RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9687
(141 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 120 bits (304), Expect = 2e-36
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 16 NIDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
++D+C + PC + G C + L ++ C C Q GYTGP CEI++++C NPC+N A C+D+
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 74 VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
+ ++ C C PGY G C + EC S+PC + G CL+ N
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 102
Score = 120 bits (303), Expect = 3e-36
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
CE ++++C S PC N C D + + C C GY G HCE+N D+CA +PC + RC+D
Sbjct: 41 CEIDVNECVSNPCQNDATCLDQIGEFQCICM-PGYEGVHCEVNTDECASSPCLHNGRCLD 99
Query: 73 KVKDYLCECYPGYTGKTCADDIKECESNPC 102
K+ ++ CEC G+TG C D+
Sbjct: 100 KINEFQCECPTGFTGHLCQVDLHHILDAQK 129
Score = 76.1 bits (188), Expect = 7e-19
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG 67
CE N D+C S PCL+ G C D +N + C C TG+TG C++++
Sbjct: 77 VHCEVNTDECASSPCLHNGRCLDKINEFQCEC-PTGFTGHLCQVDLHHILDAQKMVW 132
Score = 28.7 bits (65), Expect = 0.32
Identities = 2/19 (10%), Positives = 6/19 (31%)
Query: 11 RLCETNIDDCESGPCLNGG 29
LC+ ++ +
Sbjct: 115 HLCQVDLHHILDAQKMVWN 133
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 115 bits (289), Expect = 5e-34
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
+ D CE PCLNGGLCKD +N+Y C CQ G+ G +CE++ N
Sbjct: 44 QYVDGDQCEPNPCLNGGLCKDDINSYECWCQ-VGFEGKNCELDATCNIKNGRCKQFCKTG 102
Query: 73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMS 115
LC C GY K PC + ++
Sbjct: 103 ADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLT 145
Score = 78.9 bits (195), Expect = 8e-20
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 31 CKDLLNNYTCNCQ-----QTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGY 85
C + ++ + + ++ D C PNPC NG C D + Y C C G+
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGF 77
Query: 86 TGKTCADDIKECESNPCQYGGTCLEHSN 113
GK C D N +
Sbjct: 78 EGKNCELDATCNIKNGRCKQFCKTGADS 105
Score = 67.8 bits (166), Expect = 1e-15
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
+ CE + + C+C TGY + + P PC +
Sbjct: 80 KNCELDATCNIKNGRCKQFCKTGADSKVLCSC-TTGYRLAPDQKSCKPAVPFPCGRVSVS 138
Query: 71 VDKVK 75
Sbjct: 139 HSPTT 143
Score = 30.8 bits (70), Expect = 0.068
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 10 LRLCETNIDDCESGPCLNGGLCKD 33
L + + PC +
Sbjct: 117 LAPDQKSCKPAVPFPCGRVSVSHS 140
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 111 bits (280), Expect = 9e-33
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCV 71
+ D CE+ PC N G CKD L YTC C + G+ G +CE+ C+ + C
Sbjct: 38 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCH 96
Query: 72 DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
++ +C C GYT PC
Sbjct: 97 EEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 90.8 bits (226), Expect = 1e-24
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 22 SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC 81
C+ + + + + + D C +PC+N +C D + +Y C C
Sbjct: 9 ERECMEETCSYEEAREVFEDSDK-TNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTC 67
Query: 82 YPGYTGKTCADDIKE-CESNPCQYGGTCLEHSN 113
G+ GK C ++ C + C E N
Sbjct: 68 LEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 100
Score = 68.1 bits (167), Expect = 8e-16
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 11 RLCETNIDD-CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR 69
+ CE C C + N+ C+C + GYT P PC
Sbjct: 74 KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCAR-GYTLADNGKACIPTGPYPCGKQTL 132
Query: 70 C 70
Sbjct: 133 E 133
Score = 29.6 bits (67), Expect = 0.19
Identities = 4/23 (17%), Positives = 5/23 (21%)
Query: 10 LRLCETNIDDCESGPCLNGGLCK 32
L PC L +
Sbjct: 112 LADNGKACIPTGPYPCGKQTLER 134
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 105 bits (264), Expect = 3e-30
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG---AR 69
++ D C S PC NGG CKD L +Y C C + G +CE + DD +NG
Sbjct: 43 SYSDGDQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDDQLICVNENGGCEQY 101
Query: 70 CVDKV-KDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
C D C C+ GY+ PC
Sbjct: 102 CSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 83.9 bits (208), Expect = 7e-22
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 22 SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC 81
C C + + D CA +PC+NG C D+++ Y+C C
Sbjct: 14 ERECKEE-QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC 72
Query: 82 YPGYTGKTCADDIKECESNPCQYGGTC 108
P + G+ C + + GG
Sbjct: 73 LPAFEGRNCETHKDDQLICVNENGGCE 99
Score = 61.2 bits (149), Expect = 4e-13
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 11 RLCETNIDDCESGPCLNGG---LCKDLLNN-YTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
R CET+ DD NGG C D +C C GY+ ++ PC
Sbjct: 79 RNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC-HEGYSLLADGVSCTPTVEYPCGK 137
Query: 67 GARC 70
Sbjct: 138 IPIL 141
Score = 26.5 bits (59), Expect = 2.7
Identities = 3/22 (13%), Positives = 5/22 (22%)
Query: 10 LRLCETNIDDCESGPCLNGGLC 31
L + PC +
Sbjct: 120 LLADGVSCTPTVEYPCGKIPIL 141
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 104 bits (262), Expect = 2e-29
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCV 71
+ D CE+ PC N G CKD L YTC C G+ G +CE+ C+ + C
Sbjct: 38 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCL-EGFEGKNCELFTRKLCSLDNGDCDQFCH 96
Query: 72 DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
++ +C C GYT PC +
Sbjct: 97 EEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRS 138
Score = 97.1 bits (242), Expect = 2e-26
Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 3/105 (2%)
Query: 11 RLCETNIDD-CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR 69
+ CE C C + N+ C+C + GYT P PC
Sbjct: 74 KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCAR-GYTLADNGKACIPTGPYPCGKQTL 132
Query: 70 CVDKVKDYLCECYPGYT-GKTCADDIKECESNPCQYGGTCLEHSN 113
K G + +P + L+ +
Sbjct: 133 ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQ 177
Score = 79.4 bits (196), Expect = 1e-19
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 14 ETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
E E C+ + + + + + D C +PC+N +C D
Sbjct: 2 EMKKGHLER-ECMEETCSYEEAREVFEDSDK-TNEFWNKYKDGDQCETSPCQNQGKCKDG 59
Query: 74 VKDYLCECYPGYTGKTCADDIKE-CESNPCQYGGTCLEHSN 113
+ +Y C C G+ GK C ++ C + C E N
Sbjct: 60 LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 100
Score = 69.4 bits (170), Expect = 8e-16
Identities = 9/77 (11%), Positives = 15/77 (19%)
Query: 10 LRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR 69
L PC L + + D +P +N
Sbjct: 112 LADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFD 171
Query: 70 CVDKVKDYLCECYPGYT 86
+D + T
Sbjct: 172 LLDFNQTQPERGDNNLT 188
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 100 bits (250), Expect = 4e-28
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 18 DDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCEINID------------DCAPNP 63
D C+ PC NGG+C L +++C C G+T P+C ++ C PNP
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPD-GFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 64 CKNGARCV-------DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
C NG C D Y+C+C G+ G C +I ECE PC+ GG C +
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVA 116
Score = 99.8 bits (249), Expect = 5e-28
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 13 CETNIDDCESGPCLNGGLCK-------DLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCK 65
T+ C PC NGG C+ D Y C C G+ G HC+ NI++C PCK
Sbjct: 48 EPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP-RGFNGIHCQHNINECEVEPCK 106
Query: 66 NGARCVDKVKDYLCECYPGYTGKTCADDIKECESN 100
NG C D V +Y CEC + G+ C +
Sbjct: 107 NGGICTDLVANYSCECPGEFMGRNCQYKGGGHHHH 141
Score = 27.8 bits (62), Expect = 0.88
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 96 ECESNPCQYGGTCLEHSNMSLYQ 118
C+ NPC+ GG CL +
Sbjct: 2 ICDPNPCENGGICLPGLADGSFS 24
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 90.5 bits (225), Expect = 9e-25
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 13 CETN-IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE--INIDDCAPNPCKNGAR 69
C ++ + C G C D + +++C+C+ +G+ G C+ ++ +C+ +
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCR-SGWEGRFCQREVSFLNCSLDNGGCTHY 67
Query: 70 CVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSL 116
C+++V C C PGY PC +E L
Sbjct: 68 CLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHL 114
Score = 55.5 bits (134), Expect = 3e-11
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 11 RLCETNID--DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGA 68
R C+ + +C C + + C+C GY + PC
Sbjct: 46 RFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAP-GYKLGDDLLQCHPAVKFPCGRPW 104
Query: 69 RCVDKVKDYL 78
+ ++K + +L
Sbjct: 105 KRMEKKRSHL 114
Score = 49.7 bits (119), Expect = 6e-09
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 54 INIDDCAPNP--------CKNGARCVDKVKDYLCECYPGYTGKTCADDI--KECESNPCQ 103
++ D C P C C+D + + C+C G+ G+ C ++ C +
Sbjct: 4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGG 63
Query: 104 YGGTCLEHSN 113
CLE
Sbjct: 64 CTHYCLEEVG 73
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 72.4 bits (178), Expect = 3e-16
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR-CVDK 73
C S PCL+ G C+D + YTC C GY G +CE+ ++C P C+
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTC-SPGYEGSNCELAKNECHPERTDGCQHFCLPG 61
Query: 74 VKDYLCECYPGYTGKTCADDIKECESNPC 102
+ Y C C GY + C
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 72.2 bits (177), Expect = 3e-16
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK 75
I C PC NGG C + C C GY G C + + C C +
Sbjct: 243 EISKC-PQPCRNGGKC---IGKSKCKCS-KGYQGDLCSKPVCEP---GCGAHGTCHE--- 291
Query: 76 DYLCECYPGYTGKTCADDIKECESNPCQYGG 106
C+C G+ G+ C + +
Sbjct: 292 PNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322
Score = 67.2 bits (164), Expect = 3e-14
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
S C NGG C C C G G CEI P PC+NG +C+
Sbjct: 212 KANCSTTCFNGGTC---FYPGKCICPP-GLEGEQCEI---SKCPQPCRNGGKCIG---KS 261
Query: 78 LCECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
C+C GY G C+ + E C GTC E
Sbjct: 262 KCKCSKGYQGDLCSKPVCEP---GCGAHGTCHE 291
Score = 66.4 bits (162), Expect = 4e-14
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 19 DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYL 78
+ C+NGGLC + C C G+ G +C+ C NG C
Sbjct: 181 ALCTPRCMNGGLC---VTPGFCICP-PGFYGVNCDK---ANCSTTCFNGGTCFY---PGK 230
Query: 79 CECYPGYTGKTCADDIKECESNPCQYGGTCL 109
C C PG G+ C +I +C PC+ GG C+
Sbjct: 231 CICPPGLEGEQC--EISKC-PQPCRNGGKCI 258
Score = 62.6 bits (152), Expect = 1e-12
Identities = 31/89 (34%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 22 SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC 81
G C NGG C + C C G+ GPHCE C NG CV C C
Sbjct: 152 PGGCRNGGFCNE---RRICECP-DGFHGPHCEK---ALCTPRCMNGGLCVT---PGFCIC 201
Query: 82 YPGYTGKTCADDIKECESNPCQYGGTCLE 110
PG+ G C S C GGTC
Sbjct: 202 PPGFYGVNCDKA---NCSTTCFNGGTCFY 227
Score = 47.9 bits (114), Expect = 1e-07
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG 67
LC + + C G C + C C Q G+ G HC + +
Sbjct: 272 DLCSKPVCEP---GCGAHGTCHE---PNKCQC-QEGWHGRHCNKRYEASLIGTKHHH 321
Score = 41.8 bits (98), Expect = 2e-05
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 4/72 (5%)
Query: 40 CNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECES 99
+ G C D A + + L KTC EC
Sbjct: 97 PHKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTC--QQAEC-P 152
Query: 100 NPCQYGGTCLEH 111
C+ GG C E
Sbjct: 153 GGCRNGGFCNER 164
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 69.7 bits (171), Expect = 4e-16
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK 75
N C G G CK C CQ G+ G +C D C P+P C +
Sbjct: 64 NRAICRQGCSPKHGSCKL---PGDCRCQ-YGWQGLYC----DKCIPHPGCVHGICNE--- 112
Query: 76 DYLCECYPGYTGKTCADDIKECESN-PCQYGGTCLEH 111
+ C C + G+ C D+ C ++ PC GGTC
Sbjct: 113 PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNT 149
Score = 64.7 bits (158), Expect = 4e-14
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCA-PNPCKNGARCVDKVKD 76
D C P G+C + + C C+ T + G C+ +++ C PC NG C + D
Sbjct: 97 DKCIPHPGCVHGICNE---PWQCLCE-TNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD 152
Query: 77 -YLCECYPGYTGKTC 90
Y C C GY+G C
Sbjct: 153 KYQCSCPEGYSGPNC 167
Score = 61.2 bits (149), Expect = 6e-13
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 12/91 (13%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
C G D N C G+ GP C I C C
Sbjct: 32 KFCRPRDDFFGHYACD--QNGNKTCM-EGWMGPECNRAI--CRQGCSPKHGSCKL---PG 83
Query: 78 LCECYPGYTGKTCADDIKECESNPCQYGGTC 108
C C G+ G C +C +P G C
Sbjct: 84 DCRCQYGWQGLYCD----KCIPHPGCVHGIC 110
Score = 57.4 bits (139), Expect = 2e-11
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 11/89 (12%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLC 79
S + G + C Y G C C P G D ++
Sbjct: 2 RGSHHHHHHGSIE---GRSAVTCD-DYYYGFGCN---KFCRPRDDFFGHYACD--QNGNK 52
Query: 80 ECYPGYTGKTCADDIKECESNPCQYGGTC 108
C G+ G C I C G+C
Sbjct: 53 TCMEGWMGPECNRAI--CRQGCSPKHGSC 79
Score = 41.2 bits (97), Expect = 2e-05
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 11 RLCETNIDDCES-GPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
+LC+ +++ C + PCLNGG C + + Y C+C + GY+GP+CEI
Sbjct: 125 QLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPE-GYSGPNCEI 169
Score = 39.3 bits (92), Expect = 1e-04
Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 6/55 (10%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
+ + C Y G C K C +G + +
Sbjct: 2 RGSHHHHHHGSIEG---RSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQNG 50
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 67.9 bits (165), Expect = 2e-14
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
+ + + + P +G + + + G ++ C NG C
Sbjct: 154 IRDVRVQSSLALPVDSGEVK--------LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCS 205
Query: 72 DKVKDYLCEC-YPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSD 121
+C+C G+ GK C+ +E + C + S + SD
Sbjct: 206 VVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSD 256
Score = 53.7 bits (128), Expect = 2e-09
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPC 64
CE C+ C N G+C + ++C+C T ++GP C +
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 53.3 bits (127), Expect = 3e-09
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 46 GYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC-YPGYTGKTCADDIKECESNPCQY 104
G CE C + C N C+ + + C+C ++G C D +
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Query: 105 GGTCLEHSNMSLYQRSD 121
T N R+D
Sbjct: 1067 QITYKWPPNDRPSTRAD 1083
Score = 49.8 bits (118), Expect = 4e-08
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Query: 35 LNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYP-GYTGKTCADD 93
+ G C NPCKN C D Y+C+C GY G++C +
Sbjct: 598 IRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE 657
Query: 94 IKECESNPCQYGGTCLEHSNMS 115
+ + L +
Sbjct: 658 ATVLSYDGSMFMKIQLPVVMHT 679
Score = 49.1 bits (116), Expect = 7e-08
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPC 64
C S PC N G+C+D N Y C+C TGY G CE + +
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGS 666
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 58.3 bits (142), Expect = 4e-13
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
+ D CES PCLNGG CKD +N+Y C C G+ G +CE+
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPF-GFEGKNCEL 39
Score = 55.2 bits (134), Expect = 7e-12
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
++ D C NPC NG C D + Y C C G+ GK C
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 32.1 bits (74), Expect = 0.005
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 93 DIKECESNPCQYGGTCLEHSN 113
D +CESNPC GG+C + N
Sbjct: 2 DGDQCESNPCLNGGSCKDDIN 22
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 57.4 bits (139), Expect = 2e-11
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKV 74
T++++C G C + +Y C+C + + D C R
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPP-DFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 75 KDYLCECYPGY--TGKTCADDIKECESNPCQYGGTC 108
D C G + +C + + PC+
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAV 95
Score = 51.2 bits (123), Expect = 3e-09
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQ-TGYTGPHCEINIDDCAPNPCKNGARCV 71
D SG C + + C+ + G + C ++ PC+
Sbjct: 37 TRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVN 96
Query: 72 DKVKDYLCECYPGYT----GKTCADDIKECESNPC 102
LC G+ +DI EC+ P
Sbjct: 97 TSEYKILCPGGEGFRPNPITVIL-EDIDECQELPG 130
Score = 38.1 bits (89), Expect = 2e-04
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN---IDDCAPNPCK-NGA 68
C ++ PC C + G+ + ID+C P G
Sbjct: 77 CCCSLGKAWGTPCEMCPAVNTSEYKILCPGGE-GFRPNPITVILEDIDECQELPGLCQGG 135
Query: 69 RCVDKVKDYLCECYPGYTGKTCADDIKECE 98
+C++ + C C GY +D + C+
Sbjct: 136 KCINTFGSFQCRCPTGYYL---NEDTRVCD 162
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 58.5 bits (141), Expect = 3e-11
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 43 QQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC-YPGYTGKTCADDIKECESNP 101
G CE C + C N C+ + + C+C ++G C D +
Sbjct: 172 FCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 231
Query: 102 CQYGGTCLEHSNMSLYQRSD 121
T N R+D
Sbjct: 232 GGGQITYKWPPNDRPSTRAD 251
Score = 58.5 bits (141), Expect = 4e-11
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
CE C+ C N G+C + ++C+C T ++GP C +
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 54.0 bits (130), Expect = 8e-11
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 38 YTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK--DYLCECYPGYTGKTCADDIK 95
C C +G H + + C+ C NG C + D++C+C G+ GK+C D +
Sbjct: 32 EYCWCN-SGRAQCHS-VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
Query: 96 E 96
Sbjct: 90 A 90
Score = 49.4 bits (118), Expect = 5e-09
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 13 CETNIDDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCEINI 56
+ C C NGG C+ L +++ C C G+ G CEI+
Sbjct: 44 HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQC-PEGFAGKSCEIDT 88
Score = 44.0 bits (104), Expect = 5e-07
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 37 NYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKE 96
+Y C+ T + + P R C C G + +K
Sbjct: 1 SYQVICRD-EKTQMIYQQH--QSWLRPVLRSNRV------EYCWCNSGRAQ-CHSVPVKS 50
Query: 97 CESNPCQYGGTCLEHSNMSLYQ 118
C C GGTC + S +
Sbjct: 51 CSEPRCFNGGTCQQALYFSDFV 72
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 56.4 bits (135), Expect = 2e-10
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 13 CETNIDDCESGPCLN-GGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
++I C +C + TC C+ TGP C + P G+ +
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECE-HNTTGPDCGKCKKNYQGRPWSPGS-YL 344
Query: 72 DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
K C P + E CQ GGTC
Sbjct: 345 PIPKGAANACIPSISSIGTNVCD--NELLHCQNGGTC 379
Score = 50.6 bits (120), Expect = 2e-08
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
C + + P G + C + + ++ C+NG C +
Sbjct: 326 CGKCKKNYQGRPWSPGS-YLPIPKGAANACIP-SISSIGTNVCDNEL--LHCQNGGTCHN 381
Query: 73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
V+ C C YTG C ++ C+ G+C S
Sbjct: 382 NVR---CLCPAAYTGILC----EKLR---CEEAGSCGSDSG 412
Score = 38.3 bits (88), Expect = 3e-04
Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
TN+ D E C NGG C NN C C YTG CE C+ C
Sbjct: 361 IGTNVCDNELLHCQNGGTC---HNNVRCLCPA-AYTGILCE-------KLRCEEAGSCGS 409
Query: 73 KVKDYLCECYPGYTGKTC 90
G
Sbjct: 410 DSGQ--GAPPHGTHHHHH 425
Score = 37.1 bits (85), Expect = 8e-04
Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 55 NIDDCAPNPCKNGA-RCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
+I C A CV CEC TG C K + P G+ L
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWS-PGSYLPIPK 348
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 52.8 bits (126), Expect = 4e-09
Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 19/106 (17%)
Query: 19 DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCA-----PNPCKNGARCVDK 73
+ C+N G+C + + C C G+ G CE + C C
Sbjct: 199 NHLCTACMNNGVCHE--DTGECICP-PGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY 255
Query: 74 VK----DYLCECYPGYTGKTCADDIKECESNP-------CQYGGTC 108
V Y C C G+ G C + P C G C
Sbjct: 256 VFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC 301
Score = 49.7 bits (118), Expect = 4e-08
Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 6/105 (5%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI-NIDDCAPNPCKNGARCV 71
D C NG +C C C G+ G CE I P
Sbjct: 283 GFYGPDCKLRCSCNNGEMCD---RFQGCLCSP-GWQGLQCEREGIPRMTPKIVDLPDHIE 338
Query: 72 DKVKDYLCECY-PGYTGKTCADDIKECESNPCQYGGTCLEHSNMS 115
+ C G+ T + + + S
Sbjct: 339 VNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFS 383
Score = 47.0 bits (111), Expect = 3e-07
Identities = 19/100 (19%), Positives = 25/100 (25%), Gaps = 13/100 (13%)
Query: 18 DDCESGPCLNGG-LCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKD 76
D GG L + GP C C N C +
Sbjct: 163 DAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECN-----HLCTACMNNGVCHE--DT 215
Query: 77 YLCECYPGYTGKTCADDIKECE-----SNPCQYGGTCLEH 111
C C PG+ G+TC + C C +
Sbjct: 216 GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY 255
Score = 44.3 bits (104), Expect = 3e-06
Identities = 8/87 (9%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 14 ETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
I + + C+ +G+ P E + P+ + +
Sbjct: 320 REGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNE-EMTLVKPDGTVLHPKDFNH 378
Query: 74 VKDYLCECYPGYTGKTCADDIKECESN 100
+ + + + C N
Sbjct: 379 TDHFSVAIFTIHRILPPDSGVWVCSVN 405
Score = 33.5 bits (76), Expect = 0.014
Identities = 11/76 (14%), Positives = 16/76 (21%), Gaps = 8/76 (10%)
Query: 40 CNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD--KVKDYLCECYPGYTGKTCADDIKEC 97
PH + D + G + + C G C
Sbjct: 147 EVPDILEVHLPHAQPQ-DAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPEC-----NH 200
Query: 98 ESNPCQYGGTCLEHSN 113
C G C E +
Sbjct: 201 LCTACMNNGVCHEDTG 216
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 49.3 bits (118), Expect = 1e-08
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKD 76
ID+CES PC+NG +CK+ ++ C C T + + C
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSS-ESTLDPTKTICIETIKGTCWQTVID----GR 57
Query: 77 YLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
C + +PC
Sbjct: 58 CEININGATLKSQCCSSLGAAWGSPCTLCQVD 89
Score = 41.6 bits (98), Expect = 1e-05
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT-GPHCEINIDDCAPNPCKNGARCV 71
+T + G C + C G T C ++ +PC
Sbjct: 37 TKTICIETIKGTCWQTVID------GRCEININGATLKSQCCSSLGAAWGSPCTLCQ--- 87
Query: 72 DKVKDYLCECYPGYTGKTCA--DDIKECESNPC 102
C GY+ +DI ECE P
Sbjct: 88 -----VDPICGKGYSRIKGTQCEDIDECEVFPG 115
Score = 37.7 bits (88), Expect = 3e-04
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
ID+C +PC NG C + ++CEC T E C
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Score = 36.9 bits (86), Expect = 6e-04
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQ--TGYTGPHCEINIDDCAPNPCK-NGAR 69
C +++ PC C + + G CE +ID+C P
Sbjct: 71 CCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQCE-DIDECEVFPGVCKNGL 121
Query: 70 CVDKVKDYLCECYPGYTG 87
CV+ + C+C G T
Sbjct: 122 CVNTRGSFKCQCPSGMTL 139
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 47.8 bits (113), Expect = 2e-07
Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 13/101 (12%)
Query: 11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
+ C G C+ C C +GY P C+ P+PC C
Sbjct: 554 ERTTEGCLNPRRVECSGRGRCRC----NVCEC-HSGYQLPLCQEC--PGCPSPCGKYISC 606
Query: 71 VDKVKDYLCECYPGYTGKTCADD-IKECESNPCQYGGTCLE 110
+ + G GK C+ SN G TC E
Sbjct: 607 AE-----CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKE 642
Score = 45.1 bits (106), Expect = 2e-06
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 13 CETNIDDCE-SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID-----DCAPNPCKN 66
CE + +CE + GG + L C C G+ G C+ + C
Sbjct: 512 CECDTINCERYNGQVCGGPGRGLCFCGKCRCH-PGFEGSACQCERTTEGCLNPRRVECSG 570
Query: 67 GARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
RC +CEC+ GY C +PC +C E
Sbjct: 571 RGRCRC----NVCECHSGYQLPLC--QECPGCPSPCGKYISCAE 608
Score = 42.4 bits (99), Expect = 2e-05
Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 12/96 (12%)
Query: 19 DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN-IDDCAPNPCKNGARCVDKVKDY 77
PC C + G G +C N G C ++
Sbjct: 594 PGCPSPCGKYISC-----AECLKFE-KGPFGKNCSAACPGLQLSNNPVKGRTCKERDS-- 645
Query: 78 LCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
C+ YT + D + C+ +
Sbjct: 646 -EGCWVAYTLEQQ--DGMDRYLIYVDESRECVAGPD 678
Score = 34.3 bits (78), Expect = 0.009
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 7/101 (6%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
+ + L Q C + C
Sbjct: 387 ITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE-CRCRDQSRDRSLCHGKGFLEC 445
Query: 73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
+ C C GY GK C + S + G+C + +N
Sbjct: 446 GI----CRCDTGYIGKNCECQTQGRSSQELE--GSCRKDNN 480
Score = 32.0 bits (72), Expect = 0.048
Identities = 13/87 (14%), Positives = 19/87 (21%), Gaps = 14/87 (16%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
C + C G C C GY G +CE + + R +
Sbjct: 425 CRCRDQSRDRSLCHGKGFL----ECGICRCDT-GYIGKNCECQTQGRSSQELEGSCRKDN 479
Query: 73 KVK---------DYLCECYPGYTGKTC 90
C C+
Sbjct: 480 NSIICSGLGDCVCGQCLCHTSDVPGKL 506
Score = 25.4 bits (55), Expect = 9.9
Identities = 11/65 (16%), Positives = 14/65 (21%), Gaps = 6/65 (9%)
Query: 8 NGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG 67
G S + G CK + C YT + D
Sbjct: 617 FGKNCSAACPGLQLSNNPVKGRTCK---ERDSEGC-WVAYTLEQQDGM--DRYLIYVDES 670
Query: 68 ARCVD 72
CV
Sbjct: 671 RECVA 675
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 42.6 bits (101), Expect = 1e-06
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT--GPHCEINIDDCAPNPCKNGARCVD 72
++D+C+ G C + +Y C C GY G C + D+C+ C +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECP-FGYILAGNECV-DTDECSVGNPCGNGTCKN 60
Query: 73 KVKDYLCECYPGYTGKTCADDIKECE 98
+ + C C G+ + CE
Sbjct: 61 VIGGFECTCEEGFEP----GPMMTCE 82
Score = 37.2 bits (87), Expect = 1e-04
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYT--GKTCADDIKECESNPCQYGGTC 108
+++D+C +C++ Y CEC GY G C D EC GTC
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNGTC 58
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 45.1 bits (106), Expect = 2e-06
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 18 DDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
+ C S PC N G C + Y C+C +TG+ G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 34.3 bits (78), Expect = 0.008
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 57 DDCAPNPCKNGARCVDKVKD-YLCECYP-GYTGKTC 90
+ C NPC+N C+ D Y C+C G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 44.6 bits (105), Expect = 2e-06
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 34.2 bits (78), Expect = 0.008
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 IDDCAPNPCKNGARCVDKVKD-YLCECYP-GYTGKTC 90
++ C PC++ CV D Y C+C GY+G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 40.2 bits (94), Expect = 4e-05
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 52 CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECE 98
C C C C++ + +Y C CYPG+ G C + +
Sbjct: 117 CYT--ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 38.6 bits (90), Expect = 1e-04
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDC 59
LC T C+ C G C + + NYTC+C G+ GP CE DD
Sbjct: 116 LCYT--ASCQDMSCSKQGECLETIGNYTCSCYP-GFYGPECEYVRDDD 160
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 40.0 bits (93), Expect = 1e-04
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 17 IDDCESGPCLNGGLCKDLLN-NYTCNCQQTGYT--GPHCEINIDDCAPN-----PCKNGA 68
D C S PC G C + +++C G+ G HCE ++D+CA
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVP 61
Query: 69 RCVDKVKDYLCE-CYPGYTG---KTCADDIKECESNPCQYGGTCLEHSN 113
RCV+ + C C P Y G + + E C+ C + ++
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTH 110
Score = 31.1 bits (70), Expect = 0.095
Identities = 19/121 (15%), Positives = 25/121 (20%), Gaps = 22/121 (18%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE----------------INI 56
C D C C + + C Y G N
Sbjct: 47 CALVPDIC--FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENP 104
Query: 57 DDCAPNPCKNGARCV----DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHS 112
+ C A C+ Y CEC GY G C ++
Sbjct: 105 CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNA 164
Query: 113 N 113
Sbjct: 165 T 165
Score = 29.2 bits (65), Expect = 0.50
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 4/97 (4%)
Query: 13 CETNIDDC-ESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
C+ +C + C+ G D Y C CQ TGY G D C
Sbjct: 105 CKDKTHNCHKHAECIYLGHFSD--PMYKCECQ-TGYAGDGLICGEDSDLDGWPNLNLVCA 161
Query: 72 DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
+ + + + +D +
Sbjct: 162 TNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDD 198
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 39.5 bits (92), Expect = 1e-04
Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 2/105 (1%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQT--GYTGPHCEINIDDCAPNPCKNGARCVDKVK 75
C N ++ + Y +CE +++ + + +
Sbjct: 57 VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGA 116
Query: 76 DYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRS 120
E + T +C P + + + L +
Sbjct: 117 TATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESY 161
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 38.6 bits (90), Expect = 1e-04
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 52 CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
C C C CV+ + +Y C+C PG++G C
Sbjct: 117 CYT--AACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 36.7 bits (85), Expect = 8e-04
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
LC T C + C G C + +NNYTC C G++G CE
Sbjct: 116 LCYT--AACTNTSCSGHGECVETINNYTCKCDP-GFSGLKCE 154
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 39.3 bits (91), Expect = 2e-04
Identities = 18/96 (18%), Positives = 21/96 (21%), Gaps = 16/96 (16%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
C G C +C C Q G G CE P+ C C
Sbjct: 563 RTDTCMSSNGLLCSGRGKC----ECGSCVCIQPGSYGDTCEKC--PTCPDACTFKKEC-- 614
Query: 73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
EC G D C +
Sbjct: 615 ------VECKKFDRGALH--DENTCNRYCRDEIESV 642
Score = 36.2 bits (83), Expect = 0.002
Identities = 19/115 (16%), Positives = 29/115 (25%), Gaps = 28/115 (24%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPN---------- 62
C+ + G + C C G+ G CE + +D P+
Sbjct: 437 CQAQAEPNSHRCNNGNGTFE----CGVCRCGP-GWLGSQCECSEEDYRPSQQDECSPREG 491
Query: 63 --PCKNGARCVDKVKDYLCECYPGYTGKTCAD-------DIKECESNPCQYGGTC 108
C C+ C C+ GK + C G C
Sbjct: 492 QPVCSQRGECLCGQ----CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC 542
Score = 36.2 bits (83), Expect = 0.002
Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 11/94 (11%)
Query: 22 SGPCLNGGLCKDLLNNYTCNCQQTG-YTGPHCEINIDDCA---PNPCKNGARCVDKVKDY 77
C G C C+ G TG +CE + C C +C
Sbjct: 492 QPVCSQRGECLC--GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD--- 546
Query: 78 LCECYPGYTGKTCADDIKECESNPCQYGGTCLEH 111
C C +TG C ++ G C
Sbjct: 547 -CLCDSDWTGYYCNCTT-RTDTCMSSNGLLCSGR 578
Score = 27.4 bits (60), Expect = 2.3
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 5/78 (6%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
E + C + + + Q T C+ + +
Sbjct: 399 IEAKVRGCPQEKEKSFTIKPVGFKDSLI-VQVTFDCDCACQAQAEPNSHRCNNGNGTFEC 457
Query: 73 KVKDYLCECYPGYTGKTC 90
V C C PG+ G C
Sbjct: 458 GV----CRCGPGWLGSQC 471
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 36.9 bits (86), Expect = 2e-04
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 56 IDDCA--PNPCKNGARCVDKVKDYLCECYPGYT----GKTCADDIKECESNPCQ 103
+D+C+ P+ C C + D+ CEC GY K+C +DI EC N C
Sbjct: 3 VDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCA 54
Score = 31.5 bits (72), Expect = 0.025
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 20/90 (22%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT----GPHCEINIDDCAPNPCKNGA 68
C C + C N + ++ C C + GY CE +ID+C+ N C
Sbjct: 6 CSLKPSICGTAVCKN------IPGDFECECPE-GYRYNLKSKSCE-DIDECSENMC--AQ 55
Query: 69 RCVDKVKDYLCEC--YPGYT----GKTCAD 92
CV+ Y C C G+ K+C
Sbjct: 56 LCVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 37.3 bits (87), Expect = 2e-04
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 26 LNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGY 85
+ +++Y ++C N C D Y C C G+
Sbjct: 1 MKHHHHHHPMSDYDIPTT-ENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGF 58
Query: 86 T---GKTCADDIKECESN 100
+ C +DI EC+
Sbjct: 59 QLVAQRRC-EDIDECQDP 75
Score = 29.6 bits (67), Expect = 0.13
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT---GPHCEINIDDCA-PNPCKNGARC 70
++C +C DL Y C C G+ CE +ID+C P+ C C
Sbjct: 27 MGTNECLDNNGGCSYVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTC--SQLC 82
Query: 71 VDKVKDYLCECYPGYT----GKTC 90
V+ Y C+C G+ K C
Sbjct: 83 VNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 27.3 bits (61), Expect = 0.88
Identities = 6/43 (13%), Positives = 8/43 (18%), Gaps = 1/43 (2%)
Query: 66 NGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
+ DY + EC N C
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGA-MGTNECLDNNGGCSYVC 43
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 38.3 bits (89), Expect = 4e-04
Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 7/124 (5%)
Query: 9 GLRLCETNIDD--CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
L+ E+ + + L+G + ++ C + Y D
Sbjct: 256 LLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHE 315
Query: 67 G--ARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPA 124
C + V+ C+ + + ++ K G+ + +
Sbjct: 316 ACQKLCTNAVR---CQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLR 372
Query: 125 LPKI 128
L K+
Sbjct: 373 LCKM 376
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 36.1 bits (84), Expect = 4e-04
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 15 TNIDDCESGPCLNG-GLCKDLLNNYTCNC----QQTGYTGPHCEINIDDCAPNPCK-NGA 68
T+ID+C P L G G C + ++ C C + +C +ID+C +P G
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGG 59
Query: 69 RCVDKVKDYLCECYPGYT----GKTC 90
C + Y CEC PG+ C
Sbjct: 60 VCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 32.3 bits (74), Expect = 0.013
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 56 IDDCAPNPCKNG-ARCVDKVKDYLCECYPGYT-----GKTCADDIKECESNPCQ 103
ID+C +P G +CV+ D+ C+C GY K C DI EC+ +P
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC-MDIDECQRDPLL 55
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 36.6 bits (85), Expect = 5e-04
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKD 76
+D C C +Y C C + G+ E + N A C
Sbjct: 4 VDPCFRANC-EYQCQPLDQTSYLCVCAE-GFAPIPHEPHRCQMFCNQTACPADCDPNT-Q 60
Query: 77 YLCECYPGYT---GKTCADDIKECESNPC 102
CEC GY G C DI ECE+
Sbjct: 61 ASCECPEGYILDDGFIC-TDIDECENGGF 88
Score = 28.9 bits (65), Expect = 0.27
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
+D C C+ YLC C G+ + N C
Sbjct: 4 VDPCFRANCEYQ-CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC 55
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 37.1 bits (86), Expect = 5e-04
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 52 CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
C C P C CV+ + +Y C C GY G C
Sbjct: 117 CYT--ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 35.2 bits (81), Expect = 0.003
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
LC T C+ C G C +++NNYTCNC GY GP C+
Sbjct: 116 LCYT--ASCQPWSCSGHGECVEIINNYTCNCDV-GYYGPQCQ 154
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 35.2 bits (81), Expect = 5e-04
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 19 DCESGPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
G CLNGG+C + L++YTCNC GY+G C+
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNC-VIGYSGDRCQ 43
Score = 29.8 bits (67), Expect = 0.043
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 58 DCAPNPCKNGARC--VDKVKDYLCECYPGYTGKTC 90
C NG C ++ + Y C C GY+G C
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 37.0 bits (85), Expect = 8e-04
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 22/100 (22%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLC 79
+ P +GG+ G + N+ + +G + + Y
Sbjct: 146 GSAAPWHSGGVW---------------VLGTRGKQNVINVDAK-SNDGGKTLSGTMTYNG 189
Query: 80 ECYPGYTGKTCADDIKE------CESNPCQYGGTCLEHSN 113
E G+ G + D + P GG + +
Sbjct: 190 EGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGAR 229
Score = 30.1 bits (67), Expect = 0.19
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 66 NGARCVDKVKDYLCECYPGYTGKTCADDIKE------CESNPCQYGGTCLEHSN 113
+G + + Y E G+ G + + S P Q GG + +
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGAR 95
Score = 26.2 bits (57), Expect = 3.9
Identities = 14/94 (14%), Positives = 20/94 (21%), Gaps = 22/94 (23%)
Query: 27 NGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD------CAPNPCKNGARCVDKVKDYLCE 80
+GG Y G+ G N P + G V +D
Sbjct: 42 DGGKTLKGTMTYNGEGP-IGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARD---- 96
Query: 81 CYPGYTGKTCADDIKECESNPCQYGGTCLEHSNM 114
+ S GG L +
Sbjct: 97 ------KQNIV-----AVSIKSNDGGKTLTGTTT 119
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 37.3 bits (86), Expect = 9e-04
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLC 79
C +G C G C C G+ G C C P C++G CV K C
Sbjct: 399 CRNGYCTPTGKC----------CCSPGWEGDFCRTAK--CEP-ACRHGGVCVRPNK---C 442
Query: 80 ECYPGYTGKTC 90
C GY G C
Sbjct: 443 LCKKGYLGPQC 453
Score = 28.4 bits (63), Expect = 0.77
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
CE C +GG+C + C C++ GY GP CE
Sbjct: 426 CEP-ACRHGGVC---VRPNKCLCKK-GYLGPQCE 454
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 35.9 bits (82), Expect = 0.002
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYT----GKTCADDIKECESNP 101
++C N +C C C+ GY G+TC D+ EC
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC-QDVNECAEEG 51
Score = 32.1 bits (72), Expect = 0.055
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT---GPHCEINIDDCAPNP-CKNGARC 70
T ++C C+ + C C TGY ++++CA C G C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTC-HTGYRLTEDGRTCQDVNECAEEGYCSQG--C 57
Query: 71 VDKVKDYLCECYPGY 85
+ + C C GY
Sbjct: 58 TNSEGAFQCWCEAGY 72
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 34.8 bits (80), Expect = 0.003
Identities = 27/118 (22%), Positives = 35/118 (29%), Gaps = 31/118 (26%)
Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN--------IDDCAP---NPC 64
+ C C C N C C G++ I I++CA C
Sbjct: 1 DSRGCARW-CPQDSSCV---NATACRCN-PGFSSFSEIITTPMETCDDINECATLSKVSC 55
Query: 65 KNGARCVDKVKDYLCECYPGYT------------GKTCADDIKECESN--PCQYGGTC 108
+ C + Y C C PGY TC D+ EC S C C
Sbjct: 56 GKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC-QDVDECSSGQHQCDSSTVC 112
Score = 33.6 bits (77), Expect = 0.008
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 20/101 (19%)
Query: 17 IDDCESG---PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN-----------IDDCA-- 60
I++C + C C + +Y C C GY +D+C+
Sbjct: 44 INECATLSKVSCGKFSDCWNTEGSYDCVCS-PGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 61 PNPCKNGARCVDKVKDYLCECYPGYTGKTCA---DDIKECE 98
+ C + C + V Y C C PG+ + CE
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 32.1 bits (73), Expect = 0.006
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 18 DDCESGPCLNGGLCK--DLLNNYTCNCQQTGYTGPHCE 53
G CL+ G+C + L+ Y CNC GY G C+
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNC-VVGYIGERCQ 43
Score = 26.3 bits (58), Expect = 1.0
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 57 DDCAPNPCKNGARC--VDKVKDYLCECYPGYTGKTC 90
C + C ++ + Y C C GY G+ C
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 33.7 bits (76), Expect = 0.013
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
++C N C D Y C C G+ + + + CQ TC
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF---QLVAQRRCEDIDECQDPDTC 49
Score = 31.0 bits (69), Expect = 0.12
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 7/125 (5%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYT--GPHCEINIDDCAPNPCKNGARCVDKVK 75
++C +C DL Y C C G+ +ID+C +P CV+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPD-GFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEG 58
Query: 76 DYLCECYPGYT---GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
Y C+C G+ + + + S +P L + A +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 133 FNYST 137
++
Sbjct: 119 TEVAS 123
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 33.4 bits (75), Expect = 0.014
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 25 CLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPG 84
+ T T + P C+NG C + +CEC G
Sbjct: 118 AFEVDVIVMNSEGNTILX--TPQNAIFFKTCQQAECPGGCRNGGFCNE---RRICECPDG 172
Query: 85 YTGKTC 90
+ G C
Sbjct: 173 FHGPHC 178
Score = 28.3 bits (62), Expect = 0.74
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 9 GLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
+T G C NGG C C C G+ GPHCE
Sbjct: 139 NAIFFKTCQQAECPGGCRNGGFC---NERRICECPD-GFHGPHCE 179
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 32.3 bits (72), Expect = 0.027
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 14/104 (13%)
Query: 10 LRLCETNIDDCESGPCLNGG----LCKDLLNNYTCNCQQTGYTGPH-----CEINIDDCA 60
L +D C+ C G + + C+C P C
Sbjct: 84 LXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ 143
Query: 61 PNPCKNGARCVDKVKDYLCECYPGYTG----KTCADDIKECESN 100
+ C + Y C+C G+T C +
Sbjct: 144 LXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC-LGPHHHHHH 186
Score = 31.2 bits (69), Expect = 0.068
Identities = 18/106 (16%), Positives = 25/106 (23%), Gaps = 12/106 (11%)
Query: 14 ETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID-----------DCAPN 62
E G + N++ C C G + C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCN-EGLVHLSENTCEEXNECXXETLGXACGEF 59
Query: 63 PCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
+V Y C C GYT + C+ C G C
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGEC 105
Score = 28.8 bits (63), Expect = 0.50
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 11/105 (10%)
Query: 14 ETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGA----R 69
ET C +N Y C C + GYT +D C C
Sbjct: 50 ETLGXACGEFGQCIENPDPAQVNMYXCGCIE-GYTLXEDTCVLDVCQYXNCGESGECIVE 108
Query: 70 CVDKVKDYLCECYPGYTGKTCAD------DIKECESNPCQYGGTC 108
+ +++ C C G + C+ C
Sbjct: 109 YLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVC 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.031
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 26/100 (26%)
Query: 49 GPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKE-----CESNPCQ 103
N A NP + A + Y+ E TG E E+ Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV-----EIVNYNVENQ--Q 1852
Query: 104 Y--GGT---------CLEHSNMSLYQRSDLPALPKIFAQE 132
Y G L + Q+ D+ L K + E
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKL---QKIDIIELQKSLSLE 1889
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 31.1 bits (69), Expect = 0.10
Identities = 16/65 (24%), Positives = 17/65 (26%), Gaps = 20/65 (30%)
Query: 40 CNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECES 99
CNC T PHC V C C PG G+ C E
Sbjct: 457 CNCSDTQPQAPHC-----------SDGQGHLQCGV----CSCAPGRLGRLC-----ESRG 496
Query: 100 NPCQY 104
Y
Sbjct: 497 LENLY 501
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.12
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 109 LEHSNMSLYQRSDLPALPKIFAQ 131
L+ +++ LY PAL I A
Sbjct: 25 LQ-ASLKLYADDSAPAL-AIKAT 45
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 30.9 bits (69), Expect = 0.12
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 52 CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYT--GKTCADDIKECESNPCQYG 105
C N C+ + A C D + C C YT G+ C + N G
Sbjct: 8 CANNRHQCSVH-----AECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKG 58
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 30.7 bits (69), Expect = 0.14
Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 3/80 (3%)
Query: 13 CETNIDDCESGPCLNGGLC--KDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
+ C C G C + + + +
Sbjct: 332 VTSGALLCSQALCSGHGRCVRRTSHPKALLLLNPASF-SIQLTPGGGPLSLRGALSLEDQ 390
Query: 71 VDKVKDYLCECYPGYTGKTC 90
++ C CYPG+ C
Sbjct: 391 AQMAVEFKCRCYPGWQAPWC 410
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 28.0 bits (62), Expect = 0.26
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 18 DDCESGPCLNGGLCKDL----LNNYTCNCQQTGYTGPHCE 53
+ ++ CLN C + L Y+C C G+ G CE
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCEC-AIGFMGQRCE 47
Score = 26.8 bits (59), Expect = 0.65
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 57 DDCAPNPCKNGARC----VDKVKDYLCECYPGYTGKTC 90
+ C N A C + + Y CEC G+ G+ C
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 30.0 bits (66), Expect = 0.29
Identities = 10/72 (13%), Positives = 15/72 (20%), Gaps = 5/72 (6%)
Query: 37 NYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKE 96
+ + D C C RCV C C + G C +
Sbjct: 515 HQPAPFDKQQTWAIDNVYIGDGCLDM-CSGHGRCVQGS----CVCDEQWGGLYCDEPETS 569
Query: 97 CESNPCQYGGTC 108
+
Sbjct: 570 LPTQLKDNFNRA 581
Score = 26.5 bits (57), Expect = 4.4
Identities = 15/100 (15%), Positives = 22/100 (22%), Gaps = 10/100 (10%)
Query: 12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
+ I D C G C +C C + + G +C+ N R
Sbjct: 528 IDNVYIGDGCLDMCSGHGRC----VQGSCVCDE-QWGGLYCDEPETSLPTQLKDNFNRAP 582
Query: 72 DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEH 111
G C + G C
Sbjct: 583 SNQ--NWLTVSGGKLSTVCGAV---ASGLALHFSGGCSRL 617
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 29.9 bits (66), Expect = 0.30
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 3/87 (3%)
Query: 40 CNCQQTGYTGPHCEINIDDCAP--NPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKEC 97
Q + C+ N C+ PCK CE C +
Sbjct: 42 FQHFQNNGSLVWCQ-NHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFL 100
Query: 98 ESNPCQYGGTCLEHSNMSLYQRSDLPA 124
+ G C S + + + +
Sbjct: 101 KYILLVKQGDCPAPEKASGFAAACVES 127
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 27.8 bits (61), Expect = 0.30
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 57 DDCAPNPCKNGARC-----VDKVKDYLCECYPGYTGKTC 90
+ C NG C + YLC+C PG+TG C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
Score = 27.8 bits (61), Expect = 0.39
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 18 DDCESGPCLNGGLC-----KDLLNNYTCNCQQTGYTGPHCE 53
+ E C+NGG C + Y C C Q G+TG C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKC-QPGFTGARCT 46
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate
binding module, xylan degradation; HET: XYP; 1.85A
{Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB:
1us3_A
Length = 530
Score = 29.6 bits (66), Expect = 0.34
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G + +++ + Y + + FN+ TA
Sbjct: 178 GVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAG 211
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 29.0 bits (65), Expect = 0.34
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 45 TGYTGPHCEINIDDCAPNPCKN-GARCVDKVKDYLCECYPGYTGKTCADDIKECESN 100
TG+ + +I++C C + + Y C C P Y DD+K C N
Sbjct: 106 TGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFL---HDDMKNCGVN 159
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 29.4 bits (65), Expect = 0.35
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
+ CE C + + + CN G+ G C +N +D N C +C D
Sbjct: 3 EACELPECQED--AGNKVCSLQCNNHACGWDGGDCSLNFNDPWKN-CTQSLQCWKYFSDG 59
Query: 78 LC--ECYPGYTGKTCADDIKECESNPCQYGGTCLEH 111
C +C D + Y C +H
Sbjct: 60 HCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDH 95
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 29.1 bits (64), Expect = 0.48
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
+ CE C + + + CN G+ G C +N +D N C +C D
Sbjct: 3 EACELPECQED--AGNKVCSLQCNNHACGWDGGDCSLNFNDPWKN-CTQSLQCWKYFSDG 59
Query: 78 LC--ECYPGYTGKTCADDIKECESNPCQYGGTCLEH 111
C +C D + Y C +H
Sbjct: 60 HCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDH 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.98
Identities = 14/152 (9%), Positives = 32/152 (21%), Gaps = 58/152 (38%)
Query: 1 MEVLWSQNGLRLCETNIDDCESGPCLNGGLCK------DLLNNYTCNCQQ---------T 45
+ ++W ++ + + + +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 46 GYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYG 105
Y P + DD P +D Y + G+
Sbjct: 452 HYNIPKT-FDSDDLIPPY-------LD---QYFYS-HIGH-------------------- 479
Query: 106 GTCLEH-SNMSLYQRSDLPALPKIFAQEFNYS 136
H N+ +R L +F ++
Sbjct: 480 -----HLKNIEHPERMTL--FRMVF---LDFR 501
Score = 27.5 bits (60), Expect = 2.1
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 15/83 (18%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCA--DDIKECESNPCQYGGTCLEHSNMSL 116
A N + + K Y+C+ P Y A D + + E N + L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-------LICSKYTDL 567
Query: 117 YQRSDLPALPKIFAQEFNYSTAE 139
+ AL + E + A
Sbjct: 568 LRI----AL--MAEDEAIFEEAH 584
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 27.6 bits (60), Expect = 1.5
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 12/54 (22%)
Query: 37 NYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
+ C+C C+ + + V C C PG+ G C
Sbjct: 430 TFDCDCA--------CQAQAEPNSHRCNNGNGTFECGV----CRCGPGWLGSQC 471
Score = 26.0 bits (56), Expect = 5.1
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 19 DCESGPCLNGGLCKDLLNNYTCN-CQ-QTGYTGPHCE 53
C++ N C + + C C+ G+ G CE
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 27.7 bits (60), Expect = 1.6
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 5/70 (7%)
Query: 39 TCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECE 98
+ + + G + C P+ C C+ V C C GYT
Sbjct: 174 SSSQKNVPPFGLDGVYISEPC-PSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPN 228
Query: 99 SNPCQYGGTC 108
+
Sbjct: 229 HSEMFDRFEG 238
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION,
thermostable, glycosyle hydrolase, family 10, error
prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP:
c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Length = 348
Score = 27.1 bits (60), Expect = 2.0
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G + S + + A I EFN TAE
Sbjct: 12 GVAVAASGGNADIFTS-SARQNIVRAEFNQITAE 44
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 26.9 bits (59), Expect = 2.4
Identities = 8/54 (14%), Positives = 15/54 (27%)
Query: 50 PHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQ 103
+ + + PC + + C+C T C E C+
Sbjct: 159 DYVDGSGSGSPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCR 212
Score = 25.8 bits (56), Expect = 5.8
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCK 65
+ + GPC + + TC C T C+ + C+
Sbjct: 161 VDGSGSGSPCGPCSERRKHLFVQDPQTCKC-SCKNTDSRCKARQLELNERTCR 212
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 24.9 bits (54), Expect = 2.7
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 25 CLNGGLCKDL----LNNYTCNCQQTGYTGPHCE 53
CLN C + L Y+C C G+ G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCEC-AIGFMGQRCE 47
Score = 24.9 bits (54), Expect = 3.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 64 CKNGARC----VDKVKDYLCECYPGYTGKTC 90
C N A C + + Y CEC G+ G+ C
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase,
hemicellulose, xylan degradation; HET: XYS AHR; 1.43A
{Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A*
1ur2_A* 2cnc_A*
Length = 378
Score = 26.4 bits (58), Expect = 3.4
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 104 YGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G L + S L + A+EFN T E
Sbjct: 36 LIGAALNATIAS----GADERLNTLIAKEFNSITPE 67
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 26.4 bits (58), Expect = 3.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 79 CECYPGYTGKTCADDIKECESN 100
CEC YTG C++ I+ C ++
Sbjct: 39 CECNTCYTGPDCSEKIQGCSAD 60
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 26.6 bits (58), Expect = 3.6
Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 13/77 (16%)
Query: 27 NGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG---------ARCVDKVKDY 77
G L N + ++ C NG + +
Sbjct: 238 TGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF 297
Query: 78 LCECYPGYT----GKTC 90
C C G ++C
Sbjct: 298 TCACPDGMLLARDMRSC 314
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 26.1 bits (57), Expect = 3.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 37 NYTCNCQQTGYTGPHCEINIDDCAPNPCKNG---ARCVDKVKDYLCECYPGYTGKTCADD 93
+Y+ TG+ + +ID+C P + C + + + C C GY
Sbjct: 105 DYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT 164
Query: 94 IKE 96
E
Sbjct: 165 CSE 167
Score = 26.1 bits (57), Expect = 4.3
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 13 CETNIDDCESGPCLNGGL---CKDLLNNYTCNCQQTGYTGPHCEINIDD 58
+ID+C+ P C + L + C+C+ GY + +
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRA-GYVLHRNKRTCSE 167
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 26.4 bits (57), Expect = 4.0
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 21 ESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCE 80
S G + + N + C N C+ ++Y C
Sbjct: 269 NSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCA 328
Query: 81 CYPGYT---GKTCADDI 94
C G+ CA ++
Sbjct: 329 CPTGFRKINSHACALEV 345
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 25.1 bits (54), Expect = 4.5
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 25 CLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
C++G CK + L +C C GY G C
Sbjct: 48 CIHG-ECKYVKELRAPSCICH-PGYHGERCH 76
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 26.0 bits (56), Expect = 4.7
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 51 HCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
C + C + C C GY GK C + + + + G+C +
Sbjct: 185 ECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNC--ECQTQGRSSQELEGSCRK 238
Query: 111 HSN 113
+N
Sbjct: 239 DNN 241
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus
stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A*
3msd_A* 3msg_A* 3mui_A* 3ms8_A
Length = 331
Score = 25.9 bits (57), Expect = 5.5
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G + + + + ++ N TAE
Sbjct: 19 GAAVNPVTIEMQK--------QLLIDHVNSITAE 44
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 25.7 bits (56), Expect = 5.6
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTG---YTGPHCEINIDDCAPNPCKNGA 68
L + D S C G C C+ G +CE + +C NG
Sbjct: 132 LEGSCRKDNNSIICSGLGDCVC--GQCLCHTSDVPGKLIYGQYCECDTINC---ERYNGQ 186
Query: 69 RCVD----KVKDYLCECYPGYTGKTC 90
C C C+PG+ G C
Sbjct: 187 VCGGPGRGLCFCGKCRCHPGFEGSAC 212
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase,
enzyme, ultra HIG resolution, cryo temperature, 1; HET:
PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB:
1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A*
1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A*
1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A
Length = 303
Score = 25.7 bits (57), Expect = 6.0
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 6/36 (16%)
Query: 104 YGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
Y G + + ++ I F T E
Sbjct: 17 YFGVATDQNRLTT------GKNAAIIQANFGQVTPE 46
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 24.0 bits (52), Expect = 6.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 25 CLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
CL+G C L ++ C C+ GYTG CE
Sbjct: 14 CLHGQ-CIYLVDMSQNYCRCE-VGYTGVRCE 42
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha
barrel (xylanase), HYD inhibitor-hydrolase complex; HET:
NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Length = 303
Score = 25.7 bits (57), Expect = 6.6
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 104 YGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
Y GTC + + + + I A +F T E
Sbjct: 16 YFGTCSDQALLQ-----N-SQNEAIVASQFGVITPE 45
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease,
polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB:
1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 24.0 bits (52), Expect = 7.1
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 25 CLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
C +G C+ L + C C +GY G CE
Sbjct: 16 CFHGT-CRFLVQEDKPACVCH-SGYVGARCE 44
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 25.4 bits (55), Expect = 8.8
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 27/130 (20%)
Query: 6 SQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYT---CNCQQTGYTGPHCEINIDDCAPN 62
C ++ + ++GG+C + +N C + Y D
Sbjct: 320 CNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCE 379
Query: 63 PC---KNGARCVDKVKDYL----------CECYPGYTGKTC-----------ADDIKECE 98
PC G+ Y C C G+ C A+D C+
Sbjct: 380 PCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCK 439
Query: 99 SNPCQYGGTC 108
S C GT
Sbjct: 440 SCACNPLGTI 449
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 25.2 bits (54), Expect = 9.4
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 8/103 (7%)
Query: 13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
N C SG C+ + + P E ++C N C D
Sbjct: 256 EGPNKFKCHSGECITLDKVCN-----MARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 310
Query: 73 KVKDYLCECYPGY---TGKTCADDIKECESNPCQYGGTCLEHS 112
Y C C G+ + C D + + + C LE
Sbjct: 311 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 353
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 23.6 bits (50), Expect = 9.9
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 59 CAPNPC--KNGARCVDKVKDYLCECYPGY 85
C+ NPC + C + Y+C C GY
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.468
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,160,631
Number of extensions: 121180
Number of successful extensions: 1090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 438
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)