Query psy9687
Match_columns 141
No_of_seqs 136 out of 1756
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 17:02:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1219|consensus 99.6 1E-15 2.2E-20 122.4 8.8 104 18-122 3865-3970(4289)
2 KOG1219|consensus 99.3 2.1E-12 4.5E-17 104.3 6.6 88 3-91 3889-3977(4289)
3 KOG4289|consensus 99.3 5.3E-12 1.2E-16 98.8 5.6 102 18-120 1180-1306(2531)
4 KOG4289|consensus 99.1 2.1E-10 4.6E-15 90.3 5.9 87 4-91 1226-1316(2531)
5 KOG1214|consensus 99.0 1.8E-09 3.9E-14 81.5 8.6 118 4-124 720-857 (1289)
6 KOG1217|consensus 98.3 1.2E-05 2.6E-10 58.7 9.6 123 3-126 155-304 (487)
7 KOG1225|consensus 98.1 2.2E-05 4.7E-10 58.0 7.2 76 3-93 268-343 (525)
8 KOG1217|consensus 98.0 0.0001 2.3E-09 53.9 9.8 117 5-122 257-385 (487)
9 KOG1214|consensus 98.0 3.2E-05 6.8E-10 59.4 7.0 92 30-123 800-906 (1289)
10 PF07645 EGF_CA: Calcium-bindi 97.9 1.7E-05 3.8E-10 38.6 3.2 32 16-48 1-34 (42)
11 smart00179 EGF_CA Calcium-bind 97.9 2.9E-05 6.4E-10 36.9 4.0 35 17-52 2-38 (39)
12 PF00008 EGF: EGF-like domain 97.8 2.1E-05 4.5E-10 36.0 2.5 29 21-50 2-31 (32)
13 KOG1225|consensus 97.8 0.00018 3.8E-09 53.3 8.4 91 1-109 235-325 (525)
14 smart00179 EGF_CA Calcium-bind 97.7 7.9E-05 1.7E-09 35.4 4.0 35 56-90 2-38 (39)
15 PF00008 EGF: EGF-like domain 97.7 1.8E-05 4E-10 36.2 1.6 29 60-88 2-31 (32)
16 KOG4260|consensus 97.7 6.8E-05 1.5E-09 50.6 4.5 30 22-52 149-181 (350)
17 PF07645 EGF_CA: Calcium-bindi 97.7 2.8E-05 6E-10 37.9 2.1 32 55-86 1-34 (42)
18 cd00054 EGF_CA Calcium-binding 97.6 0.00021 4.5E-09 33.5 3.9 34 18-52 3-37 (38)
19 cd00054 EGF_CA Calcium-binding 97.4 0.00038 8.3E-09 32.5 3.9 34 57-90 3-37 (38)
20 KOG4260|consensus 97.3 0.00016 3.5E-09 48.8 1.8 76 4-86 222-304 (350)
21 smart00181 EGF Epidermal growt 96.9 0.0028 6E-08 29.2 3.7 25 23-49 6-30 (35)
22 cd00053 EGF Epidermal growth f 96.9 0.0033 7.1E-08 28.7 3.9 27 23-50 6-32 (36)
23 smart00181 EGF Epidermal growt 96.8 0.003 6.6E-08 29.0 3.6 28 62-90 6-34 (35)
24 cd00053 EGF Epidermal growth f 96.8 0.0033 7.3E-08 28.7 3.8 28 61-88 5-32 (36)
25 PF12947 EGF_3: EGF domain; I 96.5 0.0019 4.2E-08 30.2 1.5 25 63-87 7-31 (36)
26 PF12662 cEGF: Complement Clr- 96.2 0.0056 1.2E-07 25.9 2.0 10 77-86 2-11 (24)
27 KOG1226|consensus 95.9 0.06 1.3E-06 41.8 7.6 88 3-99 481-590 (783)
28 PF12947 EGF_3: EGF domain; I 95.8 0.013 2.9E-07 27.4 2.4 26 24-50 7-32 (36)
29 PF12661 hEGF: Human growth fa 95.3 0.0062 1.4E-07 21.8 0.4 10 79-88 2-11 (13)
30 KOG1226|consensus 94.5 0.3 6.6E-06 38.1 7.6 75 10-93 539-622 (783)
31 PF07974 EGF_2: EGF-like domai 93.4 0.16 3.4E-06 23.0 2.8 25 63-89 7-31 (32)
32 cd01475 vWA_Matrilin VWA_Matri 93.1 0.071 1.5E-06 35.6 2.0 37 49-86 181-217 (224)
33 PF14670 FXa_inhibition: Coagu 92.2 0.12 2.6E-06 24.1 1.5 19 68-86 10-28 (36)
34 cd01475 vWA_Matrilin VWA_Matri 92.0 0.24 5.2E-06 33.1 3.5 38 87-125 181-218 (224)
35 KOG3516|consensus 90.4 0.31 6.8E-06 39.9 3.2 41 16-56 544-584 (1306)
36 KOG3514|consensus 88.8 0.34 7.5E-06 39.4 2.3 36 19-54 625-660 (1591)
37 PF12946 EGF_MSP1_1: MSP1 EGF 86.6 0.45 9.7E-06 22.3 1.1 26 61-86 4-30 (37)
38 KOG3516|consensus 84.8 1.2 2.6E-05 36.8 3.3 38 18-55 956-993 (1306)
39 PHA03099 epidermal growth fact 83.4 1.5 3.2E-05 26.7 2.6 27 25-53 53-81 (139)
40 PHA02887 EGF-like protein; Pro 80.5 2.1 4.6E-05 25.6 2.5 25 67-91 96-122 (126)
41 KOG0994|consensus 73.5 5.5 0.00012 33.4 3.7 49 39-90 1085-1145(1758)
42 KOG3514|consensus 69.4 5 0.00011 33.3 2.7 26 96-121 625-650 (1591)
43 PF06247 Plasmod_Pvs28: Plasmo 66.7 3.4 7.4E-05 27.0 1.2 83 25-113 8-105 (197)
44 smart00051 DSL delta serrate l 66.3 11 0.00024 19.9 2.9 45 39-90 18-63 (63)
45 PF00954 S_locus_glycop: S-loc 58.5 16 0.00035 21.4 3.0 30 57-87 78-108 (110)
46 KOG0994|consensus 46.5 20 0.00044 30.4 2.6 21 69-89 1135-1156(1758)
47 PF00053 Laminin_EGF: Laminin 42.3 18 0.0004 17.6 1.3 14 78-91 19-32 (49)
48 cd00055 EGF_Lam Laminin-type e 41.0 32 0.0007 16.9 2.1 12 79-90 21-32 (50)
49 PF01414 DSL: Delta serrate li 31.4 35 0.00077 18.0 1.3 11 80-90 53-63 (63)
50 KOG1218|consensus 29.1 2E+02 0.0044 20.0 8.3 39 78-116 163-202 (316)
51 smart00180 EGF_Lam Laminin-typ 25.0 63 0.0014 15.6 1.5 13 78-90 19-31 (46)
52 KOG1836|consensus 24.8 1.9E+02 0.0041 26.2 5.0 33 59-91 777-812 (1705)
53 PF08247 ENOD40: ENOD40 protei 20.5 45 0.00097 11.3 0.3 6 1-6 1-6 (12)
No 1
>KOG1219|consensus
Probab=99.64 E-value=1e-15 Score=122.43 Aligned_cols=104 Identities=38% Similarity=0.956 Sum_probs=96.4
Q ss_pred CCCCCCCCCCCCEEeecC-CceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCC-CC
Q psy9687 18 DDCESGPCLNGGLCKDLL-NNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD-IK 95 (141)
Q Consensus 18 ~~c~~~~c~~~~~C~~~~-g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~-~~ 95 (141)
+.|..+||.+++.|..+. +.|.|.|. +.|.|++|+.++..|..+||..++.|....++|.|.|+.||+|.+|+.+ ++
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCp-sqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~ 3943 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCP-SQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGIS 3943 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCc-ccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeeccccc
Confidence 789999999999998875 56999999 5999999998999999999999999999999999999999999999988 89
Q ss_pred CCcCCCCCCCCEEeecCCCcceecCCC
Q psy9687 96 ECESNPCQYGGTCLEHSNMSLYQRSDL 122 (141)
Q Consensus 96 ~c~~~~c~~~~~C~~~~~~~~~~~~~~ 122 (141)
+|+.++|.+++.|++..+++.|.|.+.
T Consensus 3944 eCs~n~C~~gg~C~n~~gsf~CncT~g 3970 (4289)
T KOG1219|consen 3944 ECSKNVCGTGGQCINIPGSFHCNCTPG 3970 (4289)
T ss_pred ccccccccCCceeeccCCceEeccChh
Confidence 999999999999999999998888643
No 2
>KOG1219|consensus
Probab=99.34 E-value=2.1e-12 Score=104.29 Aligned_cols=88 Identities=40% Similarity=0.981 Sum_probs=82.3
Q ss_pred eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcC-CCcCcCCCCCCCCEEeeCCCCeeecC
Q psy9687 3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN-IDDCAPNPCKNGARCVDKVKDYLCEC 81 (141)
Q Consensus 3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~-~~~c~~~~c~~~~~c~~~~~~~~c~C 81 (141)
.|.++|+|..|+.++.+|..+||..++.|....+.|.|.|+. +|+|.+|+.. +++|..++|..++.|.+..|.|+|.|
T Consensus 3889 kCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~-gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~Cnc 3967 (4289)
T KOG1219|consen 3889 KCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPN-GYTGKRCEARGISECSKNVCGTGGQCINIPGSFHCNC 3967 (4289)
T ss_pred eCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCC-CccCceeecccccccccccccCCceeeccCCceEecc
Confidence 488999999999999999999999999999999999999994 9999999876 88999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy9687 82 YPGYTGKTCA 91 (141)
Q Consensus 82 ~~g~~~~~c~ 91 (141)
.+++.|..|.
T Consensus 3968 T~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3968 TPGILGRTCC 3977 (4289)
T ss_pred ChhHhcccCc
Confidence 9999887764
No 3
>KOG4289|consensus
Probab=99.28 E-value=5.3e-12 Score=98.82 Aligned_cols=102 Identities=36% Similarity=0.836 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCEEeec----------------------CCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCC
Q psy9687 18 DDCESGPCLNGGLCKDL----------------------LNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK 75 (141)
Q Consensus 18 ~~c~~~~c~~~~~C~~~----------------------~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~ 75 (141)
+.|...||.+...|+.. .+.+.|.|+ +||+|..|+..++.|-..||.+++.|....|
T Consensus 1180 niClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCP-pGFTgd~CeTeiDlCYs~pC~nng~C~srEg 1258 (2531)
T KOG4289|consen 1180 NICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCP-PGFTGDYCETEIDLCYSGPCGNNGRCRSREG 1258 (2531)
T ss_pred chhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCC-CCCCcccccchhHhhhcCCCCCCCceEEecC
Confidence 45666777776666432 246889999 5999999998899999999999999999999
Q ss_pred CeeecCCCCCCCCCCCCCCC--CCcCCCCCCCCEEeecCC-CcceecC
Q psy9687 76 DYLCECYPGYTGKTCADDIK--ECESNPCQYGGTCLEHSN-MSLYQRS 120 (141)
Q Consensus 76 ~~~c~C~~g~~~~~c~~~~~--~c~~~~c~~~~~C~~~~~-~~~~~~~ 120 (141)
+|.|.|.++|+|..|+.+.. .|.++.|.+++.|.+..+ ++.|.|.
T Consensus 1259 gYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp 1306 (2531)
T KOG4289|consen 1259 GYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCP 1306 (2531)
T ss_pred ceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCC
Confidence 99999999999999976543 588889999999998866 5556554
No 4
>KOG4289|consensus
Probab=99.08 E-value=2.1e-10 Score=90.25 Aligned_cols=87 Identities=40% Similarity=0.906 Sum_probs=75.0
Q ss_pred eccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC--CcCcCCCCCCCCEEeeC-CCCeeec
Q psy9687 4 LWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI--DDCAPNPCKNGARCVDK-VKDYLCE 80 (141)
Q Consensus 4 ~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~--~~c~~~~c~~~~~c~~~-~~~~~c~ 80 (141)
|.++|+|..|+.++|.|-..||.+++.|....|.|+|.|.+ +|+|.+|+.+. ..|.+..|.+++.|++. .+++.|.
T Consensus 1226 CPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrp-g~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~ 1304 (2531)
T KOG4289|consen 1226 CPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRP-GFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCH 1304 (2531)
T ss_pred CCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecC-CccccceeeecccCccccceecCCCEEeecCCCceecc
Confidence 78999999999999999999999999999999999999995 99999997654 35778889999999876 4668899
Q ss_pred CCCC-CCCCCCC
Q psy9687 81 CYPG-YTGKTCA 91 (141)
Q Consensus 81 C~~g-~~~~~c~ 91 (141)
|+.| |.++.|+
T Consensus 1305 Cp~ge~e~prC~ 1316 (2531)
T KOG4289|consen 1305 CPYGEFEDPRCE 1316 (2531)
T ss_pred CCCcccCCCceE
Confidence 9987 3455553
No 5
>KOG1214|consensus
Probab=99.03 E-value=1.8e-09 Score=81.49 Aligned_cols=118 Identities=27% Similarity=0.696 Sum_probs=84.0
Q ss_pred eccCCc--ccccccccCCCCCC--CCCCCCEEeecCCceeEecCCCCcc--C--CCCCc-----CCCcCcC--CCCCCCC
Q psy9687 4 LWSQNG--LRLCETNIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYT--G--PHCEI-----NIDDCAP--NPCKNGA 68 (141)
Q Consensus 4 ~~~~~~--g~~C~~~~~~c~~~--~c~~~~~C~~~~g~~~c~c~~~g~~--g--~~c~~-----~~~~c~~--~~c~~~~ 68 (141)
|..+++ |++|. +.++|... .|..+++|.+..++|.|.|. .+|. + -+|.. .++.|.. ..|...+
T Consensus 720 cs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~-~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g 797 (1289)
T KOG1214|consen 720 CSSGYQGDGRNCV-DENECATGFHRCGPNSVCINLPGSYRCECR-SGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAG 797 (1289)
T ss_pred EeeccCCCCCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEe-ecceeccCCcceEEecCCCCCCccccCccccCcCC
Confidence 445554 68886 77888754 39999999999999999987 3653 2 24421 2233432 2354444
Q ss_pred --EEeeC-CCCeeecCCCCCCCC--CCCCCCCCCcCCCCCCCCEEeecCCCcceecCCCCC
Q psy9687 69 --RCVDK-VKDYLCECYPGYTGK--TCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPA 124 (141)
Q Consensus 69 --~c~~~-~~~~~c~C~~g~~~~--~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~~ 124 (141)
.|... .+.|.|.|.+||.|+ .| .++|+|.++-|+..++|++..+++.|+|.+.+.
T Consensus 798 ~a~c~~hGgs~y~C~CLPGfsGDG~~c-~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~ 857 (1289)
T KOG1214|consen 798 QARCVHHGGSTYSCACLPGFSGDGHQC-TDVDECSPSRCHPAATCYNTPGSFSCRCQPGYY 857 (1289)
T ss_pred ceEEEecCCceEEEeecCCccCCcccc-ccccccCccccCCCceEecCCCcceeecccCcc
Confidence 34443 345899999999865 55 488999999999999999999999998875543
No 6
>KOG1217|consensus
Probab=98.26 E-value=1.2e-05 Score=58.73 Aligned_cols=123 Identities=33% Similarity=0.703 Sum_probs=88.6
Q ss_pred eeccCCcccccccccCCCC--CCCCCCCCEEeecCCceeEecCCCCccCCCCCcC-------------------CCcCcC
Q psy9687 3 VLWSQNGLRLCETNIDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN-------------------IDDCAP 61 (141)
Q Consensus 3 ~~~~~~~g~~C~~~~~~c~--~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~-------------------~~~c~~ 61 (141)
.|..+|.+..|....++|. ..+|.+.+.|.+..+.|.|.|.+ +|.++.+... ...|..
T Consensus 155 ~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~-~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~ 233 (487)
T KOG1217|consen 155 SCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPP-GYTGSTCETTGNGGTCVDSVACSCPPGARGPECEV 233 (487)
T ss_pred eeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCC-CccCCcCcCCCCCceEecceeccCCCCCCCCCccc
Confidence 4778888888875556787 34588889999999999999994 9988776432 111111
Q ss_pred --CCCCCC-CEEeeCCCCeeecCCCCCCCCC--CCCCCCCCcCCC-CCCCCEEeecCCCcceecCCCCCCh
Q psy9687 62 --NPCKNG-ARCVDKVKDYLCECYPGYTGKT--CADDIKECESNP-CQYGGTCLEHSNMSLYQRSDLPALP 126 (141)
Q Consensus 62 --~~c~~~-~~c~~~~~~~~c~C~~g~~~~~--c~~~~~~c~~~~-c~~~~~C~~~~~~~~~~~~~~~~~~ 126 (141)
..+... +.|.+..+.+.|.|+++|.+.. ...++++|.... |.++++|++..+.+.|.|...+..+
T Consensus 234 ~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~ 304 (487)
T KOG1217|consen 234 SIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGR 304 (487)
T ss_pred ccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCC
Confidence 112222 6788888889999999998765 234778888864 8999999998888888776554433
No 7
>KOG1225|consensus
Probab=98.06 E-value=2.2e-05 Score=58.01 Aligned_cols=76 Identities=33% Similarity=0.809 Sum_probs=51.0
Q ss_pred eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCC
Q psy9687 3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECY 82 (141)
Q Consensus 3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~ 82 (141)
+|.++|+|..|.+ -.|... |..++.+.+. .|.|.+ +|.|+.|. +..| +..|+.++.|. .+ .|.|.
T Consensus 268 IC~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~g----~CiC~~-g~~G~dCs--~~~c-padC~g~G~Ci--~G--~C~C~ 332 (525)
T KOG1225|consen 268 ICPPGFTGDDCDE--LVCPVD-CSGGGVCVDG----ECICNP-GYSGKDCS--IRRC-PADCSGHGKCI--DG--ECLCD 332 (525)
T ss_pred eCCCCCcCCCCCc--ccCCcc-cCCCceecCC----EeecCC-Cccccccc--cccC-CccCCCCCccc--CC--ceEeC
Confidence 4778888888852 335444 6555555543 888885 88888884 3334 45688888887 23 28888
Q ss_pred CCCCCCCCCCC
Q psy9687 83 PGYTGKTCADD 93 (141)
Q Consensus 83 ~g~~~~~c~~~ 93 (141)
+||.|..|...
T Consensus 333 ~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 333 EGYTGELCIQR 343 (525)
T ss_pred CCCcCCccccc
Confidence 99988887533
No 8
>KOG1217|consensus
Probab=97.99 E-value=0.0001 Score=53.87 Aligned_cols=117 Identities=32% Similarity=0.795 Sum_probs=83.4
Q ss_pred ccCCcccc--cccccCCCCCCC-CCCCCEEeecCCceeEecCCCCccCCCC--CcCCCcCc----CCCCCCCCEE--eeC
Q psy9687 5 WSQNGLRL--CETNIDDCESGP-CLNGGLCKDLLNNYTCNCQQTGYTGPHC--EINIDDCA----PNPCKNGARC--VDK 73 (141)
Q Consensus 5 ~~~~~g~~--C~~~~~~c~~~~-c~~~~~C~~~~g~~~c~c~~~g~~g~~c--~~~~~~c~----~~~c~~~~~c--~~~ 73 (141)
..+|.+.. ...++++|.... |.+++.|.+..+.|.|.|. ++|.+..+ ..+...|. ..+|..+..| ...
T Consensus 257 ~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~-~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~ 335 (487)
T KOG1217|consen 257 PEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCP-PGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGS 335 (487)
T ss_pred CCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCC-CCCCCCCCccccccccccccccCCcCCCCcccccCCC
Confidence 44555554 223678888764 8888999999888999999 49998887 22334553 3446666666 333
Q ss_pred CCCeeecCCCCCCCCCCCCCCCCCcCCCCCCCCEEee-cCCCcceecCCC
Q psy9687 74 VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLE-HSNMSLYQRSDL 122 (141)
Q Consensus 74 ~~~~~c~C~~g~~~~~c~~~~~~c~~~~c~~~~~C~~-~~~~~~~~~~~~ 122 (141)
.+.+.|.|..+|.+..|+...++|...++..++.|+. ..+.+.|.+...
T Consensus 336 ~~~~~C~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~ 385 (487)
T KOG1217|consen 336 FGGFRCACGPGFTGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAG 385 (487)
T ss_pred CCCCCcCCCCCCCCCccccCCccccCCccccCCEeccCCCCCeEecCCCc
Confidence 4457799999999999963335898888999999998 577777777643
No 9
>KOG1214|consensus
Probab=97.98 E-value=3.2e-05 Score=59.44 Aligned_cols=92 Identities=27% Similarity=0.756 Sum_probs=62.2
Q ss_pred EEeecCC-ceeEecCCCCccC--CCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCC--CCCCC---CCCCcCC-
Q psy9687 30 LCKDLLN-NYTCNCQQTGYTG--PHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGK--TCADD---IKECESN- 100 (141)
Q Consensus 30 ~C~~~~g-~~~c~c~~~g~~g--~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~--~c~~~---~~~c~~~- 100 (141)
+|....+ .|.|.|.+ ||.| ..|. +.++|.+..|...+.|.++.+++.|.|.+||.|+ +|..+ .+.|...
T Consensus 800 ~c~~hGgs~y~C~CLP-GfsGDG~~c~-dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GDGf~CVP~~~~~T~C~~er 877 (1289)
T KOG1214|consen 800 RCVHHGGSTYSCACLP-GFSGDGHQCT-DVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQCVPDTSSLTPCEQER 877 (1289)
T ss_pred EEEecCCceEEEeecC-CccCCccccc-cccccCccccCCCceEecCCCcceeecccCccCCCceecCCCccCCcccccc
Confidence 3544443 58999995 9985 4675 6799999999999999999999999999999754 45433 2334433
Q ss_pred ----CCCCCCEEeec--CCCcceecCCCC
Q psy9687 101 ----PCQYGGTCLEH--SNMSLYQRSDLP 123 (141)
Q Consensus 101 ----~c~~~~~C~~~--~~~~~~~~~~~~ 123 (141)
.|+..+.|... .+.+.+.+++.+
T Consensus 878 ~hpl~chg~t~~~~~~Dp~~~e~p~~~~p 906 (1289)
T KOG1214|consen 878 FHPLQCHGSTGFCWCVDPDGHEVPGTQTP 906 (1289)
T ss_pred ccceeeccccceeEeeCCCcccCCCCCCC
Confidence 26655544333 334455554433
No 10
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.91 E-value=1.7e-05 Score=38.65 Aligned_cols=32 Identities=38% Similarity=1.073 Sum_probs=22.3
Q ss_pred ccCCCCCC--CCCCCCEEeecCCceeEecCCCCcc
Q psy9687 16 NIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYT 48 (141)
Q Consensus 16 ~~~~c~~~--~c~~~~~C~~~~g~~~c~c~~~g~~ 48 (141)
|++||... .|...+.|+|+.|+|.|.|.+ ||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~-Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPP-GYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEEST-TEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCC-CcE
Confidence 45667643 376677788888888888874 775
No 11
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.91 E-value=2.9e-05 Score=36.90 Aligned_cols=35 Identities=51% Similarity=1.321 Sum_probs=22.9
Q ss_pred cCCCCC-CCCCCCCEEeecCCceeEecCCCCcc-CCCC
Q psy9687 17 IDDCES-GPCLNGGLCKDLLNNYTCNCQQTGYT-GPHC 52 (141)
Q Consensus 17 ~~~c~~-~~c~~~~~C~~~~g~~~c~c~~~g~~-g~~c 52 (141)
+++|.. .+|.+++.|.+..+.|.|.|.+ +|. |..|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~-g~~~g~~C 38 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPP-GYTDGRNC 38 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCC-CCccCCcC
Confidence 355655 5676666777777777777773 776 5554
No 12
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.84 E-value=2.1e-05 Score=36.01 Aligned_cols=29 Identities=59% Similarity=1.255 Sum_probs=19.1
Q ss_pred CCCCCCCCCEEeecC-CceeEecCCCCccCC
Q psy9687 21 ESGPCLNGGLCKDLL-NNYTCNCQQTGYTGP 50 (141)
Q Consensus 21 ~~~~c~~~~~C~~~~-g~~~c~c~~~g~~g~ 50 (141)
.+.||.++++|+... +.|.|.|.+ +|+|+
T Consensus 2 ~~~~C~n~g~C~~~~~~~y~C~C~~-G~~G~ 31 (32)
T PF00008_consen 2 SSNPCQNGGTCIDLPGGGYTCECPP-GYTGK 31 (32)
T ss_dssp TTTSSTTTEEEEEESTSEEEEEEBT-TEEST
T ss_pred CCCcCCCCeEEEeCCCCCEEeECCC-CCccC
Confidence 345677777777666 667777773 77664
No 13
>KOG1225|consensus
Probab=97.82 E-value=0.00018 Score=53.35 Aligned_cols=91 Identities=35% Similarity=0.830 Sum_probs=58.7
Q ss_pred CeeeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeec
Q psy9687 1 MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCE 80 (141)
Q Consensus 1 ~~~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~ 80 (141)
|..|..+|.|..|. ...|... |...+.|+.. .|.|. +||+|..|. ...|... |+.++.+++. .|.
T Consensus 235 ic~c~~~~~g~~c~--~~~C~~~-c~~~g~c~~G----~CIC~-~Gf~G~dC~--e~~Cp~~-cs~~g~~~~g----~Ci 299 (525)
T KOG1225|consen 235 ICECPEGYFGPLCS--TIYCPGG-CTGRGQCVEG----RCICP-PGFTGDDCD--ELVCPVD-CSGGGVCVDG----ECI 299 (525)
T ss_pred eeecCCceeCCccc--cccCCCC-CcccceEeCC----eEeCC-CCCcCCCCC--cccCCcc-cCCCceecCC----Eee
Confidence 34556666677664 1223322 4444567654 89999 499999994 3456444 7777776543 499
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCEEe
Q psy9687 81 CYPGYTGKTCADDIKECESNPCQYGGTCL 109 (141)
Q Consensus 81 C~~g~~~~~c~~~~~~c~~~~c~~~~~C~ 109 (141)
|+++|.|..|+ +..|. ..|+.++.|+
T Consensus 300 C~~g~~G~dCs--~~~cp-adC~g~G~Ci 325 (525)
T KOG1225|consen 300 CNPGYSGKDCS--IRRCP-ADCSGHGKCI 325 (525)
T ss_pred cCCCccccccc--cccCC-ccCCCCCccc
Confidence 99999998884 23343 4577777776
No 14
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.75 E-value=7.9e-05 Score=35.36 Aligned_cols=35 Identities=63% Similarity=1.480 Sum_probs=27.3
Q ss_pred CCcCcC-CCCCCCCEEeeCCCCeeecCCCCCC-CCCC
Q psy9687 56 IDDCAP-NPCKNGARCVDKVKDYLCECYPGYT-GKTC 90 (141)
Q Consensus 56 ~~~c~~-~~c~~~~~c~~~~~~~~c~C~~g~~-~~~c 90 (141)
+++|.. .+|..++.|.+..++|.|.|+++|. +..|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C 38 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence 355655 5788788999999999999999987 6554
No 15
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.74 E-value=1.8e-05 Score=36.16 Aligned_cols=29 Identities=59% Similarity=1.323 Sum_probs=23.8
Q ss_pred cCCCCCCCCEEeeCC-CCeeecCCCCCCCC
Q psy9687 60 APNPCKNGARCVDKV-KDYLCECYPGYTGK 88 (141)
Q Consensus 60 ~~~~c~~~~~c~~~~-~~~~c~C~~g~~~~ 88 (141)
...+|.+++.|+... +.|.|.|++||.|+
T Consensus 2 ~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 2 SSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 456788889998887 88999999998874
No 16
>KOG4260|consensus
Probab=97.72 E-value=6.8e-05 Score=50.59 Aligned_cols=30 Identities=43% Similarity=1.098 Sum_probs=19.7
Q ss_pred CCCCCCCCEEee---cCCceeEecCCCCccCCCC
Q psy9687 22 SGPCLNGGLCKD---LLNNYTCNCQQTGYTGPHC 52 (141)
Q Consensus 22 ~~~c~~~~~C~~---~~g~~~c~c~~~g~~g~~c 52 (141)
..||.-++.|.. ..|+-.|.|. +||.|+.|
T Consensus 149 er~C~GnG~C~GdGsR~GsGkCkC~-~GY~Gp~C 181 (350)
T KOG4260|consen 149 ERPCFGNGSCHGDGSREGSGKCKCE-TGYTGPLC 181 (350)
T ss_pred cCCcCCCCcccCCCCCCCCCccccc-CCCCCccc
Confidence 356777777752 3456678888 48877665
No 17
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.72 E-value=2.8e-05 Score=37.91 Aligned_cols=32 Identities=41% Similarity=1.063 Sum_probs=25.4
Q ss_pred CCCcCcC--CCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687 55 NIDDCAP--NPCKNGARCVDKVKDYLCECYPGYT 86 (141)
Q Consensus 55 ~~~~c~~--~~c~~~~~c~~~~~~~~c~C~~g~~ 86 (141)
++++|.. ..|...+.|+++.|+|.|.|++||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 3566753 3477788999999999999999986
No 18
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.56 E-value=0.00021 Score=33.49 Aligned_cols=34 Identities=50% Similarity=1.321 Sum_probs=21.0
Q ss_pred CCCCC-CCCCCCCEEeecCCceeEecCCCCccCCCC
Q psy9687 18 DDCES-GPCLNGGLCKDLLNNYTCNCQQTGYTGPHC 52 (141)
Q Consensus 18 ~~c~~-~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c 52 (141)
++|.. .+|.+++.|.+..+.|.|.|.+ +|.|..|
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~-g~~g~~C 37 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPP-GYTGRNC 37 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCC-CCcCCcC
Confidence 44544 4566666677666667777763 6666554
No 19
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.43 E-value=0.00038 Score=32.53 Aligned_cols=34 Identities=59% Similarity=1.451 Sum_probs=26.4
Q ss_pred CcCcC-CCCCCCCEEeeCCCCeeecCCCCCCCCCC
Q psy9687 57 DDCAP-NPCKNGARCVDKVKDYLCECYPGYTGKTC 90 (141)
Q Consensus 57 ~~c~~-~~c~~~~~c~~~~~~~~c~C~~g~~~~~c 90 (141)
++|.. .+|..++.|.+..+.|.|.|+.+|.|..|
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C 37 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence 44554 56777788998888999999999987654
No 20
>KOG4260|consensus
Probab=97.26 E-value=0.00016 Score=48.81 Aligned_cols=76 Identities=20% Similarity=0.598 Sum_probs=52.8
Q ss_pred eccCCc--ccccccccCCCCC--CCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCc---CCCCCCCCEEeeCCCC
Q psy9687 4 LWSQNG--LRLCETNIDDCES--GPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCA---PNPCKNGARCVDKVKD 76 (141)
Q Consensus 4 ~~~~~~--g~~C~~~~~~c~~--~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~---~~~c~~~~~c~~~~~~ 76 (141)
|..+|. -..|. |+++|.. .||.....|+|+.|+|.|...+ ||.+- .++|. ..--..+..|+++.+.
T Consensus 222 CkkGW~lde~gCv-DvnEC~~ep~~c~~~qfCvNteGSf~C~dk~-Gy~~g-----~d~C~~~~d~~~~kn~~c~ni~~~ 294 (350)
T KOG4260|consen 222 CKKGWKLDEEGCV-DVNECQNEPAPCKAHQFCVNTEGSFKCEDKE-GYKKG-----VDECQFCADVCASKNRPCMNIDGQ 294 (350)
T ss_pred hcccceecccccc-cHHHHhcCCCCCChhheeecCCCceEecccc-cccCC-----hHHhhhhhhhcccCCCCcccCCcc
Confidence 445564 24554 8899975 4588888999999999999984 88642 22332 1112345678899999
Q ss_pred eeecCCCCCC
Q psy9687 77 YLCECYPGYT 86 (141)
Q Consensus 77 ~~c~C~~g~~ 86 (141)
|+|+|..++.
T Consensus 295 ~r~v~f~~~~ 304 (350)
T KOG4260|consen 295 YRCVCFSGLI 304 (350)
T ss_pred EEEEecccce
Confidence 9999988763
No 21
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.88 E-value=0.0028 Score=29.16 Aligned_cols=25 Identities=56% Similarity=1.322 Sum_probs=14.8
Q ss_pred CCCCCCCEEeecCCceeEecCCCCccC
Q psy9687 23 GPCLNGGLCKDLLNNYTCNCQQTGYTG 49 (141)
Q Consensus 23 ~~c~~~~~C~~~~g~~~c~c~~~g~~g 49 (141)
.+|.++ .|.+..+.|.|.|.+ ||.+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~-g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPP-GYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCC-CCcc
Confidence 345555 666666666666663 6655
No 22
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.85 E-value=0.0033 Score=28.73 Aligned_cols=27 Identities=48% Similarity=1.154 Sum_probs=16.5
Q ss_pred CCCCCCCEEeecCCceeEecCCCCccCC
Q psy9687 23 GPCLNGGLCKDLLNNYTCNCQQTGYTGP 50 (141)
Q Consensus 23 ~~c~~~~~C~~~~g~~~c~c~~~g~~g~ 50 (141)
.+|.+++.|.+..+.|.|.|.. +|.+.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~-g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPP-GYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCC-CCccc
Confidence 4455556666666666676663 66554
No 23
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.84 E-value=0.003 Score=29.03 Aligned_cols=28 Identities=54% Similarity=1.385 Sum_probs=22.3
Q ss_pred CCCCCCCEEeeCCCCeeecCCCCCCC-CCC
Q psy9687 62 NPCKNGARCVDKVKDYLCECYPGYTG-KTC 90 (141)
Q Consensus 62 ~~c~~~~~c~~~~~~~~c~C~~g~~~-~~c 90 (141)
.+|..+ .|.+..+.|.|.|++||.+ ..|
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence 457666 8888888999999999987 443
No 24
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.82 E-value=0.0033 Score=28.70 Aligned_cols=28 Identities=54% Similarity=1.238 Sum_probs=22.8
Q ss_pred CCCCCCCCEEeeCCCCeeecCCCCCCCC
Q psy9687 61 PNPCKNGARCVDKVKDYLCECYPGYTGK 88 (141)
Q Consensus 61 ~~~c~~~~~c~~~~~~~~c~C~~g~~~~ 88 (141)
..+|..++.|.+..+.|.|.|+.+|.+.
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 3457677889888888999999999876
No 25
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.46 E-value=0.0019 Score=30.23 Aligned_cols=25 Identities=40% Similarity=1.038 Sum_probs=14.8
Q ss_pred CCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687 63 PCKNGARCVDKVKDYLCECYPGYTG 87 (141)
Q Consensus 63 ~c~~~~~c~~~~~~~~c~C~~g~~~ 87 (141)
.|+.++.|.++.+.|.|.|.+||.|
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCcEeecCCCCEEeECCCCCcc
Confidence 3566667777766777777777655
No 26
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.21 E-value=0.0056 Score=25.89 Aligned_cols=10 Identities=60% Similarity=1.617 Sum_probs=5.5
Q ss_pred eeecCCCCCC
Q psy9687 77 YLCECYPGYT 86 (141)
Q Consensus 77 ~~c~C~~g~~ 86 (141)
|.|.|++||.
T Consensus 2 y~C~C~~Gy~ 11 (24)
T PF12662_consen 2 YTCSCPPGYQ 11 (24)
T ss_pred EEeeCCCCCc
Confidence 4555555553
No 27
>KOG1226|consensus
Probab=95.92 E-value=0.06 Score=41.77 Aligned_cols=88 Identities=30% Similarity=0.582 Sum_probs=49.3
Q ss_pred eeccCCcccccccccCC---------CCC---C-CCCCCCEEeecCCceeEecCCCCc----cCCCCCcCCCcCc---CC
Q psy9687 3 VLWSQNGLRLCETNIDD---------CES---G-PCLNGGLCKDLLNNYTCNCQQTGY----TGPHCEINIDDCA---PN 62 (141)
Q Consensus 3 ~~~~~~~g~~C~~~~~~---------c~~---~-~c~~~~~C~~~~g~~~c~c~~~g~----~g~~c~~~~~~c~---~~ 62 (141)
.|..+|.|+.|+=..+. |.. . +|...+.|.=. .|.|.+ .. .|+.|+-+...|. ..
T Consensus 481 ~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~-~~~~~i~G~fCECDnfsC~r~~g~ 555 (783)
T KOG1226|consen 481 RCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHK-PDNGKIYGKFCECDNFSCERHKGV 555 (783)
T ss_pred ecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecC-CCCCceeeeeeeccCcccccccCc
Confidence 37789999999622211 211 1 24444444322 566663 33 3777764444443 23
Q ss_pred CCCCCCEEeeCCCCeeecCCCCCCCCCCC--CCCCCCcC
Q psy9687 63 PCKNGARCVDKVKDYLCECYPGYTGKTCA--DDIKECES 99 (141)
Q Consensus 63 ~c~~~~~c~~~~~~~~c~C~~g~~~~~c~--~~~~~c~~ 99 (141)
.|..++.|.=. .|+|.+||+|..|. .+.+.|..
T Consensus 556 lC~g~G~C~CG----~CvC~~GwtG~~C~C~~std~C~~ 590 (783)
T KOG1226|consen 556 LCGGHGRCECG----RCVCNPGWTGSACNCPLSTDTCES 590 (783)
T ss_pred ccCCCCeEeCC----cEEcCCCCccCCCCCCCCCccccC
Confidence 47777777432 38999999988764 23444543
No 28
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.75 E-value=0.013 Score=27.37 Aligned_cols=26 Identities=35% Similarity=0.915 Sum_probs=19.6
Q ss_pred CCCCCCEEeecCCceeEecCCCCccCC
Q psy9687 24 PCLNGGLCKDLLNNYTCNCQQTGYTGP 50 (141)
Q Consensus 24 ~c~~~~~C~~~~g~~~c~c~~~g~~g~ 50 (141)
.|..++.|.++.+++.|.|.+ ||.|.
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~-Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKP-GYEGD 32 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-C-EEECC
T ss_pred CCCCCcEeecCCCCEEeECCC-CCccC
Confidence 477889999999999999994 99864
No 29
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.32 E-value=0.0062 Score=21.80 Aligned_cols=10 Identities=60% Similarity=1.610 Sum_probs=4.1
Q ss_pred ecCCCCCCCC
Q psy9687 79 CECYPGYTGK 88 (141)
Q Consensus 79 c~C~~g~~~~ 88 (141)
|.|++||.|.
T Consensus 2 C~C~~G~~G~ 11 (13)
T PF12661_consen 2 CQCPPGWTGP 11 (13)
T ss_dssp EEE-TTEETT
T ss_pred ccCcCCCcCC
Confidence 4444444443
No 30
>KOG1226|consensus
Probab=94.51 E-value=0.3 Score=38.14 Aligned_cols=75 Identities=29% Similarity=0.721 Sum_probs=44.2
Q ss_pred ccccccccCCCCCC---CCCCCCEEeecCCceeEecCCCCccCCCCCc--CCCcCcC---CCCCCCCEEeeCCCCeeecC
Q psy9687 10 LRLCETNIDDCESG---PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI--NIDDCAP---NPCKNGARCVDKVKDYLCEC 81 (141)
Q Consensus 10 g~~C~~~~~~c~~~---~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~--~~~~c~~---~~c~~~~~c~~~~~~~~c~C 81 (141)
|+.|+-|--.|..+ .|..++.|.-. .|.|. +||+|+.|.- +.+.|.. ..|...+.|.=. .|.|
T Consensus 539 G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~-~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C 609 (783)
T KOG1226|consen 539 GKFCECDNFSCERHKGVLCGGHGRCECG----RCVCN-PGWTGSACNCPLSTDTCESSDGQICSGRGTCECG----RCKC 609 (783)
T ss_pred eeeeeccCcccccccCcccCCCCeEeCC----cEEcC-CCCccCCCCCCCCCccccCCCCceeCCCceeeCC----ceEc
Confidence 78886443334332 26666666543 78898 5999998753 3345542 225555555322 2667
Q ss_pred CCC-CCCCCCCCC
Q psy9687 82 YPG-YTGKTCADD 93 (141)
Q Consensus 82 ~~g-~~~~~c~~~ 93 (141)
... |.|..|+..
T Consensus 610 ~~~~~sG~~CE~c 622 (783)
T KOG1226|consen 610 TDPPYSGEFCEKC 622 (783)
T ss_pred CCCCcCcchhhcC
Confidence 665 888887543
No 31
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=93.40 E-value=0.16 Score=23.05 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=14.6
Q ss_pred CCCCCCEEeeCCCCeeecCCCCCCCCC
Q psy9687 63 PCKNGARCVDKVKDYLCECYPGYTGKT 89 (141)
Q Consensus 63 ~c~~~~~c~~~~~~~~c~C~~g~~~~~ 89 (141)
.|..++.|+.. ...|.|.++|.|+.
T Consensus 7 ~C~~~G~C~~~--~g~C~C~~g~~G~~ 31 (32)
T PF07974_consen 7 ICSGHGTCVSP--CGRCVCDSGYTGPD 31 (32)
T ss_pred ccCCCCEEeCC--CCEEECCCCCcCCC
Confidence 35566666543 22477777776654
No 32
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=93.07 E-value=0.071 Score=35.59 Aligned_cols=37 Identities=32% Similarity=0.657 Sum_probs=18.2
Q ss_pred CCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687 49 GPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYT 86 (141)
Q Consensus 49 g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~ 86 (141)
+..|. +.++|...+......|.++.|.|.|.|+.||.
T Consensus 181 ~~~C~-~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~ 217 (224)
T cd01475 181 GKICV-VPDLCATLSHVCQQVCISTPGSYLCACTEGYA 217 (224)
T ss_pred cccCc-CchhhcCCCCCccceEEcCCCCEEeECCCCcc
Confidence 44443 44444322222223566666666666666664
No 33
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=92.16 E-value=0.12 Score=24.14 Aligned_cols=19 Identities=42% Similarity=1.041 Sum_probs=15.4
Q ss_pred CEEeeCCCCeeecCCCCCC
Q psy9687 68 ARCVDKVKDYLCECYPGYT 86 (141)
Q Consensus 68 ~~c~~~~~~~~c~C~~g~~ 86 (141)
..|++..++|.|.|++||.
T Consensus 10 h~C~~~~g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 10 HICVNTPGSYRCSCPPGYK 28 (36)
T ss_dssp SEEEEETTSEEEE-STTEE
T ss_pred CCCccCCCceEeECCCCCE
Confidence 4788888999999999985
No 34
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=91.99 E-value=0.24 Score=33.08 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCcCCCCCCCCEEeecCCCcceecCCCCCC
Q psy9687 87 GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPAL 125 (141)
Q Consensus 87 ~~~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~~~ 125 (141)
+..|. +.++|...+......|.+..++|.|.|+..+..
T Consensus 181 ~~~C~-~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 181 GKICV-VPDLCATLSHVCQQVCISTPGSYLCACTEGYAL 218 (224)
T ss_pred cccCc-CchhhcCCCCCccceEEcCCCCEEeECCCCccC
Confidence 34453 666776544334468999999999988866543
No 35
>KOG3516|consensus
Probab=90.41 E-value=0.31 Score=39.89 Aligned_cols=41 Identities=39% Similarity=1.005 Sum_probs=34.8
Q ss_pred ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC
Q psy9687 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI 56 (141)
Q Consensus 16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~ 56 (141)
-.+.|.+++|.+++.|..+...|.|.|...||.|.+|.+.+
T Consensus 544 i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi 584 (1306)
T KOG3516|consen 544 ISDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSI 584 (1306)
T ss_pred cccccCCccccCCCcccccccceeEeccccccccccccCCC
Confidence 35778899999999999988899999986699999986544
No 36
>KOG3514|consensus
Probab=88.79 E-value=0.34 Score=39.45 Aligned_cols=36 Identities=47% Similarity=1.116 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCc
Q psy9687 19 DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54 (141)
Q Consensus 19 ~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~ 54 (141)
.|.++||.+++.|......|.|.|...+|.|+.|+.
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~Cer 660 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCER 660 (1591)
T ss_pred ccCCCcccCCCCccccccccccccccCcccCccccc
Confidence 688999999999999999999999867899999974
No 37
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=86.62 E-value=0.45 Score=22.30 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=15.7
Q ss_pred CCCCCCCCEEeeCC-CCeeecCCCCCC
Q psy9687 61 PNPCKNGARCVDKV-KDYLCECYPGYT 86 (141)
Q Consensus 61 ~~~c~~~~~c~~~~-~~~~c~C~~g~~ 86 (141)
...|..++.|.... |...|+|..||.
T Consensus 4 ~~~cP~NA~C~~~~dG~eecrCllgyk 30 (37)
T PF12946_consen 4 DTKCPANAGCFRYDDGSEECRCLLGYK 30 (37)
T ss_dssp SS---TTEEEEEETTSEEEEEE-TTEE
T ss_pred CccCCCCcccEEcCCCCEEEEeeCCcc
Confidence 34466677787766 677788888875
No 38
>KOG3516|consensus
Probab=84.80 E-value=1.2 Score=36.82 Aligned_cols=38 Identities=47% Similarity=1.175 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcC
Q psy9687 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55 (141)
Q Consensus 18 ~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~ 55 (141)
.-|.+.+|.+++.|......|+|.|....|.|..|..+
T Consensus 956 GhCss~~C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~e 993 (1306)
T KOG3516|consen 956 GHCSSYPCLNGGHCVERYDGYTCDCSRTAYDGPFCSKE 993 (1306)
T ss_pred cccccccccCCCEEEEecCceeeccccCcCCCCccccc
Confidence 44788899999999999999999998667889988644
No 39
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=83.37 E-value=1.5 Score=26.68 Aligned_cols=27 Identities=41% Similarity=1.117 Sum_probs=16.9
Q ss_pred CCCCCEEeec--CCceeEecCCCCccCCCCC
Q psy9687 25 CLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53 (141)
Q Consensus 25 c~~~~~C~~~--~g~~~c~c~~~g~~g~~c~ 53 (141)
|.++ .|.-. ...+.|.|.. ||.|..|+
T Consensus 53 ClHG-~C~yI~dl~~~~CrC~~-GYtGeRCE 81 (139)
T PHA03099 53 CLHG-DCIHARDIDGMYCRCSH-GYTGIRCQ 81 (139)
T ss_pred eECC-EEEeeccCCCceeECCC-Cccccccc
Confidence 5554 56433 2456777774 78777775
No 40
>PHA02887 EGF-like protein; Provisional
Probab=80.45 E-value=2.1 Score=25.58 Aligned_cols=25 Identities=32% Similarity=0.969 Sum_probs=18.9
Q ss_pred CCEEee--CCCCeeecCCCCCCCCCCC
Q psy9687 67 GARCVD--KVKDYLCECYPGYTGKTCA 91 (141)
Q Consensus 67 ~~~c~~--~~~~~~c~C~~g~~~~~c~ 91 (141)
++.|.- ......|.|..||.|.+|+
T Consensus 96 HG~C~yI~dL~epsCrC~~GYtG~RCE 122 (126)
T PHA02887 96 NGECMNIIDLDEKFCICNKGYTGIRCD 122 (126)
T ss_pred CCEEEccccCCCceeECCCCcccCCCC
Confidence 457743 3455779999999999985
No 41
>KOG0994|consensus
Probab=73.49 E-value=5.5 Score=33.43 Aligned_cols=49 Identities=29% Similarity=0.844 Sum_probs=25.4
Q ss_pred eEecCCCCccCCCCCcCCC--------cCcCCCCCCC----CEEeeCCCCeeecCCCCCCCCCC
Q psy9687 39 TCNCQQTGYTGPHCEINID--------DCAPNPCKNG----ARCVDKVKDYLCECYPGYTGKTC 90 (141)
Q Consensus 39 ~c~c~~~g~~g~~c~~~~~--------~c~~~~c~~~----~~c~~~~~~~~c~C~~g~~~~~c 90 (141)
.|.|.+ ||-|+.|..-.. .|..=.|... -.|....| +|+|.+|..|.+|
T Consensus 1085 QCqCkp-GfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQCdr~tG--~C~C~~Gv~G~rC 1145 (1758)
T KOG0994|consen 1085 QCQCKP-GFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQCDRATG--RCVCRPGVGGPRC 1145 (1758)
T ss_pred ceeccC-CCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCCccccCC--ceeecCCCCCcch
Confidence 588884 898887731001 1211112111 12433333 3788888877776
No 42
>KOG3514|consensus
Probab=69.37 E-value=5 Score=33.30 Aligned_cols=26 Identities=50% Similarity=0.807 Sum_probs=22.8
Q ss_pred CCcCCCCCCCCEEeecCCCcceecCC
Q psy9687 96 ECESNPCQYGGTCLEHSNMSLYQRSD 121 (141)
Q Consensus 96 ~c~~~~c~~~~~C~~~~~~~~~~~~~ 121 (141)
.|..+||.++++|..--++++|.|..
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs~ 650 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCSG 650 (1591)
T ss_pred ccCCCcccCCCCcccccccccccccc
Confidence 68888999999999888899999863
No 43
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=66.69 E-value=3.4 Score=26.97 Aligned_cols=83 Identities=29% Similarity=0.904 Sum_probs=45.5
Q ss_pred CCCCCEEeecCCceeEecCCCCcc---CCCCCcCCCcCc-----CCCCCCCCEEeeCC-----CCeeecCCCCCCC--CC
Q psy9687 25 CLNGGLCKDLLNNYTCNCQQTGYT---GPHCEINIDDCA-----PNPCKNGARCVDKV-----KDYLCECYPGYTG--KT 89 (141)
Q Consensus 25 c~~~~~C~~~~g~~~c~c~~~g~~---g~~c~~~~~~c~-----~~~c~~~~~c~~~~-----~~~~c~C~~g~~~--~~ 89 (141)
|.+ +........|.|.|.+ ||. -.+|+ ...+|. ..+|...+.|.... ..|.|.|.+||.. ..
T Consensus 8 CKN-G~LiQMSNHfEC~Cne-gfvl~~EntCE-~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~v 84 (197)
T PF06247_consen 8 CKN-GYLIQMSNHFECKCNE-GFVLKNENTCE-EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGV 84 (197)
T ss_dssp -BT-EEEEEESSEEEEEEST-TEEEEETTEEE-E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSS
T ss_pred ccC-CEEEEccCceEEEcCC-CcEEccccccc-cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCe
Confidence 544 3556667789999995 885 33453 233332 45677778887654 4689999999953 22
Q ss_pred CCCCCCCCcCCCCCCCCEEeecCC
Q psy9687 90 CADDIKECESNPCQYGGTCLEHSN 113 (141)
Q Consensus 90 c~~~~~~c~~~~c~~~~~C~~~~~ 113 (141)
|. ...|....|. .+.|+....
T Consensus 85 Cv--p~~C~~~~Cg-~GKCI~d~~ 105 (197)
T PF06247_consen 85 CV--PNKCNNKDCG-SGKCILDPD 105 (197)
T ss_dssp EE--EGGGSS---T-TEEEEEEEG
T ss_pred Ec--hhhcCceecC-CCeEEecCC
Confidence 31 2334444455 566665433
No 44
>smart00051 DSL delta serrate ligand.
Probab=66.32 E-value=11 Score=19.88 Aligned_cols=45 Identities=24% Similarity=0.645 Sum_probs=25.6
Q ss_pred eEecCCCCccCCCCCcCCCcCcC-CCCCCCCEEeeCCCCeeecCCCCCCCCCC
Q psy9687 39 TCNCQQTGYTGPHCEINIDDCAP-NPCKNGARCVDKVKDYLCECYPGYTGKTC 90 (141)
Q Consensus 39 ~c~c~~~g~~g~~c~~~~~~c~~-~~c~~~~~c~~~~~~~~c~C~~g~~~~~c 90 (141)
.-.|.+ .+.|..|.. .|.. .....+..|.. .|. ++|.+||.|+.|
T Consensus 18 rv~C~~-~~yG~~C~~---~C~~~~d~~~~~~Cd~-~G~--~~C~~Gw~G~~C 63 (63)
T smart00051 18 RVTCDE-NYYGEGCNK---FCRPRDDFFGHYTCDE-NGN--KGCLEGWMGPYC 63 (63)
T ss_pred EeeCCC-CCcCCccCC---EeCcCccccCCccCCc-CCC--EecCCCCcCCCC
Confidence 345663 777777752 2332 12344455643 455 678888888764
No 45
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=58.47 E-value=16 Score=21.36 Aligned_cols=30 Identities=27% Similarity=0.731 Sum_probs=19.4
Q ss_pred CcCc-CCCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687 57 DDCA-PNPCKNGARCVDKVKDYLCECYPGYTG 87 (141)
Q Consensus 57 ~~c~-~~~c~~~~~c~~~~~~~~c~C~~g~~~ 87 (141)
+.|. ...|+..+.|... ....|.|.+||..
T Consensus 78 d~Cd~y~~CG~~g~C~~~-~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNSN-NSPKCSCLPGFEP 108 (110)
T ss_pred cCCCCccccCCccEeCCC-CCCceECCCCcCC
Confidence 3454 4568888888433 3445889988853
No 46
>KOG0994|consensus
Probab=46.53 E-value=20 Score=30.42 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=15.0
Q ss_pred EEeeCCCCeee-cCCCCCCCCC
Q psy9687 69 RCVDKVKDYLC-ECYPGYTGKT 89 (141)
Q Consensus 69 ~c~~~~~~~~c-~C~~g~~~~~ 89 (141)
.|....++++| .|..||.|.+
T Consensus 1135 ~C~~Gv~G~rCdqCaRgy~G~f 1156 (1758)
T KOG0994|consen 1135 VCRPGVGGPRCDQCARGYSGQF 1156 (1758)
T ss_pred eecCCCCCcchhhhhhhhcCCC
Confidence 45566677888 5888998753
No 47
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=42.27 E-value=18 Score=17.63 Aligned_cols=14 Identities=50% Similarity=1.170 Sum_probs=11.0
Q ss_pred eecCCCCCCCCCCC
Q psy9687 78 LCECYPGYTGKTCA 91 (141)
Q Consensus 78 ~c~C~~g~~~~~c~ 91 (141)
.|.|+++|.|+.|+
T Consensus 19 ~C~C~~~~~G~~C~ 32 (49)
T PF00053_consen 19 QCVCKPGTTGPRCD 32 (49)
T ss_dssp EESBSTTEESTTS-
T ss_pred EEeccccccCCcCc
Confidence 58899999988873
No 48
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=40.99 E-value=32 Score=16.91 Aligned_cols=12 Identities=58% Similarity=1.489 Sum_probs=10.1
Q ss_pred ecCCCCCCCCCC
Q psy9687 79 CECYPGYTGKTC 90 (141)
Q Consensus 79 c~C~~g~~~~~c 90 (141)
|.|++++.|..|
T Consensus 21 C~C~~~~~G~~C 32 (50)
T cd00055 21 CECKPNTTGRRC 32 (50)
T ss_pred EeCCCcCCCCCC
Confidence 788899888777
No 49
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=31.40 E-value=35 Score=17.98 Aligned_cols=11 Identities=55% Similarity=1.464 Sum_probs=6.7
Q ss_pred cCCCCCCCCCC
Q psy9687 80 ECYPGYTGKTC 90 (141)
Q Consensus 80 ~C~~g~~~~~c 90 (141)
+|.+||.|+.|
T Consensus 53 ~C~~Gw~G~~C 63 (63)
T PF01414_consen 53 VCLPGWTGPNC 63 (63)
T ss_dssp EE-TTEESTTS
T ss_pred CCCCCCcCCCC
Confidence 56777777654
No 50
>KOG1218|consensus
Probab=29.10 E-value=2e+02 Score=19.98 Aligned_cols=39 Identities=28% Similarity=0.890 Sum_probs=23.7
Q ss_pred eecCCCCCCCCCCCCCCCCCcC-CCCCCCCEEeecCCCcc
Q psy9687 78 LCECYPGYTGKTCADDIKECES-NPCQYGGTCLEHSNMSL 116 (141)
Q Consensus 78 ~c~C~~g~~~~~c~~~~~~c~~-~~c~~~~~C~~~~~~~~ 116 (141)
.|.|.+||.+..+......|.. ..+.+++.|+...+...
T Consensus 163 ~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~~~~~~ 202 (316)
T KOG1218|consen 163 ICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRSTGSCL 202 (316)
T ss_pred ceeccCCcccccccccCCCcCCCcccCCCCeeeccccccc
Confidence 3778999988776544333443 24666677776555433
No 51
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=25.02 E-value=63 Score=15.57 Aligned_cols=13 Identities=54% Similarity=1.354 Sum_probs=10.1
Q ss_pred eecCCCCCCCCCC
Q psy9687 78 LCECYPGYTGKTC 90 (141)
Q Consensus 78 ~c~C~~g~~~~~c 90 (141)
.|.|++++.|+.|
T Consensus 19 ~C~C~~~~~G~~C 31 (46)
T smart00180 19 QCECKPNVTGRRC 31 (46)
T ss_pred EEECCCCCCCCCC
Confidence 3788888888776
No 52
>KOG1836|consensus
Probab=24.79 E-value=1.9e+02 Score=26.24 Aligned_cols=33 Identities=45% Similarity=1.170 Sum_probs=22.5
Q ss_pred CcCCCCCCCCEEeeCC--CCeeec-CCCCCCCCCCC
Q psy9687 59 CAPNPCKNGARCVDKV--KDYLCE-CYPGYTGKTCA 91 (141)
Q Consensus 59 c~~~~c~~~~~c~~~~--~~~~c~-C~~g~~~~~c~ 91 (141)
|..-+|..+..|.... ....|. |+++|+|++|+
T Consensus 777 C~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe 812 (1705)
T KOG1836|consen 777 CQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCE 812 (1705)
T ss_pred CccCCCCCChhhcCcCcccceecCCCCCCCcccccc
Confidence 6555666666665443 335587 99999998885
No 53
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=20.50 E-value=45 Score=11.28 Aligned_cols=6 Identities=50% Similarity=1.254 Sum_probs=2.5
Q ss_pred Ceeecc
Q psy9687 1 MEVLWS 6 (141)
Q Consensus 1 ~~~~~~ 6 (141)
||+||.
T Consensus 1 m~l~wq 6 (12)
T PF08247_consen 1 MELCWQ 6 (12)
T ss_pred CceeEe
Confidence 344443
Done!