BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9687
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 16 NIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
++D+C G PC + G C + L ++ C C Q GYTGP CEI++++C NPC+N A C+D+
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 74 VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
+ ++ C C PGY G C + EC S+PC + G CL+ N
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 102
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
CE ++++C S PC N C D + + C C GY G HCE+N D+CA +PC + RC+D
Sbjct: 41 CEIDVNECVSNPCQNDATCLDQIGEFQCICM-PGYEGVHCEVNTDECASSPCLHNGRCLD 99
Query: 73 KVKDYLCECYPGYTGKTCADDIKE 96
K+ ++ CEC G+TG C D+
Sbjct: 100 KINEFQCECPTGFTGHLCQVDLHH 123
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 16 NIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
++D+C G PC + G C + L ++ C C Q GYTGP CEI++++C NPC+N A C+D+
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 74 VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
+ ++ C C PGY G C + EC S+PC + G CL+ N
Sbjct: 61 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 100
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 2 EVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAP 61
+ L G R CE ++++C S PC N C D + + C C GY G HCE+N D+CA
Sbjct: 29 QCLQGYTGPR-CEIDVNECVSNPCQNDATCLDQIGEFQCICM-PGYEGVHCEVNTDECAS 86
Query: 62 NPCKNGARCVDKVKDYLCECYPGYTGKTC 90
+PC + RC+DK+ ++ CEC G+TG C
Sbjct: 87 SPCLHNGRCLDKINEFQCECPTGFTGHLC 115
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 22/114 (19%)
Query: 18 DDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHC----EINIDD--------CAPNP 63
D C+ PC NGG+C L +++C C G+T P+C E+ D+ C PNP
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPD-GFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 64 CKNGARCV-------DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
C NG C D Y+C+C G+ G C +I ECE PC+ GG C +
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTD 113
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 15 TNIDDCESGPCLNGGLCK-------DLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG 67
T+ C PC NGG C+ D Y C C + G+ G HC+ NI++C PCKNG
Sbjct: 50 TSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPR-GFNGIHCQHNINECEVEPCKNG 108
Query: 68 ARCVDKVKDYLCECYPGYTGKTC 90
C D V +Y CEC + G+ C
Sbjct: 109 GICTDLVANYSCECPGEFMGRNC 131
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 8 NGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNC 42
NG+ C+ NI++CE PC NGG+C DL+ NY+C C
Sbjct: 89 NGIH-CQHNINECEVEPCKNGGICTDLVANYSCEC 122
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNP-----CKNGARCVD 72
D CE PCLNGGLCKD +N+Y C C Q G+ G +CE++ N CK GA
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWC-QVGFEGKNCELDATCNIKNGRCKQFCKTGAD--- 104
Query: 73 KVKDYLCECYPGYTGKTCADDIKECE-SNPCQYGGTCLEHSNMSLYQ 118
LC C GY A D K C+ + P G + HS +L +
Sbjct: 105 --SKVLCSCTTGY---RLAPDQKSCKPAVPFPCGRVSVSHSPTTLTR 146
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNP-----CKNGARCVD 72
D CE PCLNGGLCK +N+Y C C Q G+ G +CE++ N CK GA
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWC-QVGFEGKNCELDATCNIKNGRCKQFCKTGAD--- 104
Query: 73 KVKDYLCECYPGYTGKTCADDIKECE-SNPCQYGGTCLEHSNMSLYQ 118
LC C GY A D K C+ + P G + HS +L +
Sbjct: 105 --SKVLCSCTTGY---RLAPDQKSCKPAVPFPCGRVSVSHSPTTLTR 146
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 77 YLCECYPGYTGKTCADDIKEC-ESNPCQYGGTCLEHSNMSLYQ 118
+C C GY T AD+ K C + P G LE S+ Q
Sbjct: 102 VVCSCARGY---TLADNGKACIPTGPYPCGKQTLERRKRSVAQ 141
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 61
Query: 77 YLCECYPGYTGKTCADDIKEC-ESNPCQYGGTCLEHSNMSLYQRS 120
+C C GY T AD+ K C + P G LE S+ Q +
Sbjct: 62 VVCSCARGY---TLADNGKACIPTGPYPCGKQTLERRKRSVAQAT 103
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN-GARCVDKVKDYL 78
C S PCL+ G C+D + YTC C GY G +CE+ ++C P C+ + Y
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTC-SPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 79 CECYPGYTGKTCADDIKEC 97
C C GY +D K+C
Sbjct: 67 CSCAQGY---RLGEDHKQC 82
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKEC---ESNPCQY 104
C PC + C D + Y C C PGY G C EC ++ CQ+
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH 56
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
C S PC N G+C+D N Y C+C TGY G CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 29 GLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKDYLCECY-PGYT 86
G KD+ Q T P C C NPCKN C D Y+C+C GY
Sbjct: 593 GQSKDI--RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL 650
Query: 87 GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFN 134
G++C E E+ Y G S++ + LP + A++ +
Sbjct: 651 GRSC-----EREATVLSYDG--------SMFMKIQLPVVMHTEAEDVS 685
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHC 52
R CE C+ C N G+C + ++C+C T ++GP C
Sbjct: 1011 RGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1052
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 25 CLNGGLCKDLLNNYTCNCQQTGYTGPHC 52
CLNGG+C + + C+C +TG+ G C
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
C S PC N G+C+D N Y C+C TGY G CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 29 GLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKDYLCECY-PGYT 86
G KD+ Q T P C C NPCKN C D Y+C+C GY
Sbjct: 593 GQSKDI--RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL 650
Query: 87 GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFN 134
G++C E E+ Y G S++ + LP + A++ +
Sbjct: 651 GRSC-----EREATVLSYDG--------SMFMKIQLPVVMHTEAEDVS 685
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHC 52
R CE C+ C N G+C + ++C+C T ++GP C
Sbjct: 1020 RGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1061
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 25 CLNGGLCKDLLNNYTCNCQQTGYTGPHC 52
CLNGG+C + + C+C +TG+ G C
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
Length = 551
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 77 YLCECYPGYT----GKTC 90
+C C GYT GK C
Sbjct: 102 VVCSCARGYTLADNGKAC 119
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 1 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization,
Preclinical Pharmacokinetics, Pharmacodynamics, And
Efficacy In A Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue
Factor
Length = 152
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
D C S PC NGG CKD L +Y C C + G +CE + DD +NG C D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDDQLICVNENGG-CEQYCSDH 105
Query: 78 L-----CECYPGYT 86
C C+ GY+
Sbjct: 106 TGTKRSCRCHEGYS 119
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant
Of Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 71
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 47
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 71
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin
Endoperoxide H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 47
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 51
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
C S PC N G+C+D N Y C+C TGY G CE
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 29 GLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKDYLCECY-PGYT 86
G KD+ Q T P C C NPCKN C D Y+C+C GY
Sbjct: 368 GQSKDI--RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL 425
Query: 87 GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
G++C E E+ Y G S++ + LP + A++
Sbjct: 426 GRSC-----EREATVLSYDG--------SMFMKIQLPVVMHTEAED 458
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHC 52
R CE C+ C N G+C + ++C+C T ++GP C
Sbjct: 795 RGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 836
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr,
23 Structures
Length = 41
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
D C S PC NGG CKD L +Y C C + G +CE +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETH 40
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD 58
++ D C S PC NGG CKD L +Y C C + G +CE + DD
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDD 43
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE
TISSUE Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia ,
Souluble Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
D C S PC NGG CKD L +Y C C + G +CE + DD +NG C D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDDQLICVNENGG-CEQYCSDH 105
Query: 78 L-----CECYPGYT 86
C C+ GY+
Sbjct: 106 TGTKRSCRCHEGYS 119
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
D C S PC NGG CKD L +Y C C + G +CE + DD +NG C D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDDQLICVNENGG-CEQYCSDH 105
Query: 78 L-----CECYPGYT 86
C C+ GY+
Sbjct: 106 TGTKRSCRCHEGYS 119
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue
Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor
Viia Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation
Factor Viia With Human Soluble Tissue Factor In The
Presence Of Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
D C S PC NGG CKD L +Y C C + G +CE + DD +NG C D+
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDDQLICVNENGG-CEQYCSDH 105
Query: 78 L-----CECYPGYT 86
C C+ GY+
Sbjct: 106 TGTKRSCRCHEGYS 119
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 106
Query: 77 YLCECYPGYTGKTCADDIKEC 97
+C C GY T AD+ K C
Sbjct: 107 VVCSCARGY---TLADNGKAC 124
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
D CES PCLNGG CKD +N+Y C C G+ G +CE+
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWC-PFGFEGKNCEL 39
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
++ D C NPC NG C D + Y C C G+ GK C
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 40
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
D C S PC NGG CKD L +Y C C + G +CE + DD +NG C D+
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDDQLICVNENGG-CEQYCSDH 64
Query: 78 L-----CECYPGYT 86
C C+ GY+
Sbjct: 65 TGTKRSCRCHEGYS 78
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 34
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD 58
D C S PC NGG CKD L +Y C C + G +CE + DD
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDD 40
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
++++C NPC+N A C+D++ ++ C C PGY G C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
++++C S PC N C D + + C C GY G +CEI
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCIC-MPGYEGVYCEI 38
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 93 DIKECESNPCQYGGTCLEH 111
D+ EC SNPCQ TCL+
Sbjct: 1 DVNECISNPCQNDATCLDQ 19
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQAS 63
Query: 77 YLCECYPGYT----GKTC 90
+C C GYT GK C
Sbjct: 64 VVCSCARGYTLADNGKAC 81
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 61
Query: 77 YLCECYPGYT----GKTC 90
+C C GYT GK C
Sbjct: 62 VVCSCARGYTLADNGKAC 79
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule,
S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 63
Query: 77 YLCECYPGYT----GKTC 90
+C C GYT GK C
Sbjct: 64 VVCSCARGYTLADNGKAC 81
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 62
Query: 77 YLCECYPGYT----GKTC 90
+C C GYT GK C
Sbjct: 63 VVCSCARGYTLADNGKAC 80
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI 56
D CE PCLN G CKD + +YTC C + G+ G +CE +
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAE-GFEGKNCEFST 41
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D C +PC N C D + DY C C G+ GK C
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNC 37
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 33
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD 58
C S PC NGG CKD L +Y C C + G +CE + DD
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDD 39
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 33
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD 58
C S PC NGG CKD L +Y C C + G +CE + DD
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDD 39
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 7 QNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
QN + +C G C NGG C + C C G+ GPHCE + C P C N
Sbjct: 138 QNAIFFKTCQQAECPGG-CRNGGFCNE---RRICECPD-GFHGPHCEKAL--CTPR-CMN 189
Query: 67 GARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCL 109
G CV C C PG+ G C D C S C GGTC
Sbjct: 190 GGLCVT---PGFCICPPGFYGVNC--DKANC-STTCFNGGTCF 226
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 22 SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC 81
S C NGG C C C G G CEI+ P PC+NG +C+ K K C+C
Sbjct: 216 STTCFNGGTC---FYPGKCICP-PGLEGEQCEISK---CPQPCRNGGKCIGKSK---CKC 265
Query: 82 YPGYTGKTCADDIKECESNPCQYGGTCLE 110
GY G C+ + CE C GTC E
Sbjct: 266 SKGYQGDLCSKPV--CEPG-CGAHGTCHE 291
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
D CE+ PC N G CK L YTC C + G+ G +CE+ C+ + C ++
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 62
Query: 77 YLCECYPGYTGKTCADDIKEC 97
+C C GY T AD+ K C
Sbjct: 63 VVCSCARGY---TLADNGKAC 80
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI 56
D CE PCLN G CK + +YTC C + G+ G +CE +
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAE-GFEGKNCEFST 85
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D C +PC N C + DY C C G+ GK C
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNC 81
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI 56
D CE PCLN G CK + +YTC C + G+ G +CE +
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAE-GFEGKNCEFST 41
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D C +PC N C + DY C C G+ GK C
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNC 37
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
C+ C G C +++NNYTCNC GY GP C+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNC-DVGYYGPQCQF 155
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
C P C CV+ + +Y C C GY G C
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
C + PCL+GG C ++ + C+C GYTGP C+++
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCHC-PVGYTGPFCDVD 82
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 51 HCE-INIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD 93
HC+ + C NPC +G RC++ LC C GYTG C D
Sbjct: 39 HCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
Length = 604
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
Length = 587
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
Length = 552
Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 29.6 bits (65), Expect = 0.53, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 CESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
C S PC N G C + Y C+C +TG+ G +C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 29.6 bits (65), Expect = 0.53, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 59 CAPNPCKNGARCVDKVKD-YLCECY-PGYTGKTC 90
C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 9 GLRLCETNIDDCESG-PCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
G +LC+ +++ C + PCLNGG C + + Y C+C + GY+GP+CEI
Sbjct: 123 GGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPE-GYSGPNCEI 169
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 44 QTGYTGPHCEINIDDCAPN-PCKNGARCVDKVKD-YLCECYPGYTGKTC 90
+T + G C+ +++ C + PC NG C + D Y C C GY+G C
Sbjct: 119 ETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 23 GPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
G CLNGG+C + L++YTCNC GY+G CE
Sbjct: 12 GYCLNGGVCMHIESLDSYTCNC-VIGYSGDRCE 43
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 1 MEVLWSQNGLRLCETN-IDDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCEIN 55
+E W +G C + + C C NGG C+ L +++ C C + G+ G CEI+
Sbjct: 31 VEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPE-GFAGKSCEID 87
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 54 INIDDCAPNPCKNGARCVDKV--KDYLCECYPGYTGKTCADDIK 95
+ + C+ C NG C + D++C+C G+ GK+C D +
Sbjct: 46 VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 23 GPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
G CLNGG+C + L++YTCNC GY+G C+
Sbjct: 12 GYCLNGGVCMHIESLDSYTCNC-VIGYSGDRCQ 43
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHC 52
R CE C+ C N G+C + ++C+C T ++GP C
Sbjct: 179 RGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 220
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID 57
+ID+CES PC+N G+CK+ ++ C C P I I+
Sbjct: 3 DIDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIE 43
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, 20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, Minimized Average Structure
Length = 63
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 64 CKNGARCVDKVKD------YLCECYPGYTGKTCADDI 94
C NG C VKD YLC+C PG+TG C +++
Sbjct: 14 CVNGGECF-MVKDLSNPSRYLCKCQPGFTGARCTENV 49
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD 58
C+ C G C + + NYTC+C G+ GP CE DD
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSC-YPGFYGPECEYVRDD 159
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
C C C++ + +Y C CYPG+ G C
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 64 CKNGARCVDKVKD------YLCECYPGYTGKTCADDI 94
C NG C VKD YLC+C PG+TG C +++
Sbjct: 16 CVNGGECF-MVKDLSNPSRYLCKCQPGFTGARCTENV 51
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 25 CLNGGLCKDLLNNYTCNCQQTGYTGPHC--EINIDDCAPNPCKNGARCVDKVKDYLCECY 82
C G C D + +++C+C ++G+ G C E++ +C+ + C+++V C C
Sbjct: 15 CCGHGTCIDGIGSFSCDC-RSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCA 73
Query: 83 PGYTGKTCADDIKECE 98
PGY DD+ +C
Sbjct: 74 PGY---KLGDDLLQCH 86
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIK 95
CA C +G C+D + + C+C G+ G+ C ++
Sbjct: 11 CASLCCGHGT-CIDGIGSFSCDCRSGWEGRFCQREVS 46
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 6 SQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
S+ L LC T C + C G C + +NNYTC C G++G CE
Sbjct: 110 SKKKLALCYTAA--CTNTSCSGHGECVETINNYTCKC-DPGFSGLKCE 154
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDI 94
C C CV+ + +Y C+C PG++G C +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 6 SQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
S+ L LC T C + C G C + +NNYTC C G++G CE
Sbjct: 110 SKKKLALCYTAA--CTNTSCSGHGECVETINNYTCKC-DPGFSGLKCE 154
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDI 94
C C CV+ + +Y C+C PG++G C +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 16 NIDDCESGPCLNG-GLCKDLLNNYTCNCQQ---TGYTGPHCEINIDDCAPNP--CKNGAR 69
+ID+C P L G G C + ++ C C + +G+ ++ID+C +P C+ G
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV- 60
Query: 70 CVDKVKDYLCECYPGY 85
C + Y CEC PG+
Sbjct: 61 CHNTEGSYRCECPPGH 76
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 58 DCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
C C C++ + +Y C CYPG+ G C
Sbjct: 3 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 35
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 19 DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
C+ C G C + + NYTC+C G+ GP CE
Sbjct: 3 SCQDMSCSKQGECLETIGNYTCSC-YPGFYGPECE 36
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 28.9 bits (63), Expect = 0.97, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 79 CECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
CEC YTG C++ I+ C ++ G LE
Sbjct: 39 CECNTCYTGPDCSEKIQGCSADVASGDGLFLE 70
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 79 CECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
CEC YTG C++ I+ C ++ G LE
Sbjct: 39 CECNTCYTGPDCSEKIQGCSADVASGDGLFLE 70
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 23 GPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
G CLNGG+ + L++YTCNC GY+G C+
Sbjct: 9 GYCLNGGVXMHIESLDSYTCNC-VIGYSGDRCQ 40
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 25 CLNGGLCKDLLNNYTCNCQQTGYTGPHC--EINIDDCAPNPCKNGARCVDKVKDYLCECY 82
C G C + +++C+C+ +G+ G C E++ +C+ + C+++V C C
Sbjct: 22 CCGHGTCIXGIGSFSCDCR-SGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCA 80
Query: 83 PGYTGKTCADDIKECE 98
PGY DD+ +C
Sbjct: 81 PGY---KLGDDLLQCH 93
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 54 INIDDCA-PNPCKNGARCVDKVKDYLCECYPGY--TGKTCADDIKECESNPCQYG 105
+++D+C P+ CK+G +C++ Y CEC GY G C D + NPC G
Sbjct: 3 VDMDECKEPDVCKHG-QCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNG 56
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 22 SGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHC 52
S PC N G C + Y C+C +TG+ G +C
Sbjct: 6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1DYQ|A Chain A, Staphylococcal Enterotoxin A Mutant Vaccine
Length = 234
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 70 CVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLP 123
VDK K + Y Y G CA C YGG L H N L + +P
Sbjct: 77 IVDKYKGKKVDLYGAYAGYQCAGGT--PNKTACMYGGVTL-HDNNRLTEEKKVP 127
>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
pdb|1IUG|B Chain B, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
Length = 352
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 104 YGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
Y G L HS S +DLPAL + F ++
Sbjct: 122 YAGLLLVHSETSTGALADLPALARAFKEK 150
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 18 DDCESGPCLNGGLCKDLLN-NYTCNCQQTGY--TGPHCEINIDDCA--PNPCKNGA---R 69
D C S PC G C + +++C G+ G HCE ++D+CA P+ C + + R
Sbjct: 1 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPR 59
Query: 70 CVDKVKDYLC-ECYPGYTG 87
CV+ + C C P Y G
Sbjct: 60 CVNTQPGFHCLPCPPRYRG 78
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 23 GPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
G C NGG C + C C G+ GPHCE
Sbjct: 153 GGCRNGGFCNE---RRICECPD-GFHGPHCE 179
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 23 GPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
G C NGG C + C C G+ GPHCE
Sbjct: 153 GGCRNGGFCNE---RRICECPD-GFHGPHCE 179
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 47 YTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIK 95
Y GP CE C C++ K C C PGY+G TC K
Sbjct: 183 YIGPQCE--------EMCYGHGSCINGTK---CICDPGYSGPTCKISTK 220
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 47 YTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIK 95
Y GP CE C C++ K C C PGY+G TC K
Sbjct: 183 YIGPQCE--------EMCYGHGSCINGTK---CICDPGYSGPTCKISTK 220
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 18 DDCESGPCLNGGLCKDLLN-NYTCNCQQTGY--TGPHCEINIDDCA--PNPCKNGA---R 69
D C S PC G C + +++C G+ G HCE ++D+CA P+ C + + R
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPR 62
Query: 70 CVDKVKDYLC-ECYPGYTG 87
CV+ + C C P Y G
Sbjct: 63 CVNTQPGFHCLPCPPRYRG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,075,964
Number of Sequences: 62578
Number of extensions: 216387
Number of successful extensions: 603
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 268
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)