RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9687
(141 letters)
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 50.4 bits (121), Expect = 2e-10
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
+++C S PC N C D + + C C GY G HCE+N
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCIC-MPGYEGVHCEVN 38
Score = 48.9 bits (117), Expect = 7e-10
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD 93
+++C NPC+N A C+D++ ++ C C PGY G C +
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38
Score = 28.1 bits (63), Expect = 0.048
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 94 IKECESNPCQYGGTCLEHSN 113
+ EC SNPCQ TCL+
Sbjct: 1 VNECVSNPCQNDATCLDQIG 20
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 50.4 bits (121), Expect = 2e-10
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
++ D C NPC NG C D + Y C C G+ GK C
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 49.7 bits (119), Expect = 4e-10
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
+ D CES PCLNGG CKD +N+Y C C G+ G +CE+
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWC-PFGFEGKNCEL 39
Score = 29.6 bits (67), Expect = 0.013
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 93 DIKECESNPCQYGGTCLEHSN 113
D +CESNPC GG+C + N
Sbjct: 2 DGDQCESNPCLNGGSCKDDIN 22
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 49.7 bits (119), Expect = 4e-10
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
D CE+ PC N G CKD L YTC C G+ G +CE+
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTC-LEGFEGKNCELF 37
Score = 47.0 bits (112), Expect = 5e-09
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D C +PC+N +C D + +Y C C G+ GK C
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 34
Score = 27.3 bits (61), Expect = 0.11
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 96 ECESNPCQYGGTCLEHSN 113
+CE++PCQ G C +
Sbjct: 2 QCETSPCQNQGKCKDGLG 19
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 48.5 bits (115), Expect = 2e-09
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 15 TNIDDCESGPCLNGGLCK-----DLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
+ E C+NGG C + Y C CQ G+TG C N+ N K
Sbjct: 4 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQP-GFTGARCTENVPMKVQNQEKA 59
Score = 46.9 bits (111), Expect = 9e-09
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 54 INIDDCAPNPCKNGARC-----VDKVKDYLCECYPGYTGKTCADDIKECESNPCQ 103
+ + C NG C + YLC+C PG+TG C +++ N +
Sbjct: 4 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEK 58
Score = 25.0 bits (54), Expect = 1.3
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 93 DIKECESNPCQYGGTCLEHSN 113
E E C GG C +
Sbjct: 5 KCAEKEKTFCVNGGECFMVKD 25
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 47.4 bits (113), Expect = 3e-09
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D CA +PC+NG C D+++ Y+C C P + G+ C
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 36
Score = 46.6 bits (111), Expect = 6e-09
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
D C S PC NGG CKD L +Y C C + G +CE
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCE 37
Score = 29.3 bits (66), Expect = 0.018
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 93 DIKECESNPCQYGGTCLEHSN 113
D +C S+PCQ GG+C +
Sbjct: 1 DGDQCASSPCQNGGSCKDQLQ 21
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 46.7 bits (111), Expect = 6e-09
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
++ C PC + G+C L+ Y C+C +TGY+GP+C I
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 37.5 bits (87), Expect = 2e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 IDDCAPNPCKNGARCVDK-VKDYLCECYP-GYTGKTC 90
++ C PC++ CV + Y C+C GY+G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 25.2 bits (55), Expect = 0.73
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 94 IKECESNPCQYGGTCLEHS 112
+ C PCQ+ G C+
Sbjct: 2 VNPCCYYPCQHQGICVRFG 20
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 45.8 bits (109), Expect = 1e-08
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
D+CA +PC + RC+DK+ ++ CEC G+TG C
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 34
Score = 45.4 bits (108), Expect = 1e-08
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
D+C S PCL+ G C D +N + C C TG+TG C+
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCEC-PTGFTGHLCQ 35
Score = 26.6 bits (59), Expect = 0.18
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 96 ECESNPCQYGGTCLEHSN 113
EC S+PC + G CL+ N
Sbjct: 2 ECASSPCLHNGRCLDKIN 19
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 45.5 bits (108), Expect = 2e-08
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDI 94
C C CV+ + +Y C+C PG++G C +
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39
Score = 44.8 bits (106), Expect = 4e-08
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI 56
C + C G C + +NNYTC C G++G CE +
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKC-DPGFSGLKCEQIV 39
Score = 25.9 bits (57), Expect = 0.37
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 96 ECESNPCQYGGTCLEHSN 113
C + C G C+E N
Sbjct: 3 ACTNTSCSGHGECVETIN 20
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 45.2 bits (107), Expect = 2e-08
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 18 DDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
+ C S PC N G C + Y C+C +TG+ G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 35.5 bits (82), Expect = 9e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 57 DDCAPNPCKNGARCVD-KVKDYLCEC-YPGYTGKTC 90
+ C NPC+N C+ Y C+C G+ G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 25.1 bits (55), Expect = 0.81
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 96 ECESNPCQYGGTCLEHS 112
C SNPCQ G C+
Sbjct: 3 PCCSNPCQNRGECMSTG 19
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 43.6 bits (103), Expect = 9e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
C C C++ + +Y C CYPG+ G C
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 35
Score = 43.6 bits (103), Expect = 9e-08
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID 57
C+ C G C + + NYTC+C G+ GP CE D
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSC-YPGFYGPECEYVRD 40
Score = 25.5 bits (56), Expect = 0.47
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 96 ECESNPCQYGGTCLEHSN 113
C+ C G CLE
Sbjct: 3 SCQDMSCSKQGECLETIG 20
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 42.8 bits (101), Expect = 2e-07
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 17 IDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
+D+C + PC + G C + L ++ C C GYTGP CEI+
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQC-LQGYTGPRCEID 42
Score = 42.4 bits (100), Expect = 3e-07
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 56 IDDCA--PNPCKNGARCVDKVKDYLCECYPGYTGKTCADD 93
+D+C+ NPC++ +C++ + + C+C GYTG C D
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42
Score = 23.5 bits (51), Expect = 2.9
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 93 DIKECE--SNPCQYGGTCLEHSN 113
D+ EC +NPC++ G C+
Sbjct: 2 DVDECSLGANPCEHAGKCINTLG 24
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 40.6 bits (95), Expect = 1e-06
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQ-QTGYTGPHCEINID 57
C C NGG C+ L CQ G+ G CEI+
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 39
Score = 39.5 bits (92), Expect = 4e-06
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 59 CAPNPCKNGARCVDKVK--DYLCECYPGYTGKTCADDIKE 96
C+ C NG C + D++C+C G+ GK+C D +
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 40
Score = 25.2 bits (55), Expect = 0.74
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 97 CESNPCQYGGTCLEHSNMSLYQRSDLPA 124
C C GGTC + S +
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVCQCPEG 28
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 39.8 bits (93), Expect = 3e-06
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 51 HCEIN--IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIK 95
C + CA C +G C+D + + C+C G+ G+ C ++
Sbjct: 1 QCLVLPLEHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46
Score = 38.6 bits (90), Expect = 9e-06
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID 57
C S C +G C D + +++C+C+ G+ G C+ +
Sbjct: 8 EHPCASLCCGHGT-CIDGIGSFSCDCRS-GWEGRFCQREVS 46
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 39.1 bits (91), Expect = 6e-06
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 14 ETNIDDCESGPCLNGGLCKDLLNNYTCNCQ-QTGYTGPHCE 53
++ G CL+ G+C + C GY G C+
Sbjct: 1 DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 41
Score = 35.6 bits (82), Expect = 1e-04
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 53 EINIDDCAPNPCKNGARC--VDKVKDYLCECYPGYTGKTC 90
+ C + C ++ + Y C C GY G+ C
Sbjct: 1 DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 40
Score = 24.8 bits (54), Expect = 1.2
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 93 DIKECESNPCQYGGTCLEHSNMSLYQ 118
+ C + G C+ + Y
Sbjct: 3 ECPLSHDGYCLHDGVCMYIEALDKYA 28
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 36.0 bits (83), Expect = 8e-05
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 13 CETNIDDCESGPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCEI 54
G CLNGG+C + L++YTCNC GY+G C+
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVI-GYSGDRCQT 44
Score = 35.6 bits (82), Expect = 1e-04
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 52 CEINIDDCAPNPCKNGARC--VDKVKDYLCECYPGYTGKTC 90
C NG C ++ + Y C C GY+G C
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 23.7 bits (51), Expect = 3.0
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 90 CADDIKECESNPCQYGGTCLEHSNMSLYQ 118
C GG C+ ++ Y
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYT 30
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 33.2 bits (76), Expect = 7e-04
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYT--GKTCAD 92
+++D+C +C++ Y CEC GY G C D
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVD 43
Score = 25.9 bits (57), Expect = 0.38
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTG 49
++D+C+ G C + +Y C C GY
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPF-GYIL 36
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 31.7 bits (72), Expect = 0.003
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 18 DDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCE 53
C+ G + +C C + GY G CE
Sbjct: 9 PKQYKHYCIKGRCRFVVAEQTPSCVCDE-GYIGARCE 44
Score = 26.3 bits (58), Expect = 0.33
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 57 DDCAPNPCKNGARC-VDKVKDYLCECYPGYTGKTC 90
+ C G V + C C GY G C
Sbjct: 9 PKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARC 43
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 29.7 bits (67), Expect = 0.014
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 15 TNIDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCE 53
T +G CL+G + ++ C C+ GYTG CE
Sbjct: 4 TKCSSDMNGYCLHGQCIYLVDMSQNYCRCEV-GYTGVRCE 42
Score = 25.9 bits (57), Expect = 0.37
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 57 DDCAPNPCKNGARCVDK-VKDYLCECYPGYTGKTC 90
C +G + C C GYTG C
Sbjct: 7 SSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRC 41
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 29.8 bits (67), Expect = 0.017
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 18 DDCESGPCLNGGLCK-DLLNNYTCNCQQTGYTGPHCE 53
D + C +G + C C GY G CE
Sbjct: 8 PDSHTQFCFHGTCRFLVQEDKPACVCHS-GYVGARCE 43
Score = 25.6 bits (56), Expect = 0.63
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 57 DDCAPNPCKNGARC-VDKVKDYLCECYPGYTGKTC 90
D C +G + + C C+ GY G C
Sbjct: 8 PDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARC 42
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus
[TaxId: 155077]}
Length = 364
Score = 29.9 bits (66), Expect = 0.087
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G + +++ + Y + + FN+ TA
Sbjct: 20 GVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAG 53
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 27.6 bits (61), Expect = 0.11
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 24 PCLNGGLCKDLLNNYTCNCQ--QTGYTGPHCEINIDDCAPNPCKNGARC 70
PC G C + C TG G CE+ D +P +
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPV 50
Score = 25.6 bits (56), Expect = 0.71
Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 63 PCKNGARCVDKVKD---YLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
PC G+ C K C G GK C +P G
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPV 50
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 27.2 bits (60), Expect = 0.15
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYT----GKTCAD 92
+++C CV+ Y+C+C P + C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
Score = 22.9 bits (49), Expect = 4.4
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQ 44
T++++C G C + +Y C+C
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPP 30
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 26.7 bits (59), Expect = 0.21
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 56 IDDCA--PNPCKNGARCVDKVKDYLCECYPGYTG 87
ID+C P+ C G +CV+ D+ C+C GY
Sbjct: 3 IDECRISPDLCGRG-QCVNTPGDFECKCDEGYES 35
Score = 22.5 bits (48), Expect = 8.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 15 TNIDDCESGP-CLNGGLCKDLLNNYTCNCQQTGYTGPHC 52
T+ID+C P G C + ++ C C GY
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKC-DEGYESGFM 38
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 26.0 bits (57), Expect = 0.33
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 52 CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYT--GKTCADD 93
C N C+ + A C D + C C YT G+ C +
Sbjct: 2 CANNRHQCSVH-----AECRDYATGFCCRCVANYTGNGRQCVAE 40
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 27.7 bits (61), Expect = 0.47
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 79 CECYPGYTGKTCADDIKECESN 100
CEC YTG C++ I+ C ++
Sbjct: 39 CECNTCYTGPDCSEKIQGCSAD 60
Score = 24.7 bits (53), Expect = 4.9
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 40 CNCQQTGYTGPHCEINIDDCAPN 62
C C YTGP C I C+ +
Sbjct: 39 CECNTC-YTGPDCSEKIQGCSAD 60
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella
nidulans (Aspergillus nidulans) [TaxId: 162425]}
Length = 301
Score = 27.8 bits (61), Expect = 0.51
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 103 QYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
Y GTC + + + I A +F T E
Sbjct: 13 SYFGTCSDQALL------QNSQNEAIVASQFGVITPE 43
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 24.7 bits (54), Expect = 0.89
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 56 IDDCA--PNPCKNGARCVDKVKDYLCECYPGYT----GKTC 90
ID+C P C+ G +C++ + C C GY + C
Sbjct: 3 IDECQELPGLCQGG-KCINTFGSFQCRCPTGYYLNEDTRVC 42
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ
[TaxId: 1515]}
Length = 320
Score = 26.8 bits (58), Expect = 0.93
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
GTC+ N Y SD P I +EF+ E
Sbjct: 15 GTCV---NYPFYNNSD-PTYNSILQREFSMVVCE 44
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas
fluorescens [TaxId: 294]}
Length = 346
Score = 26.7 bits (58), Expect = 0.97
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G + S + + A I EFN TAE
Sbjct: 11 GVAVAASGGNADIFTS-SARQNIVRAEFNQITAE 43
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 24.8 bits (54), Expect = 1.0
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 56 IDDCAPNPCKNGA---RCVDKVKDYLCECYPGYT----GKTCAD 92
ID+C P + C + + + C C GY +TC++
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 24.7 bits (54), Expect = 1.1
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYT----GKTCAD 92
ID+C +P CV+ Y C+C G+ K C
Sbjct: 1 IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 24.9 bits (54), Expect = 1.1
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 52 CEINIDDCAPN-PCKNGARCVDKVKDYLCECYPGYT----GKTC 90
C + + C + V Y C C PGY +C
Sbjct: 7 CASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 24.4 bits (53), Expect = 1.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 56 IDDCAPNPCK-NGARCVDKVKDYLCECYPGYT----GKTC 90
ID+C +P G C + Y CEC PG+ C
Sbjct: 2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 24.3 bits (53), Expect = 1.5
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYT---GKTC 90
++C N C D Y C C G+ + C
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC 39
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus
aurantiacus [TaxId: 5087]}
Length = 303
Score = 25.8 bits (56), Expect = 2.2
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 6/37 (16%)
Query: 103 QYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
Y G + + + I F T E
Sbjct: 16 VYFGVATDQNRL------TTGKNAAIIQANFGQVTPE 46
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 23.7 bits (51), Expect = 2.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 25 CLNGGLC---KDLLNNYTCNCQQTGYTGPHCEINID 57
CLNGG C K N + CNC + + G HCEI+
Sbjct: 4 CLNGGTCVSNKYFSNIHWCNCPK-KFGGQHCEIDKS 38
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6
[TaxId: 1422]}
Length = 330
Score = 25.6 bits (55), Expect = 2.5
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G + + + + ++ N TAE
Sbjct: 18 GAAVNPVTIEMQK--------QLLIDHVNSITAE 43
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId:
2336]}
Length = 324
Score = 25.6 bits (55), Expect = 2.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 115 SLYQRSDLPALPKIFAQEFNYSTAE 139
+ + SD ++ +EFN T E
Sbjct: 21 NFWSLSDAEKYMEVARREFNILTPE 45
>d1kkea2 b.21.1.2 (A:313-455) Reovirus attachment protein sigma 1
head domain {Reovirus [TaxId: 10891]}
Length = 143
Score = 25.3 bits (55), Expect = 2.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 73 KVKDYLCECYPGYTGKTCADD 93
V DY+ C P + G + AD
Sbjct: 31 IVDDYIHICLPAFDGFSIADG 51
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 25.3 bits (55), Expect = 2.7
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 47 YTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGK 88
Y I + + + D + + PG G
Sbjct: 52 YAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGA 93
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 23.6 bits (51), Expect = 2.8
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTG 87
ID+C N C + + C C P
Sbjct: 2 IDECE-NGGFCSGVCHNLPGTFECICGPDSAL 32
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Length = 350
Score = 25.1 bits (54), Expect = 3.3
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 106 GTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
G L N ++ +D L + A+EFN T E
Sbjct: 13 GAAL---NATIASGAD-ERLNTLIAKEFNSITPE 42
>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces
halstedii [TaxId: 1944]}
Length = 302
Score = 24.7 bits (53), Expect = 4.8
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 104 YGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAE 139
Y G + +++ A +F T E
Sbjct: 14 YFGAAVAANHL------GEAAYASTLDAQFGSVTPE 43
>d1nl1a2 g.32.1.1 (A:1-65) Prothrombin {Cow (Bos taurus) [TaxId:
9913]}
Length = 65
Score = 23.2 bits (50), Expect = 5.1
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 96 ECESNPCQYGGTCLE 110
E NP + CLE
Sbjct: 49 ESARNPREKLNECLE 63
Score = 23.2 bits (50), Expect = 5.6
Identities = 2/15 (13%), Positives = 4/15 (26%)
Query: 19 DCESGPCLNGGLCKD 33
+ P C +
Sbjct: 49 ESARNPREKLNECLE 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.468
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,771
Number of extensions: 29135
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 167
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)