RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9686
(769 letters)
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB:
1gd6_A
Length = 120
Score = 117 bits (295), Expect = 2e-31
Identities = 46/118 (38%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 279 KRFGACELAKFLVRQRGIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQINDK 338
KRF C L L +Q G + WVC+ ES R ++ + N NGSRD+G+FQINDK
Sbjct: 1 KRFTRCGLVNELRKQ-GFDENLMRDWVCLVENESARYTDKIANVNKNGSRDYGLFQINDK 59
Query: 339 YWCTASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HYCN 395
YWC+ GK+C+ CS ++IT C KI+ + F AWS + ++CN
Sbjct: 60 YWCSKGSTPGKDCNVTCSQLLTDDITVASTCAKKIYKR------TKFDAWSGWDNHCN 111
Score = 72.7 bits (178), Expect = 1e-15
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 15 GSRDHGIFQINDKYWCTASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGF 74
GSRD+G+FQINDKYWC+ GK+C+ CS ++IT C KI+ + F
Sbjct: 47 GSRDYGLFQINDKYWCSKGSTPGKDCNVTCSQLLTDDITVASTCAKKIYKR------TKF 100
Query: 75 QAWSTY-HYCN 84
AWS + ++CN
Sbjct: 101 DAWSGWDNHCN 111
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca
domestica} PDB: 2h5z_A* 3cb7_A
Length = 122
Score = 115 bits (289), Expect = 2e-30
Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 279 KRFGACELAKFLVRQRGIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQINDK 338
K F C LA+ + G+ + ++P W CIA ES+ +N P N NGS D+GIFQIN+
Sbjct: 1 KTFTRCSLAREMYAL-GVPKSELPQWTCIAEHESSYRTNVVGPTNSNGSNDYGIFQINNY 59
Query: 339 YWCTAS--GPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTYHYCN 395
YWC S + ECH C + +NI++ V C KI SQ G+ AWST+ YC+
Sbjct: 60 YWCQPSNGRFSYNECHLSCDALLTDNISNSVTCARKIKSQ------QGWTAWSTWKYCS 112
Score = 70.4 bits (172), Expect = 8e-15
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 15 GSRDHGIFQINDKYWCTAS--GPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS D+GIFQIN+ YWC S + ECH C + +NI++ V C KI SQ
Sbjct: 47 GSNDYGIFQINNYYWCQPSNGRFSYNECHLSCDALLTDNISNSVTCARKIKSQ------Q 100
Query: 73 GFQAWSTYHYCN 84
G+ AWST+ YC+
Sbjct: 101 GWTAWSTWKYCS 112
>1qqy_A Lysozyme C; APO-type protein, calcium binding lysozyme, enzyme,
hydrolase; 1.85A {Canis lupus familiaris} SCOP: d.2.1.2
PDB: 1el1_A 1i56_A 2cwi_A 2z2e_A 2eql_A
Length = 130
Score = 109 bits (273), Expect = 3e-28
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Query: 279 KRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQIN 336
K F CELA+ L G + WVC+A ESN N+ A + +N NGS D+GIFQ+N
Sbjct: 2 KIFSKCELARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQLN 61
Query: 337 DKYWC-TASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HYC 394
K+WC + S + C+ CS F D+NI DD+AC ++ G AW + +C
Sbjct: 62 SKWWCKSNSHSSANACNIMCSKFLDDNIDDDIACAKRVVKDPN-----GMSAWVAWVKHC 116
Score = 68.9 bits (168), Expect = 4e-14
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 14 RGSRDHGIFQINDKYWC-TASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS D+GIFQ+N K+WC + S + C+ CS F D+NI DD+AC ++
Sbjct: 50 NGSSDYGIFQLNSKWWCKSNSHSSANACNIMCSKFLDDNIDDDIACAKRVVKDPN----- 104
Query: 73 GFQAWSTY-HYC 83
G AW + +C
Sbjct: 105 GMSAWVAWVKHC 116
>1hml_A Alpha-lactalbumin; calcium-binding protein; 1.70A {Homo sapiens}
SCOP: d.2.1.2
Length = 142
Score = 109 bits (272), Expect = 5e-28
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 263 LLVLVYCTLLPRQIEGKRFGACELAKFLVRQRGIARRDVPTWVCIATKESNRNSNARSPK 322
+ L +L I K+F CEL++ L G +P +C S ++ A
Sbjct: 4 FVPLFLVGILFPAILAKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVEN 63
Query: 323 NGNGSRDHGIFQINDKYWCTASG--PAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRA 380
N S ++G+FQI++K WC +S + C C F D++ITDD+ C KI
Sbjct: 64 --NESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDI---- 117
Query: 381 RGNGFQAWSTY-HYC 394
G W + C
Sbjct: 118 --KGIDYWLAHKALC 130
Score = 64.0 bits (155), Expect = 3e-12
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 15 GSRDHGIFQINDKYWCTASG--PAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
S ++G+FQI++K WC +S + C C F D++ITDD+ C KI
Sbjct: 65 ESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDI------K 118
Query: 73 GFQAWSTY-HYC 83
G W + C
Sbjct: 119 GIDYWLAHKALC 130
>3b72_A Lysozyme C; hen egg-white lysozyme, protein-SDS complex, MPD,
allergen, antimicrobial, bacteriolytic enzyme
glycosidase, hydrolase; 1.50A {Gallus gallus} SCOP:
d.2.1.2 PDB: 3b6l_A 1lsy_A 1lsz_A*
Length = 147
Score = 108 bits (271), Expect = 9e-28
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 264 LVLVYCTLLPRQIEGKRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSP 321
L+++ LP GK FG CELA + R + WVC A ESN N+ A +
Sbjct: 4 LLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNR 63
Query: 322 KNGNGSRDHGIFQINDKYWCTASGPAGKE--CHAKCSSFEDNNITDDVACVVKIHSQTQR 379
N +GS D+GI QIN ++WC G C+ CS+ ++IT V C KI S
Sbjct: 64 -NTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN- 121
Query: 380 ARGNGFQAWSTY-HYCNTNSKVSTY 403
G AW + + C + V +
Sbjct: 122 ----GMNAWVAWRNRCK-GTDVQAW 141
Score = 68.6 bits (167), Expect = 8e-14
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 15 GSRDHGIFQINDKYWCTASGPAGKE--CHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS D+GI QIN ++WC G C+ CS+ ++IT V C KI S
Sbjct: 67 GSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN----- 121
Query: 73 GFQAWSTY-HYCNTNSKVSTY 92
G AW + + C + V +
Sbjct: 122 GMNAWVAWRNRCK-GTDVQAW 141
>2gv0_A Lysozyme C; hydrolase; 1.90A {Pelodiscus sinensis}
Length = 131
Score = 107 bits (267), Expect = 2e-27
Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 278 GKRFGACELAKFLVRQ--RGIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQI 335
GK + CELA+ R G + WVC A ESN N+ A + G+ S D+GI QI
Sbjct: 1 GKIYEQCELAREFKRHGMDGYHGYSLGDWVCTAKHESNFNTAATNYNRGDQSTDYGILQI 60
Query: 336 NDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-H 392
N ++WC + A C +CS +IT V C +I G AW +
Sbjct: 61 NSRWWCNDGKTPKAKNACGIECSELLKADITAAVNCAKRIVRDPN-----GMGAWVAWTK 115
Query: 393 YCNTNSKVSTY 403
YC VS +
Sbjct: 116 YCK-GKDVSQW 125
Score = 66.6 bits (162), Expect = 2e-13
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 15 GSRDHGIFQINDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
S D+GI QIN ++WC + A C +CS +IT V C +I
Sbjct: 51 QSTDYGILQINSRWWCNDGKTPKAKNACGIECSELLKADITAAVNCAKRIVRDPN----- 105
Query: 73 GFQAWSTY-HYCNTNSKVSTY 92
G AW + YC VS +
Sbjct: 106 GMGAWVAWTKYCK-GKDVSQW 125
>2goi_A Sperm lysozyme-like protein 1; mouse SLLP1, MSLLP1, sperm C-type
lysozyme-like protein 1, acrosomal sperm protein,
sperm-egg binding, fertilization; 2.30A {Mus musculus}
Length = 138
Score = 107 bits (267), Expect = 2e-27
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 278 GKRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQI 335
K F CELAK + G ++ WVC+A S N+NA +GS ++GIFQI
Sbjct: 2 AKVFSRCELAKEMHDFGLDGYRGYNLADWVCLAYYTSGFNTNAVDH-EADGSTNNGIFQI 60
Query: 336 NDKYWCTASGPAGK-ECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HY 393
+ + WC G C C+ +N++ D + C +KI + G W + H+
Sbjct: 61 SSRRWCRTLASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPL-----GLGYWEAWRHH 115
Query: 394 C 394
C
Sbjct: 116 C 116
Score = 69.7 bits (170), Expect = 2e-14
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 15 GSRDHGIFQINDKYWCTASGPAGK-ECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNG 73
GS ++GIFQI+ + WC G C C+ +N++ D + C +KI + G
Sbjct: 51 GSTNNGIFQISSRRWCRTLASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPL-----G 105
Query: 74 FQAWSTY-HYC 83
W + H+C
Sbjct: 106 LGYWEAWRHHC 116
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase
activator/transferase complex; HET: GDU UDP MES PG4;
1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A*
1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A*
2fyc_A* 2fyd_A*
Length = 123
Score = 106 bits (265), Expect = 2e-27
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 280 RFGACELAKFLVRQRGIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQINDKY 339
C+++ + G + W C+ S ++ A NGS ++G+FQI+D++
Sbjct: 2 ELTKCKVSHAIKDIDGYQGISLLEWACVLFHTSGYDTQAVVND--NGSTEYGLFQISDRF 59
Query: 340 WCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HYC 394
WC + C C D+ + DD+AC KI + G W Y C
Sbjct: 60 WCKSSEFPESENICGISCDKLLDDELDDDIACAKKILAI------KGIDYWKAYKPMC 111
Score = 67.4 bits (164), Expect = 1e-13
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 15 GSRDHGIFQINDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS ++G+FQI+D++WC + C C D+ + DD+AC KI +
Sbjct: 46 GSTEYGLFQISDRFWCKSSEFPESENICGISCDKLLDDELDDDIACAKKILAI------K 99
Query: 73 GFQAWSTY-HYC 83
G W Y C
Sbjct: 100 GIDYWKAYKPMC 111
>2nwd_X Lysozyme C; native chemical ligation, chemical protein synthesis,
convergent synthesis, hydrolase; 1.04A {Synthetic} SCOP:
d.2.1.2 PDB: 1iwu_A 1iwv_A 1iww_A 1iwx_A 1iwy_A 1iwz_A
1iy3_A 1iy4_A 1iwt_A 1jwr_A 1lz1_A 1lzr_A* 1lzs_A*
1op9_B 1re2_A* 1rem_A* 1rex_A 1rey_A* 1rez_A* 1jsf_A ...
Length = 130
Score = 105 bits (262), Expect = 8e-27
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 279 KRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQIN 336
K F CELA+ L R G + W+C+A ES N+ A + G+ S D+GIFQIN
Sbjct: 1 KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQIN 60
Query: 337 DKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HY 393
+YWC + A CH CS+ +NI D VAC ++ Q G +AW + +
Sbjct: 61 SRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQ-----GIRAWVAWRNR 115
Query: 394 C 394
C
Sbjct: 116 C 116
Score = 65.8 bits (160), Expect = 4e-13
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 15 GSRDHGIFQINDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
S D+GIFQIN +YWC + A CH CS+ +NI D VAC ++ Q
Sbjct: 50 RSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQ----- 104
Query: 73 GFQAWSTY-HYC 83
G +AW + + C
Sbjct: 105 GIRAWVAWRNRC 116
>2z2f_A Lysozyme C-2; stomach lysozyme, 1,4-beta-N-acetylmuramidase C,
bacteriolytic enzyme, hydrolase; 1.50A {Bos taurus}
Length = 129
Score = 104 bits (261), Expect = 1e-26
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 279 KRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQIN 336
K F CELA+ L + G + W+C+ ES+ N+ A + + S D+GIFQIN
Sbjct: 1 KVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQIN 60
Query: 337 DKYWCTASGPAGKE--CHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HY 393
K+WC CH CS +N+I VAC I S+ G AW + +
Sbjct: 61 SKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSE------QGITAWVAWKSH 114
Query: 394 C 394
C
Sbjct: 115 C 115
Score = 65.1 bits (158), Expect = 8e-13
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 15 GSRDHGIFQINDKYWCTASGPAGKE--CHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
S D+GIFQIN K+WC CH CS +N+I VAC I S+
Sbjct: 50 ESTDYGIFQINSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSE------Q 103
Query: 73 GFQAWSTY-HYC 83
G AW + +C
Sbjct: 104 GITAWVAWKSHC 115
>1b9o_A Protein (alpha-lactalbumin); calcium-binding protein, high
resolution; 1.15A {Homo sapiens} SCOP: d.2.1.2 PDB:
1a4v_A 1alc_A 1hmk_A 1hfy_A 1f6r_A 1f6s_A 2g4n_A 1fkq_A
1fkv_A 1hfz_A 1hfx_A
Length = 123
Score = 104 bits (260), Expect = 1e-26
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 279 KRFGACELAKFLVRQRGIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQINDK 338
K+F CEL++ L G +P +C S ++ A + S ++G+FQI++K
Sbjct: 1 KQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVEN--DESTEYGLFQISNK 58
Query: 339 YWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HYC 394
WC + C C F D++ITDD+ C KI G W + C
Sbjct: 59 LWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDI------KGIDYWLAHKALC 111
Score = 65.1 bits (158), Expect = 6e-13
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 14 RGSRDHGIFQINDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARG 71
S ++G+FQI++K WC + C C F D++ITDD+ C KI
Sbjct: 45 DESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDI------ 98
Query: 72 NGFQAWSTY-HYC 83
G W + C
Sbjct: 99 KGIDYWLAHKALC 111
>1jug_A Lysozyme; calcium-binding; 1.90A {Tachyglossus aculeatus} SCOP:
d.2.1.2
Length = 125
Score = 104 bits (260), Expect = 1e-26
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 279 KRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQIN 336
K EL K LV Q G +P WVC A ES+ N+ A + N +GS D+GI QIN
Sbjct: 1 KILKKQELCKNLVAQGMNGYQHITLPNWVCTAFHESSYNTRATNH-NTDGSTDYGILQIN 59
Query: 337 DKYWCTAS--GPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HY 393
+YWC + C+ CS D++ITDD+ C KI + + G W +
Sbjct: 60 SRYWCHDGKTPGSKNACNISCSKLLDDDITDDLKCAKKIAGEAK-----GLTPWVAWKSK 114
Query: 394 C 394
C
Sbjct: 115 C 115
Score = 67.8 bits (165), Expect = 8e-14
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 15 GSRDHGIFQINDKYWCTAS--GPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS D+GI QIN +YWC + C+ CS D++ITDD+ C KI + +
Sbjct: 49 GSTDYGILQINSRYWCHDGKTPGSKNACNISCSKLLDDDITDDLKCAKKIAGEAK----- 103
Query: 73 GFQAWSTY-HYC 83
G W + C
Sbjct: 104 GLTPWVAWKSKC 115
>1lsg_A Hen egg white lysozyme; fibrinogen, hybrid protein; 2.40A {Gallus
gallus} SCOP: d.2.1.2
Length = 144
Score = 104 bits (259), Expect = 3e-26
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 279 KRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQIN 336
K FG CELA + R + WVC A ESN N+ A + N +GS D+GI QIN
Sbjct: 2 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNR-NTDGSTDYGILQIN 60
Query: 337 DKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HY 393
++WC + + C+ CS+ ++IT V C KI S G AW + +
Sbjct: 61 SRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN-----GMNAWVAWRNR 115
Query: 394 CNTNSKVSTY 403
C + V +
Sbjct: 116 CK-GTDVQAW 124
Score = 69.0 bits (168), Expect = 5e-14
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 15 GSRDHGIFQINDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS D+GI QIN ++WC + + C+ CS+ ++IT V C KI S
Sbjct: 50 GSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN----- 104
Query: 73 GFQAWSTY-HYCNTNSKVSTY 92
G AW + + C + V +
Sbjct: 105 GMNAWVAWRNRCK-GTDVQAW 124
>2vb1_A Lysozyme C; antimicrobial, triclinic HEWL, atomic resolution,
allergen, hydrolase, glycosidase, bacteriolytic enzyme;
HET: EDO; 0.65A {Gallus gallus} SCOP: d.2.1.2 PDB:
194l_A 1aki_A 1azf_A 1b0d_A* 1b2k_A 1bgi_A 1bhz_A 1bvk_C
1bvx_A 1bwh_A 1bwi_A 1bwj_A 1c08_C 1c10_A 1dpw_A 1dpx_A
1dqj_C 1e8l_A 1f0w_A 1f10_A ...
Length = 129
Score = 102 bits (256), Expect = 5e-26
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 279 KRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQIN 336
K FG CELA + R + WVC A ESN N+ A + N +GS D+GI QIN
Sbjct: 1 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNR-NTDGSTDYGILQIN 59
Query: 337 DKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HY 393
++WC + + C+ CS+ ++IT V C KI S G AW + +
Sbjct: 60 SRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN-----GMNAWVAWRNR 114
Query: 394 CNTNSKVSTY 403
C + V +
Sbjct: 115 CK-GTDVQAW 123
Score = 67.8 bits (165), Expect = 9e-14
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 15 GSRDHGIFQINDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS D+GI QIN ++WC + + C+ CS+ ++IT V C KI S
Sbjct: 49 GSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN----- 103
Query: 73 GFQAWSTY-HYCNTNSKVSTY 92
G AW + + C + V +
Sbjct: 104 GMNAWVAWRNRCK-GTDVQAW 123
>1lmq_A Lysozyme; hydrolase (O-glycosyl); HET: NAG NDG; 1.60A {Oncorhynchus
mykiss} SCOP: d.2.1.2 PDB: 1bb7_A* 1lmc_A* 1bb6_A
1lmo_A* 1lmp_A* 1lmn_A*
Length = 129
Score = 102 bits (255), Expect = 8e-26
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 279 KRFGACELAKFLVRQR--GIARRDVPTWVCIATKESNRNSNARSPKNGNGSRDHGIFQIN 336
K + CELA+ L G A +P WVC++ ES+ N+ A + N +GS D+GIFQIN
Sbjct: 1 KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNR-NTDGSTDYGIFQIN 59
Query: 337 DKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGNGFQAWSTY-HY 393
+YWC + A C +CS +++T + C ++ G AW + +
Sbjct: 60 SRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDPN-----GIGAWVAWRLH 114
Query: 394 C 394
C
Sbjct: 115 C 115
Score = 65.5 bits (159), Expect = 6e-13
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 15 GSRDHGIFQINDKYWCT--ASGPAGKECHAKCSSFEDNNITDDVACVVKIHSQTQRARGN 72
GS D+GIFQIN +YWC + A C +CS +++T + C ++
Sbjct: 49 GSTDYGIFQINSRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDPN----- 103
Query: 73 GFQAWSTY-HYC 83
G AW + +C
Sbjct: 104 GIGAWVAWRLHC 115
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 68.0 bits (167), Expect = 8e-14
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 624 DGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKG--GTV 681
+ SF C C + +TG C+ + CV+ NPCQN+ATC+ G+ C+C+ G G
Sbjct: 23 NTLGSFECQCLQGYTGPRCE-IDVNECVS-NPCQNDATCLDQIGE--FQCICMPGYEGV- 77
Query: 682 SSEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
+C+ N+ C + +PC +N C+ + C C GF G
Sbjct: 78 ---HCE-VNTDECAS-SPCLHNGRCLDKINE--FQCECPTGFTGHL 116
Score = 53.8 bits (130), Expect = 8e-09
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLNPCQNNATCVASPGDK 713
NPC++ C+ + G C CL+G T C+ + CV+ NPCQN+ATC+ G+
Sbjct: 13 NPCEHAGKCINTLGS--FECQCLQGYT--GPRCE-IDVNECVS-NPCQNDATCLDQIGE- 65
Query: 714 QITCLCLKGFEGPH 727
C+C+ G+EG H
Sbjct: 66 -FQCICMPGYEGVH 78
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C PC+N+ TC G F C C G +G
Sbjct: 48 CVSNPCQNDATCLDQIGE---FQCICMPGYEGV 77
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSG 546
CA PC +NG C + F C CP+G
Sbjct: 86 CASSPCLHNGRCL---DKINEFQCECPTG 111
Score = 36.0 bits (84), Expect = 0.012
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
PC + G C G F C C G G
Sbjct: 10 LGANPCEHAGKCINTLGS---FECQCLQGYTGP 39
Score = 29.9 bits (68), Expect = 1.4
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 624 DGNLSFYCNCTEDFTGEYCQFE----NSAACVTLNPCQNN 659
D F C C FTG CQ + A N+
Sbjct: 99 DKINEFQCECPTGFTGHLCQVDLHHILDAQK----MVWNH 134
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 66.2 bits (162), Expect = 3e-13
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 9/112 (8%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
+ + + + C T +PCQN C G+ TC CL+G + C+
Sbjct: 24 EVFEDSDKTNEFWNKYKDGDQ-CET-SPCQNQGKCKDGLGE--YTCTCLEGFE--GKNCE 77
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDEPP 739
C +L+ + C + C C +G+ P
Sbjct: 78 LFTRKLC-SLDNGDCDQFCHEEQNS--VVCSCARGYTLADNGKACIPTGPYP 126
Score = 58.1 bits (141), Expect = 3e-10
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVS 682
KDG + C C E F G+ C+ C +L+ + C + C C +G T
Sbjct: 57 KDGLGEYTCTCLEGFEGKNCELFTRKLC-SLDNGDCDQFCHEEQNS--VVCSCARGYT-- 111
Query: 683 SEYCQFENSAACVTLNPCQNNATC 706
+ PC
Sbjct: 112 LADNG-KACIPTGP-YPCGKQTLE 133
Score = 37.7 bits (88), Expect = 0.003
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C PC+N G C G+ +TCTC G +G+
Sbjct: 45 CETSPCQNQGKCKD---GLGEYTCTCLEGFEGK 74
Score = 36.1 bits (84), Expect = 0.010
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSG 546
C+ + C C+C G
Sbjct: 84 CSLDNGDCDQFCHEEQNS---VVCSCARG 109
Score = 31.9 bits (73), Expect = 0.26
Identities = 3/35 (8%), Positives = 5/35 (14%), Gaps = 3/35 (8%)
Query: 517 GCAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQS 551
G R C + +
Sbjct: 6 GHLERECMEETCSY---EEAREVFEDSDKTNEFWN 37
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 63.6 bits (155), Expect = 3e-12
Identities = 31/122 (25%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTL----------NPCQNNATCVASPGDKQI-----T 672
SF C C + FT C A NPC N TC S +
Sbjct: 22 SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV 81
Query: 673 CLCLKG--GTVSSEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHREL 730
C C +G G +CQ N C PC+N C + +C C F G + +
Sbjct: 82 CKCPRGFNGI----HCQ-HNINECEV-EPCKNGGICTDLVAN--YSCECPGEFMGRNCQY 133
Query: 731 PV 732
Sbjct: 134 KG 135
Score = 57.8 bits (140), Expect = 4e-10
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKGGT---------VSSEYCQFENSAACVTLNPCQNNA 704
NPC+N C+ D +C C G T V+S+ + ++ C NPC N
Sbjct: 6 NPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP-NPCHNGG 64
Query: 705 TCVASPGDKQI-----TCLCLKGFEGPH 727
TC S + C C +GF G H
Sbjct: 65 TCEISEAYRGDTFIGYVCKCPRGFNGIH 92
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 616 QQNISPLKDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLC 675
+ + + D + + C C F G +CQ N C PC+N C + +C C
Sbjct: 67 EISEAYRGDTFIGYVCKCPRGFNGIHCQ-HNINECEV-EPCKNGGICTDLVAN--YSCEC 122
Query: 676 LKGGTVSSEYCQFENSAACVTLNPCQNN 703
CQ++ ++
Sbjct: 123 PGE--FMGRNCQYK-------GGGHHHH 141
Score = 42.8 bits (101), Expect = 6e-05
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 698 NPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDEPPSEDET 744
NPC+N C+ D +C C GF P+ VE +
Sbjct: 6 NPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSA 52
Score = 39.7 bits (93), Expect = 7e-04
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 518 CAGRPCRNNGTCTPVSG----GVVNFTCTCPSG 546
C PC N GTC + + C CP G
Sbjct: 55 CTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRG 87
Score = 38.9 bits (91), Expect = 0.001
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C PC N G C P +F+C CP G
Sbjct: 3 CDPNPCENGGICLPGLAD-GSFSCECPDGFTDP 34
Score = 38.9 bits (91), Expect = 0.001
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSG 546
C PC+N G CT V N++C CP
Sbjct: 100 CEVEPCKNGGICT---DLVANYSCECPGE 125
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 63.6 bits (155), Expect = 1e-11
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
+ + + + C T +PCQN C G+ TC CL+G + C+
Sbjct: 24 EVFEDSDKTNEFWNKYKDGDQ-CET-SPCQNQGKCKDGLGE--YTCTCLEG--FEGKNCE 77
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDEPP 739
C + + C + C C +G+ P
Sbjct: 78 LFTRKLCSL-DNGDCDQFCHEEQNS--VVCSCARGYTLADNGKACIPTGPYP 126
Score = 62.8 bits (153), Expect = 2e-11
Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 9/103 (8%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVS 682
KDG + C C E F G+ C+ C + + C + C C +G T
Sbjct: 57 KDGLGEYTCTCLEGFEGKNCELFTRKLCSL-DNGDCDQFCHEEQNS--VVCSCARGYT-- 111
Query: 683 SEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEG 725
+ PC G
Sbjct: 112 LADNG-KACIPTGP-YPCGKQTLERRKRSVA--QATSSSGEAP 150
Score = 55.9 bits (135), Expect = 5e-09
Identities = 11/85 (12%), Positives = 20/85 (23%), Gaps = 7/85 (8%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVS 682
+ S C+C +T + PC G
Sbjct: 96 HEEQNSVVCSCARGYTLADNG-KACIPTGP-YPCGKQTLERRKRSVA--QATSSSGEAPD 151
Query: 683 SEYCQFENSAACVTLNPCQNNATCV 707
S + + L+P +N +
Sbjct: 152 SITWKPYD---AADLDPTENPFDLL 173
Score = 36.7 bits (85), Expect = 0.014
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C PC+N G C G +TCTC G +G+
Sbjct: 45 CETSPCQNQGKCKDGLGE---YTCTCLEGFEGK 74
Score = 36.3 bits (84), Expect = 0.019
Identities = 5/33 (15%), Positives = 8/33 (24%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C+ + C C+C G
Sbjct: 84 CSLDNGDCDQFCHEEQNS---VVCSCARGYTLA 113
Score = 34.3 bits (79), Expect = 0.069
Identities = 3/47 (6%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 617 QNISPLKDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 663
+ + + + ++ A +P +N +
Sbjct: 128 GKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADL-DPTENPFDLL 173
Score = 31.6 bits (72), Expect = 0.58
Identities = 6/34 (17%), Positives = 6/34 (17%), Gaps = 3/34 (8%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQS 551
PC T SG S
Sbjct: 122 TGPYPCGKQTLERR---KRSVAQATSSSGEAPDS 152
Score = 28.2 bits (63), Expect = 7.4
Identities = 3/34 (8%), Positives = 4/34 (11%), Gaps = 3/34 (8%)
Query: 517 GCAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
G R C +
Sbjct: 6 GHLERECMEETCSY---EEAREVFEDSDKTNEFW 36
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 60.5 bits (147), Expect = 8e-11
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C C + G YC C+ +P + C CLC + C
Sbjct: 82 PGDCRCQYGWQGLYCD-----KCIP-HPGCVHGICNEP-----WQCLCETNWG--GQLCD 128
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
++ C T PC N TC + G + C C +G+ GP+
Sbjct: 129 -KDLNYCGTHQPCLNGGTCS-NTGPDKYQCSCPEGYSGPN 166
Score = 48.5 bits (116), Expect = 9e-07
Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 22/102 (21%)
Query: 626 NLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEY 685
+ + C E + G C A C + +C C C G Y
Sbjct: 47 DQNGNKTCMEGWMGPECN---RAICRQ-GCSPKHGSCKLPG-----DCRCQYGWQ--GLY 95
Query: 686 CQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
C C+ +P + C CLC + G
Sbjct: 96 CD-----KCIP-HPGCVHGICNEP-----WQCLCETNWGGQL 126
Score = 48.5 bits (116), Expect = 1e-06
Identities = 14/100 (14%), Positives = 23/100 (23%), Gaps = 20/100 (20%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C + + G C G C++G C
Sbjct: 16 RSAVTCDDYYYGFGCNKFCRP-----RDDFFGHYACDQNG----NKTCMEGWM--GPECN 64
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
A C + +C C C G++G +
Sbjct: 65 ---RAICRQ-GCSPKHGSCKLPG-----DCRCQYGWQGLY 95
Score = 38.1 bits (89), Expect = 0.003
Identities = 7/74 (9%), Positives = 14/74 (18%), Gaps = 16/74 (21%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLNPCQNNATCVASPGDK 713
+ ++ + C C G
Sbjct: 5 HHHHHHGSIEGR-----SAVTCDDYYY--GFGCNKFCRP-----RDDFFGHYACDQNG-- 50
Query: 714 QITCLCLKGFEGPH 727
C++G+ GP
Sbjct: 51 --NKTCMEGWMGPE 62
Score = 33.5 bits (77), Expect = 0.11
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSG 546
+PC N GTC + G + C+CP G
Sbjct: 135 GTHQPCLNGGTC--SNTGPDKYQCSCPEG 161
Score = 31.2 bits (71), Expect = 0.74
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 6/29 (20%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSG 546
C P +G C + C C +
Sbjct: 99 CIPHPGCVHGIC------NEPWQCLCETN 121
Score = 29.6 bits (67), Expect = 2.0
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C +G+C + C C G QG
Sbjct: 68 CRQGCSPKHGSC------KLPGDCRCQYGWQGL 94
Score = 28.5 bits (64), Expect = 5.4
Identities = 3/29 (10%), Positives = 6/29 (20%), Gaps = 6/29 (20%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSG 546
++G+ TC
Sbjct: 2 RGSHHHHHHGSIEG------RSAVTCDDY 24
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 57.9 bits (140), Expect = 4e-09
Identities = 27/112 (24%), Positives = 34/112 (30%), Gaps = 25/112 (22%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
+C C F G C C N TC C+C G E C+
Sbjct: 196 PGFCICPPGFYGVNCDK-----ANCSTTCFNGGTCFYPG-----KCICPPGLE--GEQCE 243
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDEPP 739
PC+N C+ C C KG++G P V EP
Sbjct: 244 I-----SKCPQPCRNGGKCIGKS-----KCKCSKGYQGDLCSKP---VCEPG 282
Score = 55.6 bits (134), Expect = 2e-08
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 22/104 (21%)
Query: 624 DGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSS 683
+ + CQ A C C+N C C C G
Sbjct: 128 SEGNTILKTPQNAIFFKTCQ---QAEC--PGGCRNGGFCNERR-----ICECPDGFH--G 175
Query: 684 EYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
+C+ + C N CV C+C GF G +
Sbjct: 176 PHCE-----KALCTPRCMNGGLCVTPG-----FCICPPGFYGVN 209
Score = 55.6 bits (134), Expect = 2e-08
Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 22/100 (22%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C C GE C+ PC+N C+ C C KG + C
Sbjct: 228 PGKCICPPGLEGEQCEI-----SKCPQPCRNGGKCIGKS-----KCKCSKGYQ--GDLCS 275
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
V C + TC C C +G+ G H
Sbjct: 276 KP-----VCEPGCGAHGTCHEPN-----KCQCQEGWHGRH 305
Score = 55.6 bits (134), Expect = 2e-08
Identities = 22/100 (22%), Positives = 28/100 (28%), Gaps = 22/100 (22%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C C + F G +C+ + C N CV C+C G C
Sbjct: 164 RRICECPDGFHGPHCE-----KALCTPRCMNGGLCVTPG-----FCICPPGFY--GVNCD 211
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
C N TC C+C G EG
Sbjct: 212 K-----ANCSTTCFNGGTCFYPG-----KCICPPGLEGEQ 241
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/117 (17%), Positives = 26/117 (22%), Gaps = 26/117 (22%)
Query: 616 QQNISPLKDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLC 675
P K + C G V + I
Sbjct: 92 LLGTVPHKASVVQVGFPCLGKQDG--------------VAAFEVDVIVMNSEGNTILKTP 137
Query: 676 LKGGTVSSEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPV 732
+ CQ A C C+N C C C GF GPH E +
Sbjct: 138 QNAIF--FKTCQ---QAEC--PGGCRNGGFCNERR-----ICECPDGFHGPHCEKAL 182
Score = 40.2 bits (94), Expect = 0.002
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 14/76 (18%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C C++ + G+ C V C + TC C C +G +C
Sbjct: 260 KSKCKCSKGYQGDLCSKP-----VCEPGCGAHGTCHEPN-----KCQCQEGWH--GRHCN 307
Query: 688 FENSAACVTLNPCQNN 703
+ A + ++
Sbjct: 308 -KRYEASLI-GTKHHH 321
Score = 33.3 bits (76), Expect = 0.25
Identities = 6/76 (7%), Positives = 11/76 (14%), Gaps = 7/76 (9%)
Query: 652 TLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLNPCQNNATCVASPG 711
+L+ V P + +V V +
Sbjct: 77 SLDKGIMADPTVNVPLLGTVPHKA----SVVQVGFPCLGKQDG---VAAFEVDVIVMNSE 129
Query: 712 DKQITCLCLKGFEGPH 727
I
Sbjct: 130 GNTILKTPQNAIFFKT 145
Score = 30.2 bits (68), Expect = 2.4
Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C N G C V C CP G G
Sbjct: 182 LCTPRCMNGGLC------VTPGFCICPPGFYGV 208
Score = 29.8 bits (67), Expect = 3.3
Identities = 10/29 (34%), Positives = 10/29 (34%), Gaps = 6/29 (20%)
Query: 522 PCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
CRN G C C CP G G
Sbjct: 154 GCRNGGFCNE------RRICECPDGFHGP 176
Score = 29.8 bits (67), Expect = 3.4
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C N GTC C CP G +G+
Sbjct: 214 NCSTTCFNGGTC------FYPGKCICPPGLEGE 240
Score = 29.0 bits (65), Expect = 5.1
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 522 PCRNNGTCTPVSGGVVNFTCTCPSG 546
PCRN G C + C C G
Sbjct: 250 PCRNGGKC------IGKSKCKCSKG 268
Score = 28.7 bits (64), Expect = 7.2
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 6/25 (24%)
Query: 522 PCRNNGTCTPVSGGVVNFTCTCPSG 546
C +GTC C C G
Sbjct: 282 GCGAHGTC------HEPNKCQCQEG 300
Score = 28.7 bits (64), Expect = 7.3
Identities = 4/36 (11%), Positives = 8/36 (22%), Gaps = 1/36 (2%)
Query: 515 LGGCAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
LG G ++ T + +
Sbjct: 110 LGKQDGVAAFEVDVIV-MNSEGNTILKTPQNAIFFK 144
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 52.7 bits (127), Expect = 2e-08
Identities = 17/111 (15%), Positives = 29/111 (26%), Gaps = 10/111 (9%)
Query: 629 FYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQF 688
+ N + + C NPC N C C C G + C+
Sbjct: 31 VFENTEKTNEFWKQY-VDGDQC-EPNPCLNGGLCKDDINS--YECWCQVGFE--GKNCEL 84
Query: 689 ENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDEPP 739
+ + C N + + C C G+ + + P
Sbjct: 85 DAT--CNIKNGRCKQFCKTGADSK--VLCSCTTGYRLAPDQKSCKPAVPFP 131
Score = 52.4 bits (126), Expect = 3e-08
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVS 682
KD S+ C C F G+ C+ + + C N + + C C G
Sbjct: 63 KDDINSYECWCQVGFEGKNCELDAT--CNIKNGRCKQFCKTGADSK--VLCSCTTGYR-- 116
Query: 683 SEYCQFENSAACVTLNPCQNNATCVAS 709
Q ++ V PC + +
Sbjct: 117 LAPDQ-KSCKPAVP-FPCGRVSVSHSP 141
Score = 38.1 bits (89), Expect = 0.003
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C PC N G C + ++ C C G +G+
Sbjct: 51 CEPNPCLNGGLCK---DDINSYECWCQVGFEGK 80
Score = 31.2 bits (71), Expect = 0.61
Identities = 4/34 (11%), Positives = 7/34 (20%), Gaps = 3/34 (8%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQS 551
T C+C +G +
Sbjct: 89 NIKNGRCKQFCKTGADSK---VLCSCTTGYRLAP 119
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 48.5 bits (116), Expect = 5e-07
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 12/114 (10%)
Query: 629 FYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQF 688
+ + + C + +PCQN +C C CL C+
Sbjct: 30 IFKDAERTKLFWISYSDGDQ-CAS-SPCQNGGSCKDQLQS--YICFCLPAFE--GRNCE- 82
Query: 689 ENSAACVTLNPCQN---NATCVASPGDKQITCLCLKGFEGPHRELPVESVDEPP 739
+ + +N C G K +C C +G+ + E P
Sbjct: 83 THKDDQLI-CVNENGGCEQYCSDHTGTK-RSCRCHEGYSLLADGVSCTPTVEYP 134
Score = 40.8 bits (96), Expect = 3e-04
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQN---NATCVASPGDKQITCLCLKGG 679
KD S+ C C F G C+ + + +N C G K +C C +G
Sbjct: 62 KDQLQSYICFCLPAFEGRNCE-THKDDQLI-CVNENGGCEQYCSDHTGTK-RSCRCHEGY 118
Query: 680 TVSSEYCQFENSAACVTLNPCQNNATC 706
+ + V PC
Sbjct: 119 S--LLADG-VSCTPTVE-YPCGKIPIL 141
Score = 36.5 bits (85), Expect = 0.008
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
CA PC+N G+C + C C +G+
Sbjct: 50 CASSPCQNGGSCKDQLQS---YICFCLPAFEGR 79
Score = 29.6 bits (67), Expect = 1.9
Identities = 6/30 (20%), Positives = 7/30 (23%), Gaps = 1/30 (3%)
Query: 518 CAGRPCRNNGTCTPVSGGVVN-FTCTCPSG 546
N G S +C C G
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEG 117
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 51.6 bits (123), Expect = 6e-07
Identities = 27/126 (21%), Positives = 35/126 (27%), Gaps = 21/126 (16%)
Query: 626 NLSFYCNCTEDFTGEYCQ---------FENSAACVTLNPCQNNATCVASPGDKQITCLCL 676
+ C C F G C+ C C++ C+ P C C
Sbjct: 213 EDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPY----GCSCA 268
Query: 677 KG--GTVSSEYCQFENS-AACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVE 733
G G +E C C C N C G CLC G++G E
Sbjct: 269 TGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-----CLCSPGWQGLQCEREGI 323
Query: 734 SVDEPP 739
P
Sbjct: 324 PRMTPK 329
Score = 47.8 bits (113), Expect = 9e-06
Identities = 21/107 (19%), Positives = 27/107 (25%), Gaps = 14/107 (13%)
Query: 628 SFYCNCTEDFTGEYCQFE-----NSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVS 682
+ C+C + G C C C N C G CLC G
Sbjct: 262 PYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-----CLCSPG--WQ 314
Query: 683 SEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRE 729
C+ E T + G C G+ P E
Sbjct: 315 GLQCEREGIPRM-TPKIVDLPDHIEVNSGKFNPICKA-SGWPLPTNE 359
Score = 46.6 bits (110), Expect = 2e-05
Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 22/106 (20%)
Query: 629 FYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKG--GTVSSEYC 686
C G C + C C NN C G C+C G G + C
Sbjct: 185 IVRRCEAQKWGPEC----NHLC---TACMNNGVCHEDTG----ECICPPGFMGRTCEKAC 233
Query: 687 Q-----FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
+ C C++ C+ P C C G++G
Sbjct: 234 ELHTFGRTCKERCSGQEGCKSYVFCLPDPY----GCSCATGWKGLQ 275
Score = 42.8 bits (100), Expect = 3e-04
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 20/105 (19%)
Query: 631 CNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKG--GTVSSEYCQF 688
+ + Q +++ + S + I C G + C
Sbjct: 148 VPDILEVHLPHAQPQDAGVY---SARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLC-- 202
Query: 689 ENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVE 733
C NN C G C+C GF G E E
Sbjct: 203 ---------TACMNNGVCHEDTG----ECICPPGFMGRTCEKACE 234
Score = 39.3 bits (91), Expect = 0.004
Identities = 10/90 (11%), Positives = 18/90 (20%), Gaps = 7/90 (7%)
Query: 631 CNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFEN 690
C C+ + G C+ E T + G C S
Sbjct: 307 CLCSPGWQGLQCEREGIPRM-TPKIVDLPDHIEVNSGKFNPICKA------SGWPLPTNE 359
Query: 691 SAACVTLNPCQNNATCVASPGDKQITCLCL 720
V + + + +
Sbjct: 360 EMTLVKPDGTVLHPKDFNHTDHFSVAIFTI 389
Score = 32.4 bits (73), Expect = 0.64
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C NNG C +G C CP G G+
Sbjct: 200 HLCTACMNNGVCHEDTG-----ECICPPGFMGR 227
Score = 28.9 bits (64), Expect = 6.9
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 520 GRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C++ C P C+C +G +G
Sbjct: 249 QEGCKSYVFCLPDPY-----GCSCATGWKGL 274
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 47.7 bits (114), Expect = 2e-06
Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLN--PCQNNATCVASPGDKQITCLCLKGGTVSSEY 685
S+ C+C DF + CV C + GD C G VS
Sbjct: 23 SYICDCPPDFELNPTRVG----CVDTRSGNCYLDIRPRGDNGD--TACSNEIGVGVSKAS 76
Query: 686 CQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDE 737
C A PC+ S +I C +GF + +E +DE
Sbjct: 77 CCCSLGKAW--GTPCEMCPAVNTSEY--KILCPGGEGFRPNPITVILEDIDE 124
Score = 35.4 bits (82), Expect = 0.022
Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 4/98 (4%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C+ S PC+ S +I C +G +
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEY--KILCPGGEGFRPNPITVI 118
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEG 725
E+ C L C+ + G C C G+
Sbjct: 119 LEDIDECQELPGLCQGGKCINTFGS--FQCRCPTGYYL 154
Score = 28.9 bits (65), Expect = 3.8
Identities = 5/34 (14%), Positives = 6/34 (17%), Gaps = 3/34 (8%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQS 551
G PC C G +
Sbjct: 84 AWGTPCEMCPAVNTSEYK---ILCPGGEGFRPNP 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 4e-06
Identities = 74/448 (16%), Positives = 135/448 (30%), Gaps = 93/448 (20%)
Query: 61 KIHSQTQRARGNGFQAWSTYH--YCNTNSKVSTYYSSSFNCLVLICFLSCILK-SSTLNS 117
I ++ R + + N N + Y + L LK L
Sbjct: 97 PIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYN---------VSRLQPYLKLRQALLE 146
Query: 118 LRSLGGGFTGFHSGQMSGLARYGGVSPSTILCIKVSTLSRILIYI-FKI-W-----CKTH 170
LR G + G + T + + V ++ + FKI W C +
Sbjct: 147 LRP--AKNVLID-G-VLGSGK-------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 171 MA-LSRLTPRYLHVD-TYSKISDPIFTDRFRDRIWFLALLINLSSFFVSVPL--MLISL- 225
L L +D ++ SD + R ++ L S P L+ L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR----IHSIQAELRRLLKSKPYENCLLVLL 251
Query: 226 --EIFKELNGLNFRIKVFSHCRNEG-----RPQSAMHFSPIAACLLVLVYCTLLPRQIEG 278
+ K N N K+ R + + H S L TL P +++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS------LDHHSMTLTPDEVKS 305
Query: 279 KRFGACELAKFLVRQRGIARRDVPTWVC---------IATKESNRNSNARSP--KNGNGS 327
L K+L +D+P V IA ES R+ A K+ N
Sbjct: 306 L------LLKYL----DCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCD 353
Query: 328 RDHGIFQINDKYWCTAS-GPAG-KECHAKCSSFEDN-NITDDVACVV--KIHSQTQRARG 382
+ I + PA ++ + S F + +I + ++ +
Sbjct: 354 KLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 383 NGFQAWSTYHYCNTNSKVSTYDHADDMGEVSACACYMH---VNYLGSSLKLETVLMSSEK 439
N +S S +S ++ +H V++ ++ +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 440 I---FISYSSTHHISKMANKFKFNLFKD 464
+ F S+ HH+ + + + LF+
Sbjct: 469 LDQYFYSHIG-HHLKNIEHPERMTLFRM 495
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 44.8 bits (106), Expect = 4e-06
Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 17/107 (15%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
S+ C ++ T Q S L P ++ C C G C
Sbjct: 1 SYQVICRDEKTQMIYQQHQSW----LRPVLR--------SNRVEYCWCNSGRA----QCH 44
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVES 734
+C C N TC + C C +GF G E+ +
Sbjct: 45 SVPVKSCSE-PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90
Score = 43.2 bits (102), Expect = 1e-05
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 620 SPLKDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKG 678
P+ N YC C C +C C N TC + C C +G
Sbjct: 23 RPVLRSNRVEYCWCNSGRAQ--CHSVPVKSCSE-PRCFNGGTCQQALYFSDFVCQCPEG 78
Score = 37.5 bits (87), Expect = 0.001
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C+ C N GTC +F C CP G G+
Sbjct: 51 CSEPRCFNGGTCQQALYF-SDFVCQCPEGFAGK 82
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 45.1 bits (107), Expect = 5e-06
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 646 NSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLNPCQNNAT 705
+ C + TC+ G +C C G +CQ E S +L+
Sbjct: 12 LPLEHPCASLCCGHGTCIDGIGS--FSCDCRSGWE--GRFCQREVSFLNCSLDNGGCTHY 67
Query: 706 CVASPGDKQITCLCLKGFEGPHRELPVESVDEPP 739
C+ G C C G++ L + P
Sbjct: 68 CLEEVGW--RRCSCAPGYKLGDDLLQCHPAVKFP 99
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVS 682
DG SF C+C + G +CQ E S +L+ C+ G C C G +
Sbjct: 29 IDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGW--RRCSCAPGYKLG 86
Query: 683 SEYCQFENSAACVTLNPCQNNATCV 707
V PC +
Sbjct: 87 D--DL-LQCHPAVK-FPCGRPWKRM 107
Score = 32.4 bits (74), Expect = 0.16
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C +GTC G F+C C SG +G+
Sbjct: 17 PCASLCCGHGTCIDGIGS---FSCDCRSGWEGR 46
Score = 31.2 bits (71), Expect = 0.38
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 3/34 (8%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQS 551
C+ C G C+C G +
Sbjct: 57 CSLDNGGCTHYCLEEVGW---RRCSCAPGYKLGD 87
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 46.6 bits (110), Expect = 3e-05
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 25/110 (22%)
Query: 631 CNCTEDFTGEYCQF-------ENSAACVTLN---PCQNNATCVASPGDKQITCLCLKG-- 678
C C + G C+ C C C+ C+C
Sbjct: 460 CRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG------QCVCHSSDF 513
Query: 679 GTVSSEYCQFEN-SAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
G ++ +YC+ ++ S C + C CLC + G +
Sbjct: 514 GKITGKYCECDDFSCVRYKGEMCSGHGQCSCG------DCLCDSDWTGYY 557
Score = 39.3 bits (91), Expect = 0.005
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 24/100 (24%)
Query: 631 CNCTEDFTGEYCQF---ENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C C D+TG YC ++ C C +C+C++ G+ + C
Sbjct: 547 CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG------SCVCIQPGS-YGDTC- 598
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
E C + C C C K G
Sbjct: 599 -EKCPTC--PDACTFKKEC----------VECKKFDRGAL 625
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 44.3 bits (104), Expect = 1e-04
Identities = 20/100 (20%), Positives = 26/100 (26%), Gaps = 22/100 (22%)
Query: 631 CNCTEDFTGEYCQFENS---AACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
C C F G CQ E + C C + C C G C
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN------VCECHSG--YQLPLC- 590
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
+ C +PC +C KG G +
Sbjct: 591 -QECPGC--PSPCGKYISCAE-------CLKFEKGPFGKN 620
Score = 42.0 bits (98), Expect = 7e-04
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 16/103 (15%)
Query: 631 CNCTEDFTGEYCQFEN-SAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFE 689
+ G+YC+ + + C + G C C G CQ E
Sbjct: 501 DVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFE--GSACQCE 554
Query: 690 NS---AACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRE 729
+ C C + C C G++ P +
Sbjct: 555 RTTEGCLNPRRVECSGRGRCRCN------VCECHSGYQLPLCQ 591
Score = 40.5 bits (94), Expect = 0.002
Identities = 23/113 (20%), Positives = 33/113 (29%), Gaps = 26/113 (23%)
Query: 631 CNCTEDFTGEYCQF--------ENSAACVTLN---PCQNNATCVASPGDKQITCLCLKGG 679
C C + G+ C+ E +C N C CV CLC
Sbjct: 448 CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG------QCLCHTSD 501
Query: 680 T----VSSEYCQFEN-SAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
+ +YC+ + + C + G C C GFEG
Sbjct: 502 VPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSA 550
Score = 34.3 bits (78), Expect = 0.19
Identities = 14/116 (12%), Positives = 32/116 (27%)
Query: 626 NLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEY 685
+++ C+ T + P A+ ++ + + G
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 686 CQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDEPPSE 741
Q C + ++ + C + C C G+ G + E + E
Sbjct: 417 VQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELE 472
Score = 30.8 bits (69), Expect = 2.0
Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 631 CNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFEN 690
+ G+ C ++ N TC + + C T + ++
Sbjct: 610 LKFEKGPFGKNCSAACPGLQLS-NNPVKGRTCKE-----RDSEGCWVAYT-----LEQQD 658
Query: 691 SAACVTLNPCQNNATCVASP 710
+ + CVA P
Sbjct: 659 GMDRYLI-YVDESRECVAGP 677
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C PC N G+C + ++ C CP G +G+
Sbjct: 6 CESNPCLNGGSCK---DDINSYECWCPFGFEGK 35
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 698 NPCQNNATCVASPGDKQITCLCLKGFEGPHREL 730
NPC N +C C C GFEG + EL
Sbjct: 9 NPCLNGGSCKDDINS--YECWCPFGFEGKNCEL 39
Score = 28.6 bits (65), Expect = 0.53
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKG 678
NPC N +C C C G
Sbjct: 9 NPCLNGGSCKDDINS--YECWCPFG 31
Score = 26.3 bits (59), Expect = 4.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQF 644
KD S+ C C F G+ C+
Sbjct: 18 KDDINSYECWCPFGFEGKNCEL 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 3e-04
Identities = 66/358 (18%), Positives = 91/358 (25%), Gaps = 127/358 (35%)
Query: 458 KFNLFKDHADDMGTCTWEKLALALAKKKTHPMFGKLAHFESQELFLSS----ALKKPGAA 513
KF + + L L L FE+ +L AL AA
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLC----------LTEFENC--YLEGNDIHAL----AA 106
Query: 514 ALGG---------------------CAGRPCRNNGT---CTPVSGGVVN----FTCTCPS 545
L A RP V G F
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------ 160
Query: 546 GGQGQSG-----L-EITPVYLWLMKLKTLV-MVQYYFRRKSTSPHKSRGQGQSGLEITPV 598
GGQG + L ++ Y L + L+ + + GL I
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLNI--- 215
Query: 599 YLWLMKMKTLVMVQYYLQQNIS-PLKDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQ 657
WL Y L IS PL G + + L
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLI-GVIQL------------AHYV--VTAKLLG--- 257
Query: 658 NNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLNPCQNNATCVASPGD----- 712
+PG+ + LKG T S+ VT A +A
Sbjct: 258 ------FTPGELRS---YLKGATGHSQ--------GLVT-------AVAIAETDSWESFF 293
Query: 713 ----KQITCLCLKGFEGPHRELPVESVDEPPSEDETSVDLQLGSQANSYNWAHMLIVT 766
K IT L G + P S+ PPS E S++ G + ML ++
Sbjct: 294 VSVRKAITVLFFIGVRC-YEAYPNTSL--PPSILEDSLENNEGVP------SPMLSIS 342
Score = 43.1 bits (101), Expect = 4e-04
Identities = 51/358 (14%), Positives = 103/358 (28%), Gaps = 147/358 (41%)
Query: 133 MSGLARYGGVSPSTILCIKVSTLSRILIYIFKIW--CKTHM---------ALSRLTPRYL 181
M G+ Y K S ++ +W H + P L
Sbjct: 1631 M-GMDLY-----------KTSKAAQ------DVWNRADNHFKDTYGFSILDIVINNPVNL 1672
Query: 182 HV-----------DTYSKISDPIFTD-RFRDRIWFLALLINLSSFFVSVP---------- 219
+ + YS + D + + F + + +S+
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 220 ---LMLISLEIFKELNGLNFRIKVFSHCRNEG-RPQSAM---H----FSPIAACLLVLVY 268
L L+ F++L +++G P A H ++ +A+ V+
Sbjct: 1733 QPALTLMEKAAFEDL-------------KSKGLIPADATFAGHSLGEYAALASLADVM-- 1777
Query: 269 CTLLPRQIEGKRFGACELAKFLVRQRGIARRDVPTWVCIATKESNRNSNARSPKNGNGSR 328
IE L + +V RG+ + P++ G
Sbjct: 1778 ------SIE-------SLVE-VVFYRGMTMQVAV------------------PRDELGRS 1805
Query: 329 DHGIFQINDKYWCTASGPAGKECHAKCSSFEDNNITDDVACVV-KIHSQTQRARGNGF-Q 386
++G+ IN P +SF + + VV ++ +T +
Sbjct: 1806 NYGMIAIN---------PG-----RVAASFSQ----EALQYVVERVGKRT-----GWLVE 1842
Query: 387 AWSTYHYCNTNSKVSTYDHADDMGEVSACACYMHV-NYLGS-SLKLE--TVLMSSEKI 440
N N + Y A G++ A +V N++ + + +S E++
Sbjct: 1843 I------VNYNVENQQYVAA---GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 39.6 bits (92), Expect = 0.004
Identities = 78/550 (14%), Positives = 144/550 (26%), Gaps = 212/550 (38%)
Query: 100 LVLICFLSCILKSSTLNSL-RSLGGGFTGFHSGQMSGLARY-----------GGVSPSTI 147
L L F +C L+ + +++L L + Y S S +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 148 LCIKVSTLSRILIY-IF--------------KIWCKT---------HMALSRLTPRYLHV 183
+ + IF ++ +T + L+
Sbjct: 146 F--RAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-QTYHVLVGDLIKFSAETLSELIRTT 202
Query: 184 DTYSKISDPIFTDRFRDRIWFLALLIN---------LSSFFVSVPLM-LISL-------- 225
++ +FT W L N L S +S PL+ +I L
Sbjct: 203 LD----AEKVFTQGLNILEW----LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 226 -------EIFKELNGLNFRIK------VFSHCRNEGRPQSAMHFSPIAA-CLLVLVYCTL 271
E+ L G + + S F + VL +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAET------DSWESFFVSVRKAITVLFFI-- 306
Query: 272 LPRQIEGKR----FGACELAKFLVRQ---------------RGIARRDVPTWVCIATKES 312
G R + L ++ + + V +V
Sbjct: 307 ------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV------- 353
Query: 313 NRNSNARSPKNG-------NGSRDHGIFQINDKYWCTASGPA----GKECH---AKCSSF 358
+N+ P NG+++ + SGP G AK S
Sbjct: 354 -NKTNSHLPAGKQVEISLVNGAKNLVV-----------SGPPQSLYGLNLTLRKAKAPSG 401
Query: 359 EDNNITDDVACVVKI-HSQTQRARGNGFQAWST-YHYCNTNSKVSTY-DHADDMGEVSAC 415
D + +I S+ + N F ++ +H S A D+ ++
Sbjct: 402 LDQS---------RIPFSERKLKFSNRFLPVASPFH--------SHLLVPASDL--INKD 442
Query: 416 ACYMHVNYLGSSLKLETVLMSSEKIFISYSSTHHISKMAN--KFKFNLFKDHADDMGT-- 471
+V++ +++ V + ++ ++ + D +
Sbjct: 443 LVKNNVSFNAKDIQI-PV--------------YDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 472 CTWEKLALALAKKKTHPM-FGKLAHFESQELFLSSALKKPGAAALGGCAGRPCRN-NGTC 529
WE K TH + FG PG A+ G RN +GT
Sbjct: 488 VKWET---TTQFKATHILDFG------------------PGGAS--GLGVLTHRNKDGTG 524
Query: 530 TPV-SGGVVN 538
V G ++
Sbjct: 525 VRVIVAGTLD 534
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 42.5 bits (99), Expect = 4e-04
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 631 CNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGT-VSSEYCQFE 689
C C + TG C P + + P C+ + + + C E
Sbjct: 315 CECEHNTTGPDC--GKCKKNYQGRPWS-PGSYLPIPKGA--ANACIPSISSIGTNVCDNE 369
Query: 690 NSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
L CQN TC + + CLC + G
Sbjct: 370 -------LLHCQNGGTCHNN-----VRCLCPAAYTGIL 395
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 42.4 bits (100), Expect = 4e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQS 551
C +PC +NG+C G +TCTC G +G +
Sbjct: 8 CISQPCLHNGSCQDSIWG---YTCTCSPGYEGSN 38
Score = 37.4 bits (87), Expect = 0.012
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLN-PCQNNATCVASPGD 712
PC +N +C TC C G C+ + CQ+ C+
Sbjct: 11 QPCLHNGSCQ--DSIWGYTCTCSPG--YEGSNCELAKNECHPERTDGCQHF--CLPGQES 64
Query: 713 KQITCLCLKGFEGPHRELPVESVDEPPS 740
TC C +G+ D+
Sbjct: 65 Y--TCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 32.8 bits (75), Expect = 0.39
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 623 KDGNLSFYCNCTEDFTGEYCQFENSAACVTLN-PCQNNATCVASPGDKQITCLCLKGGTV 681
+D + C C+ + G C+ + CQ+ C+ TC C +G +
Sbjct: 20 QDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF--CLPGQESY--TCSCAQGYRL 75
Query: 682 SSEYCQFENSAACVTLNPCQNNATCV 707
++ Q C
Sbjct: 76 GEDHKQCVPHDQCACGVLTSEKRAPD 101
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 39.3 bits (91), Expect = 4e-04
Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 649 ACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLN-PCQNNATCV 707
C+ N NA C + CL + C + C N C A C
Sbjct: 6 RCIDTN-VPENAACYRYLDGTE-EWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECK 63
Query: 708 ASPGDKQITCLCLKGFEGP 726
+I C C K P
Sbjct: 64 -MNDKNEIVCKCTKEGSEP 81
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 40.2 bits (94), Expect = 5e-04
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 628 SFYCNCTEDFTGEYCQF-ENSAACV--------TLNPCQNNATCVASPGDKQITCLCLKG 678
+ C C F+ C + C + C + G C+C G
Sbjct: 18 ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGS--YDCVCSPG 75
Query: 679 --GTVSSEYCQFENSAACV-------TLNPCQNNATCVASPGDKQITCLCLKGFEGPHRE 729
++ + E+ C + C ++ C + G +C C G++ H
Sbjct: 76 YEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGS--YSCRCRPGWKPRHGI 133
Query: 730 LPVESVDE 737
+
Sbjct: 134 PNNQKDTV 141
Score = 35.2 bits (81), Expect = 0.024
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACV--------TLNPCQNNAT 705
C +++CV + C C G + SE C + C +
Sbjct: 7 RWCPQDSSCVNATA-----CRCNPGFSSFSEIIT-TPMETCDDINECATLSKVSCGKFSD 60
Query: 706 CVASPGDKQITCLCLKGFEGPHRELPVESVDE 737
C + G C+C G+E ++ E
Sbjct: 61 CWNTEGS--YDCVCSPGYEPVSGAKTFKNESE 90
Score = 29.8 bits (67), Expect = 1.5
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 19/85 (22%)
Query: 628 SFYCNCTEDFT----GEYCQFENSAACV-------TLNPCQNNATCVASPGDKQITCLCL 676
S+ C C+ + + + E+ C + C ++ C + G +C C
Sbjct: 67 SYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGS--YSCRCR 124
Query: 677 KGGTVSSEYCQFENSAACVTLNPCQ 701
G C+
Sbjct: 125 PGWKPRHGIPN------NQKDTVCE 143
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 39.0 bits (90), Expect = 5e-04
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLNP-CQNNATCVASPGD 712
C N+ C +++ C CL + C + C N C +A C
Sbjct: 10 KQCPQNSGCFRHLDERE-ECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSG 68
Query: 713 ---KQITCLCLKGFEGP 726
K+ITC C K P
Sbjct: 69 SNGKKITCECTKPDSYP 85
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 39.6 bits (91), Expect = 0.001
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 645 ENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEY-CQFENSAACVTLN-PCQN 702
E A+ VT++ N V C+C +G SE C+ N TL C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNH--FXCMCNEGLVHLSENTCEEXNECXXETLGXACGE 58
Query: 703 NATCVASPGDKQI---TCLCLKGFEGPHRELPVESVDEPPSEDETSVDLQLGSQANSYN 758
C+ +P Q+ C C++G+ ++ + ++ S+ S
Sbjct: 59 FGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAG 117
Score = 38.1 bits (87), Expect = 0.004
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 10/111 (9%)
Query: 620 SPLKDGNLSFYCNCTEDFTG--EYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLK 677
+P + C C E +T + C + + ++ C C
Sbjct: 65 NPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQS--AGCSCAI 122
Query: 678 GGTVSSE---YCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEG 725
G + E C AC L +N C G C C++GF
Sbjct: 123 GXVPNPEDEXXCTXTGETAC-QLXCNTDNEVCXNVEGV--YXCQCMEGFTF 170
Score = 32.7 bits (73), Expect = 0.30
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 628 SFYCNCTEDFTG---EYCQFENSAACVTLN-PCQNNATCVASPGDKQI---TCLCLKGGT 680
F C C E C+ N TL C C+ +P Q+ C C++G T
Sbjct: 24 HFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYT 83
Query: 681 VSSEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRE 729
+ + C + + ++ C C G +
Sbjct: 84 LXEDTCVLDVCQYXNCGESGECIVEYLSEIQS--AGCSCAIGXVPNPED 130
Score = 30.8 bits (68), Expect = 1.3
Identities = 28/191 (14%), Positives = 42/191 (21%), Gaps = 24/191 (12%)
Query: 522 PCRNNGTCTPVSGGVVNFTCTCPSGGQGQSGLEITPVYLWLMKLKTLVMVQYYFRRKSTS 581
NG +S F C C G S + ++ +
Sbjct: 11 TICXNGQLVQMSNH---FXCMCNEGLVHLSENTCEEXNECXXETLGXACGEF---GQCIE 64
Query: 582 PHKSRGQGQSGLEITPVYLWLMKMKTLVMVQYYLQQNISP----LKDGNLSFYCNCTEDF 637
Y L + QY S C+C
Sbjct: 65 NPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGX 124
Query: 638 TGE-----YCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSA 692
C AC L +N C G C C++G T E
Sbjct: 125 VPNPEDEXXCTXTGETAC-QLXCNTDNEVCXNVEGV--YXCQCMEGFTFDXEXNV----- 176
Query: 693 ACVTLNPCQNN 703
C+ + ++
Sbjct: 177 -CLGPHHHHHH 186
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 37.2 bits (85), Expect = 0.008
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 655 PCQNNATCVASPGDKQITCLCLKGGTVSS---EYCQFENSAACVTLNPCQNNATCVASPG 711
PC VA + + + +G T+ F+ C+N C
Sbjct: 108 PCLGXQDGVA-AFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR- 165
Query: 712 DKQITCLCLKGFEGPH 727
C C GF GPH
Sbjct: 166 ----ICECPDGFHGPH 177
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 32.2 bits (74), Expect = 0.093
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 650 CVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFENSAACVTLNPCQNNATCVAS 709
C + C++ C+ + G C C G ++ C + C NPC N TC
Sbjct: 8 CKEPDVCKH-GQCINTDGS--YRCECPFGYILAGNECVDTDE--CSVGNPCGN-GTCKNV 61
Query: 710 PGDKQITCLCLKGFEG 725
G + C C +GFE
Sbjct: 62 IGGFE--CTCEEGFEP 75
Score = 27.2 bits (61), Expect = 5.0
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQSG 552
C+ NGTC V GG F CTC G +
Sbjct: 47 CSVGNPCGNGTCKNVIGG---FECTCEEGFEPGPM 78
Score = 26.8 bits (60), Expect = 8.2
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSG 546
C +G C G + C CP G
Sbjct: 8 CKEPDVCKHGQCINTDGS---YRCECPFG 33
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 33.5 bits (77), Expect = 0.099
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 22/98 (22%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQ 687
SF C C+ + T + + C+ TC + D C G C
Sbjct: 23 SFICECSSESTLDPTKTI----CIETIKG----TCWQTVID--GRCEININGATLKSQC- 71
Query: 688 FENSAACVTLNPCQNNATCVASPGDKQITCLCLKGFEG 725
C +L + + + +C KG+
Sbjct: 72 ------CSSLGAAWGSPCTLCQ-----VDPICGKGYSR 98
Score = 27.7 bits (62), Expect = 8.9
Identities = 11/34 (32%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQS 551
C PC N G C G F C C S
Sbjct: 7 CESSPCIN-GVCKNSPGS---FICECSSESTLDP 36
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 31.3 bits (71), Expect = 0.11
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 698 NPCQNNATCVASPGDKQITCLCLKGFEGPH 727
C N C+ TC C+ G+ G
Sbjct: 12 GYCLNGGVCMHIESLDSYTCNCVIGYSGDR 41
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 522 PCRNNGTCTPVSGGVVNFTCTCPSGGQGQ 550
C N G C + + ++TC C G G
Sbjct: 13 YCLNGGVCMHIE-SLDSYTCNCVIGYSGD 40
Score = 26.7 bits (59), Expect = 3.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 628 SFYCNCTEDFTGEYCQFEN 646
S+ CNC ++G+ CQ +
Sbjct: 28 SYTCNCVIGYSGDRCQTRD 46
Score = 26.3 bits (58), Expect = 6.6
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 654 NPCQNNATCVASPGDKQITCLCLKG 678
C N C+ TC C+ G
Sbjct: 12 GYCLNGGVCMHIESLDSYTCNCVIG 36
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.8 bits (79), Expect = 0.14
Identities = 22/121 (18%), Positives = 27/121 (22%), Gaps = 18/121 (14%)
Query: 615 LQQNISPLKDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCL 674
L + E F G V + + +A P D L
Sbjct: 128 LPPELRAAALKLTLASVREREPFKGWIRD-------VRVQ------SSLALPVDSGEVKL 174
Query: 675 CLKGGTVSSEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLK-GFEGPHRELPVE 733
S E C N C D Q C C + GF G E
Sbjct: 175 D-DEPPNSGGGSPCEAGEEGEG-GVCLNGGVCS--VVDDQAVCDCSRTGFRGKDCSQGKE 230
Query: 734 S 734
Sbjct: 231 E 231
Score = 34.4 bits (78), Expect = 0.17
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGG 547
G C N G C+ V C C G
Sbjct: 193 GEGGVCLNGGVCSVVDDQ---AVCDCSRTG 219
Score = 34.0 bits (77), Expect = 0.22
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQG 549
C C N G C G F+C C
Sbjct: 1020 CQEDSCSNQGVCLQQWDG---FSCDCSMTSFS 1048
Score = 33.3 bits (75), Expect = 0.41
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 698 NPCQNNATCVASPGDKQITCLC-LKGFEGPHRELPVESVDEPPSEDETSVDLQLGSQANS 756
+ C N C+ +C C + F GP P + + + + ++
Sbjct: 1023 DSCSNQGVCLQQWDG--FSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPST 1080
Query: 757 YNWAHMLIVTT 767
+ +T
Sbjct: 1081 RADRLAIGFST 1091
Score = 30.6 bits (68), Expect = 2.6
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQG 549
C PC+NNG C + C C G
Sbjct: 622 CLSNPCKNNGMCRDGWNR---YVCDCSGTGYL 650
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 33.8 bits (77), Expect = 0.19
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 491 GKLAHFESQELFLSSALKKPGAAALGGCAGRPCRNNGTCTPVSGGVVNFTCTCPSGG 547
G+L S LF + +++ C C N G C G F+C C
Sbjct: 161 GRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG---FSCDCSMTS 214
Score = 33.4 bits (76), Expect = 0.29
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 698 NPCQNNATCVASPGDKQITCLC-LKGFEGPHRELPVESVDEPPSEDETSVDLQLGSQANS 756
+ C N C+ +C C + F GP P + + + + ++
Sbjct: 191 DSCSNQGVCLQQWDG--FSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPST 248
Query: 757 YNWAHMLIVTTGS 769
+ +T
Sbjct: 249 RADRLAIGFSTVQ 261
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 33.5 bits (76), Expect = 0.29
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 517 GCAGRPCRNNGTCTPVSGGVVNFTCT-CPSGGQG 549
GC PC C+ G +++C CP G G
Sbjct: 5 GCLSNPCFPGAQCSSFPDG--SWSCGFCPVGFLG 36
Score = 32.7 bits (74), Expect = 0.59
Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 28/121 (23%)
Query: 628 SFYC-NCTEDFT--GEYCQ-----FENSAACVTLNPCQNNATCVASPGD----------- 668
S+ C C F G +C+ C CV +
Sbjct: 24 SWSCGFCPVGFLGNGTHCEDLDECALVPDIC---FSTSKVPRCVNTQPGFHCLPCPPRYR 80
Query: 669 -KQITCLCLKGGTVSSEYCQFENSAACVT-LNPCQNNATCVASPG--DKQITCLCLKGFE 724
Q + L+ + C+ EN C + C +A C+ D C C G+
Sbjct: 81 GNQPVGVGLEAAKTEKQVCEPENP--CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYA 138
Query: 725 G 725
G
Sbjct: 139 G 139
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 33.2 bits (75), Expect = 0.32
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 698 NPCQNNATCVASPGDKQITCLCLK-GFEGPHRELP 731
NPCQN C+ S G Q C C + GF G + P
Sbjct: 7 NPCQNRGECM-STGFDQYKCDCTRTGFYGENCTTP 40
Score = 28.9 bits (64), Expect = 8.0
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTC 543
C PC+N G C G + C C
Sbjct: 4 CCSNPCQNRGECMST--GFDQYKCDC 27
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 30.8 bits (70), Expect = 0.48
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 20/102 (19%)
Query: 628 SFYCNCTEDFTGEYCQFENSAACVTLN-PCQNNATCVASPGDKQITCLCLKGGTVSSEYC 686
+ TE+ + N C+ N C C + CLC G +
Sbjct: 12 DYDIPTTENLYFQGAMGTNE--CLDNNGGCSY--VCNDLKIGYE--CLCPDG------F- 58
Query: 687 QFENSAACVTLNPCQNN----ATCVASPGDKQITCLCLKGFE 724
Q C ++ CQ+ CV G + C C +GF+
Sbjct: 59 QLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK--CQCEEGFQ 98
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 31.0 bits (70), Expect = 0.52
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 676 LKGGTVSSEYCQFENSAACVTLNPCQNNATC 706
L G + +C N VT+ P +A
Sbjct: 52 LFGPGIQPHHCDLTNMDGVVTVTPRSMDAET 82
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 31.5 bits (71), Expect = 0.68
Identities = 23/113 (20%), Positives = 32/113 (28%), Gaps = 26/113 (23%)
Query: 631 CNCTEDFTGEYCQF--------ENSAACVTLN---PCQNNATCVASPGDKQITCLCLKGG 679
C C + G+ C+ E +C N C CV CLC
Sbjct: 109 CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG------QCLCHTSD 162
Query: 680 T----VSSEYCQFENSA-ACVTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
+ +YC+ + C + G C C GFEG
Sbjct: 163 VPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSA 211
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 32.3 bits (73), Expect = 0.72
Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 15/106 (14%)
Query: 631 CNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGDKQITCLCLKGGTVSSEYCQFEN 690
+ TG+ CQ +S + P ++ T P C +
Sbjct: 368 GTSSTTTTGKKCQSWSS-----MTPHRHQKTPENYPNAGLTMNYC--------RNPDADK 414
Query: 691 SAACVTLNPCQNNATC--VASPGDKQITCLCLKGFEGPHRELPVES 734
C T +P C G + P E P E
Sbjct: 415 GPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVETPSEE 460
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta
structure, transcription; 2.90A {Sulfolobus tokodaii}
Length = 199
Score = 31.2 bits (71), Expect = 0.96
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 435 MSSE-KIFISYSSTHHISKMA 454
MS + I + + I ++A
Sbjct: 1 MSCKPNILVLFYGYGSIVELA 21
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 31.3 bits (70), Expect = 1.2
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 518 CAG--RPCRNNGTCTPVSGGVVNFTCTCPSGGQG 549
CA C + C + G F C C + G
Sbjct: 8 CANNRHQCSVHAECRDYATG---FCCRCVANYTG 38
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 28.3 bits (63), Expect = 1.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 628 SFYCNCTEDFTGEYCQF 644
+ CNC + GE CQ+
Sbjct: 28 KYACNCVVGYIGERCQY 44
Score = 27.5 bits (61), Expect = 2.3
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 698 NPCQNNATCVASPGDKQITCLCLKGFEGPH 727
C ++ C+ + C C+ G+ G
Sbjct: 12 GYCLHDGVCMYIEALDKYACNCVVGYIGER 41
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 31.2 bits (70), Expect = 1.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 698 NPCQNNATCVASPGDKQITCLCLK-GFEGPHRELP 731
PCQ+ CV G + C C + G+ GP+ +P
Sbjct: 8 YPCQHQGICV-RFGLDRYQCDCTRTGYSGPNCTIP 41
Score = 29.6 bits (66), Expect = 4.0
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 518 CAGRPCRNNGTCTPVSGGVVNFTCTCPSGGQGQSGLEITPVYLWLMKLKTLV 569
C PC++ G C G+ + C C G SG T +W L+T +
Sbjct: 5 CCYYPCQHQGICVRF--GLDRYQCDCT--RTGYSGPNCTIPEIW-TWLRTTL 51
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 28.0 bits (62), Expect = 1.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 625 GNLSFYCNCTEDFTGEYCQFEN 646
+ C C F G+ C+++
Sbjct: 29 DLPVYSCECAIGFMGQRCEYKE 50
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein
structure initiative, PSI, structural genomics; 1.70A
{Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A
1zwl_A*
Length = 200
Score = 30.0 bits (68), Expect = 1.9
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 435 MSSEKIFISY-SSTHHISKMA 454
MSS I + Y S ++MA
Sbjct: 3 MSSPYILVLYYSRHGATAEMA 23
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA
binding domain, poly(A polymerase, mitochondria,
transferase; 3.10A {Homo sapiens}
Length = 464
Score = 30.6 bits (68), Expect = 2.3
Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 4/158 (2%)
Query: 113 STLNSLRSLGGGFTGFHSGQMSGLARYGGVSPSTILCIKVSTLSRILIYIFKIWCKTHMA 172
S++N+ LG F + +S + ++ +V + I KI
Sbjct: 180 SSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGEC 239
Query: 173 LSRLTPRYLHVDTYSKISDPIFTDRFRDRIWFLALLINL--SSFFVSVPLMLISLEIFKE 230
L P + V P+ RF + + S L+ I +
Sbjct: 240 LDHFGPGCVGVQKILNARCPLV--RFSHQASGFQCALTTNNRIALTSSELLYIYGALDSR 297
Query: 231 LNGLNFRIKVFSHCRNEGRPQSAMHFSPIAACLLVLVY 268
+ L F ++ ++ + + + ++V+ +
Sbjct: 298 VRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFF 335
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 27.2 bits (60), Expect = 2.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 626 NLSFYCNCTEDFTGEYCQFEN 646
+ C C F G+ C+++
Sbjct: 30 LPVYSCECAIGFMGQRCEYKE 50
Score = 27.2 bits (60), Expect = 2.7
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 517 GCAGRPCRNNGTCTPVS-GGVVNFTCTCPSGGQGQ 550
C N+ C V + ++C C G GQ
Sbjct: 10 TFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQ 44
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.4 bits (66), Expect = 3.0
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 684 EYCQFENSAAC----VTLNPCQNNATCVASPGDKQITCLCLKGFEGPHRELPVESVDE 737
E+C + A C C C+ + G+ TC C GF GP E + D+
Sbjct: 107 EHCLKKKHALCYTASCQDMSCSKQGECLETIGNY--TCSCYPGFYGPECEYVRDDDDK 162
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 26.6 bits (58), Expect = 3.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 628 SFYCNCTEDFTGEYCQF 644
S+ CNC ++G+ CQ
Sbjct: 25 SYTCNCVIGYSGDRCQT 41
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.0 bits (65), Expect = 4.0
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 686 CQFENSAAC----VTLNPCQNNATCVASPGDKQITCLCLKGFEGPH 727
C + A C T C + CV + + TC C GF G
Sbjct: 109 CSKKKLALCYTAACTNTSCSGHGECVETINN--YTCKCDPGFSGLK 152
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 26.3 bits (58), Expect = 5.0
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 630 YCNCTEDFTGEYCQF 644
C C + G C+
Sbjct: 31 ACVCHSGYVGARCEH 45
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC;
1.25A {Bacillus halodurans} PDB: 1ynq_A*
Length = 317
Score = 29.1 bits (66), Expect = 5.4
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 297 ARRDVPTWVCIATKESNRNSNARSPKNGNGSRDH 330
RR + +ATK NR + + S+ +
Sbjct: 86 GRRQ---DIILATKVGNRFEQGKEGWWWDPSKAY 116
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.4 bits (60), Expect = 7.8
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 623 KDGNLSFYCNCTEDFT--GEYCQFENSAACVTLN-PCQNNATCVASPGDKQITCLCLKGG 679
+ + + C F G C S C N C A C K++ C C K G
Sbjct: 26 RYLDGTEEWRCLLGFKEVGGKCV-PASITCEENNGGCAPEAECTMDDK-KEVECKCTKEG 83
Query: 680 TVSS---EYCQFENS 691
+ +C +
Sbjct: 84 SEPLFEGVFCSSSSG 98
>3ayq_A Lysozyme; inhibitor, hydrolase-hydrolase inhibitor CO; HET: NAG
4NN; 1.77A {Meretrix lusoria} PDB: 3ab6_A*
Length = 122
Score = 27.6 bits (61), Expect = 8.1
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 306 CIATKESNRNSNARSPKNGNGSRDHGIFQINDKYWCTASGPAG 348
CI ES + G+ S G FQI + YW P
Sbjct: 13 CICKMESGCRNVGCKMDMGSLS--CGYFQIKEAYWIDCGRPGS 53
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 28.3 bits (64), Expect = 8.7
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 168 KTHMALSRLTPRY--LHVDTYSKISDPIFTDRFRD-RIWFL-ALLINLSSFF 215
K M +RL R L +D + + + ++ F+ AL NL++FF
Sbjct: 36 KRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFF 87
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 25.6 bits (56), Expect = 9.6
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 630 YCNCTEDFTGEYCQ 643
YC C +TG C+
Sbjct: 29 YCRCEVGYTGVRCE 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.428
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,386,677
Number of extensions: 664284
Number of successful extensions: 2076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1739
Number of HSP's successfully gapped: 296
Length of query: 769
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 668
Effective length of database: 3,881,772
Effective search space: 2593023696
Effective search space used: 2593023696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.7 bits)