RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9685
(979 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 161 bits (411), Expect = 2e-46
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 599 AVDIDECVTHN--CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCED 656
A D+DEC C++ +CI+ + + C+C G+ G CE +++EC+SNPC N C D
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 657 RLAGFVCNCSEEYVGERCESLRQIS-CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR 715
++ F C C Y G CE CA PC C D KI+ + C+CP G+
Sbjct: 62 QIGEFQCICMPGYEGVHCEV--NTDECASSPCLHNGRCLD-KINEFQ-----CECPTGFT 113
Query: 716 GSRCEINIDECASGPCKNSG 735
G C++++
Sbjct: 114 GHLCQVDLHHILDAQKMVWN 133
Score = 106 bits (266), Expect = 4e-27
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKE 639
D + + C C GY C V+ DEC + C + RC+D + + CEC G+ G LC+ +
Sbjct: 61 DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVD 120
Query: 640 IDECLSNPCMNGG 652
+ L M
Sbjct: 121 LHHILDAQKMVWN 133
Score = 96.9 bits (242), Expect = 1e-23
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF-PDPCKDEPCQ 873
GYTG CEID+NEC S+ C N+ C++Q G+++C C G C D C PC
Sbjct: 35 GYTGPRCEIDVNEC--VSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCL 92
Query: 874 NGGTCHEDCRHQADYKCDCLPGWTGKNC 901
+ G C + +++C+C G+TG C
Sbjct: 93 HNGRCLD---KINEFQCECPTGFTGHLC 117
Score = 85.7 bits (213), Expect = 8e-20
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQNGGTCHEDC 882
D++EC L ++ C + G+CIN G ++C C G C + C PCQN TC +
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD-- 61
Query: 883 RHQADYKCDCLPGWTGKNC 901
+++C C+PG+ G +C
Sbjct: 62 -QIGEFQCICMPGYEGVHC 79
Score = 63.8 bits (156), Expect = 3e-12
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQ 873
GY G CE++ +EC S C +NG C+++ +++C C G+LC D
Sbjct: 73 GYEGVHCEVNTDECA--SSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKM 130
Query: 874 NGG 876
Sbjct: 131 VWN 133
Score = 39.1 bits (92), Expect = 0.001
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 815 GYTGEMCEIDINECELSSDMCGNN 838
G+TG +C++D++ + M N+
Sbjct: 111 GFTGHLCQVDLHHILDAQKMVWNH 134
Score = 31.0 bits (71), Expect = 0.74
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
G C D +F C C F GH CQ +
Sbjct: 94 NGRCLDKINEFQCECPTGFTGHLCQVD 120
Score = 30.3 bits (69), Expect = 1.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
G C + F C C++ + G C+ +
Sbjct: 18 AGKCINTLGSFECQCLQGYTGPRCEID 44
Score = 29.9 bits (68), Expect = 1.8
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
C D +F C C+ + G C+ N
Sbjct: 56 DATCLDQIGEFQCICMPGYEGVHCEVN 82
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 161 bits (410), Expect = 1e-45
Identities = 35/172 (20%), Positives = 50/172 (29%), Gaps = 9/172 (5%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDE- 642
D D+C T CQN +C DG+ Y+C C G+EG CE +
Sbjct: 24 EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL 83
Query: 643 CLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYF 702
C + C + VC+C+ Y I PC + + +
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG-KACIPTGPYPCGKQTLERRKRSVAQ- 141
Query: 703 PQGPICDCPPGYR-GSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTAT 753
G S D P +N +D N T
Sbjct: 142 -----ATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLT 188
Score = 140 bits (354), Expect = 4e-38
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 6/145 (4%)
Query: 610 CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEY 669
C + + E K+ D+C ++PC N G+C+D L + C C E +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 670 VGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASG 729
G+ CE + C+ C + +C C GY +
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEE------QNSVVCSCARGYTLADNGKACIPTGPY 125
Query: 730 PCKNSGQCIDDVNAFICNCTNTATG 754
PC + ++
Sbjct: 126 PCGKQTLERRKRSVAQATSSSGEAP 150
Score = 106 bits (266), Expect = 2e-26
Identities = 26/218 (11%), Positives = 50/218 (22%), Gaps = 40/218 (18%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISP 700
EC+ C E + + C PC C+D
Sbjct: 10 RECMEETCSYEEARE-----VFEDSDKTNEFWNKY-KDGDQCETSPCQNQGKCKDG---- 59
Query: 701 YFPQGPICDCPPGYRGSRCEINIDE-CASGPCKNSGQCIDDVNAFICNCTNTATGASMGC 759
C C G+ G CE+ + C+ C ++ N+ +C+C
Sbjct: 60 --LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA---------- 107
Query: 760 LGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGE 819
+T + +C G T+
Sbjct: 108 -----------RGYT----LADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDS 152
Query: 820 MCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTC 857
+ + + D N + ++ +
Sbjct: 153 ITWKPYDAAD--LDPTENPFDLLDFNQTQPERGDNNLT 188
Score = 102 bits (257), Expect = 4e-25
Identities = 27/206 (13%), Positives = 47/206 (22%), Gaps = 50/206 (24%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDV 741
C ++ C + + D + D+C + PC+N G+C D +
Sbjct: 12 CMEETCSYEEAREVF-----------EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGL 60
Query: 742 NAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGL 801
+ C C G+ C E F+ G
Sbjct: 61 GEYTCTCLE----------------------------GFEGKN-C-ELFTRKLCSLDNGD 90
Query: 802 -----ADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDT 856
+ V + GYT CG + +
Sbjct: 91 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTG--PYPCGKQTLERRKRSVAQATSSSGE 148
Query: 857 CGYL--CNFPDPCKDEPCQNGGTCHE 880
D +P +N +
Sbjct: 149 APDSITWKPYDAADLDPTENPFDLLD 174
Score = 86.3 bits (214), Expect = 2e-19
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC--NFPDPCKDEPC 872
D ++C + C N G+C + G+Y C C G C C +
Sbjct: 32 TNEFWNKYKDGDQC--ETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNG 89
Query: 873 QNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
CHE Q C C G+T +
Sbjct: 90 DCDQFCHE---EQNSVVCSCARGYTLADN 115
Score = 76.3 bits (188), Expect = 6e-16
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQ 873
G+ G+ CE+ + S D + C + C+C P PC
Sbjct: 70 GFEGKNCELFTRKL-CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCG 128
Query: 874 NGGTCHEDCRHQADYKCDCLPGWTGKNCTEV 904
R ++ + G + T
Sbjct: 129 KQTLER---RKRSVAQATSSSGEAPDSITWK 156
Score = 59.8 bits (145), Expect = 3e-10
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF-PDPCKDEPCQNGGTCHEDC 882
++ + L + C + + + D C+ PCQN G C +
Sbjct: 2 EMKKGHLERE-CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKD-- 58
Query: 883 RHQADYKCDCLPGWTGKNC 901
+Y C CL G+ GKNC
Sbjct: 59 -GLGEYTCTCLEGFEGKNC 76
Score = 45.9 bits (109), Expect = 1e-05
Identities = 4/53 (7%), Positives = 10/53 (18%), Gaps = 1/53 (1%)
Query: 580 DPLTSYACKCPAGYSSE-TCAVDIDECVTHNCQNGARCIDGVARYSCECTPGW 631
+ +G + + D +N +D
Sbjct: 135 RKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 31.3 bits (71), Expect = 1.0
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
G C D +++C+C+ F G C+
Sbjct: 53 QGKCKDGLGEYTCTCLEGFEGKNCELF 79
Score = 29.0 bits (65), Expect = 5.9
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
C + CSC R +
Sbjct: 92 DQFCHEEQNSVVCSCARGYTLADNGKA 118
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 140 bits (354), Expect = 7e-39
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 6/128 (4%)
Query: 610 CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEY 669
C + + E K+ D+C ++PC N G+C+D L + C C E +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 670 VGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASG 729
G+ CE + C+ C + +C C GY +
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEE------QNSVVCSCARGYTLADNGKACIPTGPY 125
Query: 730 PCKNSGQC 737
PC
Sbjct: 126 PCGKQTLE 133
Score = 100 bits (252), Expect = 4e-25
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDE-CVTHNCQNGARCIDGVARYSCECTPGWEGALCEK 638
D L Y C C G+ + C + + C N C + C C G+ A K
Sbjct: 58 DGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK 117
Query: 639 EIDECLSNPCMNGGQC 654
PC
Sbjct: 118 ACIPTGPYPCGKQTLE 133
Score = 88.5 bits (220), Expect = 8e-21
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC--NFPDPCKDEPC 872
D ++C + C N G+C + G+Y C C G C C +
Sbjct: 32 TNEFWNKYKDGDQC--ETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNG 89
Query: 873 QNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
CHE Q C C G+T +
Sbjct: 90 DCDQFCHE---EQNSVVCSCARGYTLADN 115
Score = 76.6 bits (189), Expect = 1e-16
Identities = 24/160 (15%), Positives = 39/160 (24%), Gaps = 39/160 (24%)
Query: 685 QPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAF 744
+ C + + D + D+C + PC+N G+C D + +
Sbjct: 10 RECMEETCSYEE------AREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEY 63
Query: 745 ICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDT---LSCPECFSLDSGPGGPGL 801
C C G+ L + SLD+G
Sbjct: 64 TCTCLE----------------------------GFEGKNCELFTRKLCSLDNGDCDQFC 95
Query: 802 ADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGEC 841
+ V + GYT CG
Sbjct: 96 HEEQNSVVCSCARGYTLADNGKACIPTG--PYPCGKQTLE 133
Score = 70.8 bits (174), Expect = 1e-14
Identities = 20/154 (12%), Positives = 34/154 (22%), Gaps = 32/154 (20%)
Query: 728 SGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCP 787
C ++ + T + Y D C
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWN--K--------------------YKDGDQC- 45
Query: 788 ECFSLDSGPGGPGLA--DSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQP 845
++ P D T + G+ G+ CE+ + S D + C +
Sbjct: 46 -----ETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL-CSLDNGDCDQFCHEEQ 99
Query: 846 GDYKCACQFDTCGYLCNFP-DPCKDEPCQNGGTC 878
C+C P PC
Sbjct: 100 NSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 62.3 bits (152), Expect = 1e-11
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 835 CGNNGECINQPGDYKCACQFDTCGYLCNF-PDPCKDEPCQNGGTCHEDCRHQADYKCDCL 893
C + + + D C+ PCQN G C + +Y C CL
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKD---GLGEYTCTCL 68
Query: 894 PGWTGKNC 901
G+ GKNC
Sbjct: 69 EGFEGKNC 76
Score = 41.5 bits (98), Expect = 2e-04
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 3/31 (9%)
Query: 871 PCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C +E+ R + D N
Sbjct: 11 ECMEETCSYEEAR---EVFEDSDKTNEFWNK 38
Score = 31.9 bits (73), Expect = 0.33
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
G C D +++C+C+ F G C+
Sbjct: 53 QGKCKDGLGEYTCTCLEGFEGKNCELF 79
Score = 29.6 bits (67), Expect = 2.4
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
C + CSC R +
Sbjct: 92 DQFCHEEQNSVVCSCARGYTLADNGKA 118
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 129 bits (325), Expect = 6e-35
Identities = 41/155 (26%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 603 DECVTHNCQNGARCIDGVAR--YSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG 660
D C + C+NG C+ G+A +SCEC G+ C ++
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAG------- 53
Query: 661 FVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPY-FPQGPICDCPPGYRGSRC 719
C PC+ G C+ ++ G +C CP G+ G C
Sbjct: 54 --------------------PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHC 93
Query: 720 EINIDECASGPCKNSGQCIDDVNAFICNCTNTATG 754
+ NI+EC PCKN G C D V + C C G
Sbjct: 94 QHNINECEVEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 120 bits (303), Expect = 7e-32
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 577 HDSDPLTSYACKCPAGYSSETCAVDID------------ECVTHNCQNGARCI------- 617
S++C+CP G++ C+ ++ C + C NG C
Sbjct: 15 LPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRG 74
Query: 618 DGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
D Y C+C G+ G C+ I+EC PC NGG C D +A + C C E++G C+
Sbjct: 75 DTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 95.2 bits (237), Expect = 4e-23
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 575 SPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA 634
+ D Y CKCP G++ C +I+EC C+NG C D VA YSCEC + G
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR 129
Query: 635 LCEKEIDECLSN 646
C+ + +
Sbjct: 130 NCQYKGGGHHHH 141
Score = 83.2 bits (206), Expect = 7e-19
Identities = 36/195 (18%), Positives = 55/195 (28%), Gaps = 56/195 (28%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCK-NSGQCIDD 740
C PC G +C F C+CP G+ C ++ + ++G C +
Sbjct: 3 CDPNPCENGGICLPGLADGSF----SCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPN 58
Query: 741 VNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPG 800
C N T C + CP
Sbjct: 59 ------PCHNGGT-----CEISEAYRGDTFIGYV---------CKCPR------------ 86
Query: 801 LADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYL 860
G+ G C+ +INECE + C N G C + +Y C C + G
Sbjct: 87 --------------GFNGIHCQHNINECE--VEPCKNGGICTDLVANYSCECPGEFMGRN 130
Query: 861 CNFP-DPCKDEPCQN 874
C + +
Sbjct: 131 CQYKGGGH--HHHHH 143
Score = 78.6 bits (194), Expect = 3e-17
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 815 GYTGEMCEIDINEC----------ELSSDMCGNNGECI-------NQPGDYKCACQFDTC 857
G+T C + + + C N G C + Y C C
Sbjct: 30 GFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN 89
Query: 858 GYLCNF-PDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
G C + C+ EPC+NGG C + A+Y C+C + G+NC
Sbjct: 90 GIHCQHNINECEVEPCKNGGICTD---LVANYSCECPGEFMGRNC 131
Score = 67.8 bits (166), Expect = 1e-13
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 827 ECELSSDMCGNNGECIN--QPGDYKCAC-----------QFDTCGY--LCNFPDPCKDEP 871
C + C N G C+ G + C C + PC P
Sbjct: 2 IC--DPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 872 CQNGGTCHEDCRHQAD----YKCDCLPGWTGKNCTE 903
C NGGTC ++ D Y C C G+ G +C
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH 95
Score = 55.9 bits (135), Expect = 2e-09
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C PC+NGG C + C+C G+T NC
Sbjct: 1 DICDPNPCENGGICL-PGLADGSFSCECPDGFTDPNC 36
Score = 36.2 bits (84), Expect = 0.014
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHN 609
+Y+C+CP + C H+
Sbjct: 117 NYSCECPGEFMGRNCQYKGGGHHHHH 142
Score = 32.4 bits (74), Expect = 0.28
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
GG CTDL ++SC C F+G CQY
Sbjct: 108 GGICTDLVANYSCECPGEFMGRNCQYK 134
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 130 bits (328), Expect = 6e-35
Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 26/167 (15%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDEC 643
A C Y C C + G D + C GW G C + I C
Sbjct: 16 RSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQN--GNKTCMEGWMGPECNRAI--C 68
Query: 644 LSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFP 703
G C+ C C + G C+ C P +C +
Sbjct: 69 RQGCSPKHGSCKL---PGDCRCQYGWQGLYCDK-----CIPHPGCVHGICNE-------- 112
Query: 704 QGPICDCPPGYRGSRCEINIDECAS-GPCKNSGQCID-DVNAFICNC 748
C C + G C+ +++ C + PC N G C + + + C+C
Sbjct: 113 -PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSC 158
Score = 116 bits (293), Expect = 3e-30
Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 17/138 (12%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDEC 643
+ C G+ C I C C C GW+G C D+C
Sbjct: 49 NGNKTCMEGWMGPECNRAICRQ--GCSPKHGSCKLP---GDCRCQYGWQGLYC----DKC 99
Query: 644 LSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFP 703
+ +P G C + + C C + G+ C+ QPC G C +T Y
Sbjct: 100 IPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKY-- 154
Query: 704 QGPICDCPPGYRGSRCEI 721
C CP GY G CEI
Sbjct: 155 ---QCSCPEGYSGPNCEI 169
Score = 100 bits (250), Expect = 2e-24
Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 27/150 (18%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCN 664
+H+ + R + C + G C K C G D+
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQ--NGNKT 53
Query: 665 CSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINID 724
C E ++G C + C C+ C C G++G C D
Sbjct: 54 CMEGWMGPECN---RAICRQGCSPKHGSCKL---------PGDCRCQYGWQGLYC----D 97
Query: 725 ECASGPCKNSGQCIDDVNAFICNCTNTATG 754
+C P G C + + C C G
Sbjct: 98 KCIPHPGCVHGICNEP---WQCLCETNWGG 124
Score = 77.4 bits (191), Expect = 1e-16
Identities = 37/222 (16%), Positives = 55/222 (24%), Gaps = 58/222 (26%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDV 741
+ + C Y G C C D
Sbjct: 2 RGSHHHHHHGSIEGRSA---------VTCDDYYYGFGCN---KFCRPRDDFFGHYACDQN 49
Query: 742 NAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGL 801
C G + C + P
Sbjct: 50 GN--KTCMEGWMGP------------------------ECNRAICRQ----GCSPKHGSC 79
Query: 802 ADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC 861
G G+ G C ++C +G C ++C C+ + G LC
Sbjct: 80 KLPG---DCRCQYGWQGLYC----DKCI--PHPGCVHGICNE---PWQCLCETNWGGQLC 127
Query: 862 NFP-DPCK-DEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
+ + C +PC NGGTC Y+C C G++G NC
Sbjct: 128 DKDLNYCGTHQPCLNGGTCSNT--GPDKYQCSCPEGYSGPNC 167
Score = 72.4 bits (178), Expect = 8e-15
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN 874
G+ G C I +G C C CQ+ G C D C P
Sbjct: 57 GWMGPECNRAICRQ----GCSPKHGSCKL---PGDCRCQYGWQGLYC---DKCIPHPGCV 106
Query: 875 GGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
G C+E ++C C W G+ C +
Sbjct: 107 HGICNEP------WQCLCETNWGGQLCDK 129
Score = 61.2 bits (149), Expect = 5e-11
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 14/89 (15%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN 874
Y G C + +Q G C G CN C+
Sbjct: 24 YYYGFGCNKFCRPRD-----DFFGHYACDQNG--NKTCMEGWMGPECN-RAICRQGCSPK 75
Query: 875 GGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
G+C + C C GW G C +
Sbjct: 76 HGSC------KLPGDCRCQYGWQGLYCDK 98
Score = 52.0 bits (125), Expect = 8e-08
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 835 CGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLP 894
++G G C G+ CN C+ G + + C+
Sbjct: 7 HHHHGSIE---GRSAVTCDDYYYGFGCN--KFCRPRDDFFGHYACDQ-----NGNKTCME 56
Query: 895 GWTGKNCTE 903
GW G C
Sbjct: 57 GWMGPECNR 65
Score = 40.4 bits (95), Expect = 8e-04
Identities = 4/37 (10%), Positives = 8/37 (21%), Gaps = 6/37 (16%)
Query: 867 CKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
+ G+ C + G C +
Sbjct: 2 RGSHHHHHHGSIE------GRSAVTCDDYYYGFGCNK 32
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 123 bits (311), Expect = 4e-33
Identities = 30/151 (19%), Positives = 40/151 (26%), Gaps = 42/151 (27%)
Query: 589 CPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPC 648
D D+C + CQNG C D + Y C C P +EG CE D+ L
Sbjct: 34 AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN 93
Query: 649 MNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPIC 708
NGG C D + C
Sbjct: 94 ENGGCE------------------------------------QYCSDHTGTKR-----SC 112
Query: 709 DCPPGYRGSRCEINIDECASGPCKNSGQCID 739
C GY ++ PC ++
Sbjct: 113 RCHEGYSLLADGVSCTPTVEYPCGK-IPILE 142
Score = 92.0 bits (229), Expect = 5e-22
Identities = 29/144 (20%), Positives = 43/144 (29%), Gaps = 51/144 (35%)
Query: 610 CQNGARCIDGVARYSCECTP-GWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEE 668
C+ +C AR + + + D+C S+PC NGG C+D+L +
Sbjct: 17 CKEE-QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSY------- 68
Query: 669 YVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECAS 728
IC C P + G CE + D+
Sbjct: 69 --------------------------------------ICFCLPAFEGRNCETHKDDQLI 90
Query: 729 GPCKNSG---QCIDDV-NAFICNC 748
+N G C D C C
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRC 114
Score = 90.5 bits (225), Expect = 2e-21
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNG---ARCIDGV-ARYSCECTPGWEGAL 635
D L SY C C + C D+ + +NG C D + SC C G+
Sbjct: 63 DQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA 122
Query: 636 CEKEIDECLSNPCMNGGQCE 655
+ PC E
Sbjct: 123 DGVSCTPTVEYPCGKIPILE 142
Score = 84.3 bits (209), Expect = 3e-19
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF-PDPCKDEPCQ 873
+ D ++C +S C N G C +Q Y C C G C D +
Sbjct: 37 TKLFWISYSDGDQC--ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE 94
Query: 874 NGGTCHEDCRHQ-ADYKCDCLPGWTGKNC 901
NGG H C C G++
Sbjct: 95 NGGCEQYCSDHTGTKRSCRCHEGYSLLAD 123
Score = 70.8 bits (174), Expect = 1e-14
Identities = 25/137 (18%), Positives = 36/137 (26%), Gaps = 30/137 (21%)
Query: 708 CDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGD 767
D + D+CAS PC+N G C D + ++IC C
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC------------------- 72
Query: 768 LLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLA---DSGPGVQTTPILGYTGEMCEID 824
LP F G + + GG +G GY+ +
Sbjct: 73 --LPAFE----GRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS 126
Query: 825 INECELSSDMCGNNGEC 841
CG
Sbjct: 127 CTPTV--EYPCGKIPIL 141
Score = 60.8 bits (148), Expect = 4e-11
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 839 GECINQPGDYKCACQFDTC------GYLCNF-PDPCKDEPCQNGGTCHEDCRHQADYKCD 891
EC + ++ A + ++ D C PCQNGG+C + Y C
Sbjct: 15 RECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKD---QLQSYICF 71
Query: 892 CLPGWTGKNC-TEVPEYLPS 910
CLP + G+NC T + L
Sbjct: 72 CLPAFEGRNCETHKDDQLIC 91
Score = 53.5 bits (129), Expect = 1e-08
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNG---ECINQPG-DYKCACQFDTCGYLCNFP-DPCKD 869
+ G CE ++ + N G C + G C C P +
Sbjct: 75 AFEGRNCETHKDDQ--LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132
Query: 870 EPCQNGGTC 878
PC
Sbjct: 133 YPCGKIPIL 141
Score = 32.3 bits (74), Expect = 0.26
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
GG C D + + C C+ F G C+ +
Sbjct: 58 GGSCKDQLQSYICFCLPAFEGRNCETH 84
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 122 bits (309), Expect = 1e-32
Identities = 25/153 (16%), Positives = 36/153 (23%), Gaps = 45/153 (29%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSN 646
VD D+C + C NG C D + Y C C G+EG CE + + N
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 647 PCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGP 706
+
Sbjct: 93 GRCKQFCKTGADSKV--------------------------------------------- 107
Query: 707 ICDCPPGYRGSRCEINIDECASGPCKNSGQCID 739
+C C GYR + + + PC
Sbjct: 108 LCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHS 140
Score = 101 bits (253), Expect = 3e-25
Identities = 16/78 (20%), Positives = 27/78 (34%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKE 639
D + SY C C G+ + C +D + + ++ C CT G+ A +K
Sbjct: 64 DDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKS 123
Query: 640 IDECLSNPCMNGGQCEDR 657
+ PC
Sbjct: 124 CKPAVPFPCGRVSVSHSP 141
Score = 81.6 bits (202), Expect = 3e-18
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 12/108 (11%)
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPY 701
EC+ C E N + + C PC G +C+D
Sbjct: 17 ECIEEKCSFEEARE-----VFENTEKTNEFWKQYV-DGDQCEPNPCLNGGLCKDD----- 65
Query: 702 FPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCT 749
C C G+ G CE++ + +C+CT
Sbjct: 66 -INSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCT 112
Score = 80.1 bits (198), Expect = 9e-18
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN 874
+D ++CE + C N G C + Y+C CQ G C C + +
Sbjct: 38 TNEFWKQYVDGDQCE--PNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRC 95
Query: 875 GGTCHEDCRHQADYKCDCLPGWTGKNC 901
C + C C G+
Sbjct: 96 KQFCKTG--ADSKVLCSCTTGYRLAPD 120
Score = 77.0 bits (190), Expect = 1e-16
Identities = 23/173 (13%), Positives = 37/173 (21%), Gaps = 59/173 (34%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDV 741
C ++ C F + + + ++ D+C PC N G C DD+
Sbjct: 18 CIEEKCSFEEAREV-----------FENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDI 66
Query: 742 NAFICNCTNTATG----------ASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFS 791
N++ C C G G + SC
Sbjct: 67 NSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKV----------LCSCTT--- 113
Query: 792 LDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQ 844
GY + CG +
Sbjct: 114 -----------------------GYRLAPDQKSCKPAV--PFPCGRVSVSHSP 141
Score = 63.5 bits (155), Expect = 5e-12
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 839 GECINQPGDYKCACQ-FDTC-----GYLCNF-PDPCKDEPCQNGGTCHEDCRHQADYKCD 891
ECI + ++ A + F+ + D C+ PC NGG C +D Y+C
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDD---INSYECW 72
Query: 892 CLPGWTGKNC 901
C G+ GKNC
Sbjct: 73 CQVGFEGKNC 82
Score = 61.6 bits (150), Expect = 3e-11
Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 3/67 (4%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQ 873
G+ G+ CE+D + C+C P PC
Sbjct: 76 GFEGKNCELDATCN--IKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCG 133
Query: 874 NGGTCHE 880
H
Sbjct: 134 RVSVSHS 140
Score = 31.9 bits (73), Expect = 0.43
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
GG C D + C C F G C+ +
Sbjct: 59 GGLCKDDINSYECWCQVGFEGKNCELD 85
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 124 bits (314), Expect = 2e-31
Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 25/155 (16%)
Query: 582 LTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID 641
+T C CP G+ C D C + C NG C C C PG EG CE I
Sbjct: 194 VTPGFCICPPGFYGVNC--DKANC-STTCFNGGTCFYP---GKCICPPGLEGEQCE--IS 245
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPY 701
+C PC NGG+C C CS+ Y G+ C + C C +
Sbjct: 246 KC-PQPCRNGGKCIG---KSKCKCSKGYQGDLCS----KPVCEPGCGAHGTCHE------ 291
Query: 702 FPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQ 736
C C G+ G C + G +
Sbjct: 292 ---PNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
Score = 124 bits (312), Expect = 4e-31
Identities = 48/165 (29%), Positives = 58/165 (35%), Gaps = 31/165 (18%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDEC 643
C+CP G+ C + C NG C+ C C PG+ G C+K
Sbjct: 164 RRICECPDGFHGPHCEKALCTP---RCMNGGLCVTP---GFCICPPGFYGVNCDKA---N 214
Query: 644 LSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFP 703
S C NGG C C C GE+CE IS QPC G C I
Sbjct: 215 CSTTCFNGGTCFY---PGKCICPPGLEGEQCE----ISKCPQPCRNGGKC----IGKS-- 261
Query: 704 QGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNC 748
C C GY+G C + E C G C + C C
Sbjct: 262 ---KCKCSKGYQGDLCSKPVCEP---GCGAHGTCHEP---NKCQC 297
Score = 119 bits (299), Expect = 2e-29
Identities = 48/176 (27%), Positives = 65/176 (36%), Gaps = 31/176 (17%)
Query: 579 SDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEK 638
+ + +TC EC C+NG C + CEC G+ G CEK
Sbjct: 127 NSEGNTILKTPQNAIFFKTC--QQAEC-PGGCRNGGFCNER---RICECPDGFHGPHCEK 180
Query: 639 EIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKI 698
+ CMNGG C + C C + G C+ + C+ G C
Sbjct: 181 A---LCTPRCMNGGLC---VTPGFCICPPGFYGVNCD----KANCSTTCFNGGTCFYP-- 228
Query: 699 SPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATG 754
C CPPG G +CEI +C PC+N G+CI C C+ G
Sbjct: 229 -------GKCICPPGLEGEQCEI--SKC-PQPCRNGGKCIGK---SKCKCSKGYQG 271
Score = 103 bits (259), Expect = 4e-24
Identities = 37/180 (20%), Positives = 52/180 (28%), Gaps = 27/180 (15%)
Query: 576 PHDSDPLTSYACKCPAGYSSET-CAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA 634
P + PL + C D +
Sbjct: 86 PTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFK 144
Query: 635 LCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQ 694
C++ EC C NGG C + +C C + + G CE + C G +C
Sbjct: 145 TCQQ--AEC-PGGCRNGGFCNE---RRICECPDGFHGPHCE----KALCTPRCMNGGLC- 193
Query: 695 DTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATG 754
++P C CPPG+ G C+ S C N G C C C G
Sbjct: 194 ---VTPG-----FCICPPGFYGVNCDKA---NCSTTCFNGGTC---FYPGKCICPPGLEG 239
Score = 83.0 bits (205), Expect = 3e-17
Identities = 46/270 (17%), Positives = 69/270 (25%), Gaps = 85/270 (31%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISP 700
D ++ P + + + C + G + I +
Sbjct: 85 DPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTI----------- 133
Query: 701 YFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATG------ 754
+ C+ G C+N G C + IC C + G
Sbjct: 134 ------LKTPQNAIFFKTCQQA---ECPGGCRNGGFCNER---RICECPDGFHGPHCEKA 181
Query: 755 -ASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPI 813
+ C+ G + P CP
Sbjct: 182 LCTPRCMNG---GLCVTPG----------FCICPP------------------------- 203
Query: 814 LGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQ 873
G+ G C+ S C N G C KC C G C C +PC+
Sbjct: 204 -GFYGVNCDKANC-----STTCFNGGTCFY---PGKCICPPGLEGEQCEISK-C-PQPCR 252
Query: 874 NGGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
NGG C KC C G+ G C++
Sbjct: 253 NGGKCI------GKSKCKCSKGYQGDLCSK 276
Score = 68.7 bits (168), Expect = 1e-12
Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN 874
G GE CEI +C C N G+CI KC C G LC+ P + C
Sbjct: 236 GLEGEQCEIS--KC---PQPCRNGGKCIG---KSKCKCSKGYQGDLCS--KPVCEPGCGA 285
Query: 875 GGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
GTCHE KC C GW G++C +
Sbjct: 286 HGTCHEP------NKCQCQEGWHGRHCNK 308
Score = 49.5 bits (118), Expect = 3e-06
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP-DPCKDEPCQ 873
GY G++C + E CG +G C KC CQ G CN +
Sbjct: 268 GYQGDLCSKPVCEP-----GCGAHGTCHE---PNKCQCQEGWHGRHCNKRYEASLIGTKH 319
Query: 874 NGGTCH 879
+ H
Sbjct: 320 HHH-HH 324
Score = 40.2 bits (94), Expect = 0.002
Identities = 6/76 (7%), Positives = 12/76 (15%), Gaps = 3/76 (3%)
Query: 828 CELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQAD 887
L + + + G G+ C +
Sbjct: 76 RSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVM---NSEGNT 132
Query: 888 YKCDCLPGWTGKNCTE 903
K C +
Sbjct: 133 ILKTPQNAIFFKTCQQ 148
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 123 bits (308), Expect = 2e-28
Identities = 94/666 (14%), Positives = 183/666 (27%), Gaps = 137/666 (20%)
Query: 93 VRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQF 152
+ IS RT + G I + G R + + + A EM G L++ L
Sbjct: 440 AKKTGSISFDFRTTEPNGLILFSHG-KPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 498
Query: 153 NSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDV-QVLYLG 211
S K+ DG + + R+ + +N + ILD+ LYLG
Sbjct: 499 GSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLG 558
Query: 212 GIPETVHHHRSIRSPYQPSRSYP------------------------------------- 234
G+PE + +Y
Sbjct: 559 GLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRET 618
Query: 235 ----------SGGHCTDLWRDFSCSCVRP-FLGHTCQYNFTAATFGHENTTNSLVTVAVG 283
+ G C D W + C C +LG +C+ T ++ + + + +
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDG----SMFMKIQLP 674
Query: 284 GVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGEL 343
V D+S+ R+++ G + + + E++AG +
Sbjct: 675 VV---MHTEAEDVSLRFRSQRAYGILMATT-------------SRDSADTLRLELDAGRV 718
Query: 344 FVRLQFNSTPESYNVGGVKLADGNNHLIQTISS----TGILDVQVLYLGGIPETVHHHRS 399
+ + PE+ G L D H ++ + +D Q G +
Sbjct: 719 KLTVNLGKGPETL-FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEF 777
Query: 400 IRSPYQPSRSYPRWATYDE-----MENYTTARRRYSRQTAGEKQFSPLPNFKGIIHDVQI 454
++ +++ T Y N + ++
Sbjct: 778 HNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIA 837
Query: 455 YFISGSGDRSSP--------------------SSNG----AGSEETSYIAAEMEAGELFV 490
++ S S +G + +I E+ G L
Sbjct: 838 DPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHY 897
Query: 491 RLQFNSTPESYNVG-GVKLADGNNHLIQVGPGFDFQRIDHPFTKKHVIVCVLNAHQLSGI 549
+ L D H + + ++ ++ + I
Sbjct: 898 VFDLGNGANLIKGSSNKPLNDNQWHNVMIS-----------RDTSNLHTVKIDTKITTQI 946
Query: 550 SDQADLVRCTSEAYLNLIIYISWLLSPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHN 609
+ A + S+ Y+ + ++ G+ +VD++ +
Sbjct: 947 TAGARNLDLKSDLYIGGV--------AKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDL 998
Query: 610 CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEE- 668
+ C + G CE C + C N G C + GF C+CS
Sbjct: 999 ISDALFCNGQI-------ERG-----CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS 1046
Query: 669 YVGERC 674
+ G C
Sbjct: 1047 FSGPLC 1052
Score = 121 bits (305), Expect = 3e-28
Identities = 114/940 (12%), Positives = 231/940 (24%), Gaps = 229/940 (24%)
Query: 97 VDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEM-EAGELFVRLQFNST 155
++S ++TR RG + Y G ++ + G L +
Sbjct: 22 SEMSFQLKTRSARGLVLYFDDEG-------------FCDFLELILTRGGRLQLSFSIFCA 68
Query: 156 PESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNG-TEYFRKTISSTGILDV-QVLYLGGI 213
+ + + DG H +++ R + ++ + + S + V L++GG+
Sbjct: 69 EPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGL 128
Query: 214 PETVHHHRSIRSPYQPSRSYP--------------------------------------- 234
P + + P
Sbjct: 129 PPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCE 188
Query: 235 -----------SGGHCTDLWRDFSCSCVRPFLG---HTCQYNFTAATFGHENTTNSLVTV 280
+GG C+ + C C R + ATF +
Sbjct: 189 AGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKG----SEYFCY 244
Query: 281 AVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEA 340
+ ++ + +I++ +T Q G + + G S D Y+ ++
Sbjct: 245 DLSQNPIQSSSD--EITLSFKTLQRNGLMLHTGKSAD---------------YVNLALKN 287
Query: 341 GELFVRLQFNSTPESYNV--GGVKLADGNNH--LIQTISSTGILDV-------------- 382
G + + + S V K D H + + V
Sbjct: 288 GAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDY 347
Query: 383 ------QVLYLGGIPETVHHHRSIRSPY-------------------------QPSRSYP 411
Y+GG P T S S +
Sbjct: 348 TMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKI 407
Query: 412 RWATYDEMENYTTARRRYSRQTAGEKQFSPLPNFKGIIHDVQIYFI----------SGSG 461
+ EN T K + F S
Sbjct: 408 HGVVAFKCENVATLDPITFETPESFISLPKWNAKKTG--SISFDFRTTEPNGLILFSHGK 465
Query: 462 DRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVGPG 521
R + + + A EM G L++ L S K+ DG + +
Sbjct: 466 PRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQ-- 523
Query: 522 FDFQRIDHPFTKKHVIVCVLNAHQLSGISDQADLVRCTSEAYLNLIIYISWLLSPHDSDP 581
+ + V +++++ E YL + P
Sbjct: 524 ---------RDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGL-------------P 561
Query: 582 LTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID 641
P + C+ + + D + T G + + +
Sbjct: 562 ENKAGLVFPTEVWTALLNYGYVGCI-RDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAK 620
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPY 701
CLSNPC N G C D +VC+CS Y G C+
Sbjct: 621 PCLSNPCKNNGMCRDGWNRYVCDCS------------------GTGYLGRSCEREATVLS 662
Query: 702 F-PQGPI-CDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGC 759
+ + P ++++ + + T+ + ++
Sbjct: 663 YDGSMFMKIQLPVVMHTEAEDVSLRFRSQRA-----------YGILMATTSRDSADTLRL 711
Query: 760 LGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGE 819
E+ G + T +TL + T + G+
Sbjct: 712 --ELDAGRV---KLTVNLGKGPETLFAGYNLN--------------DNEWHTVRVVRRGK 752
Query: 820 MCEIDINECELSSDMCGNNGECINQPGDYKCAC--QFDTCGYLCNFPDPCKDEPCQNGGT 877
++ +++ + + + + + NF NG
Sbjct: 753 SLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIG-HLQSLTFNGMA 811
Query: 878 CHEDCRHQADYKCDCLPGWTGKNCTEVPEYLPSRVVDLAL 917
+ C++ C+ + +N P ++ +AL
Sbjct: 812 YIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVAL 851
Score = 99 bits (248), Expect = 2e-21
Identities = 51/368 (13%), Positives = 95/368 (25%), Gaps = 97/368 (26%)
Query: 93 VRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQF 152
+ + +T L G I Y G G +I E+ G L
Sbjct: 856 AYTSMHLFFQFKTTSLDGLILYNSGDG--------------NDFIVVELVKGYLHYVFDL 901
Query: 153 NSTPESYNVG-GVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYL 210
+ L D H + + R+ + + T+ + + LD++ LY+
Sbjct: 902 GNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYI 961
Query: 211 GGIPETVHHHRSIRSPYQP----------------------------------------- 229
GG+ + + +
Sbjct: 962 GGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQ 1021
Query: 230 SRSYPSGGHCTDLWRDFSCSC-VRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARR 288
S + G C W FSC C + F G C T F +T R
Sbjct: 1022 EDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG---GQITYKWPPNDRP 1078
Query: 289 AVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQ 348
+ R +++ T Q + + S S Y+ + G++ V+
Sbjct: 1079 STRA-DRLAIGFSTVQKEAVLVRVDSS------------SGLGDYLELHIHQGKIGVKFN 1125
Query: 349 FNSTPESYNVGGVKLADGNNHLIQ-----------------------TISSTGILDVQVL 385
+ + + DG H+++ T +
Sbjct: 1126 VGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATI 1185
Query: 386 YLGGIPET 393
+GG +
Sbjct: 1186 IIGGKEQG 1193
Score = 67.9 bits (165), Expect = 1e-11
Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 16/160 (10%)
Query: 60 FVTSPDFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSG 119
F T + +T R + R +++ T Q + + S
Sbjct: 1047 FSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRA-DRLAIGFSTVQKEAVLVRVDSS- 1104
Query: 120 DRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRN 179
S Y+ + G++ V+ + + + DG H+++ R+
Sbjct: 1105 -----------SGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRS 1153
Query: 180 VTLVQVKLNG---TEYFRKTISSTGILDVQVLYLGGIPET 216
++++ E + T + +GG +
Sbjct: 1154 GGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG 1193
Score = 42.5 bits (99), Expect = 7e-04
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 17/108 (15%)
Query: 797 GGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDT 856
G G+ G + +D+N D+ + C Q C
Sbjct: 963 GVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLP--DLISDALFCNGQIER-GCEGP--- 1016
Query: 857 CGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDC-LPGWTGKNCTE 903
C+++ C N G C + + CDC + ++G C +
Sbjct: 1017 -------STTCQEDSCSNQGVCLQ---QWDGFSCDCSMTSFSGPLCND 1054
Score = 42.5 bits (99), Expect = 8e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 719 CEINIDECASGPCKNSGQCIDDVNAFICNCTNTA 752
CE C C N G C+ + F C+C+ T+
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS 1046
Score = 37.1 bits (85), Expect = 0.032
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTC-GYLCNFPDPCKDEPCQ 873
G CE C+ D C N G C+ Q + C C + G LCN P
Sbjct: 1007 GQIERGCEGPSTTCQ--EDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Query: 874 NG 875
G
Sbjct: 1065 GG 1066
Score = 36.7 bits (84), Expect = 0.046
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 470 GAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQV 518
+ S Y+ + G++ V+ + + + DG H+++
Sbjct: 1102 DSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRF 1150
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 106 bits (266), Expect = 1e-24
Identities = 50/363 (13%), Positives = 94/363 (25%), Gaps = 97/363 (26%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+ +T L G I Y G G +I E+ G L +
Sbjct: 29 HLFFQFKTTSLDGLILYNSGDG--------------NDFIVVELVKGYLHYVFDLGNGAN 74
Query: 158 SYNVG-GVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQ-VLYLGGIPE 215
L D H + + R+ + + T+ + + LD++ LY+GG+ +
Sbjct: 75 LIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAK 134
Query: 216 ----TVHHHRSIRSPYQ-------------------------------------PSRSYP 234
++ + +Q S
Sbjct: 135 ETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCS 194
Query: 235 SGGHCTDLWRDFSCSC-VRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNI 293
+ G C W FSC C + F G C T F + R
Sbjct: 195 NQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWP----PNDRPSTRA 250
Query: 294 VDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTP 353
+++ T Q + + S S Y+ + G++ V+ +
Sbjct: 251 DRLAIGFSTVQKEAVLVRVDSS------------SGLGDYLELHIHQGKIGVKFNVGTDD 298
Query: 354 ESYNVGGVKLADGNNHLIQ-----------------------TISSTGILDVQVLYLGGI 390
+ + DG H+++ T + +GG
Sbjct: 299 IAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGK 358
Query: 391 PET 393
+
Sbjct: 359 EQG 361
Score = 71.2 bits (174), Expect = 5e-13
Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 15/129 (11%)
Query: 91 RAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRL 150
R +++ T Q + + S S Y+ + G++ V+
Sbjct: 245 RPSTRADRLAIGFSTVQKEAVLVRVDSS------------SGLGDYLELHIHQGKIGVKF 292
Query: 151 QFNSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNG---TEYFRKTISSTGILDVQV 207
+ + + DG H+++ R+ ++++ E + T
Sbjct: 293 NVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQAT 352
Query: 208 LYLGGIPET 216
+ +GG +
Sbjct: 353 IIIGGKEQG 361
Score = 53.1 bits (127), Expect = 3e-07
Identities = 30/201 (14%), Positives = 54/201 (26%), Gaps = 33/201 (16%)
Query: 471 AGSEETSYIAAEMEAGELFVRLQFNSTPESYNVG-GVKLADGNNHLIQV---GPGFDFQR 526
+ +I E+ G L + L D H + + +
Sbjct: 46 NSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVK 105
Query: 527 IDHPFTK----KHVIVCVLNAHQLSGISDQADLVR------------CTSEAYLNLIIYI 570
ID T + + + + G++ + C + LN +
Sbjct: 106 IDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLP- 164
Query: 571 SWLLSPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECT-P 629
L S A C G C C +C N C+ +SC+C+
Sbjct: 165 ----------DLISDALFCN-GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMT 213
Query: 630 GWEGALCEKEIDECLSNPCMN 650
+ G LC + +
Sbjct: 214 SFSGPLCNDPGTTYIFSKGGG 234
Score = 49.6 bits (118), Expect = 4e-06
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 636 CEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEE-YVGERCE 675
CE C + C N G C + GF C+CS + G C
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 221
Score = 42.7 bits (100), Expect = 4e-04
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDC-LPGWTGKNCTE 903
C+++ C N G C + + CDC + ++G C +
Sbjct: 186 TTCQEDSCSNQGVCLQ---QWDGFSCDCSMTSFSGPLCND 222
Score = 42.3 bits (99), Expect = 7e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 719 CEINIDECASGPCKNSGQCIDDVNAFICNCTNTA 752
CE C C N G C+ + F C+C+ T+
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS 214
Score = 38.1 bits (88), Expect = 0.011
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTC-GYLCNFPDPC 867
G CE C D C N G C+ Q + C C + G LCN P
Sbjct: 175 GQIERGCEGPSTTC--QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 226
Score = 37.7 bits (87), Expect = 0.018
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 469 NGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQV 518
+ S Y+ + G++ V+ + + + DG H+++
Sbjct: 269 VDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRF 318
Score = 36.1 bits (83), Expect = 0.047
Identities = 11/63 (17%), Positives = 14/63 (22%), Gaps = 7/63 (11%)
Query: 681 SCADQPCYFGAVCQDTKISPYFPQGPICDCP-PGYRGSRCEINIDECASGPCKNSGQCID 739
+C + C VC G CDC + G C
Sbjct: 187 TCQEDSCSNQGVCLQQ------WDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Query: 740 DVN 742
N
Sbjct: 241 PPN 243
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 97.1 bits (242), Expect = 5e-24
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 47/145 (32%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID--ECLSNPCMNGGQCEDRL 658
++ C CIDG+ +SC+C GWEG C++E+ C + C + +
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEV 72
Query: 659 AGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSR 718
C C PGY+
Sbjct: 73 GWRR---------------------------------------------CSCAPGYKLGD 87
Query: 719 CEINIDECASGPCKNSGQCIDDVNA 743
+ PC + ++ +
Sbjct: 88 DLLQCHPAVKFPCGRPWKRMEKKRS 112
Score = 88.6 bits (220), Expect = 4e-21
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 580 DPLTSYACKCPAGYSSETCA--VDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
D + S++C C +G+ C V C N C++ V C C PG++
Sbjct: 30 DGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDL 89
Query: 638 KEIDECLSNPCMNGGQCEDR 657
+ + PC + ++
Sbjct: 90 LQCHPAVKFPCGRPWKRMEK 109
Score = 67.8 bits (166), Expect = 6e-14
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 671 GERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE--INIDECAS 728
G++C L C C D CDC G+ G C+ ++ C+
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDG------IGSFSCDCRSGWEGRFCQREVSFLNCSL 59
Query: 729 GPCKNSGQCIDDVNAFICNC 748
+ C+++V C+C
Sbjct: 60 DNGGCTHYCLEEVGWRRCSC 79
Score = 65.9 bits (161), Expect = 3e-13
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 823 IDINECELS------SDMCGNNGECINQPGDYKCACQFDTCGYLCNF---PDPCKDEPCQ 873
+D ++C + + +C +G CI+ G + C C+ G C C +
Sbjct: 4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGG 63
Query: 874 NGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C E +C C PG+ +
Sbjct: 64 CTHYCLE---EVGWRRCSCAPGYKLGDD 88
Score = 63.2 bits (154), Expect = 3e-12
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCAC----QFDTCGYLCNFPDPCKDE 870
G+ G C+ +++ S D G C+ + G +C+C + C+ P
Sbjct: 42 GWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCH---PAVKF 98
Query: 871 PCQNGGTCHE 880
PC E
Sbjct: 99 PCGRPWKRME 108
Score = 32.0 bits (73), Expect = 0.24
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
G C D FSC C + G CQ
Sbjct: 25 HGTCIDGIGSFSCDCRSGWEGRFCQRE 51
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 88.9 bits (221), Expect = 7e-21
Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 25/154 (16%)
Query: 599 AVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRL 658
+ DIDEC + C NG C + + CEC+ + E + C
Sbjct: 1 SADIDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID---- 55
Query: 659 AGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR--- 715
N + + +C C+ +G+ C C GY
Sbjct: 56 GRCEININGATLKSQC-------CSSLGAAWGSPCT--------LCQVDPICGKGYSRIK 100
Query: 716 GSRCEINIDECASGPCK-NSGQCIDDVNAFICNC 748
G++CE +IDEC P +G C++ +F C C
Sbjct: 101 GTQCE-DIDECEVFPGVCKNGLCVNTRGSFKCQC 133
Score = 65.1 bits (159), Expect = 2e-12
Identities = 42/213 (19%), Positives = 62/213 (29%), Gaps = 83/213 (38%)
Query: 640 IDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKIS 699
IDEC S+PC+NG C++ F+C CS E + ++ C + +
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSSESTLDPTKT----ICIE-------TIK----- 46
Query: 700 PYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGC 759
C RCE QC + + T +
Sbjct: 47 --------GTCWQTVIDGRCE-----ININGATLKSQCCSSLG---AAWGSPCTLCQVDP 90
Query: 760 LGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGE 819
C + +S G
Sbjct: 91 -------------------------ICGKGYS-----------------------RIKGT 102
Query: 820 MCEIDINECELSSDMCGNNGECINQPGDYKCAC 852
CE DI+ECE+ +C NG C+N G +KC C
Sbjct: 103 QCE-DIDECEVFPGVC-KNGLCVNTRGSFKCQC 133
Score = 55.8 bits (135), Expect = 3e-09
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 15/95 (15%)
Query: 583 TSYACKCPAGYSS--ETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA---LCE 637
C+ ++ C + C + C G+ CE
Sbjct: 54 IDGRCEININGATLKSQCCSSLGAAWGSPCTLC--------QVDPICGKGYSRIKGTQCE 105
Query: 638 KEIDECLSNPCM-NGGQCEDRLAGFVCNCSEEYVG 671
+IDEC P + G C + F C C
Sbjct: 106 -DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 53.9 bits (130), Expect = 1e-08
Identities = 22/103 (21%), Positives = 29/103 (28%), Gaps = 27/103 (26%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCAC----QFDTCGYLCNFPDPC------------ 867
DI+ECE S NG C N PG + C C D +C
Sbjct: 3 DIDECESS---PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 868 --------KDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCT 902
K + C + G C G++ T
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGT 102
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 95.2 bits (236), Expect = 9e-21
Identities = 45/337 (13%), Positives = 67/337 (19%), Gaps = 87/337 (25%)
Query: 576 PHDSDPLTSYACKCPAGYSSETCAVDI-DECVTHNCQNGARCIDG--VARYSCECTPGWE 632
+ S + + P D V G C
Sbjct: 135 KNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKW 194
Query: 633 GALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESL----RQISCADQPCY 688
G C L CMN G C + C C ++G CE + C
Sbjct: 195 GPECN-----HLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHTFGRTCKERCS 247
Query: 689 FGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGP-CKNSGQCIDDVNAFICN 747
C+ P C C G++G +C GP CK C+
Sbjct: 248 GQEGCKSY--VFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLR-----------CS 294
Query: 748 CTNTAT-GASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGP 806
C N GCL C
Sbjct: 295 CNNGEMCDRFQGCL-------------------------CSP------------------ 311
Query: 807 GVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFD--TCGYLCNFP 864
G+ G CE + ++ + G + C+
Sbjct: 312 --------GWQGLQCEREGIPR-MTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMT 362
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D + + +
Sbjct: 363 LVKPDGTVLHPKDFNHTD----HFSVAIFTIHRILPP 395
Score = 77.4 bits (190), Expect = 5e-15
Identities = 45/318 (14%), Positives = 62/318 (19%), Gaps = 88/318 (27%)
Query: 607 THNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCN-- 664
I V R+ + + D + + GG +
Sbjct: 130 DAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQ-DAGVYSARYIGGNLFTSAFTRLIVRR 188
Query: 665 CSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINID 724
C + G C C VC + C CPPG+ G CE +
Sbjct: 189 CEAQKWGPECN------HLCTACMNNGVCHEDTGE--------CICPPGFMGRTCEKACE 234
Query: 725 ECASGP-CKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDT 783
G CK + C GC
Sbjct: 235 LHTFGRTCKERCSGQEG-----CKSYVFCLPDPYGC------------------------ 265
Query: 784 LSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSD-----MCGNN 838
SC G+ G C + D C N
Sbjct: 266 -SCAT--------------------------GWKGLQCNEACHPGFYGPDCKLRCSCNNG 298
Query: 839 GECINQPGDYKCACQFDTCGYLCN--FPDPCKDEPCQNGGTCHEDCRHQADYKCDC-LPG 895
C C C G C + + + C G
Sbjct: 299 EMCDR---FQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNS---GKFNPICKASG 352
Query: 896 WTGKNCTEVPEYLPSRVV 913
W E+ P V
Sbjct: 353 WPLPTNEEMTLVKPDGTV 370
Score = 75.5 bits (185), Expect = 2e-14
Identities = 27/153 (17%), Positives = 38/153 (24%), Gaps = 20/153 (13%)
Query: 583 TSYACKCPAGYSSETCAVDIDECVTH-------NCQNGARCIDGVARYSCECTPGWEGAL 635
Y C C G+ C +C NG C C C+PGW+G
Sbjct: 261 DPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF---QGCLCSPGWQGLQ 317
Query: 636 CEKE-IDECLSNPCMNGGQCEDRLAGFVCNCSEE-YVGERCESLRQISCADQPCYFGAVC 693
CE+E I E F C + E + + D
Sbjct: 318 CEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEM-TLVKPDGTVLHPKDF 376
Query: 694 QDTKISPYFPQGPICDCPPGYRGSRCEINIDEC 726
T +R + + C
Sbjct: 377 NHT-------DHFSVAIFTIHRILPPDSGVWVC 402
Score = 33.1 bits (75), Expect = 0.50
Identities = 5/63 (7%), Positives = 13/63 (20%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDEC 643
+ C A ++ + + +S + + C
Sbjct: 343 KFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVC 402
Query: 644 LSN 646
N
Sbjct: 403 SVN 405
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 86.6 bits (215), Expect = 8e-20
Identities = 32/156 (20%), Positives = 51/156 (32%), Gaps = 17/156 (10%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG 660
D++EC+ C++ Y C+C P +E + S C +
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGD 61
Query: 661 FVCNCSEEYVG---ERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGS 717
C+ C SL PC + +C G+R +
Sbjct: 62 TACSNEIGVGVSKASCCCSL--GKAWGTPCEMCPAVNTS------EYKILCPGGEGFRPN 113
Query: 718 RCEIN---IDECASGP--CKNSGQCIDDVNAFICNC 748
+ IDEC P C+ G+CI+ +F C C
Sbjct: 114 PITVILEDIDECQELPGLCQG-GKCINTFGSFQCRC 148
Score = 57.8 bits (140), Expect = 7e-10
Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 708 CDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGD 767
CDCPP + + + + SG C + D C+ + C
Sbjct: 26 CDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC------- 78
Query: 768 LLLPYFTWEQLGYTDTLSCPECFSLDSGPGG------PGLADSGPGVQTTPILGYTGEMC 821
LG C C ++++ G + V
Sbjct: 79 --------CSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVI-----------L 119
Query: 822 EIDINECELSSDMCGNNGECINQPGDYKCACQ 853
E DI+EC+ +C G+CIN G ++C C
Sbjct: 120 E-DIDECQELPGLCQ-GGKCINTFGSFQCRCP 149
Score = 55.1 bits (133), Expect = 6e-09
Identities = 10/94 (10%), Positives = 17/94 (18%), Gaps = 14/94 (14%)
Query: 815 GYTGEMCE---IDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKD-- 869
+ +D C + GD C+ G + C
Sbjct: 31 DFELNPTRVGCVDTRSGN-----CYLDIRPRGDNGDTACSN---EIGVGVSKASCCCSLG 82
Query: 870 EPCQNGGTCHEDCRHQA-DYKCDCLPGWTGKNCT 902
+ C G+ T
Sbjct: 83 KAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPIT 116
Score = 51.6 bits (124), Expect = 1e-07
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCAC----QFDTCGYLCNFPDPCKDEPCQNGGTCH 879
D+NEC + +G C+N PG Y C C + + C C
Sbjct: 2 DVNECLDPTTCI--SGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG---NCYLDIRPR 56
Query: 880 EDCRHQADYKCDCLPGWTG 898
D D C G
Sbjct: 57 GD---NGDTACSNEIGVGV 72
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 93.2 bits (231), Expect = 1e-19
Identities = 53/342 (15%), Positives = 98/342 (28%), Gaps = 76/342 (22%)
Query: 90 RRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVR 149
R NI + RT + YL + +++ E+ G + V
Sbjct: 220 IRWYPNISTVMFKFRTFSSSALLMYLATRDLK-------------DFMSVELSDGHVKVS 266
Query: 150 LQFNSTPESYNVGGVKLADGNNHLIQVVR---NVTLVQVKLNGTEYFRKTISSTG----- 201
S S V DG + R + V ++ + SS+G
Sbjct: 267 YDLGSGMTS-VVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGL 325
Query: 202 -ILDVQVLYLGGIPETVHHHRSIRSPYQPSRSYPSGGHCTDL---WRDFSCSCVRPFLGH 257
+ +Y GG+P ++R+ G D+ ++ ++G
Sbjct: 326 DLKADDKIYFGGLP-------TLRNLRPEVNVKKYSGCLKDIEISRTPYNILSSPDYVGV 378
Query: 258 TCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGD 317
T + + +A ++ +I++ TR G I G G
Sbjct: 379 TKGCSLENVYTVSFPKPGFV------ELAAVSIDVGTEINLSFSTRNESGIILLGSGGG- 431
Query: 318 RSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNV---GGVKLADGNNHLI--- 371
+Y A + G L V L + V + DG H +
Sbjct: 432 -------------QAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVE 478
Query: 372 -----------------QTISSTGILDVQVLYLGGIPETVHH 396
Q ++ ++V+ L++GG P
Sbjct: 479 RTRGIFTVQIDEDRRHMQNLTEEQPIEVKKLFVGGAPPEFQP 520
Score = 90.9 bits (225), Expect = 6e-19
Identities = 66/487 (13%), Positives = 131/487 (26%), Gaps = 109/487 (22%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+I + ++T +FYLG + ++A EM G++ S
Sbjct: 34 NIVVHVKTAVADNLLFYLGSAKF-------------IDFLAIEMRKGKVSFLWDVGSGVG 80
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISST----------GILDVQ- 206
+ + D + I+ R + + + + ++ + ILDV
Sbjct: 81 RVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDA 140
Query: 207 --VLYLGGIPETVHHHRSIRSPY----QPSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQ 260
+L++GG+ + ++R + + +R+ C + +
Sbjct: 141 NAMLFVGGLTGKIKKADAVRVITFTGCMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVE 200
Query: 261 YNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSS 320
+ F V+ R NI + RT + YL +
Sbjct: 201 DSEGTIQF----DGEGYALVS---RPIRWYPNISTVMFKFRTFSSSALLMYLATRDLK-- 251
Query: 321 PSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQ-------- 372
+++ E+ G + V S S V DG
Sbjct: 252 -----------DFMSVELSDGHVKVSYDLGSGMTS-VVSNQNHNDGKWKAFTLSRIQKQA 299
Query: 373 ---------------TISSTG------ILDVQVLYLGGIPE---------TVHHHRSIRS 402
SS+G + +Y GG+P + ++
Sbjct: 300 NISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKD 359
Query: 403 PYQPSRSY----PRWATYDEMENYTTARRRYSRQTAGEKQFSPLPNFKGIIHDVQIYFIS 458
Y S G + + + G ++ + F
Sbjct: 360 IEISRTPYNILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAVSIDVGT--EINLSF-- 415
Query: 459 GSGDRSSPSSNG----AGSEETSYIAAEMEAGELFVRLQFNSTPESYNV---GGVKLADG 511
S+ + +G +Y A + G L V L + V + DG
Sbjct: 416 -----STRNESGIILLGSGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHDG 470
Query: 512 NNHLIQV 518
H + V
Sbjct: 471 REHSVHV 477
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 90.8 bits (225), Expect = 2e-19
Identities = 58/349 (16%), Positives = 103/349 (29%), Gaps = 74/349 (21%)
Query: 90 RRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVR 149
+ VR + + + IRT G I+Y+ + Y +++ G L
Sbjct: 38 QSDVRKRLQVQLSIRTFASSGLIYYVAHQN-------------QMDYATLQLQEGRLHFM 84
Query: 150 LQFNSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTG-ILDVQ-V 207
+ L+DG H ++ + ++G E T+ LDV+
Sbjct: 85 FDLGKGRTKVSHPA-LLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERK 143
Query: 208 LYLGGIPETVHHHRSIRSPYQPS-----RSYPSGGHCTDLWRDFSCSCVRPFLGHTCQYN 262
LYLGG+P H+ S G D R S S V +
Sbjct: 144 LYLGGLPS--HYRARNIGTITHSIPACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQEGT 201
Query: 263 FTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPS 322
F + VR + I++ RT G + + +
Sbjct: 202 FFEGSGYAALVKEGY-----------KVRLDLQITLEFRTTSKNGVLLGISSAK------ 244
Query: 323 SNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNV---GGVKLADGNNHLIQTISSTGI 379
I E+ G++ + + + L DG H +Q S
Sbjct: 245 --------VDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHR 296
Query: 380 LDVQV----------------------LYLGGIPETV-HHHRSIRSPYQ 405
+ + V +Y+GG P + + S R+ ++
Sbjct: 297 IVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPAHIKQNSLSSRASFR 345
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 91.7 bits (227), Expect = 4e-19
Identities = 50/337 (14%), Positives = 71/337 (21%), Gaps = 101/337 (29%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKE 639
L C C G+ C C G+ G CE +
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQ 462
Query: 640 IDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKIS 699
S G C +C+ + V +C S +G C+ I+
Sbjct: 463 TQGRSSQELE--GSCRKDNNSIICSGLGDCVCGQCLC--HTSDVPGKLIYGQYCECDTIN 518
Query: 700 PYFPQGPICD-------------CPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFIC 746
G +C C PG+ GS C+ C N +
Sbjct: 519 CERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTE---GCLNPRR---------V 566
Query: 747 NCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGP 806
C+ C C
Sbjct: 567 ECSGRGRCRCNVC-------------------------ECHS------------------ 583
Query: 807 GVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF--P 864
GY +C+ EC CG C + G C+ P
Sbjct: 584 --------GYQLPLCQ----ECPGCPSPCGKYISCAEC-----LKFEKGPFGKNCSAACP 626
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
G TC E C +T +
Sbjct: 627 GLQLSNNPVKGRTCKER------DSEGCWVAYTLEQQ 657
Score = 89.0 bits (220), Expect = 3e-18
Identities = 57/306 (18%), Positives = 79/306 (25%), Gaps = 50/306 (16%)
Query: 606 VTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNC 665
C NG + + +C ++ + L
Sbjct: 360 YDSFCSNGVTHRN---QPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 666 SEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDE 725
+ C R S C+ + IC C GY G CE
Sbjct: 417 VQVLPQCECRC-RDQSRDRSLCHGKGFLECG----------ICRCDTGYIGKNCECQTQG 465
Query: 726 CASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLS 785
+S G C D N+ IC+ C G L+ + DT++
Sbjct: 466 RSSQEL--EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCE-----CDTIN 518
Query: 786 CPECFSLDSGPGGPGLADSG-----PGVQTTPILGYTGEMCEIDINECELSSDM---CGN 837
C G G GL G P G+ G C+ + + C
Sbjct: 519 CERYNGQVCGGPGRGLCFCGKCRCHP--------GFEGSACQCERTTEGCLNPRRVECSG 570
Query: 838 NGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWT 897
G C C C LC C PC +C E C G
Sbjct: 571 RGRCR----CNVCECHSGYQLPLCQECPGCPS-PCGKYISCAE-C-------LKFEKGPF 617
Query: 898 GKNCTE 903
GKNC+
Sbjct: 618 GKNCSA 623
Score = 83.2 bits (205), Expect = 2e-16
Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 27/166 (16%)
Query: 587 CKCPAGYSSETCAVDIDECVTHN-----CQNGARCIDGVARYSCECTPGWEGALCEKEID 641
C+C G+ C + N C RC V CEC G++ LC++
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNV----CECHSGYQLPLCQE--C 593
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPY 701
+PC C + + G+ C + G C++
Sbjct: 594 PGCPSPCGKYISCAEC-----LKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERD---- 644
Query: 702 FPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICN 747
C Y + + + S +C+ + N
Sbjct: 645 -----SEGCWVAYTLEQQDGM--DRYLIYVDESRECVAGPDGCGEN 683
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 90.5 bits (224), Expect = 1e-18
Identities = 58/330 (17%), Positives = 86/330 (26%), Gaps = 56/330 (16%)
Query: 601 DIDECVTHNCQNGARCIDGVA-RYSC-ECTPGWE--GALCEKEIDECLSN-----PCMNG 651
D D C+++ C GA+C +SC C G+ G CE ++DEC
Sbjct: 2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKV 60
Query: 652 GQCEDRLAGFVC-NCSEEYVG--ERCESLRQISCADQPCYFGAVCQD-----------TK 697
+C + GF C C Y G L Q C C+D
Sbjct: 61 PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIY 120
Query: 698 ISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASM 757
+ + C+C GY G D G + C +
Sbjct: 121 LGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNC------- 173
Query: 758 GCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYT 817
P+ D + D D + L +
Sbjct: 174 -------------PHLPNSGQEDFDKDGIGDACDDDDDN------DGVTDEKDNCQLLFN 214
Query: 818 GEMCEIDINECELSSDMCGN--NGECINQPGD-YKCACQFDTCGY-LCNFPDPCKDEPCQ 873
+ D +E D C N I+ + AC D G + N D C
Sbjct: 215 PRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNT 274
Query: 874 NGGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
+ D D+ +C
Sbjct: 275 DQRDTDGD--GVGDHCDNCPLVHNPDQTDV 302
Score = 52.7 bits (126), Expect = 5e-07
Identities = 35/192 (18%), Positives = 49/192 (25%), Gaps = 29/192 (15%)
Query: 576 PHDSDPLTSYACKCPAGYSS--ETCAVDID----ECVTHNCQNGARCIDGVARYSCECTP 629
H SDP Y C+C GY+ C D D + C A
Sbjct: 122 GHFSDP--MYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNS 179
Query: 630 GWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCN-----CSEEYVGERCESLRQISCAD 684
G E + D C + +G E + N ++ VG+RC+ +C
Sbjct: 180 GQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD-----NCPY 234
Query: 685 QP-CYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSG-QCIDDVN 742
+ G C G D C + D V
Sbjct: 235 VHNPAQIDTDNN---------GEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVG 285
Query: 743 AFICNCTNTATG 754
NC
Sbjct: 286 DHCDNCPLVHNP 297
Score = 51.6 bits (123), Expect = 1e-06
Identities = 36/198 (18%), Positives = 49/198 (24%), Gaps = 35/198 (17%)
Query: 584 SYACK-CPAGYS--------------SETCAVDIDECV--THNCQNGARCI----DGVAR 622
+ C CP Y + + C THNC A CI
Sbjct: 69 GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPM 128
Query: 623 YSCECTPGWEG--ALCEKEID----ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCES 676
Y CEC G+ G +C ++ D L+ C + +
Sbjct: 129 YKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDG 188
Query: 677 LRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQ 736
+ D V + D G RC D C N Q
Sbjct: 189 IGDACDDDDDNDG--VTDEKDNCQLLFNPRQADYDKDEVGDRC----DNCPYVH--NPAQ 240
Query: 737 CIDDVNAFICNCTNTATG 754
D N C+ G
Sbjct: 241 IDTDNNGEGDACSVDIDG 258
Score = 38.5 bits (89), Expect = 0.011
Identities = 42/259 (16%), Positives = 64/259 (24%), Gaps = 27/259 (10%)
Query: 575 SPHDSDPLTSYACKCPAGYSSETCAVDIDEC--VTHNC---QNGARCIDGVARYSCECTP 629
D+D +T C ++ D DE NC N A+ C+
Sbjct: 195 DDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSV 254
Query: 630 GWEGALCEKEIDECLSNPCMNGG-QCEDRLAGFVCNCSEEYVGE---RCESLRQISCADQ 685
+G E D C + D + NC + + L C +
Sbjct: 255 DIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNN 314
Query: 686 PCYFG-AVCQDTKISPYFPQGPICD---------CPPGYRGSRCEINIDECASGPCKNSG 735
+ PY D C P + D C N
Sbjct: 315 EDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVF--NPD 372
Query: 736 QCIDDVNAFICNCTNTATGASMG-----CLGEVRLGDLLLPYFTWEQLGYT-DTLSCPEC 789
Q D + C + ++ C + + F L T P
Sbjct: 373 QEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPKGTTQIDPNW 432
Query: 790 FSLDSGPGGPGLADSGPGV 808
G A+S PG+
Sbjct: 433 VIRHQGKELVQTANSDPGI 451
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 88.5 bits (219), Expect = 1e-18
Identities = 60/388 (15%), Positives = 113/388 (29%), Gaps = 76/388 (19%)
Query: 42 PTSLSQSQTSFPTTTNFTFVTSPDFTAATFGHE----NTTNSLVTVAVGGVARRAVRNIV 97
S+ FP T + A + NS + +A V+N +
Sbjct: 3 LASVPTPAFPFPVPTMVHGPCVAESEPALLTGSKQFGLSRNSHIAIAF---DDTKVKNRL 59
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
I + +RT G +FY+ + ++ G + S
Sbjct: 60 TIELEVRTEAESGLLFYMARIN-------------HADFATVQLRNGFPYFSYDLGSGDT 106
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDV-QVLYLGGIPET 216
S + K+ DG H I++VR + ++ + ILDV +LY+GG+P
Sbjct: 107 STMIP-TKINDGQWHKIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYVGGLPIN 165
Query: 217 VHHHRSIRSPYQPS---RSYPSGGHCTDLWRDFSCSCVRPFLGHTCQYNFTAATFGHENT 273
R Y R+ DL + S V G + F
Sbjct: 166 YTTRRIGPVTYSLDGCVRNLHMEQAPVDLDQPTSSFHV----GTCFANAESGTYFDGTGF 221
Query: 274 TNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSY 333
++ VG + + RT + G + + S++
Sbjct: 222 AKAVGGFKVG--------LDLLVEFEFRTTRPTGVLLGVS--------------SQKMDG 259
Query: 334 IAAEMEAGELFVRLQFNSTPESYNV---GGVKLADGNNHLIQTISSTGILDVQV------ 384
+ EM +L + + + + +G H + L++ V
Sbjct: 260 MGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVD 319
Query: 385 ----------------LYLGGIPETVHH 396
+++GG P ++
Sbjct: 320 AQSPNSASTSADTNDPVFVGGFPGGLNQ 347
Score = 56.9 bits (137), Expect = 2e-08
Identities = 50/330 (15%), Positives = 88/330 (26%), Gaps = 71/330 (21%)
Query: 229 PSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARR 288
S P+ C T F + NS + +A
Sbjct: 4 ASVPTPAFPFPVPTMVHGPCVAESEPALLTGSKQFG-------LSRNSHIAIAF---DDT 53
Query: 289 AVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQ 348
V+N + I + +RT G +FY+ + ++ G +
Sbjct: 54 KVKNRLTIELEVRTEAESGLLFYMARIN-------------HADFATVQLRNGFPYFSYD 100
Query: 349 FNSTPESYNVGGVKLADGNNHLI--------------------QTISSTGILDV-QVLYL 387
S S + K+ DG H I + ILDV +LY+
Sbjct: 101 LGSGDTSTMI-PTKINDGQWHKIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYV 159
Query: 388 GGIPETVHHHRS----------IRSPYQPSRSYPRWATYDEMENYTTARRRYSRQTAGEK 437
GG+P R +R+ + T S
Sbjct: 160 GGLPINYTTRRIGPVTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESGTYFDGT 219
Query: 438 QF-SPLPNFKGIIH-DVQIYFISGSGDRSSPSSNG----AGSEETSYIAAEMEAGELFVR 491
F + FK + V+ F R++ G S++ + EM +L
Sbjct: 220 GFAKAVGGFKVGLDLLVEFEF------RTT-RPTGVLLGVSSQKMDGMGIEMIDEKLMFH 272
Query: 492 LQFNSTPESYNV---GGVKLADGNNHLIQV 518
+ + + + +G H +
Sbjct: 273 VDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 302
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 88.0 bits (217), Expect = 2e-18
Identities = 29/149 (19%), Positives = 38/149 (25%), Gaps = 21/149 (14%)
Query: 601 DIDECVTHNCQNGA-RCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLA 659
DI C A C+ ++ +CEC G C K P + G
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW-SPGSYLPIPK 348
Query: 660 GFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRC 719
G C C G C + C CP Y G C
Sbjct: 349 GAANACIPSISSIGTNVCDNELL---HCQNGGTCHN---------NVRCLCPAAYTGILC 396
Query: 720 EINIDECASGPCKNSGQCIDDVNAFICNC 748
E + C+ +G C D
Sbjct: 397 E----KLR---CEEAGSCGSDSGQGAPPH 418
Score = 67.2 bits (163), Expect = 1e-11
Identities = 24/135 (17%), Positives = 31/135 (22%), Gaps = 22/135 (16%)
Query: 585 YACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECL 644
C+C + C G+ + + C P +E
Sbjct: 313 LTCECEHNTTGPDCGKCKKNYQGRPWSPGS-YLPIPKGAANACIPSISSIGTNVCDNEL- 370
Query: 645 SNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQ 704
C NGG C + C C Y G CE LR C C
Sbjct: 371 -LHCQNGGTCHN---NVRCLCPAAYTGILCEKLR--------CEEAGSCGSD-------- 410
Query: 705 GPICDCPPGYRGSRC 719
P G
Sbjct: 411 SGQGAPPHGTHHHHH 425
Score = 59.1 bits (142), Expect = 3e-09
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN 874
TG C + G + P AC N + CQN
Sbjct: 320 NTTGPDCGKCKKNY---QGRPWSPGSYLPIPKGAANACIPSISSIGTNV-CDNELLHCQN 375
Query: 875 GGTCHEDCRHQADYKCDCLPGWTGKNC 901
GGTCH + +C C +TG C
Sbjct: 376 GGTCHNN------VRCLCPAAYTGILC 396
Score = 53.7 bits (128), Expect = 2e-07
Identities = 34/257 (13%), Positives = 56/257 (21%), Gaps = 46/257 (17%)
Query: 646 NPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQG 705
+ + F + + +F ++
Sbjct: 214 YTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGE 273
Query: 706 PICDCPPGYRGSRCEINIDECASGPCKNSG-QCIDDVNAFICNCTNTATGASMGCLGEVR 764
D R +I C C+ D + C C + TG C
Sbjct: 274 IFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPD--C----- 326
Query: 765 LGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEID 824
+ PG G P + +
Sbjct: 327 -----------GKC-------KKNYQGRPWSPGSYLPIPKGAANACIP--SISSIGTNVC 366
Query: 825 INECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRH 884
NE C N G C N + +C C G LC + + C+ G+C D
Sbjct: 367 DNELLH----CQNGGTCHN---NVRCLCPAAYTGILC---EKLR---CEEAGSCGSDSG- 412
Query: 885 QADYKCDCLPGWTGKNC 901
+ G +
Sbjct: 413 ----QGAPPHGTHHHHH 425
Score = 43.7 bits (102), Expect = 2e-04
Identities = 13/82 (15%), Positives = 20/82 (24%), Gaps = 8/82 (9%)
Query: 824 DINECELSSDMCGNNG-ECINQPGDYKCACQFDTCGYLCNF-PDPCKDEPCQNGGTCHED 881
DI C + C+ C C+ +T G C + P G
Sbjct: 290 DIKVRGRCK--CNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIP 347
Query: 882 CRHQADYKCDCLPGWTGKNCTE 903
C+P +
Sbjct: 348 K----GAANACIPSISSIGTNV 365
Score = 29.4 bits (65), Expect = 6.0
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPG 630
+ C CPA Y+ C ++ C+ C + +
Sbjct: 382 NVRCLCPAAYTGILC----EKL---RCEEAGSCGSDSGQGAPPHGTH 421
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 85.9 bits (212), Expect = 2e-17
Identities = 52/341 (15%), Positives = 75/341 (21%), Gaps = 122/341 (35%)
Query: 587 CKCPAGYSSETCAVDIDECV----THNCQNGARCIDGVARYS---CECTPGWEGALCEKE 639
P G+ +C N RC +G + C C PGW G+ CE
Sbjct: 415 TIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECS 474
Query: 640 IDECLSN------------PCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPC 687
++ + C G+C C C G+ +
Sbjct: 475 EEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHSSDFGKITGKYCECDDFSCVR 530
Query: 688 YFGAVCQDTKISPYFPQG----PICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNA 743
Y G +C G C C + G C + C +S +
Sbjct: 531 YKGEMCSG--------HGQCSCGDCLCDSDWTGYYCNC---TTRTDTCMSSNGLL----- 574
Query: 744 FICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLAD 803
C+ C C + G
Sbjct: 575 --CSGRGKCE--------------------------------CGSCVCIQPG-------- 592
Query: 804 SGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECIN-QPGDYKCACQFDTCGYLCN 862
G+ CE +C D C EC+ + D +TC C
Sbjct: 593 ------------SYGDTCE----KCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCR 636
Query: 863 FPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
K G NCT
Sbjct: 637 DEIES--------------------VKELKDTGKDAVNCTY 657
Score = 76.7 bits (188), Expect = 2e-14
Identities = 54/303 (17%), Positives = 80/303 (26%), Gaps = 71/303 (23%)
Query: 606 VTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNC 665
C N SC + E + P + GF +
Sbjct: 370 FNATCLNNEVIPGLK---SCMGLKIGDTVSFSIEA-KVRGCPQEKEKSFTIKPVGF-KDS 424
Query: 666 SEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDE 725
V C+ +C Q C + + + +C C PG+ GS+CE + ++
Sbjct: 425 LIVQVTFDCDC----ACQAQAEPNSHRCNNGNGTF---ECGVCRCGPGWLGSQCECSEED 477
Query: 726 CASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLS 785
+C +C+ CL
Sbjct: 478 Y---RPSQQDECSPREGQPVCSQRGE-------CL--------------------CGQCV 507
Query: 786 CPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECE-LSSDMCGNNGECINQ 844
C G TG+ CE D C +MC +G+C
Sbjct: 508 CHS------SDFGK----------------ITGKYCECDDFSCVRYKGEMCSGHGQCSC- 544
Query: 845 PGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCL-PGWTGKNCTE 903
C C D GY CN NG C + + C C+ PG G C +
Sbjct: 545 ---GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCE-CGSCVCIQPGSYGDTCEK 600
Query: 904 VPE 906
P
Sbjct: 601 CPT 603
Score = 43.2 bits (101), Expect = 4e-04
Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 20/93 (21%)
Query: 583 TSYACKC-PAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID 641
+C C G +TC + C C EC GAL ++
Sbjct: 582 ECGSCVCIQPGSYGDTC--EKCPTCPDACTFKKEC--------VECKKFDRGALHDE--- 628
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERC 674
+ C + + C
Sbjct: 629 NTCNRYCRDEIESVK------ELKDTGKDAVNC 655
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 72.9 bits (179), Expect = 7e-16
Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDEC 643
SY C + + R C C G + C
Sbjct: 1 SYQVICRDEKTQMIY--QQHQSWLRPVLRSNRV------EYCWCNSGRAQ-CHSVPVKSC 51
Query: 644 LSNPCMNGGQCEDRLA--GFVCNCSEEYVGERCE 675
C NGG C+ L FVC C E + G+ CE
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 66.7 bits (163), Expect = 1e-13
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 623 YSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISC 682
Y C + + + P + + E C C+ C S+ SC
Sbjct: 2 YQVICRDEKTQMIYQ--QHQSWLRPVLRSNRVE------YCWCNSGRAQ--CHSVPVKSC 51
Query: 683 ADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDE 725
++ C+ G CQ F +C CP G+ G CEI+
Sbjct: 52 SEPRCFNGGTCQQALYFSDF----VCQCPEGFAGKSCEIDTRA 90
Score = 62.5 bits (152), Expect = 3e-12
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 841 CINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKN 900
+ C C C + C NGGTC + +D+ C C G+ GK+
Sbjct: 25 VLRSNRVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQ-QALYFSDFVCQCPEGFAGKS 83
Query: 901 C 901
C
Sbjct: 84 C 84
Score = 57.5 bits (139), Expect = 2e-10
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 679 QISCADQPCYFGAVCQDTKISPYFPQGPI--CDCPPGYRGSRCEINIDECASGPCKNSGQ 736
Q+ C D+ + + P + C C G + + C+ C N G
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGGT 61
Query: 737 CIDDV--NAFICNC 748
C + + F+C C
Sbjct: 62 CQQALYFSDFVCQC 75
Score = 32.5 bits (74), Expect = 0.12
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 867 CKDEPCQNGGTCHE-----DCRHQADYKCDCLPGWTGKNCTEVPE 906
C+DE Q H+ R C C G + V
Sbjct: 6 CRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKS 50
Score = 30.5 bits (69), Expect = 0.60
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 577 HDSDPLTSYACKCPAGYSSETCAVDIDE 604
+ + + C+CP G++ ++C +D
Sbjct: 63 QQALYFSDFVCQCPEGFAGKSCEIDTRA 90
Score = 28.6 bits (64), Expect = 2.3
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 236 GGHCTDL--WRDFSCSCVRPFLGHTCQYN 262
GG C + DF C C F G +C+ +
Sbjct: 59 GGTCQQALYFSDFVCQCPEGFAGKSCEID 87
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 74.1 bits (181), Expect = 6e-14
Identities = 52/349 (14%), Positives = 102/349 (29%), Gaps = 68/349 (19%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
RT G + + G +++++I + AG L ++L++N
Sbjct: 64 VAEFDFRTFDPEGILLF-------------AGGHQDSTWIVLALRAGRLELQLRYNGVGR 110
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISS-----TGILDVQVLYLGG 212
+ G + G I V + +K+N + ++ L L +GG
Sbjct: 111 VTSS-GPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGG 169
Query: 213 IPETVHHHRSIRSPYQPS-----RS-YPSGGHCTDLWRDFSCSCVRPFLGHTCQYNFTAA 266
IP H + + P P RS G T + + T + +F
Sbjct: 170 IPF---HEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPG 226
Query: 267 TFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGA 326
+ + + + T G V++ IR G +F L R+ P S
Sbjct: 227 SGFAFYSLDYMRTPLDVG---TESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVAL 283
Query: 327 GSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISSTGILDVQV-- 384
+ + + +K+ DG H++ G ++V
Sbjct: 284 VD-------YHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDG 336
Query: 385 ----------------------------LYLGGIPETVHHHRSIRSPYQ 405
+ GG+P+ + + Y+
Sbjct: 337 TRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTAFYR 385
Score = 45.9 bits (108), Expect = 4e-05
Identities = 26/199 (13%), Positives = 60/199 (30%), Gaps = 20/199 (10%)
Query: 40 EQPTSLSQSQTSFPTTTNFTFVTSPDFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDI 99
+ T++ ++ F+ F + + + + T G V++
Sbjct: 197 GEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTPLDVG---TESTWEVEV 253
Query: 100 SMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESY 159
IR G +F L R+ P S + +
Sbjct: 254 VAHIRPAADTGVLFALWAPDLRAVPLSVALVD-------YHSTKKLKKQLVVLAVEHTAL 306
Query: 160 NVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEY----------FRKTISSTGILDVQVLY 209
+ +K+ DG H++ V ++++GT R + + + +
Sbjct: 307 ALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTF 366
Query: 210 LGGIPETVHHHRSIRSPYQ 228
GG+P+ + + Y+
Sbjct: 367 AGGLPDVPVTSAPVTAFYR 385
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 72.4 bits (178), Expect = 9e-14
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 600 VDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQ-CEDRL 658
C++ C + C D + Y+C C+PG+EG+ CE +EC C
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ 62
Query: 659 AGFVCNCSEEYVGERCESLRQISCADQPC 687
+ C+C++ Y + + C
Sbjct: 63 ESYTCSCAQGYRLGEDHK-QCVPHDQCAC 90
Score = 69.0 bits (169), Expect = 1e-12
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISP 700
C+S PC++ G C+D + G+ C CS Y G CE + ++ C +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ--- 62
Query: 701 YFPQGPICDCPPGYRGSRCEINIDECASGPC 731
+ C C GYR C
Sbjct: 63 ---ESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 56.3 bits (136), Expect = 2e-08
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVP 905
PC +PC + G+C + Y C C PG+ G NC
Sbjct: 6 SPCISQPCLHNGSCQDSIW---GYTCTCSPGYEGSNCELAK 43
Score = 55.5 bits (134), Expect = 3e-08
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 580 DPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGAR-CIDGVARYSCECTPGWEGALCEK 638
D + Y C C GY C + +EC C+ G Y+C C G+ K
Sbjct: 21 DSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHK 80
Query: 639 EIDECLSNPC---MNGGQ 653
+ C + +
Sbjct: 81 QCVPHDQCACGVLTSEKR 98
Score = 53.9 bits (130), Expect = 9e-08
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 823 IDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC-NFPDPCKDEPCQNGGTCHED 881
+ C S C +NG C + Y C C G C + C E C
Sbjct: 3 KGGSPCI--SQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT---DGCQHF 57
Query: 882 CRHQAD-YKCDCLPGWTGKNCTE 903
C + Y C C G+ +
Sbjct: 58 CLPGQESYTCSCAQGYRLGEDHK 80
Score = 43.2 bits (102), Expect = 3e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 721 INIDECASGPCKNSGQCIDDVNAFICNCTN 750
C S PC ++G C D + + C C+
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSP 32
Score = 35.5 bits (82), Expect = 0.074
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCAC----QFDTCGYLCNFPDPCKDE 870
GY G CE+ NEC + C+ Y C+C + C D C
Sbjct: 33 GYEGSNCELAKNECHPERTDGCQHF-CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Query: 871 PCQNGGT 877
+
Sbjct: 92 VLTSEKR 98
Score = 30.4 bits (69), Expect = 2.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQYN 262
G C D ++C+C + G C+
Sbjct: 16 NGSCQDSIWGYTCTCSPGYEGSNCELA 42
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 64.0 bits (157), Expect = 2e-13
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 600 VDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
VD D+C ++ C NG C D + Y C C G+EG CE
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 61.0 bits (149), Expect = 2e-12
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 639 EIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
+ D+C SNPC+NGG C+D + + C C + G+ CE
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 53.6 bits (130), Expect = 1e-09
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 721 INIDECASGPCKNSGQCIDDVNAFICNCTNTATG 754
++ D+C S PC N G C DD+N++ C C G
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 50.6 bits (122), Expect = 1e-08
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C+ PC NGG+C +D Y+C C G+ GKNC
Sbjct: 4 DQCESNPCLNGGSCKDDI---NSYECWCPFGFEGKNC 37
Score = 39.8 bits (94), Expect = 8e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 823 IDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC 861
+D ++CE S+ C N G C + Y+C C F G C
Sbjct: 1 VDGDQCE--SNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 30.9 bits (71), Expect = 0.10
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 236 GGHCTDLWRDFSCSCVRPFLGHTCQ 260
GG C D + C C F G C+
Sbjct: 14 GGSCKDDINSYECWCPFGFEGKNCE 38
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 66.2 bits (160), Expect = 2e-12
Identities = 31/167 (18%), Positives = 47/167 (28%), Gaps = 31/167 (18%)
Query: 584 SYACKCPAGY--SSETCAVDIDECVTHN----CQNGARCIDG-----VARYSCECTPGWE 632
+ C C G SE + +EC C +CI+ V Y C C G+
Sbjct: 24 HFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYT 83
Query: 633 GALCEKEIDECLSNPCMNGGQCE----DRLAGFVCNCSEEYVGER-----CESLRQISCA 683
+D C C G+C + C+C+ V C + +C
Sbjct: 84 LXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ 143
Query: 684 DQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSR----CEINIDEC 726
VC + C C G+ C +
Sbjct: 144 LXCNTDNEVCXNV------EGVYXCQCMEGFTFDXEXNVC-LGPHHH 183
Score = 59.7 bits (143), Expect = 3e-10
Identities = 27/171 (15%), Positives = 44/171 (25%), Gaps = 25/171 (14%)
Query: 595 SETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEID-----------EC 643
+E AV +D C NG + + + C C G + C
Sbjct: 2 AEASAVTVDTI----CXNG-QLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXAC 56
Query: 644 LSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFP 703
++ + C C E Y + C C C +S
Sbjct: 57 GEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLD-VCQYXNCGESGECIVEYLS--EI 113
Query: 704 QGPICDCPPGYRGSRCE------INIDECASGPCKNSGQCIDDVNAFICNC 748
Q C C G + + C ++ C + + C C
Sbjct: 114 QSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQC 164
Score = 52.3 bits (124), Expect = 1e-07
Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 10/140 (7%)
Query: 542 NAHQLSGISDQADLVRCTSEAYLNLIIYISWLLSPHDSDPLTSYACKCPAGYSSETCAVD 601
+ + C E + D + Y C C GY+
Sbjct: 31 EGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCV 90
Query: 602 IDECVTHNCQNGA----RCIDGVARYSCECTPGWEGALCEK------EIDECLSNPCMNG 651
+D C NC + + C C G ++ C +
Sbjct: 91 LDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDN 150
Query: 652 GQCEDRLAGFVCNCSEEYVG 671
C + + C C E +
Sbjct: 151 EVCXNVEGVYXCQCMEGFTF 170
Score = 52.0 bits (123), Expect = 1e-07
Identities = 34/222 (15%), Positives = 44/222 (19%), Gaps = 62/222 (27%)
Query: 637 EKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQI-----SCADQPCYFGA 691
E E + GQ F C C+E V + + C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 692 VCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNT 751
C + P C C GY +D C C SG+CI +
Sbjct: 61 QCIENP-DPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIV-------EYLSE 112
Query: 752 ATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTT 811
A C G +
Sbjct: 113 IQSAGCSC-----------------------------------AIGXVPNPEDEXXCTX- 136
Query: 812 PILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQ 853
E +N C N G Y C C
Sbjct: 137 -------------TGETACQLXCNTDNEVCXNVEGVYXCQCM 165
Score = 45.4 bits (106), Expect = 2e-05
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQ---FDTCGYLCNFPDPCKDE----PCQNGG 876
+ ++ D NG+ + + C C C + C E C G
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 877 TC--HEDCRHQADYKCDCLPGWTGKNCTEVPE 906
C + D Y C C+ G+T T V +
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLD 92
Score = 44.6 bits (104), Expect = 4e-05
Identities = 34/198 (17%), Positives = 53/198 (26%), Gaps = 30/198 (15%)
Query: 719 CEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQL 778
+ +D C N GQ + N F C C S E E
Sbjct: 5 SAVTVDTI----CXN-GQLVQMSNHFXCMCNEGLVHLSENTCEEXN-----------ECX 48
Query: 779 GYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTG--EMCEIDINECELSSDMCG 836
T +C E P I GYT + C +D+ + +
Sbjct: 49 XETLGXACGEFGQCIENPDP----AQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGE 104
Query: 837 NNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNG---GTCHEDCRH-QADYKCDC 892
E +++ C+C + T +E C + + Y C C
Sbjct: 105 CIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQC 164
Query: 893 LPGWTG----KNCTEVPE 906
+ G+T C
Sbjct: 165 MEGFTFDXEXNVCLGPHH 182
Score = 28.5 bits (62), Expect = 7.4
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 5/29 (17%)
Query: 584 SYACKCPAGYS----SETCAVDIDECVTH 608
Y C+C G++ C + H
Sbjct: 159 VYXCQCMEGFTFDXEXNVC-LGPHHHHHH 186
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 63.7 bits (155), Expect = 4e-12
Identities = 28/152 (18%), Positives = 42/152 (27%), Gaps = 36/152 (23%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKE--------IDECLS---NPCM 649
D C C + C++ +C C PG+ I+EC + C
Sbjct: 1 DSRGC-ARWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 650 NGGQCEDRLAGFVCNCSEEYVGERCESLRQ----ISCAD--------QPCYFGAVCQDTK 697
C + + C CS Y + +C D C VC +T
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNT- 115
Query: 698 ISPYFPQGPICDCPPGYRGSRCE---INIDEC 726
C C PG++ C
Sbjct: 116 -----VGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 58.7 bits (142), Expect = 2e-10
Identities = 29/197 (14%), Positives = 48/197 (24%), Gaps = 75/197 (38%)
Query: 684 DQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEIN--------IDECASG---PCK 732
+ C + C + C C PG+ I I+ECA+ C
Sbjct: 6 ARWCPQDSSCVNA---------TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 733 NSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSL 792
C + ++ C C+ GY +
Sbjct: 57 KFSDCWNTEGSYDCVCSP----------------------------GYEPVSGAKTFKNE 88
Query: 793 DSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCAC 852
C+ D++EC C ++ C N G Y C C
Sbjct: 89 S------------------------ENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRC 123
Query: 853 Q--FDTCGYLCNFPDPC 867
+ + + N
Sbjct: 124 RPGWKPRHGIPNNQKDT 140
Score = 52.1 bits (125), Expect = 5e-08
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 584 SYACKCPAGYSSETCA-----------VDIDECV--THNCQNGARCIDGVARYSCECTPG 630
SY C C GY + A D+DEC H C + C + V YSC C PG
Sbjct: 67 SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPG 126
Query: 631 WEGALCEKE---IDEC 643
W+ C
Sbjct: 127 WKPRHGIPNNQKDTVC 142
Score = 50.6 bits (121), Expect = 2e-07
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 23/107 (21%)
Query: 813 ILGYTGEMCEIDINECELSSDM-CGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEP 871
I+ E C+ DINEC S + CG +C N G Y C C GY
Sbjct: 33 IITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCS---PGYEPVSGAKTFKNE 88
Query: 872 CQNGGTCHE---------DCRHQAD-------YKCDCLPGWTGKNCT 902
+ TC + C Y C C PGW ++
Sbjct: 89 --SENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 37.9 bits (88), Expect = 0.004
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 21/91 (23%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQ--FDTCGYLCNFP-DPCKD--EPCQNGGTC 878
D C + C + C+N C C F + + P + C D E C
Sbjct: 1 DSRGC---ARWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINE-CATLSKV 53
Query: 879 HEDCRHQAD-------YKCDCLPGWTGKNCT 902
C +D Y C C PG+ +
Sbjct: 54 --SCGKFSDCWNTEGSYDCVCSPGYEPVSGA 82
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 63.3 bits (154), Expect = 2e-11
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 23/132 (17%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+I++ +T Q G + + G S D Y+ ++ G + + + S
Sbjct: 31 EITLSFKTLQRNGLMLHTGKSAD---------------YVNLALKNGAVSLVINLGSGAF 75
Query: 158 S--YNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTG---ILDV-QVLYLG 211
K D H ++V RN+ V + ++G T + +L Y+G
Sbjct: 76 EALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGIL--TTTGYTQEDYTMLGSDDFFYVG 133
Query: 212 GIPETVHHHRSI 223
G P T S
Sbjct: 134 GSPSTADLPGSP 145
Score = 48.7 bits (116), Expect = 2e-06
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 39/130 (30%)
Query: 295 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 354
+I++ +T Q G + + G S D Y+ ++ G + + + S
Sbjct: 31 EITLSFKTLQRNGLMLHTGKSAD---------------YVNLALKNGAVSLVINLGSGAF 75
Query: 355 S--YNVGGVKLADGNNHLI------------------QTISSTG---ILDV-QVLYLGGI 390
K D H + T + +L Y+GG
Sbjct: 76 EALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGS 135
Query: 391 PETVHHHRSI 400
P T S
Sbjct: 136 PSTADLPGSP 145
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 59.1 bits (144), Expect = 3e-11
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 597 TCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWE--GALCEKEIDECLSNPCMNGGQC 654
+ VD+DEC + +CI+ Y CEC G+ G C + DEC G C
Sbjct: 1 SA-VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGNGTC 58
Query: 655 EDRLAGFVCNCSEEYVG 671
++ + GF C C E +
Sbjct: 59 KNVIGGFECTCEEGFEP 75
Score = 54.1 bits (131), Expect = 2e-09
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 584 SYACKCPAGYS--SETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA 634
SY C+CP GY C VD DEC N C + + + C C G+E
Sbjct: 25 SYRCECPFGYILAGNEC-VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPG 76
Score = 53.4 bits (129), Expect = 4e-09
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 823 IDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKD--EPCQNGGTCHE 880
+D++EC+ +G+CIN G Y+C C F GY+ + C D E +
Sbjct: 3 VDMDECKEPD--VCKHGQCINTDGSYRCECPF---GYILA-GNECVDTDECSVGNPCGNG 56
Query: 881 DCRHQA-DYKCDCLPGWTG 898
C++ ++C C G+
Sbjct: 57 TCKNVIGGFECTCEEGFEP 75
Score = 40.3 bits (95), Expect = 2e-04
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE-INIDECASGPCKNSGQCIDD 740
C + C +T C+CP GY + E ++ DEC+ G +G C +
Sbjct: 8 CKEPDVCKHGQCINT------DGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNV 61
Query: 741 VNAFICNC 748
+ F C C
Sbjct: 62 IGGFECTC 69
Score = 28.3 bits (64), Expect = 2.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 721 INIDECASGPCKNSGQCIDDVNAFICNC 748
+++DEC GQCI+ ++ C C
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCEC 30
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 60.3 bits (146), Expect = 2e-10
Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
D+S+ R+++ G + + + E++AG + + + PE
Sbjct: 30 DVSLRFRSQRAYGILMATT-------------SRDSADTLRLELDAGRVKLTVNLGKGPE 76
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGI-LDVQVLYLGGIPET 216
+ G L D H ++VVR +++ ++ + ++ L+ + G I E
Sbjct: 77 TLFA-GYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITE- 134
Query: 217 VHHHRSIRSPYQ 228
+ S+ S +
Sbjct: 135 RRYLSSVPSNFI 146
Score = 43.3 bits (102), Expect = 1e-04
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 36/132 (27%)
Query: 295 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 354
D+S+ R+++ G + + + E++AG + + + PE
Sbjct: 30 DVSLRFRSQRAYGILMATT-------------SRDSADTLRLELDAGRVKLTVNLGKGPE 76
Query: 355 SYNVGGVKLADGNNHLIQ------------------TISSTG---ILDVQVLYLGGIPET 393
+ G L D H ++ T G L+ + G I E
Sbjct: 77 TLFA-GYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITE- 134
Query: 394 VHHHRSIRSPYQ 405
+ S+ S +
Sbjct: 135 RRYLSSVPSNFI 146
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 57.3 bits (139), Expect = 3e-10
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA---LCEKEI 640
Y + + +EC+ +N C D Y C C G++ CE +I
Sbjct: 12 DYDIPTTENLYFQGA-MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DI 69
Query: 641 DECLSN-PCMNGGQCEDRLAGFVCNCSEEYV 670
DEC C C + G+ C C E +
Sbjct: 70 DECQDPDTC--SQLCVNLEGGYKCQCEEGFQ 98
Score = 48.9 bits (117), Expect = 3e-07
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKD-EPCQ 873
+ NEC ++ C + C + Y+C C G+ C+D + CQ
Sbjct: 20 NLYFQGAM-GTNECLDNNGGC--SYVCNDLKIGYECLCPD---GFQLVAQRRCEDIDECQ 73
Query: 874 NGGTCHEDCRHQA-DYKCDCLPGWT----GKNC 901
+ TC + C + YKC C G+ K C
Sbjct: 74 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 48.9 bits (117), Expect = 3e-07
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 649 MNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPIC 708
M ++ + +E + C D VC D KI C
Sbjct: 1 MKHHHHHHPMSDYDIPTTENLYFQGAMGTN--ECLDNNGGCSYVCNDLKIGYE------C 52
Query: 709 DCPPGYR---GSRCEINIDECAS-GPCKNSGQCIDDVNAFICNC 748
CP G++ RCE +IDEC C S C++ + C C
Sbjct: 53 LCPDGFQLVAQRRCE-DIDECQDPDTC--SQLCVNLEGGYKCQC 93
Score = 43.9 bits (104), Expect = 2e-05
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 837 NNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQAD-YKCDCLPG 895
+ + DY + + C D NGG C C Y+C C G
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAMGTNECLDN---NGG-CSYVCNDLKIGYECLCPDG 57
Query: 896 WT---GKNCTEVPE 906
+ + C ++ E
Sbjct: 58 FQLVAQRRCEDIDE 71
Score = 38.8 bits (91), Expect = 9e-04
Identities = 23/146 (15%), Positives = 32/146 (21%), Gaps = 66/146 (45%)
Query: 708 CDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGD 767
+EC S C D + C
Sbjct: 15 IPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYEC--------------------- 52
Query: 768 LLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINE 827
CP+ F L + CE DI+E
Sbjct: 53 -----------------LCPDGFQLVAQ-----------------------RRCE-DIDE 71
Query: 828 CELSSDMCGNNGECINQPGDYKCACQ 853
C+ + C+N G YKC C+
Sbjct: 72 CQDPD---TCSQLCVNLEGGYKCQCE 94
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 58.7 bits (142), Expect = 4e-10
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 15/122 (12%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+++ T Q + + S Y+ + G++ V+ +
Sbjct: 32 RLAIGFSTVQKEAVLVRVDSSSGL------------GDYLELHIHQGKIGVKFNVGTDDI 79
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNG---TEYFRKTISSTGILDVQVLYLGGIP 214
+ + DG H+++ R+ ++++ E + T + +GG
Sbjct: 80 AIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 139
Query: 215 ET 216
+
Sbjct: 140 QG 141
Score = 44.1 bits (104), Expect = 5e-05
Identities = 13/122 (10%), Positives = 33/122 (27%), Gaps = 35/122 (28%)
Query: 295 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 354
+++ T Q + + S Y+ + G++ V+ +
Sbjct: 32 RLAIGFSTVQKEAVLVRVDSSSGL------------GDYLELHIHQGKIGVKFNVGTDDI 79
Query: 355 SYNVGGVKLADGNNHLIQ----------------------TISSTGILDVQ-VLYLGGIP 391
+ + DG H+++ I + Q + +GG
Sbjct: 80 AIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 139
Query: 392 ET 393
+
Sbjct: 140 QG 141
Score = 31.4 bits (71), Expect = 0.90
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 469 NGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQV 518
+ S Y+ + G++ V+ + + + DG H+++
Sbjct: 49 VDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRF 98
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 58.0 bits (140), Expect = 8e-10
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 19/133 (14%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
S +RT G IFY + + + + G ++L +
Sbjct: 29 SSSFEVRTWDPEGVIFYGD-------------TNPKDDWFMLGLRDGRPEIQLHNHWAQL 75
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQVLYLGGIPETV 217
+ G +L DG H ++V V ++++G E + + + LGG+
Sbjct: 76 TVGA-GPRLDDGRWHQVEVKMEGDSVLLEVDGEE--VLRLRQVSGHPIMRIALGGLLF-- 130
Query: 218 HHHRSIRSPYQPS 230
++R P P+
Sbjct: 131 -PASNLRLPLVPA 142
Score = 44.9 bits (106), Expect = 2e-05
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 35/131 (26%)
Query: 295 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 354
S +RT G IFY + + + + G ++L +
Sbjct: 29 SSSFEVRTWDPEGVIFYGD-------------TNPKDDWFMLGLRDGRPEIQLHNHWAQL 75
Query: 355 SYNVGGVKLADGNNHLI------------------QTISSTGILDVQVLYLGGIPETVHH 396
+ G +L DG H + + + + LGG+
Sbjct: 76 TVGA-GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMRIALGGLLF---P 131
Query: 397 HRSIRSPYQPS 407
++R P P+
Sbjct: 132 ASNLRLPLVPA 142
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 58.0 bits (140), Expect = 1e-09
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 14/152 (9%)
Query: 76 TTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETS 135
S + + R + + + M R G + Y G D
Sbjct: 15 NGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGD----------- 63
Query: 136 YIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRNVTLVQVKL-NGTEYFR 194
+++ + L R +A G + + RN +++ +G
Sbjct: 64 FVSLALHNRHLEFRYDLGKGAAIIRS-KEPIALGTWVRVFLERNGRKGALQVGDGPRVLG 122
Query: 195 KTISSTGILDV-QVLYLGGIPETVHHHRSIRS 225
++ +L++ + LY+GG P+ R
Sbjct: 123 ESPVPHTMLNLKEPLYVGGAPDFSKLARGAAV 154
Score = 44.1 bits (104), Expect = 6e-05
Identities = 20/152 (13%), Positives = 38/152 (25%), Gaps = 34/152 (22%)
Query: 273 TTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETS 332
S + + R + + + M R G + Y G D
Sbjct: 15 NGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGD----------- 63
Query: 333 YIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQ------------------TI 374
+++ + L R +A G +
Sbjct: 64 FVSLALHNRHLEFRYDLGKGAAIIRS-KEPIALGTWVRVFLERNGRKGALQVGDGPRVLG 122
Query: 375 SSTG---ILDV-QVLYLGGIPETVHHHRSIRS 402
S +L++ + LY+GG P+ R
Sbjct: 123 ESPVPHTMLNLKEPLYVGGAPDFSKLARGAAV 154
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 53.8 bits (130), Expect = 3e-09
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCK----DEPCQ--NGGT 877
DI+EC +S D+CG G+C+N PGD++C C GY F DE CQ
Sbjct: 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDE---GYESGFMMMKNCMDIDE-CQRDPLLC 56
Query: 878 CHEDCR-HQADYKCDCLPGWT----GKNC 901
C + Y+C+C PG C
Sbjct: 57 RGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 47.3 bits (113), Expect = 6e-07
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 584 SYACKCPAGYS-----SETCAVDIDECV--THNCQNGARCIDGVARYSCECTPGWEGA 634
+ CKC GY + C +DIDEC C+ G C + Y CEC PG + +
Sbjct: 24 DFECKCDEGYESGFMMMKNC-MDIDECQRDPLLCRGG-VCHNTEGSYRCECPPGHQLS 79
Score = 41.1 bits (97), Expect = 8e-05
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQ 853
+ C DI+EC+ +C G C N G Y+C C
Sbjct: 37 FMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECP 73
Score = 39.6 bits (93), Expect = 3e-04
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 601 DIDECVT-------HNCQNGARCIDGVARYSCECTPGWEGALCEKE----IDECLSNPCM 649
DIDEC C N G + C+C G+E + IDEC +P +
Sbjct: 2 DIDECRISPDLCGRGQCVN----TPG--DFECKCDEGYESGFMMMKNCMDIDECQRDPLL 55
Query: 650 -NGGQCEDRLAGFVCNCSEEY 669
GG C + + C C +
Sbjct: 56 CRGGVCHNTEGSYRCECPPGH 76
Score = 36.1 bits (84), Expect = 0.005
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 708 CDCPPGYRGSRCE----INIDECASGPCK-NSGQCIDDVNAFICNC 748
C C GY ++IDEC P G C + ++ C C
Sbjct: 27 CKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCEC 72
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 56.8 bits (137), Expect = 3e-09
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 15/165 (9%)
Query: 63 SPDFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRS 122
+P A F + + +R I + +RT G + + G
Sbjct: 2 APGQYGAYF----HDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGV----- 52
Query: 123 SPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRNVTL 182
G + +I+ ++ G L R Q S + DG H + +R
Sbjct: 53 ---EVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVS-EDPINDGEWHRVTALREGRR 108
Query: 183 VQVKLNGTEYFRKTISST-GILDVQ-VLYLGGIPETVHHHRSIRS 225
++++G E ++ + +Y+GG P+ S
Sbjct: 109 GSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFS 153
Score = 41.0 bits (96), Expect = 7e-04
Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 31/150 (20%)
Query: 275 NSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYI 334
+ + +R I + +RT G + + G G + +I
Sbjct: 13 DGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGV--------EVGEAGQGKDFI 64
Query: 335 AAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQ------------------TISS 376
+ ++ G L R Q S + DG H + + S
Sbjct: 65 SLGLQDGHLVFRYQLGSGEARLVS-EDPINDGEWHRVTALREGRRGSIQVDGEELVSGRS 123
Query: 377 TG---ILDVQ-VLYLGGIPETVHHHRSIRS 402
G ++ + +Y+GG P+ S
Sbjct: 124 PGPNVAVNAKGSVYIGGAPDVATLTGGRFS 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 4e-09
Identities = 116/683 (16%), Positives = 197/683 (28%), Gaps = 259/683 (37%)
Query: 251 VRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIF 310
RP T H + + L +V + F QL+ F
Sbjct: 6 TRPL------------TLSHGSLEHVL---------------LVPTASFFIASQLQ-EQF 37
Query: 311 YLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVR-LQFNSTPESYNVGGVKLADGNNH 369
+ P+ A +E + A EL + L + S+ +
Sbjct: 38 ----NKILPEPTEGFAADDEPTTPA------ELVGKFLGYVSS---------LVEPSKVG 78
Query: 370 LIQTISSTGILDVQVLYLGGIPETVHHHRSIRSPYQPSRSYPRWATYDEMENYTTARRRY 429
+ + + + + YL G +H ++ + T + ++NY TAR
Sbjct: 79 QFDQVLNLCLTEFENCYLEG--NDIH---ALAAKLLQENDTTLVKTKELIKNYITARI-M 132
Query: 430 SRQTAGEKQFSPLPNFKGI-IHDVQIYFISGSGDRSSPSSNGAGSEETSYIAAEMEAGEL 488
+++ +K S L F+ + + Q+ I G G G+ + Y
Sbjct: 133 AKRPFDKKSNSAL--FRAVGEGNAQLVAIFG----------GQGNTDD-Y---------- 169
Query: 489 FVRLQFNSTPESYNVGGVKLADGNNHLIQVGPGFDFQRIDHPFTKKHVIVCVLNAHQ-LS 547
F L+ + Y V + D LI+ + I + V LN + L
Sbjct: 170 FEELR-----DLYQTYHVLVGD----LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 548 GISDQADLVRCTSEAYLNLIIYISW----LLSPHDSDPLTSY--ACKCPAGYSSE----- 596
S+ D + YL L I IS ++ L Y K G++
Sbjct: 221 NPSNTPD------KDYL-LSIPISCPLIGVIQ------LAHYVVTAKL-LGFTPGELRSY 266
Query: 597 -----TCAVDIDECVT--------------HNCQN--------GARCIDGVARYSC---- 625
+ + VT + + G RC + S
Sbjct: 267 LKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 626 --ECTPGWEGA----LC---------EKEIDECLSN---PC--------MNGGQC----- 654
+ EG L + +++ N P +NG +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 655 --EDRLAGFVCNCSEEYVGERCESLRQISCA---DQPCYFGAVCQDTKISPY-------- 701
+ L G +LR+ DQ ++I P+
Sbjct: 382 PPQS-LYGL------------NLTLRKAKAPSGLDQ----------SRI-PFSERKLKFS 417
Query: 702 --FPQGPICDCP---PGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGAS 756
F P+ P + IN D + N+ V + +T G+
Sbjct: 418 NRF--LPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--Y-----DTFDGSD 467
Query: 757 M----GCLGEVRLGDLLL--PYFTWEQLGYTDTLSCPECFSLDSGPGG-PGLAD------ 803
+ G + E R+ D ++ P WE LD GPGG GL
Sbjct: 468 LRVLSGSISE-RIVDCIIRLPVK-WETTTQFKATHI-----LDFGPGGASGLGVLTHRNK 520
Query: 804 SGPGVQTTPILGYTGEMCEIDIN 826
G GV+ I+ T +DIN
Sbjct: 521 DGTGVRV--IVAGT-----LDIN 536
Score = 52.7 bits (126), Expect = 5e-07
Identities = 85/557 (15%), Positives = 145/557 (26%), Gaps = 205/557 (36%)
Query: 214 PETVHHHRSIRSPYQ-PSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQYNFTA-----AT 267
P T+ H S+ P+ S+ + L F+ P G T
Sbjct: 8 PLTLSHG-SLEHVLLVPTASFF---IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 268 F-GHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGD-----RSSP 321
F G+ +SLV + G + + + F YL G+ D
Sbjct: 64 FLGY---VSSLVEPSKVGQFDQVLNLCLTE--FENC--------YLEGN-DIHALAAKLL 109
Query: 322 SSNGAGSEET-----SYIAAEMEAGELFVRLQ----FNSTPES----YNV-GGVKLADGN 367
N +T +YI A + A F + F + E + GG GN
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG----QGN 165
Query: 368 NHL----IQTISSTGILDVQVLYLGGIPETVHHHRS-----IRSPYQPSRSYPR------ 412
++ + T Y + + + IR+ + + +
Sbjct: 166 TDDYFEELRDLYQT--------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 413 WATYDE----------------------MENYTTARRRYSRQTAGEKQFSP---LPNFKG 447
W + +Y + G F+P KG
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK-----LLG---FTPGELRSYLKG 269
Query: 448 II-HDVQIY---FISGSGDRSSPSSN-----------GAGSEET--------SYIAAEME 484
H + I+ + S + G E S + +E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 485 AGE------LFVR------LQ--------------------FNSTPESYNVGG--VKLAD 510
E L + +Q N ++ V G L
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYG 388
Query: 511 GNNHL--IQVGPGFDFQRIDHPFTKKHV--------IVCVLNAHQLSGISDQ--ADLVRC 558
N L + G D RI PF+++ + + ++H L SD DLV+
Sbjct: 389 LNLTLRKAKAPSGLDQSRI--PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK- 445
Query: 559 TSEAYLNLIIYISWLLSPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCID 618
+S+ + D + P Y + D+ + CI
Sbjct: 446 ---------NNVSF--NAKD--------IQIPV-YDTFD-GSDLRVLSGSISERIVDCI- 483
Query: 619 GVARYSCECTPGWEGAL 635
R + WE
Sbjct: 484 --IRLPVK----WETTT 494
Score = 47.0 bits (111), Expect = 4e-05
Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 71/204 (34%)
Query: 24 ANEEQTIYPINP------ITQFEQP----TSLS-----QSQTSFPTTTNFTFVTSPDFTA 68
NE T Y TQF QP + +S+ P + A
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP---------ADATFA 1760
Query: 69 ATFGH---ENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYL---GGSGDRS 122
GH E +L ++ V + I + RG + RS
Sbjct: 1761 ---GHSLGEYA--AL--ASLADV--------MSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 123 S-------PSSNGAG--SEETSYIAAEM--EAGELFVRLQ---FNSTPESYNVGGVKLA- 167
+ P A E Y+ + G L ++ +N + Y G A
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL---VEIVNYNVENQQYVAAGDLRAL 1862
Query: 168 DGNNHLIQV-----VRNVTLVQVK 186
D + V ++ + +++++
Sbjct: 1863 D---TVTNVLNFIKLQKIDIIELQ 1883
Score = 39.6 bits (92), Expect = 0.005
Identities = 57/435 (13%), Positives = 101/435 (23%), Gaps = 177/435 (40%)
Query: 456 FISGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVR-LQFNSTPESYNVGGVKLADGNNH 514
F P+ A +E + A EL + L + ++
Sbjct: 37 FNK---ILPEPTEGFAADDEPTTPA------ELVGKFLGY-------------VS----S 70
Query: 515 LIQVGPGFDFQRI-----DHPFTKK-------HVIVCVLNAHQLSGISDQADLVRCTSEA 562
L++ F ++ F H + L + + +L++ A
Sbjct: 71 LVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 563 YLNLIIYISWLLSPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVAR 622
+ +S AV +G A+
Sbjct: 130 RIMAKRPFD---KKSNSALFR---------------AVG----------------EGNAQ 155
Query: 623 -YSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQIS 681
A+ GGQ G N +++Y E LR +
Sbjct: 156 LV----------AIF--------------GGQ------G---N-TDDYFEE----LRDLY 177
Query: 682 CADQPC------YFGAVCQD-----TKISPYFPQGPICD----------CPPGYRGSRCE 720
+ + F QG + P
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSNTPDKDYLLSIP 235
Query: 721 INIDECASGP-------------CKNSGQCIDDVNAFICNCTN------TATGASMGCLG 761
I S P K G ++ +++ T TA +
Sbjct: 236 I------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 762 E--VRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPG-LADSGPGVQTTP-----I 813
E + + +G + C E + S P P L DS + P I
Sbjct: 290 ESFFVSVRKAITVLFF--IG----VRCYEAYPNTSLP--PSILEDSLENNEGVPSPMLSI 341
Query: 814 LGYTGEMCEIDINEC 828
T E + +N+
Sbjct: 342 SNLTQEQVQDYVNKT 356
Score = 33.9 bits (77), Expect = 0.37
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 21/82 (25%)
Query: 896 WTGKNCTEVPEYLPSRVVDLALLIIGPI----------LAILLLG-GLISMAVLCLMARQ 944
+ G + + + R+VD +I P+ IL G G S + L R
Sbjct: 463 FDGSDLRVLSGSISERIVDC--IIRLPVKWETTTQFKATHILDFGPGGAS-GLGVLTHRN 519
Query: 945 KRGR--R----GTYSPSSQ-EY 959
K G R GT + +Y
Sbjct: 520 KDGTGVRVIVAGTLDINPDDDY 541
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 55.8 bits (134), Expect = 1e-08
Identities = 14/122 (11%), Positives = 41/122 (33%), Gaps = 15/122 (12%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+++ T Q + + S Y+ + G++ V+ +
Sbjct: 66 RLAIGFSTVQKEAVLVRVDSSSGLGD------------YLELHIHQGKIGVKFNVGTDDI 113
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTIS--STGILDVQ-VLYLGGIP 214
+ + DG H+++ R+ ++++ + + I + Q + +GG
Sbjct: 114 AIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 173
Query: 215 ET 216
+
Sbjct: 174 QG 175
Score = 44.7 bits (105), Expect = 6e-05
Identities = 19/173 (10%), Positives = 43/173 (24%), Gaps = 39/173 (22%)
Query: 244 RDFSCSCVRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTR 303
+ R + T F +T R + R +++ T
Sbjct: 19 HSVPIAIYRSPASLRGGHAGTTYIFSK---GGGQITYKWPPNDRPSTRAD-RLAIGFSTV 74
Query: 304 QLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKL 363
Q + + S Y+ + G++ V+ + + +
Sbjct: 75 QKEAVLVRVDSSSGLGD------------YLELHIHQGKIGVKFNVGTDDIAIEESNAII 122
Query: 364 ADGNNHLIQ----------------------TISSTGILDVQ-VLYLGGIPET 393
DG H+++ I + Q + +GG +
Sbjct: 123 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG 175
Score = 30.8 bits (69), Expect = 1.7
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 469 NGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQV 518
+ S Y+ + G++ V+ + + + DG H+++
Sbjct: 83 VDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRF 132
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 55.3 bits (133), Expect = 1e-08
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 65 DFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSP 124
D A + + + S +RT G IFY
Sbjct: 12 DPPAVHLSNGPGQEPIAVMTF----DLTKITKTSSSFEVRTWDPEGVIFY---------- 57
Query: 125 SSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVVRNVTLVQ 184
G + + + + G ++L + + G +L DG H ++V V
Sbjct: 58 ---GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA-GPRLDDGRWHQVEVKMEGDSVL 113
Query: 185 VKLNGTEYFRKTISSTGILD----VQVLYLGGIPETVHHHRSIRSPYQPS 230
++++G E R S + + + LGG+ ++R P P+
Sbjct: 114 LEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF---PASNLRLPLVPA 160
Score = 48.0 bits (114), Expect = 4e-06
Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 45/181 (24%)
Query: 251 VRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIF 310
+RP L ++ A + + + S +RT G IF
Sbjct: 1 LRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTF----DLTKITKTSSSFEVRTWDPEGVIF 56
Query: 311 YLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHL 370
Y G + + + + G ++L + + G +L DG H
Sbjct: 57 Y-------------GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGA-GPRLDDGRWHQ 102
Query: 371 IQTISSTGILDVQV------------------------LYLGGIPETVHHHRSIRSPYQP 406
++ + ++V + LGG+ ++R P P
Sbjct: 103 VEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF---PASNLRLPLVP 159
Query: 407 S 407
+
Sbjct: 160 A 160
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 54.5 bits (131), Expect = 2e-08
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 35/136 (25%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+ I+T +G I + G +RS YIA + G +Q
Sbjct: 51 HFELSIKTEATQGLILWSGKGLERS------------DYIALAIVDG----FVQM----- 89
Query: 158 SYNVGG--------VKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTG---ILDVQ 206
Y++G V + + I+ R +++ T SS LD
Sbjct: 90 MYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEA--PITGSSPLGATQLDTD 147
Query: 207 -VLYLGGIPETVHHHR 221
L+LGG+ H+
Sbjct: 148 GALWLGGMERLSVAHK 163
Score = 41.8 bits (98), Expect = 3e-04
Identities = 31/175 (17%), Positives = 47/175 (26%), Gaps = 58/175 (33%)
Query: 254 FLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNIVDISMFIRTRQLRGAIFYLG 313
F G T A T + + I+T +G I + G
Sbjct: 17 FDGRTYMEYHNAVTKSPD--ALDYPAEP-----SEKALQSNHFELSIKTEATQGLILWSG 69
Query: 314 GSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGG--------VKLAD 365
+RS YIA + G +Q Y++G V +
Sbjct: 70 KGLERS------------DYIALAIVDG----FVQM-----MYDLGSKPVVLRSTVPINT 108
Query: 366 GNNHLIQ------------------TISSTG---ILDVQ-VLYLGGIPETVHHHR 398
+ I+ T SS LD L+LGG+ H+
Sbjct: 109 NHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHK 163
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 54.1 bits (130), Expect = 2e-08
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 31/134 (23%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+ +RT +G + ++G + +R+ Y+A + G LQ
Sbjct: 38 HFELSLRTEATQGLVLWIGKAAERA------------DYMALAIVDG----HLQL----- 76
Query: 158 SYNVGG--------VKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTIS-STGILDVQ-V 207
SY++G VK+ I+ R +++ + LD
Sbjct: 77 SYDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGA 136
Query: 208 LYLGGIPETVHHHR 221
L+LGG+ +
Sbjct: 137 LWLGGLQKLPVGQA 150
Score = 41.0 bits (96), Expect = 7e-04
Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 51/134 (38%)
Query: 295 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 354
+ +RT +G + ++G + +R+ Y+A + G LQ
Sbjct: 38 HFELSLRTEATQGLVLWIGKAAERA------------DYMALAIVDG----HLQL----- 76
Query: 355 SYNVGG--------VKLADGNNHLI------------------QTISSTG---ILDVQ-V 384
SY++G VK+ I T SS LD
Sbjct: 77 SYDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGA 136
Query: 385 LYLGGIPETVHHHR 398
L+LGG+ +
Sbjct: 137 LWLGGLQKLPVGQA 150
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 51.5 bits (124), Expect = 2e-08
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 601 DIDECVT--HNCQNGARCIDGVARYSCECTPGWE----GALCEKEIDECLSNPCMNGGQC 654
D+DEC C C + + CEC G+ CE +IDEC N C C
Sbjct: 2 DVDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMC--AQLC 57
Query: 655 EDRLAGFVCNCSE 667
+ G+ C C
Sbjct: 58 VNYPGGYTCYCDG 70
Score = 46.1 bits (110), Expect = 1e-06
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCAC----QFDTCGYLCNFPDPCKDEPCQNGGTCH 879
D++EC L +CG C N PGD++C C +++ C D C + C C
Sbjct: 2 DVDECSLKPSICGT-AVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCA--QLCV 58
Query: 880 EDCRHQADYKCDC--LPGWT----GKNCTEV 904
+ Y C C G+ K+C V
Sbjct: 59 ---NYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
Score = 45.0 bits (107), Expect = 4e-06
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 584 SYACKCPAGYS----SETCAVDIDECVTHNCQNGARCIDGVARYSCECT--PGWE 632
+ C+CP GY S++C DIDEC + C C++ Y+C C G++
Sbjct: 24 DFECECPEGYRYNLKSKSC-EDIDECSENMCA--QLCVNYPGGYTCYCDGKKGFK 75
Score = 40.7 bits (96), Expect = 1e-04
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 691 AVCQDTKISPYFPQGPICDCPPGYR----GSRCEINIDECASGPCKNSGQCIDDVNAFIC 746
AVC++ C+CP GYR CE +IDEC+ C + C++ + C
Sbjct: 16 AVCKNIPGDFE------CECPEGYRYNLKSKSCE-DIDECSENMC--AQLCVNYPGGYTC 66
Query: 747 NC 748
C
Sbjct: 67 YC 68
Score = 35.7 bits (83), Expect = 0.008
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 814 LGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGY 859
+ CE DI+EC S +MC C+N PG Y C C G+
Sbjct: 35 YNLKSKSCE-DIDEC--SENMC--AQLCVNYPGGYTCYCDGKK-GF 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 3e-08
Identities = 68/487 (13%), Positives = 129/487 (26%), Gaps = 162/487 (33%)
Query: 145 ELFVRLQ---FNSTPESYNV----GGV-K--LADGNNHLIQVVRNVTLVQVKLNGTEY-- 192
+ +++L+ P + G K +A + V + VQ K++ +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA------LDVCLSYK-VQCKMDFKIFWL 187
Query: 193 -FRKTISSTGILD-VQVLYLGGIP---ETVHHHRSIRSP----------YQPSRSYPSGG 237
+ S +L+ +Q L P H +I+ S+ Y
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--- 244
Query: 238 HC----TDLWRDFSCSCVRPFLGHTCQYNFTAATFGHENTTNSLVTVAVGGVARRAVRNI 293
+C ++ + F +C+ T T VT + + +
Sbjct: 245 NCLLVLLNVQ---NAKAWNAF-NLSCK---ILLT-----TRFKQVTDFLSAATTTHIS-L 291
Query: 294 VDISMFIRTRQLRGAIF--YLGGSGDRSSPSSNGAGSEETSYIAAEM------------- 338
SM + +++ + YL S IA +
Sbjct: 292 DHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 339 -------------------EAGELFVRLQ-FNSTPESYNV---------GGVK------- 362
E ++F RL F P S ++ V
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---PPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 363 --------LADGNNHLIQTISSTGILDVQVLYLGGIPETVHHHRSIRSPYQPSRSYPRWA 414
L + S+ I + + + HRSI Y +++
Sbjct: 408 VNKLHKYSLVEKQPKE----STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 415 -TYDEMENYTTARRRYS------RQTAGEKQFSPLP----NFKGIIHDVQIYFISGSGDR 463
++ Y YS + ++ + +F+ F+
Sbjct: 464 LIPPYLDQYF-----YSHIGHHLKNIEHPERMTLFRMVFLDFR---------FLEQKIRH 509
Query: 464 SSPSSNGAGSEET---------SYIAAEMEAGELFVR--LQFNSTPESYNVGGVKLADGN 512
S + N +GS YI E V L F E N+ K D
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-NLICSKYTD-- 566
Query: 513 NHLIQVG 519
L+++
Sbjct: 567 --LLRIA 571
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 52.0 bits (125), Expect = 3e-08
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 584 SYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWE---GALCEKEI 640
SY C C G++ + + A C SCEC G+ G +C +I
Sbjct: 23 SYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ-ASCECPEGYILDDGFICT-DI 80
Query: 641 DECLSNPCMNGGQCEDRLAGFVCNCSEEYVG 671
DEC N G C + F C C +
Sbjct: 81 DEC-ENGGFCSGVCHNLPGTFECICGPDSAL 110
Score = 51.2 bits (123), Expect = 6e-08
Identities = 23/122 (18%), Positives = 34/122 (27%), Gaps = 18/122 (14%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAG 660
+D C NC+ Y C C G+ E + N C D
Sbjct: 3 PVDPCFRANCEYQ-CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQ 60
Query: 661 FVCNCSEEYVGERCESLRQISCAD-----QPCYFGAVCQDTKISPYFPQGPICDCPPGYR 715
C C E Y+ + C D + VC + + + C C P
Sbjct: 61 ASCECPEGYILD-----DGFICTDIDECENGGFCSGVCHNLPGT-FE-----CICGPDSA 109
Query: 716 GS 717
+
Sbjct: 110 LA 111
Score = 46.2 bits (110), Expect = 3e-06
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 824 DINECELSSDMCGNNGECINQ-PGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDC 882
++ C +C Y C C G+ +P + + N C DC
Sbjct: 3 PVDPC----FRANCEYQCQPLDQTSYLCVCAE---GFAPIPHEPHRCQMFCNQTACPADC 55
Query: 883 RHQADYKCDCLPGWT---GKNCTEVPE 906
C+C G+ G CT++ E
Sbjct: 56 DPNTQASCECPEGYILDDGFICTDIDE 82
Score = 44.3 bits (105), Expect = 2e-05
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 576 PHDSDPLTSYACKCPAGYSSE---TCAVDIDECVT-HNCQNGARCIDGVARYSCECTPGW 631
P D DP T +C+CP GY + C DIDEC C C + + C C P
Sbjct: 52 PADCDPNTQASCECPEGYILDDGFIC-TDIDECENGGFCS--GVCHNLPGTFECICGPDS 108
Query: 632 EGA 634
A
Sbjct: 109 ALA 111
Score = 42.0 bits (99), Expect = 8e-05
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKD--EPC 872
G+ + + C++ + +C + C C GY+ + C D E C
Sbjct: 31 GFAPIPH--EPHRCQMFCNQTACPADC-DPNTQASCECP---EGYILDDGFICTDIDE-C 83
Query: 873 QNGGTCHEDCRHQAD-YKCDCLPGWT-----GKNC 901
+NGG C C + ++C C P G +C
Sbjct: 84 ENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 38.5 bits (90), Expect = 0.002
Identities = 31/172 (18%), Positives = 44/172 (25%), Gaps = 73/172 (42%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDV 741
C C CQ + Y C C G+ E + +
Sbjct: 7 CFRANC--EYQCQPLDQTSYL-----CVCAEGFAPIPHEPHRCQMFCNQTACP------- 52
Query: 742 NAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGL 801
+C + C CPE + LD
Sbjct: 53 ----ADCDPNTQAS---C-------------------------ECPEGYILD-------- 72
Query: 802 ADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQ 853
G +C DI+ECE + C +G C N PG ++C C
Sbjct: 73 ---------------DGFICT-DIDECE-NGGFC--SGVCHNLPGTFECICG 105
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 53.9 bits (129), Expect = 2e-07
Identities = 62/330 (18%), Positives = 85/330 (25%), Gaps = 94/330 (28%)
Query: 603 DECVTHNCQNGARCIDGVARYSCECTPGWEGALCEK----------------EIDECLSN 646
EC + N G+ C C +G CE + C
Sbjct: 261 SECAPVDGVNEEVE--GMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKC 318
Query: 647 PCMNGGQC----------EDRLAGFVC-NCSEEYVGERCESLRQISCADQPCYFGAVCQD 695
C ++G VC NC +G CE + P YF +D
Sbjct: 319 NCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCK-------PFYFQHPERD 371
Query: 696 TKISPYFPQGPI-CDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATG 754
P C C P GS D C C G
Sbjct: 372 ----IRDPNLCEPCTCDP--AGSENGGICDGYTDFSVGLIAGQ--------CRCKLHVEG 417
Query: 755 ASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGP-GGPGLADSGPGVQTTPI 813
C D+ F C L + P G P +++G
Sbjct: 418 ER--C-------DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETG---YCYCK 465
Query: 814 LGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQ 873
TG+ C ++C P + + D C PC C
Sbjct: 466 RLVTGQRC----DQC---------------LPQHWGLSNDLDGC-------RPC---DCD 496
Query: 874 NGGTCHEDCRHQADYKCDCLPGWTGKNCTE 903
GG + C + +C CLP G+ C E
Sbjct: 497 LGGALNNSC-SEDSGQCSCLPHMIGRQCNE 525
Score = 48.5 bits (115), Expect = 7e-06
Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 31/194 (15%)
Query: 576 PHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCE-CTPGWEGA 634
+ + + C C C + C+ R +G +C+ C +
Sbjct: 270 NEEVEGMVHGHCMCRHNTKGLNC----ELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSS 325
Query: 635 LCEKEIDECLSNPCMNGGQCEDRLAGFVC----NCSEEYVGERCESLRQISCADQPC--- 687
C ++ L+ ++GG C++ + C Y +R +PC
Sbjct: 326 SCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRD-PNLCEPCTCD 384
Query: 688 ----YFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASG----PCKNSGQCID 739
G +C C C G RC D C G ++ C
Sbjct: 385 PAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERC----DVCKEGFYDLSAEDPYGC-- 438
Query: 740 DVNAFICNCTNTAT 753
C C T
Sbjct: 439 ----KSCACNPLGT 448
Score = 35.1 bits (80), Expect = 0.13
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 36/196 (18%)
Query: 716 GSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFT- 774
C P + ++ + C C + G + C +L + ++
Sbjct: 251 RGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLN--C-------ELCMDFYHD 301
Query: 775 --WEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSS 832
W ++ +C +C + S + + N
Sbjct: 302 LPWRPAEGRNSNACKKCNC-------NEHSSSCH---------FDMAVFLATGNVSGGVC 345
Query: 833 DMCGNNGECIN----QPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTC---HEDCRHQ 885
D C +N N +P ++ + LC P C +NGG C +
Sbjct: 346 DNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCE-PCTCDPAGSENGGICDGYTDFSVGL 404
Query: 886 ADYKCDCLPGWTGKNC 901
+C C G+ C
Sbjct: 405 IAGQCRCKLHVEGERC 420
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 49.7 bits (118), Expect = 2e-06
Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 34/146 (23%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDE------CLSNPCMNGGQCEDRL 658
V+ +G + + G Y+ E G++ + + + + P +GG
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWV--- 158
Query: 659 AGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSR 718
+G R + A D + + P G+RG+
Sbjct: 159 -----------LGTRGK--------QNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTL 199
Query: 719 CEINIDE------CASGPCKNSGQCI 738
+ ++ P G +
Sbjct: 200 TSPDTYTVENQWGGSTAPWNPGGFWM 225
Score = 37.8 bits (87), Expect = 0.011
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 35/107 (32%)
Query: 583 TSYACKCPAGYSSETCAVDID-----------------------------ECVTHNCQNG 613
T+Y + P G+ SE D V +G
Sbjct: 118 TTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDG 177
Query: 614 ARCIDGVARYSCECTPGWEGALCEKEIDE------CLSNPCMNGGQC 654
+ + G Y+ E G+ G L + + P GG
Sbjct: 178 GKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFW 224
Score = 36.6 bits (84), Expect = 0.028
Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 35/194 (18%)
Query: 708 CDCPPGYRGSRCEINIDE------CASGPCKNSGQCI----DDVNAFICNCTNTATGASM 757
+ P G+RG+ N S P + G + D N + + G ++
Sbjct: 55 GEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGGKTL 114
Query: 758 GCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYT 817
G Y +G+ ++ + +S+++ GG GV +LG
Sbjct: 115 T-------GTTT--YNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVW---VLGTR 162
Query: 818 GEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPD-------PCKDE 870
G+ I+++ + G+ ++ Y G L +
Sbjct: 163 GKQNVINVDA------KSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTA 216
Query: 871 PCQNGGTCHEDCRH 884
P GG R+
Sbjct: 217 PWNPGGFWMIGARN 230
Score = 28.5 bits (63), Expect = 9.6
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 7/75 (9%)
Query: 836 GNNGECINQPGDYKCACQFDTCGYLCNFPD-------PCKDEPCQNGGTCHEDCRHQADY 888
+ G+ + Y G L + + P Q GG R + +
Sbjct: 41 DDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNI 100
Query: 889 KCDCLPGWTGKNCTE 903
+ G
Sbjct: 101 VAVSIKSNDGGKTLT 115
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 49.4 bits (117), Expect = 4e-06
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTCGY-LCNFPDPCKDE-PCQNGGTCHED 881
C +++ C C G +C C GY L C+D C G C +
Sbjct: 2 GEENCNVNNGGCAQK--CQMIRGAVQCTCHT---GYRLTEDGRTCQDVNECAEEGYCSQG 56
Query: 882 CRHQAD-YKCDCLPGW 896
C + ++C C G+
Sbjct: 57 CTNSEGAFQCWCEAGY 72
Score = 45.9 bits (108), Expect = 5e-05
Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 9/128 (7%)
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEK---EIDECLSNP-CMNGGQCED 656
+ C +N +C C C G+ + +++EC C C +
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTN 59
Query: 657 RLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRG 716
F C C G R+ A P I P
Sbjct: 60 SEGAFQCWCEA---GYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 717 SRCEINID 724
+ ++
Sbjct: 117 NAIALDFH 124
Score = 33.2 bits (75), Expect = 0.42
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 583 TSYACKCPAGYSSE----TCAVDIDECVTHN-CQNGARCIDGVARYSCECTPGWEGALCE 637
+ C C GY TC D++EC C G C + + C C G+E
Sbjct: 22 GAVQCTCHTGYRLTEDGRTCQ-DVNECAEEGYCSQG--CTNSEGAFQCWCEAGYELRPDR 78
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNC 665
+ P + D
Sbjct: 79 RSCKALGPEPVLLFANRIDIRQVLPHRS 106
Score = 31.7 bits (71), Expect = 1.4
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQAD-YKCDCLPGWT----GKNCTEVPEY 907
+ C C + C+ +C C G+ G+ C +V E
Sbjct: 4 ENCNVNNGG----CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC 47
Score = 31.3 bits (70), Expect = 1.7
Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 4/81 (4%)
Query: 835 CGNNGEC----INQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKC 890
C G C N G ++C C+ D R ++
Sbjct: 47 CAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Query: 891 DCLPGWTGKNCTEVPEYLPSR 911
+ ++ R
Sbjct: 107 EYTLLLNNLENAIALDFHHRR 127
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 49.5 bits (118), Expect = 4e-06
Identities = 15/129 (11%), Positives = 28/129 (21%), Gaps = 21/129 (16%)
Query: 636 CEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQD 695
+ ++G + C + + ++ + CQ
Sbjct: 262 SGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSH--EACQK 319
Query: 696 TKISPYFPQGPICDCPPGYRGSRCEINIDECASGPC-KNSGQCI--DDVNAFICNCTNTA 752
C RC+ A C + G+C N +
Sbjct: 320 -------------LCTNAV---RCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGR 363
Query: 753 TGASMGCLG 761
G S L
Sbjct: 364 GGISGYTLR 372
Score = 39.4 bits (92), Expect = 0.006
Identities = 16/139 (11%), Positives = 26/139 (18%), Gaps = 14/139 (10%)
Query: 597 TCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNG-GQCE 655
+ +G C + + E L C+
Sbjct: 261 ESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTD--FLGEELDIVAAKSHEACQ 318
Query: 656 DRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR 715
C+ RC + A C G K+S I G
Sbjct: 319 K-------LCTNAV---RC-QFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGIS 367
Query: 716 GSRCEINIDECASGPCKNS 734
G + +
Sbjct: 368 GYTLRLCKMDNECTTKIKP 386
Score = 35.6 bits (82), Expect = 0.097
Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 9/78 (11%)
Query: 820 MCEIDINECELSSDMCG-----NNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN 874
+C + +E L S + + C + D +E
Sbjct: 254 LCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSS----FYHDTDFLGEELDIV 309
Query: 875 GGTCHEDCRHQADYKCDC 892
HE C+ C
Sbjct: 310 AAKSHEACQKLCTNAVRC 327
Score = 30.2 bits (68), Expect = 4.4
Identities = 12/123 (9%), Positives = 26/123 (21%), Gaps = 8/123 (6%)
Query: 578 DSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSC-----ECTPGWE 632
S + G+S ++C I + + + C
Sbjct: 265 PSTRIKKSKALS--GFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCT 322
Query: 633 GAL-CEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGA 691
A+ C+ C G + ++ G S +
Sbjct: 323 NAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTT 382
Query: 692 VCQ 694
+
Sbjct: 383 KIK 385
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 47.8 bits (113), Expect = 5e-06
Identities = 17/159 (10%), Positives = 45/159 (28%), Gaps = 14/159 (8%)
Query: 98 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 157
+++ T Q + + S Y+ + G++ V+ +
Sbjct: 38 RLAIGFSTVQKEAVLVRVDSSSGLGD------------YLELHIHQGKIGVKFNVGTDDI 85
Query: 158 SYNVGGVKLADGNNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQVLYLGGIPETV 217
+ + DG H+++ R+ ++++ + G D + L +
Sbjct: 86 AIEESNAIINDGKYHVVRFTRSGGNATLQVD--SWPVIERYPAGNNDNERLAIARQRIPY 143
Query: 218 HHHRSIRSPYQPSRSYPSGGHCTDLWRDFSCSCVRPFLG 256
R + + + +PF G
Sbjct: 144 RLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQG 182
Score = 40.1 bits (93), Expect = 0.001
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 24/168 (14%)
Query: 295 DISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPE 354
+++ T Q + + S Y+ + G++ V+ +
Sbjct: 38 RLAIGFSTVQKEAVLVRVDSSSGLGD------------YLELHIHQGKIGVKFNVGTDDI 85
Query: 355 SYNVGGVKLADGNNHLIQTI--SSTGILDVQVLYL------GGIPETVHHHRSIRSPYQP 406
+ + DG H+++ L V + G R PY+
Sbjct: 86 AIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRL 145
Query: 407 SRSYPRWATYDEMENYTTARRRYSRQTAGEKQFSPLPNFKGIIHDVQI 454
R W D+ T + + G++Q P F+G + +
Sbjct: 146 GRVVDEWLL-DKGRQLTIFNSQATIIIGGKEQGQP---FQGQLSGLYY 189
Score = 30.9 bits (69), Expect = 1.4
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 469 NGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQV 518
+ S Y+ + G++ V+ + + + DG H+++
Sbjct: 55 VDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRF 104
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 46.3 bits (110), Expect = 7e-06
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDEC 643
C +C C++ + Y+C C PG+ G CE D+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 39.0 bits (91), Expect = 0.002
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 847 DYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C LC C+D C G C E +Y C C PG+ G C
Sbjct: 106 DEHCL---KKKHALCYTA-SCQDMSCSKQGECLET---IGNYTCSCYPGFYGPEC 153
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 681 SCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDEC 726
SC D C C +T I Y C C PG+ G CE D+
Sbjct: 121 SCQDMSCSKQGECLET-IGNY-----TCSCYPGFYGPECEYVRDDD 160
Score = 35.2 bits (81), Expect = 0.039
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 635 LCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
LC C C G+C + + + C+C + G CE
Sbjct: 116 LCYTAS--CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 32.8 bits (75), Expect = 0.24
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 228 QPSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQYNFT 264
S G C + +++CSC F G C+Y
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRD 158
Score = 29.8 bits (67), Expect = 2.6
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 828 CELSSDM---CGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDE 870
C +S C GEC+ G+Y C+C G C + D+
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDDK 162
Score = 28.2 bits (63), Expect = 7.7
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 719 CEINIDECASGPCKNSGQCIDDVNAFICNC 748
C C C G+C++ + + C+C
Sbjct: 117 CYT--ASCQDMSCSKQGECLETIGNYTCSC 144
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 49.1 bits (116), Expect = 7e-06
Identities = 52/316 (16%), Positives = 79/316 (25%), Gaps = 43/316 (13%)
Query: 584 SYACKCPAGY-SSETCAVDIDECV--THNCQNGARCIDGVARYSCECTPGW----EGALC 636
S CP + + C+ C N C DG + C + + + C
Sbjct: 135 SDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 194
Query: 637 EKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDT 696
CLS C++ D EE + C+D C
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNC--------- 245
Query: 697 KISPYFPQGPICDCPPGYRGSRCEINIDECASGPCK-NSGQCIDDVNAFICNCTNTATGA 755
I DC C K +SG+CI +CN
Sbjct: 246 -IHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITL--DKVCNMAR----- 297
Query: 756 SMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILG 815
C ++ E + T C + S L
Sbjct: 298 --DC-----------RDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL- 343
Query: 816 YTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNG 875
+ DI+EC+ D + C+N G YKC C+
Sbjct: 344 -VAQRRCEDIDECQ---DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 399
Query: 876 GTCHEDCRHQADYKCD 891
T + R + +
Sbjct: 400 FTNRHEVRKMTLDRSE 415
Score = 46.0 bits (108), Expect = 6e-05
Identities = 63/366 (17%), Positives = 98/366 (26%), Gaps = 71/366 (19%)
Query: 585 YACKCPAGY--------SSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALC 636
+ + + C + +C C + DG EC G + +
Sbjct: 3 WKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGS----AECQDGSDESQE 58
Query: 637 EKEIDECLSN--PCMNG-GQCEDRLAGFVCN----CS----EEYVGERCESLRQISCADQ 685
C S C +C + + C+ C E+ + S + C D
Sbjct: 59 TCLSVTCKSGDFSCGGRVNRCIPQ--FWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG 116
Query: 686 PCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINID-----ECASGPCKNSGQ---- 736
C IS F DC G + C + +C S C
Sbjct: 117 KC----------ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDN 166
Query: 737 ---CID--DVNAFICNCTNTATGASMGCL-GEVRLGDLLLPYFTWEQLGYTDTLSCPECF 790
C D D C G S C E + +W G D C +
Sbjct: 167 DPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD---CKDKS 223
Query: 791 SLDSGPGGPGLADSGPGVQTTPILGY------------TGEMCEIDINECELSSDMCGNN 838
++ D I G + E+ +++ CE + ++
Sbjct: 224 DEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS 283
Query: 839 GECINQPGDYKCACQFDTCGYL---CNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPG 895
GECI D C D C + NGG H + Y+C C G
Sbjct: 284 GECI--TLDKVCNMARD-CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 340
Query: 896 WTGKNC 901
+
Sbjct: 341 FQLVAQ 346
Score = 37.5 bits (86), Expect = 0.026
Identities = 36/213 (16%), Positives = 53/213 (24%), Gaps = 16/213 (7%)
Query: 591 AGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCM- 649
+ TC D +C NC +G+R D +C + C N
Sbjct: 226 ENCAVATCRPDEFQCSDGNCIHGSRQCDRE----YDCKDMSDEVGCVNVTLCEGPNKFKC 281
Query: 650 NGGQCEDRLAGFVCNCSEEYVG---ERCESLRQISCADQPCYFGAVCQDTKISPYF--PQ 704
+ G+C VCN + + E + C D VC D KI P
Sbjct: 282 HSGECIT--LDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPD 339
Query: 705 GPICD----CPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCL 760
G C + C + QC + A G+
Sbjct: 340 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 399
Query: 761 GEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLD 793
R + E L +
Sbjct: 400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 432
Score = 34.8 bits (79), Expect = 0.16
Identities = 25/161 (15%), Positives = 43/161 (26%), Gaps = 9/161 (5%)
Query: 589 CPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDEC-LSNP 647
C +EC+ +N C D Y C C G++ + D +P
Sbjct: 299 CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP 358
Query: 648 CMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPI 707
C + G+ C C E G + + + A + + +
Sbjct: 359 DTCSQLCVNLEGGYKCQCEE---GFQLDPHTKACKAVGSIAYLFFTNR-----HEVRKMT 410
Query: 708 CDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNC 748
D N+ + N D IC+
Sbjct: 411 LDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 451
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 42.5 bits (100), Expect = 1e-05
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 642 ECLSNPCMNGGQCE--DRLAGFVCNCSEEYVGERCE 675
C+NGG C + L + CNC Y G+RC+
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 37.5 bits (87), Expect = 8e-04
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 681 SCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720
S D C G VC + C+C GY G RC+
Sbjct: 8 SSYDGYCLNGGVCMHIESLD----SYTCNCVIGYSGDRCQ 43
Score = 35.6 bits (82), Expect = 0.004
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
D C NGG C Y C+C+ G++G C
Sbjct: 8 SSYDGYCLNGGVCM-HIESLDSYTCNCVIGYSGDRC 42
Score = 30.9 bits (70), Expect = 0.15
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 610 CQNGARC--IDGVARYSCECTPGWEGALCE 637
C NG C I+ + Y+C C G+ G C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 28.2 bits (63), Expect = 1.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 725 ECASGPCKNSGQC--IDDVNAFICNCTNTATG 754
G C N G C I+ ++++ CNC +G
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSG 39
Score = 27.1 bits (60), Expect = 3.5
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 236 GGHCTDL--WRDFSCSCVRPFLGHTCQY 261
GG C + ++C+CV + G CQ
Sbjct: 17 GGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 46.8 bits (110), Expect = 2e-05
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 603 DECVTHNCQNGARCIDGVARYSCECTPGWE--GALCEKEIDECLSNPCMNGGQCEDRLAG 660
+EC+ +N C D Y C C G++ ++IDEC +P C + G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGG 59
Query: 661 FVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720
+ C C E + + + + A + ++ +
Sbjct: 60 YKCQCEEGF---QLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 721 INIDECASGPCKNSGQCIDDVNAFICNC 748
++ + N D IC+
Sbjct: 117 LDTE-----VASNRIYWSDLSQRMICST 139
Score = 46.4 bits (109), Expect = 4e-05
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 826 NECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDE-PCQNGGTCHEDCR- 883
NEC + G + C + Y+C C G+ C+D CQ+ TC + C
Sbjct: 1 NEC--LDNNGGCSHVCNDLKIGYECLCPD---GFQLVAQRRCEDIDECQDPDTCSQLCVN 55
Query: 884 HQADYKCDCLPGWT 897
+ YKC C G+
Sbjct: 56 LEGGYKCQCEEGFQ 69
Score = 44.8 bits (105), Expect = 9e-05
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 11/112 (9%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR--GSRCEINIDECAS-GPCKNSGQCI 738
C D VC D G C CP G++ R +IDEC C S C+
Sbjct: 3 CLDNNGGCSHVCNDL------KIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCV 54
Query: 739 DDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECF 790
+ + C C + L + ++
Sbjct: 55 NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 106
Score = 37.5 bits (86), Expect = 0.020
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 6/111 (5%)
Query: 583 TSYACKCPAGY--SSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGAL---CE 637
Y C CP G+ ++ DIDEC C++ Y C+C G++
Sbjct: 19 IGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 77
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCY 688
K + N + S +L +++ +
Sbjct: 78 KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYW 128
Score = 34.8 bits (79), Expect = 0.12
Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 816 YTGEMCEIDINECELSSDMCGNNGECINQPGDYKCAC----QFDTCGYLCNFPDPCKDEP 871
+ DI+EC+ D C C+N G YKC C Q D C
Sbjct: 31 LVAQRRCEDIDECQ-DPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 87
Query: 872 CQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVPEYLPSRVVDLALLII 920
N + +++Y DL+ +I
Sbjct: 88 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMI 136
Score = 30.6 bits (68), Expect = 2.5
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 12/54 (22%)
Query: 861 CNFPDPCKDEPCQNGGTCHEDC-------RHQADYKCDCLPGWT----GKNCTE 903
+ C+ NGG C C H + C C G ++C
Sbjct: 346 PRGVNWCERTTLSNGG-CQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 398
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 45.4 bits (107), Expect = 3e-05
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 815 GYTGEMCEIDINE-----------CELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF 863
GY G+ CE + +S +C G+C+ +C C +
Sbjct: 114 GYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKLIY 169
Query: 864 PDPCKDEPCQNGGTCHEDCRHQ-----ADYKCDCLPGWTGKNC 901
C+ + + C KC C PG+ G C
Sbjct: 170 GQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC 212
Score = 38.1 bits (88), Expect = 0.007
Identities = 18/100 (18%), Positives = 25/100 (25%), Gaps = 19/100 (19%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGW------EGALCEKEI 640
C+ S E + + C C+ G C C G CE +
Sbjct: 122 CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQ----CLCHTSDVPGKLIYGQYCECDT 177
Query: 641 DEC-----LSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
C G C C C + G C+
Sbjct: 178 INCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSACQ 213
Score = 33.0 bits (75), Expect = 0.32
Identities = 32/161 (19%), Positives = 38/161 (23%), Gaps = 56/161 (34%)
Query: 707 ICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLG 766
IC C GY G CE + G C D N+ IC+ C
Sbjct: 108 ICRCDTGYIGKNCE--CQTQGRSSQELEGSCRKDNNSIICSGLGD-------C------- 151
Query: 767 DLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEIDIN 826
C +C S G G+ CE D
Sbjct: 152 ------------------VCGQCLCHTSDVPGK---------------LIYGQYCECDTI 178
Query: 827 ECELSSDM---CGNNGECINQPGDYKCACQFDTCGYLCNFP 864
CE + G C KC C G C
Sbjct: 179 NCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQHH 215
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 46.8 bits (111), Expect = 3e-05
Identities = 16/141 (11%), Positives = 30/141 (21%), Gaps = 24/141 (17%)
Query: 608 HNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSE 667
C A + + + N C N E+ + +V
Sbjct: 34 LPCLAWASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPG 83
Query: 668 EYVG---ERCESLRQISCADQPCYF------GAVCQDTKISPYFPQG-----PICDCPPG 713
++ CE + D GA + + P C P
Sbjct: 84 DFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPL 143
Query: 714 YRGSRCEINIDECASGPCKNS 734
+ E + +
Sbjct: 144 FEKKSLEDKTERELLESYIDG 164
Score = 36.8 bits (85), Expect = 0.037
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 7/119 (5%)
Query: 600 VDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLA 659
+ V + C+N +GV Y + E G ED
Sbjct: 54 NSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNY--CEEAVEEETGDGLDEDSDR 111
Query: 660 GFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSR 718
+ + + + C + + + + Y R
Sbjct: 112 AIEGATATSEY-QTFFNPATFGSGEADCGLRPLFEKKSLED----KTERELLESYIDGR 165
Score = 33.7 bits (77), Expect = 0.32
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 830 LSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYK 889
L + C N Y D N+ + +E G + R
Sbjct: 59 LVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEET-GDGLDEDSDRAIEGAT 117
Query: 890 CDC 892
Sbjct: 118 ATS 120
Score = 31.8 bits (72), Expect = 1.1
Identities = 5/53 (9%), Positives = 11/53 (20%), Gaps = 3/53 (5%)
Query: 850 CACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCT 902
+ + N + C+N E Y + +
Sbjct: 42 AQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVW---CYVAGKPGDFGYCDLN 91
Score = 29.8 bits (67), Expect = 4.2
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 724 DECASGPCKNSGQCIDDVNAFICNC 748
+ C+N + V ++
Sbjct: 57 VQLVENFCRNPDGDEEGVWCYVAGK 81
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 46.3 bits (109), Expect = 4e-05
Identities = 53/329 (16%), Positives = 86/329 (26%), Gaps = 40/329 (12%)
Query: 596 ETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSN--PCMNG-G 652
+ C + +C C + DG EC G + + C S C
Sbjct: 4 DRCERNEFQCQDGKCISYKWVCDGS----AECQDGSDESQETCLSVTCKSGDFSCGGRVN 59
Query: 653 QCEDRLAGFVCNCS--------EEYVGERCESLRQISCADQPCYFGAVCQDTKI----SP 700
+C + + C+ E+ + S + C D C D+
Sbjct: 60 RCIPQ--FWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 117
Query: 701 YFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGC- 759
P+ C P +C + C N C D + + C
Sbjct: 118 DEASCPVLTCGPASF--QCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP 175
Query: 760 --LGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYT 817
E + +W G D C + ++ D I G
Sbjct: 176 CSAFEFHCLSGECIHSSWRCDGGPD---CKDKSDEENCAVATCRPDEFQCSDGNCIHGS- 231
Query: 818 GEMCEIDINECELSSDM--CGNNGECINQPGDYKCACQFDTC---GYLCNFPDPCKDEPC 872
C+ +C+ SD C N C G K C C +CN C+D
Sbjct: 232 -RQCD-REYDCKDMSDEVGCVNVTLC---EGPNKFKCHSGECITLDKVCNMARDCRDWSD 286
Query: 873 QNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
+ C + + C +
Sbjct: 287 EPIKECGTNECLDNNGGCSHVCNDLKIGY 315
Score = 43.6 bits (102), Expect = 3e-04
Identities = 37/223 (16%), Positives = 54/223 (24%), Gaps = 27/223 (12%)
Query: 589 CPAGYSSETCAVDIDECVTHNCQNGARCIDGVAR--YSCECTPGWEGALCEKEIDECLSN 646
C E CAV C +G CI G + +C + C N
Sbjct: 201 CKDKSDEENCAVATCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN 259
Query: 647 PCM-NGGQCEDRLAGFVCNCSEEYVG---ERCESLRQISCADQPCYFGAVCQDTKISPYF 702
+ G+C VCN + + E + C D VC D
Sbjct: 260 KFKCHSGECITL--DKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDL------ 311
Query: 703 PQGPICDCPPGYR------------GSRCEINIDECASGPCKNSGQCIDDVNAFICNCTN 750
G C CP G++ + C + QC +
Sbjct: 312 KIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 371
Query: 751 TATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLD 793
A G+ R + E L +
Sbjct: 372 KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 414
Score = 43.6 bits (102), Expect = 3e-04
Identities = 48/322 (14%), Positives = 77/322 (23%), Gaps = 47/322 (14%)
Query: 589 CPAGYSSETCAVDIDECVTHNCQNGARCIDGVAR--YSCECTPGWEGALCEKEIDECLSN 646
C G + C C +G +CI +C G + A C S
Sbjct: 74 CDNGSDEQGCPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASF 132
Query: 647 PCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYF---- 702
C N C +L + C+ + E ++ + C +
Sbjct: 133 QC-NSSTCIPQL--WACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECI 189
Query: 703 PQGPICD----CPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGAS-- 756
CD C C + C + G CI + C+ S
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSD-GNCIH--GSRQCDREYDCKDMSDE 246
Query: 757 MGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGY 816
+GC+ + C + D
Sbjct: 247 VGCVNVTLCEG-------------PNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE-- 291
Query: 817 TGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKD--EPCQN 874
E + G + C + Y+C C G+ C+D E
Sbjct: 292 --------CGTNECLDNNGGCSHVCNDLKIGYECLCPD---GFQLVAQRRCEDIDECQDP 340
Query: 875 GGTCHEDCRHQADYKCDCLPGW 896
+ YKC C G+
Sbjct: 341 DTCSQLCVNLEGGYKCQCEEGF 362
Score = 41.3 bits (96), Expect = 0.002
Identities = 35/210 (16%), Positives = 48/210 (22%), Gaps = 37/210 (17%)
Query: 576 PHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGAL 635
SD + C S C C N C DG + C +
Sbjct: 114 LDGSDEASCPVLTCGPA--SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQG 171
Query: 636 ----CEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFG- 690
C CLS C++ D EE + C+D C G
Sbjct: 172 DSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGS 231
Query: 691 ---------------AVCQDTKISPY-----------FPQGPIC----DCPPGYRGSRCE 720
C + + +C DC E
Sbjct: 232 RQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 291
Query: 721 INIDECASGPCKNSGQCIDDVNAFICNCTN 750
+EC S C D + C C +
Sbjct: 292 CGTNECLDNNGGCSHVCNDLKIGYECLCPD 321
Score = 39.4 bits (91), Expect = 0.006
Identities = 59/338 (17%), Positives = 89/338 (26%), Gaps = 59/338 (17%)
Query: 578 DSDPLTSYACKCPAGYSSETCAVDIDECV--THNCQNGARCIDGVARYSCECTPGWEGAL 635
D T + C +G +C ++ C+ C C +G C
Sbjct: 36 DESQETCLSVTCKSGDF--SCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKT------ 87
Query: 636 CEKEIDECLSNPCMNGGQ-------CEDRLAGFVCNCSEEYVGE---RCESLRQISCADQ 685
C ++ C C++ C D +C G +C S I
Sbjct: 88 CSQDEFRCHDGKCISRQFVCDSDRDCLD--GSDEASCPVLTCGPASFQCNSSTCIP-QLW 144
Query: 686 PCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFI 745
C C+D S +PQ S C C SG C +S
Sbjct: 145 ACDNDPDCEDG--SDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWR-------- 194
Query: 746 CNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSG 805
C G D D C + + D
Sbjct: 195 -------------CDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCK 241
Query: 806 PGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPD 865
+ E+ +++ CE + ++GECI D C D +
Sbjct: 242 DM---------SDEVGCVNVTLCEGPNKFKCHSGECI--TLDKVCNMARDCRDWSDEPIK 290
Query: 866 PCKDEPC--QNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C C NGG H + Y+C C G+
Sbjct: 291 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 328
Score = 32.5 bits (73), Expect = 0.74
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 11/152 (7%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSN 646
C + + +C + C + + +C + + E +ECL N
Sbjct: 249 CVNV----TLCEGPNKFKCHSGECITLDKVCNMA----RDCRDWSDEPIKECGTNECLDN 300
Query: 647 PCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGP 706
C D G+ C C + G + + R+ D+ Q +
Sbjct: 301 NGGCSHVCNDLKIGYECLCPD---GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 357
Query: 707 ICDCPPGYRGSRCEINIDECASGPCKNSGQCI 738
+ ++ + A N +
Sbjct: 358 CEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR 389
Score = 30.5 bits (68), Expect = 3.5
Identities = 42/240 (17%), Positives = 69/240 (28%), Gaps = 37/240 (15%)
Query: 670 VGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASG 729
VG+RCE + C D C IS + +C G S+ C SG
Sbjct: 2 VGDRCER-NEFQCQDGKC----------ISYKWVCDGSAECQDGSDESQETCLSVTCKSG 50
Query: 730 P---CKNSGQCIDDVNAFICNCTNTATGAS--MGCLGEVRLGDLLLPYFTWEQLGYTDTL 784
+CI + C+ S GC + D
Sbjct: 51 DFSCGGRVNRCIP--QFWRCDGQVDCDNGSDEQGC---------------PPKTCSQDEF 93
Query: 785 SCPECFSLDSGPGGPGLADSGPG--VQTTPILGYTGEMCEIDINECELSSDMCGNNGECI 842
C + + D G + P+L + + + C C N+ +C
Sbjct: 94 RCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCE 153
Query: 843 NQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCT 902
+ ++ C+ + P + C +G H + D DC +NC
Sbjct: 154 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS--SWRCDGGPDCKDKSDEENCA 211
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 40.6 bits (95), Expect = 6e-05
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 637 EKEIDECLSNPCMNGGQCE--DRLAGFVCNCSEEYVGERCE 675
+ E C++ G C + L + CNC Y+GERC+
Sbjct: 3 DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 32.9 bits (75), Expect = 0.035
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 681 SCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720
D C VC + C+C GY G RC+
Sbjct: 8 LSHDGYCLHDGVCMYIEAL----DKYACNCVVGYIGERCQ 43
Score = 31.3 bits (71), Expect = 0.14
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 862 NFPDPCKDE---PCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
N C C + G C Y C+C+ G+ G+ C
Sbjct: 1 NSDSECPLSHDGYCLHDGVC-MYIEALDKYACNCVVGYIGERC 42
Score = 30.6 bits (69), Expect = 0.20
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 610 CQNGARC--IDGVARYSCECTPGWEGALCE 637
C + C I+ + +Y+C C G+ G C+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 26.3 bits (58), Expect = 8.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 724 DECASGPCKNSGQC--IDDVNAFICNCTNTATG 754
G C + G C I+ ++ + CNC G
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIG 39
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 42.1 bits (99), Expect = 2e-04
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 602 IDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEK 638
C +C C++ + Y+C+C PG+ G CE+
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 41.7 bits (98), Expect = 2e-04
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 847 DYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEV 904
D +C+ + LC C + C G C E + Y C C PG++G C ++
Sbjct: 106 DERCSKKK---LALCYTA-ACTNTSCSGHGECVETINN---YTCKCDPGFSGLKCEQI 156
Score = 35.5 bits (82), Expect = 0.027
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 633 GALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
ALC C + C G+C + + + C C + G +CE
Sbjct: 114 LALCYT--AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 32.4 bits (74), Expect = 0.30
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 12/49 (24%)
Query: 684 DQPCY--FGAVCQDTKISPYFPQGP----------ICDCPPGYRGSRCE 720
D+ C A+C + G C C PG+ G +CE
Sbjct: 106 DERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 31.3 bits (71), Expect = 0.71
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 226 PYQPSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQY 261
+ S G C + +++C C F G C+
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 29.7 bits (67), Expect = 2.5
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 821 CEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC 861
C C +GEC+ +Y C C G C
Sbjct: 117 CYTAACTN----TSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 29.3 bits (66), Expect = 3.3
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 719 CEINIDECASGPCKNSGQCIDDVNAFICNC 748
C C + C G+C++ +N + C C
Sbjct: 117 CYT--AACTNTSCSGHGECVETINNYTCKC 144
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 41.8 bits (97), Expect = 3e-04
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 20/98 (20%)
Query: 804 SGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF 863
S V + G E ++ + P +
Sbjct: 101 SVVQVGFPCLGXQDGVAAF----EVDVIVM-NSEGNTILXTPQNAIFFKTCQQA------ 149
Query: 864 PDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
C C+NGG C+ C+C G+ G +C
Sbjct: 150 --EC-PGGCRNGGFCN------ERRICECPDGFHGPHC 178
Score = 39.5 bits (91), Expect = 0.002
Identities = 15/94 (15%), Positives = 19/94 (20%), Gaps = 18/94 (19%)
Query: 584 SYACKCPAGYSSETCAVDIDEC-VTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDE 642
C E V G + T
Sbjct: 104 QVGFPCLGXQDGVAA----FEVDVIVMNSEGNTILXTPQNAIFFKTC----------QQA 149
Query: 643 CLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCES 676
C NGG C +C C + + G CE
Sbjct: 150 ECPGGCRNGGFC---NERRICECPDGFHGPHCEG 180
Score = 36.0 bits (82), Expect = 0.027
Identities = 17/118 (14%), Positives = 28/118 (23%), Gaps = 23/118 (19%)
Query: 603 DECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFV 662
D V V + C +G + + G +
Sbjct: 85 DPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEV---DVIVMNSEGNTILXTPQNAI 141
Query: 663 CNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720
+ + + C G C + IC+CP G+ G CE
Sbjct: 142 FFKTCQQ-----------AECPGGCRNGGFCNER---------RICECPDGFHGPHCE 179
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 42.4 bits (99), Expect = 6e-04
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLP-GWTGKNCT 902
+PC PCQN G C Q YKCDC G+ G+NCT
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT 38
Score = 33.6 bits (76), Expect = 0.36
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 603 DECVTHNCQNGARCID-GVARYSCECTP-GWEGALCEK 638
+ C ++ CQN C+ G +Y C+CT G+ G C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 31.6 bits (71), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 724 DECASGPCKNSGQCID-DVNAFICNCTNTA 752
+ C S PC+N G+C+ + + C+CT T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTG 31
Score = 31.2 bits (70), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 641 DECLSNPCMNGGQC-EDRLAGFVCNCSE-EYVGERCES 676
+ C SNPC N G+C + C+C+ + GE C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 37.8 bits (87), Expect = 7e-04
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 641 DECLSNPCMNGGQC-----EDRLAGFVCNCSEEYVGERCE 675
E C+NGG+C + ++C C + G RC
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 34.7 bits (79), Expect = 0.011
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 865 DPCKDEPCQNGGTCH--EDCRHQADYKCDCLPGWTGKNCTEVPEYLPSRVVD 914
+ C NGG C +D + + Y C C PG+TG CT E +P +V +
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT---ENVPMKVQN 55
Score = 30.9 bits (69), Expect = 0.25
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 603 DECVTHNCQNGARC-----IDGVARYSCECTPGWEGALCE 637
E C NG C + +RY C+C PG+ GA C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 30.9 bits (69), Expect = 0.26
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720
C G C K P +C C PG+ G+RC
Sbjct: 9 KEKTFCVNGGECFMVKDLSN-PSRYLCKCQPGFTGARCT 46
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 42.3 bits (99), Expect = 8e-04
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLP-GWTGKNCTEVPEYLP 909
+PC PCQ+ G C + Y+CDC G++G NCT +PE
Sbjct: 3 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNCT-IPEIWT 45
Score = 32.3 bits (73), Expect = 0.80
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 602 IDECVTHNCQNGARCID-GVARYSCECTP-GWEGALCEK 638
++ C + CQ+ C+ G+ RY C+CT G+ G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 31.5 bits (71), Expect = 1.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 640 IDECLSNPCMNGGQC-EDRLAGFVCNCSE-EYVGERCES 676
++ C PC + G C L + C+C+ Y G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 31.5 bits (71), Expect = 1.7
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 723 IDECASGPCKNSGQCID-DVNAFICNCTNTA 752
++ C PC++ G C+ ++ + C+CT T
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTG 32
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 37.6 bits (87), Expect = 0.001
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 641 DECLSNPCMNGGQC----EDRLAGFVCNCSEEYVGERCE 675
+ + C+N C L + C C+ ++G+RCE
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 33.7 bits (77), Expect = 0.019
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 864 PDPCKDEPCQNGGTC-HEDCRHQADYKCDCLPGWTGKNC 901
P+ C N C Y C+C G+ G+ C
Sbjct: 8 PETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 33.0 bits (75), Expect = 0.033
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 681 SCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720
+ C A C KI+ C+C G+ G RCE
Sbjct: 10 TFDAWYCLNDAHCFAVKIAD--LPVYSCECAIGFMGQRCE 47
Score = 31.0 bits (70), Expect = 0.20
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 610 CQNGARC----IDGVARYSCECTPGWEGALCE 637
C N A C I + YSCEC G+ G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 26.4 bits (58), Expect = 6.8
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 236 GGHCTDL----WRDFSCSCVRPFLGHTCQY 261
HC + +SC C F+G C+Y
Sbjct: 19 DAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 40.0 bits (93), Expect = 0.001
Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQ- 873
G G C DI + N C +Q G C + CG C D+PC
Sbjct: 77 GCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGF--CGLGSEFCGGGCQSGACSTDKPCGK 134
Query: 874 --NGGTCHEDCRHQADYKCDCLPGWTGKNCT 902
G C + C PG+ G C
Sbjct: 135 DAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQ 165
Score = 33.8 bits (77), Expect = 0.12
Identities = 26/151 (17%), Positives = 37/151 (24%), Gaps = 19/151 (12%)
Query: 603 DECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLS--NPCMNGGQCEDRL-- 658
++ C N C C + G C+ G C +
Sbjct: 5 EQGSNMECPNNLCCSQ---YGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCC 61
Query: 659 -AGFVCNCSEEYVGERCESLR-QISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRG 716
C EY G C+ + G +C +C G+ G
Sbjct: 62 SQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCP----------NNLCCSQWGFCG 111
Query: 717 SRCEINIDECASGPCKNSGQCIDDVNAFICN 747
E C SG C C D +C
Sbjct: 112 LGSEFCGGGCQSGACSTDKPCGKDAGGRVCT 142
Score = 32.3 bits (73), Expect = 0.39
Identities = 16/74 (21%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 835 CGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHED--CRHQADYKCDC 892
C G C CQ C C N C + C A+Y C
Sbjct: 18 CSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEY---C 74
Query: 893 LPGWTGKNCTEVPE 906
G G C +
Sbjct: 75 GAGCQGGPCRADIK 88
Score = 32.3 bits (73), Expect = 0.41
Identities = 33/171 (19%), Positives = 43/171 (25%), Gaps = 20/171 (11%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEK-----EID 641
+CP C C G C +G S C GA C +
Sbjct: 10 MECPNN----LCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYG 65
Query: 642 ECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQIS----CADQPCYFGAVCQDTK 697
C G C+ C + G+ C + S C + G CQ
Sbjct: 66 YCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGA 125
Query: 698 ISPYFPQGPICDCPPGYRGSRCEINIDECASGPCK-NSGQCIDDVNAFICN 747
S C G C N G C G C + C+
Sbjct: 126 CS------TDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCD 170
Score = 30.4 bits (68), Expect = 1.6
Identities = 12/67 (17%), Positives = 14/67 (20%), Gaps = 6/67 (8%)
Query: 835 CGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLP 894
C G C CQ C + C N C C
Sbjct: 61 CSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCC------SQWGFCGLGS 114
Query: 895 GWTGKNC 901
+ G C
Sbjct: 115 EFCGGGC 121
Score = 30.0 bits (67), Expect = 2.3
Identities = 23/119 (19%), Positives = 28/119 (23%), Gaps = 17/119 (14%)
Query: 575 SPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCE-----CTP 629
S T+ C GY C C+ +C C
Sbjct: 48 SQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQW 107
Query: 630 GWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCN------------CSEEYVGERCES 676
G+ G E C S C C G VC Y G C+S
Sbjct: 108 GFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQS 166
Score = 28.5 bits (63), Expect = 7.1
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF-PDPCKDEPCQ 873
Y G+ C+ C N +C Q+ CG+ + C+ PC+
Sbjct: 29 DYCGKGCQNGACWTSKRCGSQAGGATCTNN----QCCSQYGYCGFGAEYCGAGCQGGPCR 84
Query: 874 NGGTCHEDCRHQ--ADYKCDCLPGWTGKNC 901
C + + C G+ G
Sbjct: 85 ADIKCGSQAGGKLCPNNLCCSQWGFCGLGS 114
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 40.4 bits (94), Expect = 0.003
Identities = 29/199 (14%), Positives = 45/199 (22%), Gaps = 35/199 (17%)
Query: 583 TSYACKCPAGYSSETCAVDIDECVTHNCQ------------NGARCIDGVARYSCECTPG 630
+Y S TC + + + N R DG C T
Sbjct: 262 ENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNS 321
Query: 631 ---WEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGE----RCESLRQISCA 683
WE +I C S+P + Y G+ R S +
Sbjct: 322 QVRWE----YCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGTS--STTTT 375
Query: 684 DQPCYFGAVCQDTKISPYFPQGPI--------CDCPPGYRGSRCEINIDECASGPCKNSG 735
+ C + P+ C P +G C C N
Sbjct: 376 GKKCQSWS-SMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYC-NLK 433
Query: 736 QCIDDVNAFICNCTNTATG 754
+C + +
Sbjct: 434 KCSGTEASVVAPPPVVLLP 452
Score = 30.4 bits (68), Expect = 3.4
Identities = 47/272 (17%), Positives = 65/272 (23%), Gaps = 54/272 (19%)
Query: 637 EKEIDECLSNPCMNGGQC-EDRLAGFVCNCSEEYVGERCES---------LRQISCADQP 686
EK D C C +C + S+ G C++ S
Sbjct: 151 EKRYDYCDILECEE--ECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNK 208
Query: 687 CYFGAVCQDTKISPYFPQGPICDCP-PGYRGSRCEINIDECASGPCKNSGQCIDDV-NAF 744
C+ +P P C P R C+I + QC+ +
Sbjct: 209 NLKKNYCR----NPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENY 264
Query: 745 ICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSG-------PG 797
N T +G + C W PE F + P
Sbjct: 265 RGNVAVTVSGHT--CQ-------------HWSAQTPHTHNRTPENFPCKNLDENYCRNPD 309
Query: 798 GPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQ---- 853
G P TT E C I C S P + Q
Sbjct: 310 G----KRAPWCHTTN-SQVRWEYC--KIPSC--DSSPVSTEQLAPTAPPELTPVVQDCYH 360
Query: 854 FDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQ 885
D Y + CQ+ + RHQ
Sbjct: 361 GDGQSYRGTSSTTTTGKKCQS-WSSMTPHRHQ 391
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 39.7 bits (92), Expect = 0.003
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQ--FDTCGYLCNFPDPCKDEPCQNGGTCHED 881
C + C + EC + + C C + G C + P + G
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQC----VAEGSPQRVNGKVKGR 59
Query: 882 C 882
Sbjct: 60 I 60
Score = 31.3 bits (70), Expect = 1.5
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 600 VDIDECV--THNCQNGARCIDGVARYSCECTPG--WEGALCEKEIDECLSNPCMNG 651
+ C H C A C D + C C G C E N + G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKG 58
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 39.9 bits (92), Expect = 0.004
Identities = 25/154 (16%), Positives = 35/154 (22%), Gaps = 21/154 (13%)
Query: 601 DIDECVTHNCQNGARCIDGVA-----RYSCECTPGWEGALCEKEIDECLSNPCMNGGQCE 655
DI C A D R C C G C++ C +
Sbjct: 259 DISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDR----CCPGFNQQPWKPA 314
Query: 656 DRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR 715
+ C + C P + + Y G DC
Sbjct: 315 TTDSANECQSCNCHGHAY-------DCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTT 367
Query: 716 GSRCEINIDECASGPCKNSGQCIDDVNAFI-CNC 748
G CE C G + Q +D +
Sbjct: 368 GINCE----RCLPGFFRAPDQPLDSPHVCRPAAA 397
Score = 31.4 bits (70), Expect = 1.6
Identities = 15/100 (15%), Positives = 21/100 (21%), Gaps = 4/100 (4%)
Query: 576 PHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGAL 635
D C C +C D C Q + + C+ A
Sbjct: 277 AKDPLDPFRLQCACQHNTCGGSC----DRCCPGFNQQPWKPATTDSANECQSCNCHGHAY 332
Query: 636 CEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
E + G +C G CE
Sbjct: 333 DCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCE 372
Score = 29.8 bits (66), Expect = 4.8
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 16/91 (17%)
Query: 815 GYTGEMCEIDI---NECELSSDMCGNNGECINQPGDYKCA-CQFDTCGYLCNFPDPCKDE 870
G C+ N+ + EC + C +D +D
Sbjct: 293 NTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRRE-ASQNQDN 351
Query: 871 PCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
Q GG C DC TG NC
Sbjct: 352 VYQGGGVC-----------LDCQHHTTGINC 371
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 39.6 bits (92), Expect = 0.004
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 610 CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEY 669
C+NG G C C+PGWEG C +C C +GG C + C C + Y
Sbjct: 399 CRNGYCTPTG----KCCCSPGWEGDFC--RTAKC-EPACRHGGVC---VRPNKCLCKKGY 448
Query: 670 VGERCESL 677
+G +CE +
Sbjct: 449 LGPQCEQV 456
Score = 33.0 bits (75), Expect = 0.56
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 838 NGECINQPGDYKCACQFDTCGYLCNFPDPCKDEP-CQNGGTCHEDCRHQADYKCDCLPGW 896
NG C KC C G C K EP C++GG C KC C G+
Sbjct: 401 NGYCTPTG---KCCCSPGWEGDFCRT---AKCEPACRHGGVCVRP------NKCLCKKGY 448
Query: 897 TGKNCTEV 904
G C +V
Sbjct: 449 LGPQCEQV 456
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 37.9 bits (88), Expect = 0.006
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 605 CVTHNCQNGARCIDGVARYSCECTPGWEGALCE 637
C +C C++ + Y+C C G+ G C+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 37.5 bits (87), Expect = 0.007
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 857 CGYLCNF---PDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEV 904
C L C+ C G C E + Y C+C G+ G C V
Sbjct: 109 CHKLKAALCYTASCQPWSCSGHGECVEIINN---YTCNCDVGYYGPQCQFV 156
Score = 36.3 bits (84), Expect = 0.017
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 623 YSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCE 675
+C LC C C G+C + + + CNC Y G +C+
Sbjct: 107 DACHKLKAA---LCYT--ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 32.1 bits (73), Expect = 0.51
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 684 DQPC--YFGAVCQDTKISPYFPQGP----------ICDCPPGYRGSRCEINIDEC 726
D C A+C P+ G C+C GY G +C+ +
Sbjct: 106 DDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ-FVQVD 159
Score = 30.5 bits (69), Expect = 1.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 232 SYPSGGHCTDLWRDFSCSCVRPFLGHTCQY 261
S G C ++ +++C+C + G CQ+
Sbjct: 126 SCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
Score = 29.0 bits (65), Expect = 4.1
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 828 CELSSDM---CGNNGECINQPGDYKCACQFDTCGYLCNFPDPCK 868
C +S C +GEC+ +Y C C G C F
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQVDP 160
Score = 28.2 bits (63), Expect = 8.1
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 719 CEINIDECASGPCKNSGQCIDDVNAFICNC 748
C C C G+C++ +N + CNC
Sbjct: 117 CYT--ASCQPWSCSGHGECVEIINNYTCNC 144
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 34.5 bits (79), Expect = 0.008
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 648 CMNGGQC----EDRLAGFVCNCSEEYVGERCES 676
C+N C L + C C+ ++G+RCE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 32.2 bits (73), Expect = 0.060
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 687 CYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCE 720
C A C KI+ C+C G+ G RCE
Sbjct: 16 CLNDAHCFAVKIAD--LPVYSCECAIGFMGQRCE 47
Score = 31.4 bits (71), Expect = 0.098
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 610 CQNGARC----IDGVARYSCECTPGWEGALCE-KEID 641
C N A C I + YSCEC G+ G CE KEID
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEID 52
Score = 31.0 bits (70), Expect = 0.13
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 864 PDPCKDEPCQNGGTC-HEDCRHQADYKCDCLPGWTGKNC 901
P+ C N C Y C+C G+ G+ C
Sbjct: 8 PETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 37.1 bits (86), Expect = 0.008
Identities = 38/162 (23%), Positives = 44/162 (27%), Gaps = 31/162 (19%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCE-CTPGWEGALCEKEIDECLS 645
C CP G SS E V +C G A CE C G+ G L
Sbjct: 1 CPCP-GGSSCAIVPKTKEVVCTHCP------TGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
Query: 646 NPC--------MNGGQCEDRLAGFVCNCSEEYVGERCES---------LRQISCAD-QPC 687
PC G C +RL G C G C+ L + C
Sbjct: 54 RPCQCNDNIDPNAVGNC-NRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKAC 112
Query: 688 YFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASG 729
+ S P C C P G C C G
Sbjct: 113 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC----GTCDPG 150
Score = 33.6 bits (77), Expect = 0.12
Identities = 38/218 (17%), Positives = 53/218 (24%), Gaps = 77/218 (35%)
Query: 686 PCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFI 745
PC G+ C I P + CP G G RCE C G + V
Sbjct: 2 PCPGGSSCA---IVPKTKEVVCTHCPTGTAGKRCE----LCDDGYFGDPLGSNGPVRLCR 54
Query: 746 -CNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADS 804
C C + P G +
Sbjct: 55 PCQCNDNID------------------------------------------PNAVGNCNR 72
Query: 805 GPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFP 864
G I G C+ C + G + +
Sbjct: 73 LTGECLKCIYNTAGFYCD-----------------RC--KEGFFGNPLAPNP-------A 106
Query: 865 DPCKDEPCQNGGTCHEDCR-HQADYKCDCLPGWTGKNC 901
D CK C GT + + +C CLP +G++C
Sbjct: 107 DKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC 144
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 38.3 bits (88), Expect = 0.016
Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 16/169 (9%)
Query: 586 ACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLS 645
C+ S C C++ + + + + + C+ ++CL+
Sbjct: 751 HCQLGQKQSGSEC-----ICMSPEEDCS-HHSEDLCVFDTDSNDYFTSPACKFLAEKCLN 804
Query: 646 NPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQG 705
N ++ G E S ++ SC CY C + +
Sbjct: 805 NQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSAS--TSKCVCL 862
Query: 706 PICDCPPGYRGSRC--------EINIDECASGPCKNSGQCIDDVNAFIC 746
C G C E ++ C G + + + ++ ++ C
Sbjct: 863 LPPQCFKGGNQLYCVKMGSSTSEKTLNICEVGTIRCANRKMEILHPGKC 911
Score = 32.2 bits (72), Expect = 1.0
Identities = 56/389 (14%), Positives = 87/389 (22%), Gaps = 82/389 (21%)
Query: 573 LLSPHDSDPLTSYACKCPA--GYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPG 630
L D A + + A D C C N R C C G
Sbjct: 466 LAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSG 525
Query: 631 WEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCAD-QPCYF 689
G CEK+ + SN C S + R C + P
Sbjct: 526 TYGENCEKQSPDYKSNAVDGQW---------GCWSSWSTCDATYKRSRTRECNNPAPQRG 576
Query: 690 GAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCID---------- 739
G C+ K I G + + E + C
Sbjct: 577 GKRCEGEKRQEEDCTFSIM-ENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIR 635
Query: 740 ---------DVNAFICN------------CT--NTATGASMGC------LGEVRLGDLLL 770
+ C C T + C V+ +
Sbjct: 636 NEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTIT 695
Query: 771 PYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADS-----------------GPGVQTTPI 813
P+ ++G + L+CP+ F + +S
Sbjct: 696 PFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLG 755
Query: 814 LGYTGEMCEIDINECEL---SSDMC---GNNGECINQPGDYKCACQFDTCG----YLCNF 863
+G C E + S D+C ++ + P C + C
Sbjct: 756 QKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSP---ACKFLAEKCLNNQQLHFLH 812
Query: 864 PDPCKDEPCQNGGTCHEDCRHQADYKCDC 892
C+D G + K C
Sbjct: 813 IGSCQDGRQLEWGLERTRLSSNSTKKESC 841
Score = 30.2 bits (67), Expect = 4.2
Identities = 36/262 (13%), Positives = 63/262 (24%), Gaps = 35/262 (13%)
Query: 606 VTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNC 665
V +C G + G + C W E + EC+ +
Sbjct: 647 VEISCLTGFETV-GYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGE 705
Query: 666 SEEYV---GERCESLRQISCAD------QPCYFGAVCQDTKISPYFPQGPICDCPPGYRG 716
S E G + +C + C G
Sbjct: 706 SIELTCPKGFVVAGPSRYTCQGNSWTPPISN-----SLTCEKDTLTKLKGHCQLGQKQSG 760
Query: 717 SRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWE 776
S C E + C+ D ++ + + CL +
Sbjct: 761 SECICMSPEEDCSHH-SEDLCVFDTDSNDYFTSPACKFLAEKCLNN-------------Q 806
Query: 777 QLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQT-TPILGYTGEMCEIDINECELSSDMC 835
QL + SC + L+ G L+ + ++ Y E C ++C C
Sbjct: 807 QLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCV-----C 861
Query: 836 GNNGECINQPGDYKCACQFDTC 857
+C C +
Sbjct: 862 LLPPQCFKGGNQLYCVKMGSST 883
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 36.1 bits (82), Expect = 0.019
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 673 RCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDEC 726
R + ++ C G C K YF C+CP + G CEI+ +
Sbjct: 1 RSSNELHQVPSNCDCLNGGTCVSNK---YFSNIHWCNCPKKFGGQHCEIDKSKT 51
Score = 33.0 bits (74), Expect = 0.18
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 867 CKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVPEY 907
+ C NGGTC + + C+C + G++C
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSK 50
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 33.2 bits (76), Expect = 0.024
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 823 IDINECELSSDMCGNNGE------CINQPGDYKCACQ 853
+D++EC S + + C N G Y C+C+
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCR 38
Score = 30.9 bits (70), Expect = 0.17
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 599 AVDIDECVTHNCQNGA--------RCIDGVARYSCECTPGWE 632
AVD+DEC + + C + V Y C C PG+E
Sbjct: 1 AVDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 34.3 bits (78), Expect = 0.040
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 603 DECVTHNCQNGARCI-DGVARYSCECTPGW--EGALCEKEIDECLSNPCMNGG-----QC 654
+C+ N A C C G+ G C C N NGG +C
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEEN---NGGCAPEAEC 67
Query: 655 EDRLAG-FVCNCSEEY 669
C C++E
Sbjct: 68 TMDDKKEVECKCTKEG 83
Score = 32.8 bits (74), Expect = 0.11
Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR--GSRCEINIDECAS--GPCKNSGQC 737
C D A C Y C G++ G +C C G C +C
Sbjct: 13 CIDTNVPENAACY-----RYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAEC 67
Query: 738 I-DDVNAFICNCTNTATGA 755
DD C CT +
Sbjct: 68 TMDDKKEVECKCTKEGSEP 86
Score = 30.1 bits (67), Expect = 1.0
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 587 CKCPAGYSSE--TCAVDIDECVTHN--CQNGARCI-DGVARYSCECTPGWEGAL 635
+C G+ C C +N C A C D C+CT L
Sbjct: 34 WRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPL 87
Score = 29.7 bits (66), Expect = 1.4
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 813 ILGYT--GEMCEIDINECELSSDMCGNNGECI-NQPGDYKCACQFDTCGYL 860
+LG+ G C CE ++ C EC + + +C C + L
Sbjct: 37 LLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPL 87
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 36.4 bits (83), Expect = 0.048
Identities = 15/62 (24%), Positives = 16/62 (25%), Gaps = 12/62 (19%)
Query: 583 TSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDE 642
C C + H GV C C PG G LCE E
Sbjct: 451 LHTLCDCNCSDTQPQAP--------HCSDGQGHLQCGV----CSCAPGRLGRLCESRGLE 498
Query: 643 CL 644
L
Sbjct: 499 NL 500
Score = 31.4 bits (70), Expect = 1.4
Identities = 8/45 (17%), Positives = 10/45 (22%), Gaps = 3/45 (6%)
Query: 860 LCNFPDPCKDEPCQNGGTCHEDCRHQADY---KCDCLPGWTGKNC 901
+ C Q C C PG G+ C
Sbjct: 448 IVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLC 492
Score = 31.4 bits (70), Expect = 1.6
Identities = 36/248 (14%), Positives = 61/248 (24%), Gaps = 36/248 (14%)
Query: 494 FNSTPESYNVGGVKLADGNNHLIQVGPGFDFQRIDHPFTKKHVIVCVLNAHQLSGISDQA 553
F++ + G +DG+ HL G D+P + + L+A + I
Sbjct: 273 FHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQ--VAQALSAANIQPIFAVT 330
Query: 554 DLVRCTSEAYLNLIIYISWLLSPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNG 613
+ LI + DS + SS +
Sbjct: 331 SAALPVYQELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYE 390
Query: 614 ARCIDGVARYS-----CECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGF------- 661
++C R +C + ++ R GF
Sbjct: 391 SQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHCLPEPHLLRLRALGFSEELIVE 450
Query: 662 ---VCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSR 718
+C+C+ + Q G +C C PG G
Sbjct: 451 LHTLCDCNCSDTQPQAPHC---------SDGQGHLQC---------G-VCSCAPGRLGRL 491
Query: 719 CEINIDEC 726
CE E
Sbjct: 492 CESRGLEN 499
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 35.5 bits (81), Expect = 0.081
Identities = 56/363 (15%), Positives = 88/363 (24%), Gaps = 65/363 (17%)
Query: 576 PHDSDPLTSYACKCPAGYSSETCAVDIDECVTH--NCQNGARCIDGVARYSCECTPGWEG 633
D L S CKC +S C D + C
Sbjct: 149 ISDKRKLASGECKCEDTWSGCIMGDTGYYLPKKFTQCNIEE-YHDFLNSGGGACLFNKPS 207
Query: 634 ALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPC------ 687
L + C + G +C D C ++C + C+D C
Sbjct: 208 KLLDPPE--CGNGFIETGEEC-DCGTPAECVLEGAECCKKCTLTQDSQCSDGLCCKKCKF 264
Query: 688 -YFGAVCQDTKISPYFP---QGPICDCPPGY---RGSRCEINIDECASGPCKN-SGQCID 739
G VC++ G C P G C+ C G CK QC
Sbjct: 265 QPMGTVCREAVNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGICFGGRCKTRDRQCKY 324
Query: 740 DVNAFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYT----DTLSCPE--CFSLD 793
T + C ++ + ++ + + C C ++
Sbjct: 325 -------IWGQKVTASDKYCYEKLNIEGTEKGNCGKDKDTWIQCNKRDVLCGYLLCTNIG 377
Query: 794 SGPGGPGLADS---------GPGVQTTPILGYTGEMCEI----DINECELSSDMCGNNGE 840
+ P L G + + E ++ D C M
Sbjct: 378 NIPRLGELDGEITSTLVVQQGRTLNCSGGHVKLEEDVDLGYVEDGTPCG--PQMMCLEHR 435
Query: 841 CINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKN 900
C+ C G +C+ + C N C C W G +
Sbjct: 436 CLPVASFNFSTCLSSKEGTICSG-----NGVCSNELKCV------------CNRHWIGSD 478
Query: 901 CTE 903
C
Sbjct: 479 CNT 481
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 32.3 bits (73), Expect = 0.092
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKC 850
D+NEC + C +CIN G Y C
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLC 28
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 31.3 bits (71), Expect = 0.100
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 704 QGPICDCPPGYRGSRCE 720
Q P C C GY G+RCE
Sbjct: 28 QTPSCVCDEGYIGARCE 44
Score = 29.4 bits (66), Expect = 0.56
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 648 CMNGGQCE--DRLAGFVCNCSEEYVGERCE 675
C+ G +C C C E Y+G RCE
Sbjct: 16 CIKG-RCRFVVAEQTPSCVCDEGYIGARCE 44
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 34.9 bits (80), Expect = 0.11
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 831 SSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTC-------HEDC- 882
S +C +G C+ + L P + GG ED
Sbjct: 340 SQALCSGHGRCVRRTSH--------PKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQA 391
Query: 883 RHQADYKCDCLPGWTGKNCTE 903
+ ++KC C PGW C
Sbjct: 392 QMAVEFKCRCYPGWQAPWCER 412
Score = 31.9 bits (72), Expect = 1.1
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 214 PETVHHHRSIRSPYQPSRSYPSGGHCTDLWRDFSCSCVRPFLGHTCQY 261
P + + R S + +F C C + C+
Sbjct: 365 PASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCRCYPGWQAPWCER 412
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 35.0 bits (79), Expect = 0.13
Identities = 32/292 (10%), Positives = 61/292 (20%), Gaps = 22/292 (7%)
Query: 623 YSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISC 682
+ E + + +C N ++ C V C + ++
Sbjct: 249 FQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSC-------VRACPSSKMEVEENGIKMCKP 301
Query: 683 ADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVN 742
C T + ++ N+ +G + I+ ++
Sbjct: 302 CTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAID 361
Query: 743 AFICNCTNTATGASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLA 802
N T + G L + + + L SL G+
Sbjct: 362 PEKLNVFRTVREIT-GFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSL-LILKQQGIT 419
Query: 803 DSGPGVQTTPILGYTGEMCE-----IDINECELSSDMCGNNGECINQPGDYKCACQFDTC 857
G + C + C
Sbjct: 420 SLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVC 479
Query: 858 GYLC-----NFPDPCKDEPCQN---GGTCHEDCRHQADYKCDCLPGWTGKNC 901
+LC P P + C+ G C E C + C
Sbjct: 480 NHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVEC 531
Score = 30.0 bits (66), Expect = 5.1
Identities = 40/319 (12%), Positives = 66/319 (20%), Gaps = 33/319 (10%)
Query: 588 KCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNP 647
C S V+ + + + +
Sbjct: 279 SCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKI 338
Query: 648 CMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPI 707
N + G N E E+ R + + + F
Sbjct: 339 NGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVT 398
Query: 708 CDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTN---TATGASMGCLGEVR 764
Y G I + + S + I N +I + +N T +
Sbjct: 399 IGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTIN 458
Query: 765 LGDLLLPYFTWEQLGYTDTLSCPECFSLDSGPGGPGLADSGPGVQTTPILGYTGEMCEID 824
++ E + C S + C
Sbjct: 459 QRIVIRDNRKAENCTAEGMVCNHLCSS---------------------------DGCWGP 491
Query: 825 INECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRH 884
+ LS CI Y + +C DP ++ TCH
Sbjct: 492 GPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGP--- 548
Query: 885 QADYKCDCLPGWTGKNCTE 903
D C G NC E
Sbjct: 549 GPDNCTKCSHFKDGPNCVE 567
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 30.9 bits (70), Expect = 0.14
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 704 QGPICDCPPGYRGSRCE 720
P C C GY G+RCE
Sbjct: 28 DKPACVCHSGYVGARCE 44
Score = 29.8 bits (67), Expect = 0.39
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 648 CMNGGQCE--DRLAGFVCNCSEEYVGERCE 675
C +G C + C C YVG RCE
Sbjct: 16 CFHG-TCRFLVQEDKPACVCHSGYVGARCE 44
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 34.6 bits (78), Expect = 0.14
Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 15/114 (13%)
Query: 583 TSYACKCPAGYSSETCAVDIDECVT-----HNCQNGARCIDGVARYSCECTPGWEGALCE 637
T + + +D C CI GV C C G+ A
Sbjct: 166 TRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGV----CFCDLGYTAAQGT 221
Query: 638 KEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGA 691
+ + + + + L+ + VG C + YF
Sbjct: 222 CVSNTPNHSEMFDRFEGK--LSPLWYKITGGQVGTGC----GTLNDGRSLYFNG 269
Score = 29.6 bits (65), Expect = 5.4
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 17/108 (15%)
Query: 707 ICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLG 766
+C C GY ++ + + + + TG G
Sbjct: 208 VCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDG----- 262
Query: 767 DLLLPYFTWEQLGYTDTLSCP--------ECFSLDSGPGGPGLADSGP 806
+ LG + + P F + G G+ P
Sbjct: 263 ----RSLYFNGLGKREARTVPLDTRNIRLVQFYIQIGSKTSGITCIKP 306
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 34.0 bits (77), Expect = 0.21
Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 26/131 (19%)
Query: 601 DIDECVTHNCQNGARC--IDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRL 658
D C A + + C C G CEK + P E
Sbjct: 248 DFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPW-RRATAESAS 306
Query: 659 AGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSR 718
C+C+ + C ++ + G C +C G++
Sbjct: 307 ECLPCDCN--GRSQECYFDPELYRSTGH---GGHC--------------TNCRDNTDGAK 347
Query: 719 CEINIDECASG 729
CE C
Sbjct: 348 CE----RCREN 354
Score = 29.0 bits (64), Expect = 9.6
Identities = 14/101 (13%), Positives = 20/101 (19%), Gaps = 23/101 (22%)
Query: 824 DINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLC-----------------NFPDP 866
D + N+ C C+ +T G C
Sbjct: 248 DFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASE 307
Query: 867 CKDEPC-QNGGTCHEDCRHQADYK-----CDCLPGWTGKNC 901
C C C+ D +C G C
Sbjct: 308 CLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKC 348
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 34.3 bits (77), Expect = 0.22
Identities = 33/292 (11%), Positives = 68/292 (23%), Gaps = 22/292 (7%)
Query: 623 YSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISC 682
+ E P + + C N ++ C V C + + L+
Sbjct: 251 FQLEPNPHTKYQYGGVCVASCPHNFVVDQTSC-------VRACPPDKMEVDKNGLKMCEP 303
Query: 683 ADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVN 742
C C+ T F + ++ N+D +G + I ++
Sbjct: 304 CGGLCPK--ACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALD 361
Query: 743 AFICNCTNTAT--------GASMGCLGEVRLGDLLLPYFTWEQLGYTDTLSCPECFSLDS 794
N T + + + L +L + ++ S
Sbjct: 362 PEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTS 421
Query: 795 --GPGGPGLADSGPGVQTTPILGYTGEMCEIDINECELSSDMCGNNGECINQPGDYKCAC 852
++ + L Y + + + + C
Sbjct: 422 LGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVC 481
Query: 853 QFDTCGYLCNFPDPCKDEPCQNG---GTCHEDCRHQADYKCDCLPGWTGKNC 901
C P P + C+N G C C + +C
Sbjct: 482 DPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSC 533
Score = 30.8 bits (68), Expect = 2.9
Identities = 25/134 (18%), Positives = 32/134 (23%), Gaps = 6/134 (4%)
Query: 604 ECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDR---LAG 660
E N R C+ G GG C L G
Sbjct: 460 EERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNG 519
Query: 661 FVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPIC--DCPPGYRGSR 718
+ E C Q C G+ +F GP C CP G G++
Sbjct: 520 EPREFAHEAECFSCHPECQPMEGTATCN-GSGSDTCAQCAHFRDGPHCVSSCPHGVLGAK 578
Query: 719 CEINIDECASGPCK 732
I C+
Sbjct: 579 GPIYKYPDVQNECR 592
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 30.4 bits (68), Expect = 0.23
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 643 CLSNPCMNGGQCE--DRLAGFVCNCSEEYVGERCE 675
C+NGG + L + CNC Y G+RC+
Sbjct: 6 SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
Score = 26.6 bits (58), Expect = 5.5
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 686 PCYFGAVCQDTKISPYFP--QGPICDCPPGYRGSRCE 720
P + C + + + C+C GY G RC+
Sbjct: 4 PSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 31.7 bits (71), Expect = 0.25
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 600 VDIDECVTHNCQNGARC-IDGVARYSCECTPGW--EGALC-EKEIDECLSNP--CMNGGQ 653
+ +CV C + C R C+C + EG C E C N C +
Sbjct: 2 ISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAK 61
Query: 654 CE-----DRLAGFVCNCSEEY 669
C C C++
Sbjct: 62 CTEEDSGSNGKKITCECTKPD 82
Score = 28.2 bits (62), Expect = 3.7
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 682 CADQPCYFGAVCQDTKISPYFPQGPICDCPPGYR--GSRC-EINIDECAS--GPCKNSGQ 736
C + C + C + + C C Y+ G +C E C G C +
Sbjct: 7 CVKKQCPQNSGC-----FRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAK 61
Query: 737 CIDDVNA-----FICNCTNTATGA 755
C ++ + C CT +
Sbjct: 62 CTEEDSGSNGKKITCECTKPDSYP 85
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 32.1 bits (72), Expect = 0.29
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 872 CQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVPE 906
C NGGTC + + C+C + G++C
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS 37
Score = 29.8 bits (66), Expect = 1.6
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 687 CYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECA 727
C G C K YF C+CP + G CEI+ +
Sbjct: 3 CLNGGTCVSNK---YFSNIHWCNCPKKFGGQHCEIDKSKTC 40
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 32.6 bits (73), Expect = 0.31
Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 12/148 (8%)
Query: 603 DECVTHNCQNGARCI-DGVARYSCECTPGWEGALCEKEID----ECLSNPC-MNGGQCED 656
+ C +C G +C + + C C P + + + N C + +C++
Sbjct: 4 ETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKE 63
Query: 657 RLAGFV---CNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPG 713
+ V C + C + C P + +C
Sbjct: 64 QPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSSEQSLCGNDGV 123
Query: 714 YRGSRCEINIDECASGPC---KNSGQCI 738
S C + C G G+CI
Sbjct: 124 TYSSACHLRKATCLLGRSIGLAYEGKCI 151
Score = 28.7 bits (63), Expect = 6.1
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 864 PDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVPEYLPSRVVD 914
+ C++ C G C + +++ +C C P +C+ + P +D
Sbjct: 3 METCENVDCGPGKKCRMNKKNKP--RCVCAP-----DCSNITWKGPVCGLD 46
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 29.8 bits (67), Expect = 0.32
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 704 QGPICDCPPGYRGSRCE 720
C C GY G RCE
Sbjct: 26 SQNYCRCEVGYTGVRCE 42
Score = 29.8 bits (67), Expect = 0.39
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 648 CMNGGQCE--DRLAGFVCNCSEEYVGERCESL 677
C++G QC ++ C C Y G RCE
Sbjct: 14 CLHG-QCIYLVDMSQNYCRCEVGYTGVRCEHF 44
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 30.8 bits (69), Expect = 0.33
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 632 EGALCEKEIDECLS---NPCMNGGQCE--DRLAGFVCNCSEEYVGERCESL 677
+G K+ D CL + C++G +C+ L C C Y GERC L
Sbjct: 29 KGKGLGKKRDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHGL 78
Score = 30.5 bits (68), Expect = 0.42
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 704 QGPICDCPPGYRGSRCE 720
+ P C C PGY G RC
Sbjct: 60 RAPSCICHPGYHGERCH 76
Score = 27.0 bits (59), Expect = 7.6
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 862 NFPDPCKDEP---CQNGGTCHEDCRHQAD---YKCDCLPGWTGKNC 901
DPC + C +G +C++ + C C PG+ G+ C
Sbjct: 35 KKRDPCLRKYKDFCIHG-----ECKYVKELRAPSCICHPGYHGERC 75
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.2 bits (70), Expect = 0.35
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 692 VCQDTKISP------YFPQGPICDCPPGYR--GSRC-EINIDECAS--GPCKNSGQCI-D 739
C DT + Y C ++ +C C G C +C +
Sbjct: 6 RCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMN 65
Query: 740 DVNAFICNCTNTATGA 755
D N +C CT +
Sbjct: 66 DKNEIVCKCTKEGSEP 81
Score = 29.6 bits (66), Expect = 1.4
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 603 DECVTHNCQNGARCI-DGVARYSCECTPGWE--GALC-EKEIDECLSNPCMNGG-----Q 653
C+ N A C C ++ C C NGG +
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDK---NGGCAPEAE 61
Query: 654 CEDRLAG-FVCNCSEEY 669
C+ VC C++E
Sbjct: 62 CKMNDKNEIVCKCTKEG 78
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 33.3 bits (75), Expect = 0.35
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 707 ICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFICN 747
IC C GY G CE + G C D N+ IC+
Sbjct: 208 ICRCDTGYIGKNCE--CQTQGRSSQELEGSCRKDNNSIICS 246
Score = 29.8 bits (66), Expect = 4.1
Identities = 16/97 (16%), Positives = 23/97 (23%), Gaps = 23/97 (23%)
Query: 821 CEIDINECELSSDMCGNNGECINQ-----PGDYKCACQFDTCGYLCNFPDP-CK----DE 870
CE + +C G G C+ T G + C+
Sbjct: 184 CECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSI 243
Query: 871 PCQNGGTCHEDCRHQADYKCDCLPG------WTGKNC 901
C G C +C C G+ C
Sbjct: 244 ICSGLGDCVCG-------QCLCHTSDVPGKLIYGQYC 273
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 32.2 bits (73), Expect = 0.42
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 592 GYSSETCAVDIDECVTHNCQNGAR---CIDGVARYSCECTPGWEGALCEKEI-DECL 644
G+ + A DIDEC + C + + + C C G+ ++ ++ L
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQSL 170
Score = 31.8 bits (72), Expect = 0.54
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 859 YLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWT----GKNCTE 903
Y D C+ P + H H + C C G+ + C+E
Sbjct: 119 YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 31.1 bits (70), Expect = 1.2
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 815 GYTGEMCEIDINECELSSDMC-GNNGECINQPGDYKCACQFDTCGY 859
G+ DI+EC+++ + C N G + C+C+ GY
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCR---AGY 156
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 32.7 bits (73), Expect = 0.60
Identities = 26/209 (12%), Positives = 43/209 (20%), Gaps = 12/209 (5%)
Query: 556 VRCTSEAYLNLIIYISW-LLSPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGA 614
V + L + I W + + +D +Y P + C +N
Sbjct: 126 VGFHNNYNLCHMRTIQWSEIVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQ 185
Query: 615 RCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGG-----QCEDRLAGFVC--NCSE 667
+ C + E C C C++ VC C
Sbjct: 186 KFSKLTCSPQCAGGRCYGPKPRECCHLFCAGG-CTGPTQKDCIACKNFFDEGVCKEECPP 244
Query: 668 EYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPIC--DCPPGYRGSRCEINIDE 725
+ + + +GA C C CP E
Sbjct: 245 MRKYN-PTTYVLETNPEGKYAYGATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCN 303
Query: 726 CASGPCKNSGQCIDDVNAFICNCTNTATG 754
+ N G
Sbjct: 304 GPCPKTCPGVTVLHAGNIDSFRNCTVIDG 332
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein,
nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Length = 192
Score = 31.9 bits (72), Expect = 0.62
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 10/121 (8%)
Query: 462 DRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQVGPG 521
D S NG + A+ + + + N PE+ G + + D + ++
Sbjct: 10 DNSEWMING--DYIPTRFEAQKDTVHMIFNQKINDNPEN-MCGLMTIGDNSPQVL-STLT 65
Query: 522 FDFQRIDHPFTKKHVIVCVLNAHQLSGISD-QADLVRCTSEAYLNLIIYISWLLSPHDSD 580
D+ + + H + NA GI Q L ++ I+ SP D
Sbjct: 66 RDYGKF---LSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFV--GSPIVED 120
Query: 581 P 581
Sbjct: 121 E 121
Score = 30.8 bits (69), Expect = 1.4
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%)
Query: 120 DRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNH-LIQVVR 178
D S NG + A+ + + + N PE+ G + + D + L + R
Sbjct: 10 DNSEWMING--DYIPTRFEAQKDTVHMIFNQKINDNPEN-MCGLMTIGDNSPQVLSTLTR 66
Query: 179 NVTLVQVKLNGTEYFRKTISSTGILDVQVLYLGGIPETVHHHRSI 223
+ ++ GI Q L L + R +
Sbjct: 67 DYGKFLSAMHDLPVRGNAKFGDGIQIAQ-LALKHRENKIQRQRIV 110
Score = 29.6 bits (66), Expect = 3.4
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 317 DRSSPSSNGAGSEETSYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISS 376
D S NG + A+ + + + N PE+ G + + D + ++ T++
Sbjct: 10 DNSEWMING--DYIPTRFEAQKDTVHMIFNQKINDNPEN-MCGLMTIGDNSPQVLSTLTR 66
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 31.8 bits (71), Expect = 0.74
Identities = 33/151 (21%), Positives = 41/151 (27%), Gaps = 29/151 (19%)
Query: 598 CAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA----------------LCEKEID 641
C D C C G C R CEC P G CE
Sbjct: 57 CLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAA 116
Query: 642 ECLSNP---CMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKI 698
C +P M G+C VC + V ++ S + C PC
Sbjct: 117 RCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCP---------- 166
Query: 699 SPYFPQGPICDCPPGYRGSRCEINIDECASG 729
P P +C S C + C G
Sbjct: 167 VPSSPGQELCGNNNVTYISSCHMRQATCFLG 197
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 32.3 bits (73), Expect = 0.76
Identities = 30/163 (18%), Positives = 46/163 (28%), Gaps = 23/163 (14%)
Query: 620 VARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEE-YVGERCESLR 678
+ + +C C N + G+ D G C + C+ +
Sbjct: 200 LIKNMPQCILKKPLKTDVVSPAVC-GNYFVEVGEECDC--GSPRTCRDPCCDATTCKLRQ 256
Query: 679 QISCADQPC-------YFGAVCQDTKISPYFP---QGPICDCPPGYR--GSRCEINIDEC 726
CA+ C G C+ K G +C ++ G C+ N C
Sbjct: 257 GAQCAEGLCCDQCRFKGAGTECRAAKDECDMADVCTGRSAECTDRFQRNGQPCKNNNGYC 316
Query: 727 ASGPCKNSG-QCID------DVNAFICNCTNTATGASMGCLGE 762
+G C QCI V+ C N C E
Sbjct: 317 YNGKCPIMADQCIALFGPGATVSQDACFQFNREGNHYGYCRKE 359
Score = 28.8 bits (64), Expect = 9.9
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 31/122 (25%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQ--NGARCIDGVARYSCECTPGWEGALCEKEIDEC- 643
C C S TC C C+ GA+C +G +C G C DEC
Sbjct: 234 CDCG---SPRTC--RDPCCDATTCKLRQGAQCAEG--LCCDQCRFKGAGTECRAAKDECD 286
Query: 644 -------LSNPC-----MNGGQCEDRLAGFVC---NCSEEYVGERCESL--RQISCADQP 686
S C NG C++ C C + ++C +L + +
Sbjct: 287 MADVCTGRSAECTDRFQRNGQPCKNNNG--YCYNGKCP--IMADQCIALFGPGATVSQDA 342
Query: 687 CY 688
C+
Sbjct: 343 CF 344
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 32.0 bits (72), Expect = 0.88
Identities = 21/142 (14%), Positives = 31/142 (21%), Gaps = 15/142 (10%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSN 646
C G C +D C C A G + P EG C K
Sbjct: 236 CNLTFGPEYSVCP-GMDVCARLWC---AVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGK 291
Query: 647 PCMNGGQCEDRLAGFVCNCSEEYVGERCESL--RQISCADQPCY------FGAVCQDTKI 698
+ + +C + A + C G C
Sbjct: 292 CVDKTKKKYYSTSSHGNWG-SWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGK-- 348
Query: 699 SPYFPQGPICDCPPGYRGSRCE 720
+ + CPP +
Sbjct: 349 RAIYRSCSLMPCPPNGKSFGSA 370
Score = 31.2 bits (70), Expect = 1.5
Identities = 10/59 (16%), Positives = 13/59 (22%), Gaps = 3/59 (5%)
Query: 850 CACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCD---CLPGWTGKNCTEVP 905
C F +C D C C C + + C G V
Sbjct: 236 CNLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVD 294
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 31.9 bits (71), Expect = 0.89
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 21/103 (20%)
Query: 821 CEIDINECELSSDMCGNNGECINQPGDYKCACQFDTCGYLCNF--------------PDP 866
+ C++ + EC + + D +
Sbjct: 6 RQAKNGRCQVLYKTELSKEECCSTGRLSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKET 65
Query: 867 CKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVPEYLP 909
C++ C G C + +++ +C C P +C+ + P
Sbjct: 66 CENVDCGPGKKCRMNKKNKP--RCVCAP-----DCSNITWKGP 101
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 32.0 bits (72), Expect = 0.94
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 864 PDPCKDEPCQNGGTCHEDC---RHQADYKCDCLPGWT----GKNCTEVPEY 907
P+ NGG C C + Y+C C G GK C + +
Sbjct: 264 PNATNPCGIDNGG-CSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 29.0 bits (64), Expect = 1.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 643 CLSNPC--MNGGQCEDRLAGFVCNCSEEY 669
C SNPC G C++ +G++C C++ Y
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 31.9 bits (71), Expect = 1.2
Identities = 47/362 (12%), Positives = 81/362 (22%), Gaps = 35/362 (9%)
Query: 572 WLLSPHDSDPLTSYAC--KCPAGYSSETCAVDIDECVT-------HNC------QNGARC 616
W SP D LT C C ++C +C + C
Sbjct: 184 WGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGIC 243
Query: 617 IDG------VARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDRLAGFVCNCSEEYV 670
+ E EG C++ N E VC + + V
Sbjct: 244 ELHCPALVTYNTDTFESMHNPEGRYTFG--ASCVTTCPYNYLSTEVGSCTLVCPPNNQEV 301
Query: 671 GERCESLRQISCAD--QPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECAS 728
+ R C+ +G + + + + + + + E
Sbjct: 302 TAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFD 361
Query: 729 GPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDL----LLPYFTWEQLGYTDTL 784
G + + + TG L DL L L
Sbjct: 362 GDPSSGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRDLSVFQNLRIIRGRILHDGAYS 421
Query: 785 SCPECFSLDSGPGGPGLADSGPGV--QTTPILGYTGEMCEIDINECELSSDMCGNNGECI 842
+ + S L + + + + + N
Sbjct: 422 LTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPE- 480
Query: 843 NQPGDYKCACQFDTCGYLCNFPDPCKDEPCQN---GGTCHEDCRHQADYKCDCLPGWTGK 899
G C C P P + C + G C E+CR + +
Sbjct: 481 EDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDKRCL 540
Query: 900 NC 901
C
Sbjct: 541 PC 542
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 31.4 bits (71), Expect = 1.2
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 9/58 (15%)
Query: 844 QPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNC 901
+ G C LC P ++ C + C W NC
Sbjct: 162 KLGPPCGDCPSACDNGLCTNPCTIYNKLTN----CDSLLKQ-----SSCQDDWIKSNC 210
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 28.3 bits (63), Expect = 1.4
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 704 QGPICDCPPGYRGSRCE 720
+ C C Y G RC
Sbjct: 32 EAVTCKCQQEYFGERCG 48
Score = 26.4 bits (58), Expect = 6.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 648 CMNGGQCE--DRLAGFVCNCSEEYVGERCE 675
C++G +C+ + L C C +EY GERC
Sbjct: 20 CIHG-ECKYIEHLEAVTCKCQQEYFGERCG 48
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 31.0 bits (69), Expect = 1.4
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 38/126 (30%)
Query: 832 SDMCGN---NGECINQPGDYKCA-CQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCR---- 883
+ GN + +C N + C + N + + G C C
Sbjct: 11 QEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGC 70
Query: 884 ------------------------HQADYKCD-----CLPGWTGKNCTE-VPEYLPSRVV 913
H +D CD W G +C E VPE L + +
Sbjct: 71 LFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTL 130
Query: 914 DLALLI 919
+ +L+
Sbjct: 131 VVVVLM 136
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 32.0 bits (72), Expect = 1.4
Identities = 19/121 (15%), Positives = 30/121 (24%), Gaps = 3/121 (2%)
Query: 592 GYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNG 651
YS + +T+ C+NG C T C + + G
Sbjct: 258 DYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIPAPRCTLKPCDYPDIKH-GG 316
Query: 652 GQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICDCP 711
E+ + +Y C+ + C SP P C P
Sbjct: 317 LYHENMRRPYFPVAVGKYYSYYCDEH--FETPSGSYWDHIHCTQDGWSPAVPCLRKCYFP 374
Query: 712 P 712
Sbjct: 375 Y 375
Score = 29.7 bits (66), Expect = 5.7
Identities = 47/351 (13%), Positives = 85/351 (24%), Gaps = 69/351 (19%)
Query: 579 SDPLTSYACKCP-----AGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEG 633
S T A ++ +++ + + C +G G S C
Sbjct: 482 SAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWS 541
Query: 634 ALCEKEIDECLSNPCMNGGQCEDRLAGFVCN------CSEEYVGERCESLRQISCADQPC 687
L EC + + + C + S++
Sbjct: 542 DLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQ--------- 592
Query: 688 YFGAVCQDTKISPYFP--QGPICDCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFI 745
C +SP P + + C P + + + ++ +
Sbjct: 593 -----CYHFGLSPDLPICKEQVQSCGPPPELLNGNVK---EKTKEEYGHSEVVE----YY 640
Query: 746 CN------------CTN-TATGASMGCLGEVRLGDLLLPYFTWEQL-------GYTDTLS 785
CN C + T + + E GD+ W QL G + +
Sbjct: 641 CNPRFLMKGPNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFN 700
Query: 786 CPECFSLDSGPGGPGLADSGPGVQTTPILGYTGE-MCEIDINECELSSDMCGNNGECINQ 844
C E F++ G T +T C + S E +
Sbjct: 701 CSESFTM-----------IGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKN 749
Query: 845 PGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPG 895
++ Y C + C NG E A + P
Sbjct: 750 KKEFDHNS---NIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPP 797
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 31.4 bits (70), Expect = 1.4
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 866 PCKDEPCQNGGTCHEDCRHQADY---KCDCLPGWTGKNC 901
C+ + N C + C C PGW G C
Sbjct: 436 ACQAQAEPNSHRC---NNGNGTFECGVCRCGPGWLGSQC 471
Score = 29.1 bits (64), Expect = 7.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 707 ICDCPPGYRGSRCE 720
+C C PG+ GS+CE
Sbjct: 459 VCRCGPGWLGSQCE 472
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 31.6 bits (71), Expect = 1.5
Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 24/228 (10%)
Query: 167 ADGNNHLIQVVR--NVTLVQVKLNGTEYFRKTISSTGILDVQVLYLGGIPETVHHHRSIR 224
G H +++ + V ++ + + ++ +
Sbjct: 154 LVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213
Query: 225 SPYQPSRSYPSGGHCTDLWR----------DFSCSCVRPFLGHTCQYNFTAATFGHENTT 274
S ++ G +C ++ V + T + T
Sbjct: 214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQDSGWE 272
Query: 275 NSLVTVAVGG---VARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEET 331
+ G + I+ +T++L G G + +G G +
Sbjct: 273 FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDW--VDGVGKK-- 328
Query: 332 SYIAAEMEAGELFVRLQFNSTPESYNVGGVKLADGNNHLIQTISSTGI 379
A M A ++ + S + D NH I+ ++ G
Sbjct: 329 ----ARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGR 372
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 31.0 bits (69), Expect = 1.5
Identities = 34/168 (20%), Positives = 44/168 (26%), Gaps = 38/168 (22%)
Query: 598 CAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA----------------LCEKEID 641
C D C C G C R CEC P G CE
Sbjct: 66 CLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAA 125
Query: 642 ECLSNP---CMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKI 698
C +P M G+C VC + V ++ S + C PC
Sbjct: 126 RCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPV--------- 176
Query: 699 SPYFPQGPICDCPPGYRGSRCEINIDECAS---------GPCKNSGQC 737
P P +C S C + C G C + +
Sbjct: 177 -PSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCAGTPEE 223
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.4 bits (70), Expect = 1.5
Identities = 26/185 (14%), Positives = 38/185 (20%), Gaps = 12/185 (6%)
Query: 575 SPHDSDPLTSYACKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGA 634
D + C A + A I+ C + C C A
Sbjct: 147 LNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHC---QKVCPTICKSHGCTA 203
Query: 635 LCEKEIDECLSNPCMNGG-----QCEDRLAGFVC--NCSEEYVGERCESLRQISCADQPC 687
ECL N C + C C Y + S
Sbjct: 204 EGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLH 263
Query: 688 YFGAVCQDTKISPYFPQGPIC--DCPPGYRGSRCEINIDECASGPCKNSGQCIDDVNAFI 745
+ + Y C +CP GY + + C K +
Sbjct: 264 HKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS 323
Query: 746 CNCTN 750
Sbjct: 324 VTSAQ 328
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 28.7 bits (64), Expect = 1.9
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 865 DPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCTEVPEYLP 909
+ C++ C G C + +++ +C C P +C+ + P
Sbjct: 2 ETCENVDCGPGKKCRMNKKNKP--RCVCAP-----DCSNITWKGP 39
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 30.7 bits (69), Expect = 2.3
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 830 LSSDMCGNNGECINQPGDYKCACQFDTCGYLC-NFPDPCKDEPCQNGGTCHEDCRHQADY 888
L G + + Q C F C P PC C H C+ +
Sbjct: 222 LPVTFPGKDYDADRQ-----CQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQTKHSP 276
Query: 889 KCD 891
D
Sbjct: 277 WAD 279
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 30.4 bits (69), Expect = 2.4
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 603 DECVTHN---CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCE 655
+EC CQ+ C+ G Y+C C G+ K+ C +
Sbjct: 3 NECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 56
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar
binding protein; 1.80A {Phytolacca americana} SCOP:
g.3.1.1 g.3.1.1 g.3.1.1
Length = 126
Score = 29.4 bits (65), Expect = 2.6
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGV---ARYSCECTPGWEGALCEKEIDEC 643
C Y + C D G C D + C + G G C+ +
Sbjct: 25 CGTTEEYCGKGCQSQCDYNRCGKEFGGKECHDELCCSQYGWCGNSDGHCGEGCQSQCSYW 84
Query: 644 LSNPCMNGGQCEDRLA----GFVCNCSEEYVGERCES 676
G C + + G+ C ++++ + C+S
Sbjct: 85 RCGKDFGGRLCTEDMCCSQYGW-CGLTDDHCEDGCQS 120
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 30.1 bits (67), Expect = 2.9
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 38/126 (30%)
Query: 832 SDMCGN---NGECINQPGDYKCA-CQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCR---- 883
+ GN + +C N + C + N + + G C C
Sbjct: 11 QEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGC 70
Query: 884 ------------------------HQADYKCD-----CLPGWTGKNCTE-VPEYLPSRVV 913
H +D CD W G +C E VPE L + +
Sbjct: 71 LFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTL 130
Query: 914 DLALLI 919
+ +L+
Sbjct: 131 VVVVLM 136
Score = 28.6 bits (63), Expect = 9.3
Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 17/127 (13%)
Query: 587 CKCPAGYSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKE--IDECL 644
C ++ C D +C + C S +C + C+ + CL
Sbjct: 17 KVCSLQCNNHACGWDGGDCSLNFNDPWKNC-----TQSLQCWKYFSDGHCDSQCNSAGCL 71
Query: 645 ---SNPCMNGGQCEDRLAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPY 701
+ GQC + C + + C+ C C + + +
Sbjct: 72 FDGFDCQRAEGQCNP---LYDQYCKDHFSDGHCDQ----GCNSAECEWDGLDCAEHVPER 124
Query: 702 FPQGPIC 708
G +
Sbjct: 125 LAAGTLV 131
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 30.5 bits (69), Expect = 3.0
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Query: 835 CGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLP 894
CG N GD++ Y C + + Q Y C
Sbjct: 70 CGQPRNLPN--GDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQG 127
Query: 895 GWTGK-NCTEVPEYLP 909
W + ++P LP
Sbjct: 128 IWKNEQKGEKIPRCLP 143
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.27A
{Legionella pneumophila}
Length = 323
Score = 30.2 bits (67), Expect = 3.2
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 17/123 (13%)
Query: 25 NEEQTIYPINPITQFEQPTSLSQSQTSFPTTTNFTFVTSPDFTAATFGHENTTNSLVTVA 84
+E + P N SLS + ++ ++ + +
Sbjct: 20 KDENSNLPDNS--------SLSYTLSNLLSSVKLEKLPTKKDIWEPLTIPGAPEF----- 66
Query: 85 VGGVARRAVRNIVDISMFIRTRQLRGAIFYLGGSGDRSSPSSNGAGSEETSYIAAEMEAG 144
++ A + +D +R ++ G + + P S+G S +S+ A A
Sbjct: 67 --NLSVEAQKRFID--HLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCAS 122
Query: 145 ELF 147
Sbjct: 123 IAL 125
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 30.0 bits (67), Expect = 3.3
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 12/79 (15%)
Query: 834 MCGNNGECINQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDC-------RHQA 886
+ G++ + + + C+ NGG C C H
Sbjct: 237 LTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGG-CQYLCLPAPQINPHSP 295
Query: 887 DYKCDCLPGWT----GKNC 901
+ C C G ++C
Sbjct: 296 KFTCACPDGMLLARDMRSC 314
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 29.6 bits (66), Expect = 3.5
Identities = 8/56 (14%), Positives = 14/56 (25%)
Query: 677 LRQISCADQPCYFGAVCQDTKISPYFPQGPICDCPPGYRGSRCEINIDECASGPCK 732
+ C + + + C C SRC+ E C+
Sbjct: 157 ITDYVDGSGSGSPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCR 212
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 29.9 bits (67), Expect = 3.6
Identities = 14/69 (20%), Positives = 17/69 (24%), Gaps = 12/69 (17%)
Query: 836 GNNGECINQP---GDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDC 892
GN I P G C LC P ++ C + C
Sbjct: 140 GNIRGSIATPYKSGPPCADCPSACVNRLCTNPCNYNNDFS----NCKSLAKK-----SKC 190
Query: 893 LPGWTGKNC 901
W K C
Sbjct: 191 QTEWIKKKC 199
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 30.4 bits (67), Expect = 3.8
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 843 NQPGDYKCACQFDTCGYLCNFPDPCKDEPCQNGGTCHEDCRHQADYKCDCLPGWTGKNCT 902
+QP + T + + C G C + C C W G C
Sbjct: 515 HQPAPFDK---QQTWAIDNVYIGDGCLDMCSGHGRCVQG-------SCVCDEQWGGLYCD 564
Query: 903 EVPEYLPSRVVD 914
E LP+++ D
Sbjct: 565 EPETSLPTQLKD 576
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 29.4 bits (65), Expect = 4.9
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 13/115 (11%)
Query: 815 GYTGEMCEIDINECELSSDMCGNNGECINQPGDY---KCACQFDTCGYLCNFPDPCKDEP 871
C+ D +C L+ + N DY +C +T L + + +
Sbjct: 21 ACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVECLFDNFECQGNSK 80
Query: 872 CQNGGTCHEDCR-HQADYKCDC-----LPGWTGKNC-TEVPEYLPSRVVDLALLI 919
+ C H D C+ GW G +C + PE L + + +L+
Sbjct: 81 TCK---YDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPENLAEGTLVIVVLM 132
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 30.0 bits (66), Expect = 4.9
Identities = 32/194 (16%), Positives = 47/194 (24%), Gaps = 10/194 (5%)
Query: 545 QLSGISDQADLVRCTSEAYLNLIIYISWLLSPHDSDPLTSYACKCPAGYSSETCA----V 600
L I + S A ++L I L S + + T
Sbjct: 398 NLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLF 457
Query: 601 DIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGGQCEDR--- 657
T N C EG + D G +C D+
Sbjct: 458 GTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKL 517
Query: 658 LAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPIC--DCPPGYR 715
L G E +C + C G + ++ GP C CP G
Sbjct: 518 LEGEPREFVENSECIQCHPECLPQAMNITCT-GRGPDNCIQCAHYIDGPHCVKTCPAGVM 576
Query: 716 GSRCEINIDECASG 729
G + +G
Sbjct: 577 GENNTLVWKYADAG 590
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 29.7 bits (66), Expect = 5.4
Identities = 28/207 (13%), Positives = 51/207 (24%), Gaps = 7/207 (3%)
Query: 593 YSSETCAVDIDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEIDECLSNPCMNGG 652
S + ++ V C G + G + C WE + E + +NG
Sbjct: 342 VSGQKDRYTYNDTVIFACMFG-FTLKGSKQIRCNAQGTWEPSAPVCEKECQAPPNILNGQ 400
Query: 653 QCEDRLAGFVCNCSEEYV---GERCESLRQISCADQPCYFGAVCQDTKISPYFPQGPICD 709
+ + + F S +Y G I C + + V Q + +
Sbjct: 401 KEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEATGRQLLT 460
Query: 710 CPPGYR-GSRCEINIDECASGPCKNSGQCIDDVNAFICNCTNTATGASMGCLGEVRLGDL 768
P + E +C + F+ + + G
Sbjct: 461 KPQHQFVRPDVNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCKE--ITCPPPPVIYNGAH 518
Query: 769 LLPYFTWEQLGYTDTLSCPECFSLDSG 795
G T T +C
Sbjct: 519 TGSSLEDFPYGTTVTYTCNPGPERGVE 545
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 29.4 bits (66), Expect = 5.4
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 602 IDECVTHNCQNGARCIDGVARYSCECTPGWEGALCEKEI---DECL--------SNPCMN 650
I+E V + + + R CECTP + + EI ++CL S+ C N
Sbjct: 43 IEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPN 102
Query: 651 GGQCEDR 657
G C +R
Sbjct: 103 GDYCSNR 109
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 29.5 bits (65), Expect = 6.0
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 8/55 (14%)
Query: 833 DMCGNNGE----CINQPGDYKCAC----QFDTCGYLCNFPDPCKDEPCQNGGTCH 879
+ C G C N G ++C C + C P N
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIR 56
Score = 28.7 bits (63), Expect = 9.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 871 PCQNGGTCHEDCRHQA-DYKCDCLPGWT 897
C G C + C + ++C C G+
Sbjct: 3 ECAEEGYCSQGCTNSEGAFQCWCEAGYE 30
>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure
initiative, northeast structural genomics consortium,
NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16
Length = 170
Score = 28.6 bits (63), Expect = 8.1
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 577 HDSDPLTSYACKCPAGYSSETCAVDIDE------CVTHNCQNGARCIDG-VARYSCECTP 629
H LT Y ++ +D+ V C G+ + C +P
Sbjct: 76 HAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVSP 135
Query: 630 GWEGA 634
G+
Sbjct: 136 GFTFD 140
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.1 bits (65), Expect = 8.9
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 5/41 (12%)
Query: 861 CNFPDPCKD---EPCQNGGTCHEDCRHQADYKCDCLPGWTG 898
+ C D C C + C C GW G
Sbjct: 15 NSAQRFCPDGSPSECHEHADCVLE--RDGSRSCVCAVGWAG 53
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 29.0 bits (64), Expect = 9.2
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 7/50 (14%)
Query: 864 PDPCKDEPCQNGGTCHEDC--RHQADYKCDCLPGWT----GKNCTEVPEY 907
NGG H C + +C C +C +
Sbjct: 576 EYRQHPCAQDNGGCSHI-CLVKGDGTTRCSCPMHLVLLQDELSCGGTKHH 624
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil
granule protein, EMBP; 1.8A {Homo sapiens} SCOP:
d.169.1.1 PDB: 2brs_A*
Length = 117
Score = 27.4 bits (61), Expect = 9.3
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 235 SGGHCTDL------WRDFSCSCVRPFLGHTCQY 261
GGHC L WR C PF+ C Y
Sbjct: 88 RGGHCVALCTRGGYWRRAHCLRRLPFI---CSY 117
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.0 bits (64), Expect = 9.3
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 802 ADSGPGVQTTPILGYTGEMCEIDINE--CELSSDMCGNNGEC----INQPGDYKCAC 852
+ I M N S+ NG C + +P +CAC
Sbjct: 547 VHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCAC 603
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein,
zinc BIN dimer, conformational change, cell adhesion;
HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A*
1e8b_A* 1qo6_A 2fn2_A*
Length = 308
Score = 28.8 bits (63), Expect = 9.8
Identities = 22/137 (16%), Positives = 37/137 (27%), Gaps = 12/137 (8%)
Query: 587 CKCPAGYSSETCAVDIDECVTHN-CQNGARCIDGVARYSCECTPGWEGALCEKEIDECLS 645
C P Y++ +C + N C Y + G+ +EI
Sbjct: 124 CHFPFLYNNHN----YTDCTSEGRRDNMKWCGT-TQNYDADQKFGFCPMAAHEEICTTNE 178
Query: 646 NPCMNGGQCEDR--LAGFVCNCSEEYVGERCESLRQISCADQPCYFGAVCQD--TKISPY 701
G D+ G + C+ G + S C + +
Sbjct: 179 GVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKR 238
Query: 702 FPQGPI--CDCPPGYRG 716
+G + C C RG
Sbjct: 239 HEEGHMLNCTCFGQGRG 255
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 28.1 bits (63), Expect = 10.0
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 170 NNHLIQVVRNVTLVQVKLNGTEYFRKTISSTGILDVQVL 208
H VV N T V V G Y K D+ +
Sbjct: 35 AAH---VVGNNTFVNVCYEGLMYEAKVRYMPE-KDIAFI 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.427
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,222,779
Number of extensions: 959484
Number of successful extensions: 4300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2970
Number of HSP's successfully gapped: 786
Length of query: 979
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 876
Effective length of database: 3,825,930
Effective search space: 3351514680
Effective search space used: 3351514680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)