No 164
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.48 E-value=1.1e+02 Score=28.46 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy9685 920 IGPILAILLLGGLISMAVLCLMARQKR 946 (979)
Q Consensus 920 ~~~~~~~lll~~l~~~~~~~~~~r~~r 946 (979)
+.+.++++++++++++.|+--++|+..
T Consensus 34 ILiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 333344444555666777777666653
No 165
>PF15069 FAM163: FAM163 family
Probab=25.88 E-value=1.6e+02 Score=27.86 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHHHHHHHH
Q psy9685 919 IIGPILAILLLGGLISMA 936 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~ 936 (979)
|.|.|++.++|+.|++++
T Consensus 8 ItGgILAtVILLcIIaVL 25 (143)
T PF15069_consen 8 ITGGILATVILLCIIAVL 25 (143)
T ss_pred EechHHHHHHHHHHHHHH
Confidence 344444444443443333
No 166
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=25.79 E-value=1.1e+02 Score=31.55 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=32.1
Q ss_pred ccceEEEEEecCEEEEEEEcCC----cCceeeecCeeecCCCeeEEEEEee
Q psy9685 330 ETSYIAAEMEAGELFVRLQFNS----TPESYNVGGVKLADGNNHLIQTISS 376 (979)
Q Consensus 330 ~~d~l~l~l~~G~l~~~~~~g~----~~~~~~~~~~~l~DG~wH~V~~~~~ 376 (979)
....++|.+++|++.+.+..+. ...........+.-|+||.|.+...
T Consensus 112 ~~P~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~W~~~~i~~~ 162 (224)
T PF14099_consen 112 GSPPFALRIKGGRLYLRVRGDEPSDSGNKAYSVDLGPVERGKWHDFVIHVK 162 (224)
T ss_dssp EEECEEEEEETTEEEEEEEEE-TCEEEEEEEEEECCCS-TTSEEEEEEEEE
T ss_pred CCCcEEEEEeCCEEEEEEEcCCCCcccceeEeecCCCcCCCcEEEEEEEEE
Confidence 3468899999999999987766 1122234455677799999987654
No 167
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=25.75 E-value=5.3e+02 Score=23.78 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=28.3
Q ss_pred cCeeecCCCcEEEEEEEEceEEEEEECCEEeEE
Q psy9685 162 GGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFR 194 (979)
Q Consensus 162 ~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~ 194 (979)
...++..|+...|.|........+.||+.....
T Consensus 70 ~~~pf~~g~~F~l~i~~~~~~f~i~vng~~~~~ 102 (127)
T cd00070 70 GGFPFQPGQPFELTILVEEDKFQIFVNGQHFFS 102 (127)
T ss_pred CCCCCCCCCeEEEEEEEcCCEEEEEECCEeEEE
Confidence 346888999999999999999999999986533
No 168
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=25.64 E-value=1.1e+02 Score=21.92 Aligned_cols=6 Identities=0% Similarity=0.296 Sum_probs=2.2
Q ss_pred hHHHHH
Q psy9685 923 ILAILL 928 (979)
Q Consensus 923 ~~~~ll 928 (979)
+++++.
T Consensus 16 lVglv~ 21 (43)
T PF08114_consen 16 LVGLVG 21 (43)
T ss_pred HHHHHH
Confidence 333333
No 169
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=25.14 E-value=8.1e+02 Score=25.88 Aligned_cols=22 Identities=5% Similarity=0.101 Sum_probs=13.7
Q ss_pred eeEEEEEEEEeCC------CCeEEEEec
Q psy9685 95 NIVDISMFIRTRQ------LRGAIFYLG 116 (979)
Q Consensus 95 ~~~~isl~FrT~~------~~GlLly~~ 116 (979)
..++++|.||-.. -+||=|+..
T Consensus 57 ~~F~~~f~F~I~~~~~~~~GdGlAfw~t 84 (248)
T cd06901 57 RDWEMHVHFKVHGSGKNLFGDGFAIWYT 84 (248)
T ss_pred CCEEEEEEEEEeCCCCCCCCCEEEEEEE
Confidence 4578888887532 268855544
No 170
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.94 E-value=81 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.312 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhhhcc
Q psy9685 930 GGLISMAVLCLMARQKRG 947 (979)
Q Consensus 930 ~~l~~~~~~~~~~r~~r~ 947 (979)
.++..+.-++++.|++|+
T Consensus 45 ~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 45 GLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred HHHHHHhHhhhhhhHhhh
Confidence 333334444444444443
No 171
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=24.32 E-value=57 Score=29.07 Aligned_cols=34 Identities=24% Similarity=0.633 Sum_probs=25.7
Q ss_pred cCCCCCCCCccccCC-----CCeeeecCC-------------CCCCCCcccc
Q psy9685 229 PSRSYPSGGHCTDLW-----RDFSCSCVR-------------PFLGHTCQYN 262 (979)
Q Consensus 229 ~~~pc~~~G~C~~~~-----~~~~C~C~~-------------~~~g~~C~~~ 262 (979)
..+.|.++|.|+..+ +=|.|.|.+ .|.|+.|++.
T Consensus 11 ~Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKk 62 (103)
T PF12955_consen 11 ATNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKK 62 (103)
T ss_pred hccCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccc
Confidence 457899999999774 348999998 3556667665
No 172
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=23.67 E-value=71 Score=30.67 Aligned_cols=9 Identities=22% Similarity=0.021 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy9685 932 LISMAVLCL 940 (979)
Q Consensus 932 l~~~~~~~~ 940 (979)
+++++++.+
T Consensus 34 ~~~~~~~~~ 42 (146)
T PF14316_consen 34 LILLLWRLW 42 (146)
T ss_pred HHHHHHHHH
Confidence 333333333
No 173
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=23.66 E-value=2.2e+02 Score=25.76 Aligned_cols=34 Identities=32% Similarity=0.235 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Q psy9685 922 PILAILLLGGLISMAVLCLMARQKRGRRGTYSPS 955 (979)
Q Consensus 922 ~~~~~lll~~l~~~~~~~~~~r~~r~~~~~~~~~ 955 (979)
.+.+++.|++++++++-++.+|.++++++.+..+
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k~~~~~ 35 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKKAGQYS 35 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 3556666666667777788888887777776664
No 174
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=23.27 E-value=1.2e+02 Score=22.43 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=21.0
Q ss_pred cCCCeeEEEEEeecceeeeEEEEEc-cCC
Q psy9685 364 ADGNNHLIQTISSTGILDVQVLYLG-GIP 391 (979)
Q Consensus 364 ~DG~wH~V~~~~~~~~l~l~vlyvG-G~p 391 (979)
.||+|++..+......-...|.|++ |--
T Consensus 10 ~d~~wyra~V~~~~~~~~~~V~f~DyG~~ 38 (48)
T cd04508 10 DDGKWYRAKITSILSDGKVEVFFVDYGNT 38 (48)
T ss_pred CCCeEEEEEEEEECCCCcEEEEEEcCCCc
Confidence 4799999998887654456788887 643
No 175
>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM.
Probab=22.66 E-value=1.1e+02 Score=34.02 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.9
Q ss_pred cCeeecCCCcEEEEEEEEceEEEEEECCEEeEEEe
Q psy9685 162 GGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKT 196 (979)
Q Consensus 162 ~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~ 196 (979)
...++++.+|.+|++.|.+.++.|.++++.+....
T Consensus 83 ~~~~l~~~~wN~v~l~~~g~~v~l~LN~~~i~~~~ 117 (399)
T PF07622_consen 83 PTLPLKVNAWNRVRLQRRGDKVQLHLNGQLIYERP 117 (399)
T ss_pred CCCCCCccccceEEEEEeCCEEEEEeCCceeEecc
Confidence 45789999999999999999999999998776654
No 176
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=22.61 E-value=23 Score=31.65 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=1.1
Q ss_pred hhhhHHHHH
Q psy9685 920 IGPILAILL 928 (979)
Q Consensus 920 ~~~~~~~ll 928 (979)
+++.+++++
T Consensus 27 aGIGiL~VI 35 (118)
T PF14991_consen 27 AGIGILIVI 35 (118)
T ss_dssp -SSS-----
T ss_pred ccceeHHHH
Confidence 333333333
No 177
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=22.31 E-value=3e+02 Score=21.89 Aligned_cols=48 Identities=8% Similarity=-0.003 Sum_probs=30.8
Q ss_pred EEEEEEeCcEEEEEEEeCCcceEEee-cCeeecCCCcEEEEEEEEceEEEE
Q psy9685 136 YIAAEMEAGELFVRLQFNSTPESYNV-GGVKLADGNNHLIQVVRNVTLVQV 185 (979)
Q Consensus 136 fi~l~L~~G~l~~~~~~g~~~~~~~~-~~~~lnDg~WH~V~v~r~~~~~~L 185 (979)
+-.+.+.+|.+++. .++....+.. ..-.+..+.||.+.-.-+.....|
T Consensus 20 ~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l 68 (71)
T PF07883_consen 20 DEFFYVLSGEGTLT--VDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFL 68 (71)
T ss_dssp EEEEEEEESEEEEE--ETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEE
T ss_pred CEEEEEEECCEEEE--EccEEeEccCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 36777888988777 4444344433 446788999999965555544333
No 178
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=21.96 E-value=8.2e+02 Score=24.59 Aligned_cols=31 Identities=13% Similarity=0.017 Sum_probs=27.2
Q ss_pred cCCCcEEEEEEEEceEEEEEECCEEeEEEec
Q psy9685 167 ADGNNHLIQVVRNVTLVQVKLNGTEYFRKTI 197 (979)
Q Consensus 167 nDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~ 197 (979)
..+.||+..|......++..|||..+.....
T Consensus 140 ~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~ 170 (210)
T cd00413 140 PADDFHTYRVDWTPGEITFYVDGVLVATITN 170 (210)
T ss_pred CccCeEEEEEEEeCCEEEEEECCEEEEEECC
Confidence 4789999999999999999999998766543
No 179
>PHA03290 envelope glycoprotein I; Provisional
Probab=21.37 E-value=90 Score=33.76 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=19.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhh-ccccCCCCCCC
Q psy9685 917 LLIIGPILAILLLGGLISMAVLCLMARQK-RGRRGTYSPSS 956 (979)
Q Consensus 917 ~~~~~~~~~~lll~~l~~~~~~~~~~r~~-r~~~~~~~~~~ 956 (979)
.+++++++++++|++++++++..=..||+ -++++.|.|.+
T Consensus 273 ~~ivipi~~~llilla~i~~i~~~~~Rr~s~~~r~iyrp~~ 313 (357)
T PHA03290 273 FLIAIPITASLLIILAIIIVITIGIKRRRSIEKHKIYRPKR 313 (357)
T ss_pred EEEEehHHHHHHHHHHHHHHHHhhhhhhhhcccCceecCCC
Confidence 44666666666555554444333333333 34444555443
No 180
>PF11250 DUF3049: Protein of unknown function (DUF3049); InterPro: IPR021410 This eukaryotic family of proteins has no known function.
Probab=21.29 E-value=2.8e+02 Score=21.84 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.8
Q ss_pred EEEEeccCCeEEEEecCCCCCCCCCCCCCCCCccceEEEEEecCEEEEEE
Q psy9685 298 MFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRL 347 (979)
Q Consensus 298 ~~frT~~~~GlLl~~g~~~~~~~~~~~~~~~~~~d~l~l~l~~G~l~~~~ 347 (979)
+.+|+...||-|......- ...+++..+=.||+|++.+
T Consensus 18 ~~~r~~r~dGRLvl~~v~v------------~~~~~~~A~R~~GRL~L~~ 55 (56)
T PF11250_consen 18 VLMRPHREDGRLVLEEVRV------------PSHEYFHAEREDGRLRLQF 55 (56)
T ss_pred EEEEEEccCCEEEEEEEEc------------CCcceEEEEccCCEEEEEe
Confidence 5568888899876554321 1357999999999999875
No 181
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=21.25 E-value=1.2e+02 Score=25.75 Aligned_cols=30 Identities=27% Similarity=0.054 Sum_probs=13.4
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q psy9685 915 LALLIIGPILAILLLGGLISMAVLCLMARQ 944 (979)
Q Consensus 915 ~~~~~~~~~~~~lll~~l~~~~~~~~~~r~ 944 (979)
++..++...++++||+.+.+.++++..+.+
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vvL~C~r~~ 44 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVVLYCHRFH 44 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 344444444444444444444444443333
No 182
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.81 E-value=1.3e+02 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=10.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHh
Q psy9685 917 LLIIGPILAILLLGGLISMAVLCLM 941 (979)
Q Consensus 917 ~~~~~~~~~~lll~~l~~~~~~~~~ 941 (979)
.++++.++.++++.++...++.++.
T Consensus 14 lIVLlvV~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 14 LIVLLVVAGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred eEEeehHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333
No 183
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=20.75 E-value=32 Score=31.48 Aligned_cols=17 Identities=6% Similarity=0.002 Sum_probs=0.4
Q ss_pred hhhhhHHHHHHHHHHHH
Q psy9685 919 IIGPILAILLLGGLISM 935 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~ 935 (979)
++.+...++.+++++.+
T Consensus 78 ~~pi~~sal~v~lVl~l 94 (129)
T PF12191_consen 78 LWPILGSALSVVLVLAL 94 (129)
T ss_dssp S----------------
T ss_pred ehhhhhhHHHHHHHHHH
Confidence 33333444444444433
No 184
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=20.54 E-value=1.6e+02 Score=23.93 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy9685 919 IIGPILAILLLGGLISMAVLCLMARQK 945 (979)
Q Consensus 919 ~~~~~~~~lll~~l~~~~~~~~~~r~~ 945 (979)
+.+.+++++||+.+++++.++-+...+
T Consensus 13 i~G~LIAvvLLLsIl~~lt~~ai~~Qq 39 (66)
T PF13179_consen 13 ITGMLIAVVLLLSILAFLTYWAIKVQQ 39 (66)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444433333333
No 185
>KOG3658|consensus
Probab=20.26 E-value=5.6e+02 Score=30.84 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=8.3
Q ss_pred CEEEEEEeCcEEEEEEEe
Q psy9685 135 SYIAAEMEAGELFVRLQF 152 (979)
Q Consensus 135 dfi~l~L~~G~l~~~~~~ 152 (979)
.++.-.|.+|.+..++.+
T Consensus 118 s~V~~~i~dg~~~g~I~t 135 (764)
T KOG3658|consen 118 SHVLASIEDGVFEGSIQT 135 (764)
T ss_pred cceeEEEecCeEEEEEEe
Confidence 344444445544444444
Done!